1. ゲノム情報

• Acaryochloris tomasi   NIES-3840   ゲノムの解読
  Whole-genome (PQWO00000000)
  Partensky, F. et al. 2018 A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle. Sci Rep, 8, 9142 (article ID).
• Annamina dubia   NIES-4383   ゲノムの解読  new
  Whole-genome (AP025630)
  Tuji, A. et al. 2024. Complete genome sequence of Annamia dubia, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity.
• Astrephomene gubernaculifera   NIES-4017   ゲノムの解読
  Whole-genome (BMAR00000000)
  Yamashita, S. et al. 2021 Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation. Sci Rep, 11, 22231 (article ID).
• Anabaena cylindrica   NIES-19   ゲノムの解読
• Anabaena variabilis   NIES-23   ゲノムの解読
• Anabaenopsis circularis   NIES-21   ゲノムの解読
• Aphanizomenon flos-aquae   NIES-81   Draft ゲノム解析終了
  Whole-genome (AZYY00000000)
  Cao, H. et al. 2014. Draft genome sequence of the toxic bloom-forming cyanobacterium Aphanizomenon flos-aquae NIES-81. GenomeA, 2, e00044-14.
• Aulosira laxa   NIES-50   ゲノムの解読
• Arthrospira platensis   NIES-39   ゲノムの解読
  NITE DOGAN
  Whole-genome (AP011615)
  Fujisawa, T. et al. 2010. Genomic structure of an economically important cyanobacterium, Arthrospira(Spirulina) platensis NIES-39. DNA Res., 17:85-103.
• Calothrix brevissima   NIES-22   ゲノムの解読
• Calothrix parasitica   NIES-267   ゲノムの解読
• Calothrix sp.   NIES-2098   ゲノムの解読
• Calothrix sp.   NIES-2100   ゲノムの解読
• Calothrix sp.   NIES-2101   ゲノムの解読
  Whole-genome (MRCD00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Calothrix sp.   NIES-3974   ゲノムの解読
• Calothrix sp.   NIES-4101   ゲノムの解読
• Calothrix sp.   NIES-4105   ゲノムの解読
• Carteria cerasiformis   NIES-425   葉緑体ゲノムの解読
  Plastid DNA (KT625415)
  Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID).
• Chlamydomonas applanata   NIES-2202   ゲノムの解読
  Whole-genome (BDCZ00000000)
  Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
• Chlamydomonas asymmetrica   NIES-2207   ゲノムの解読
  Whole-genome (BDDA00000000)
  
  Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
• Chlamydomonas debaryana   NIES-2212   ゲノムの解読
  Whole-genome (BDDB00000000)
  Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
• Chlamydomonas eustigma   NIES-2499   ゲノムの解読
• Chlamydomonas reinhardtii   NIES-2235   EST解析が行われている
  2本鞭毛をもつ、単細胞性の緑藻（緑藻綱）で、古くから光合成や遺伝の研究に用いられてきた。 本株は東京大学分子細胞生物学研究所IAM C-9株に由来し、かずさDNA研究所と京都大学の共同研究でEST解析が行われている。
  Chlamydomonas reinhardtii  EST index
  ChlamyBase
• Chlamydomonas sphaeroides   NIES-2242   ゲノムの解読
  Whole-genome (BDDC00000000)
  
  Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
• Chlorella vulgaris   NIES-2170   色素体
• Chloropicon roscoffensis   NIES-2755   色素体、ミトコンドリアのゲノムの解読
  Mitochondrial DNA (MK086006)
  Plastid DNA (MK085992)
  Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.
• Chloroparvula japonica   NIES-2758   色素体、ミトコンドリアのゲノムの解読
  Mitochondrial DNA (MK086007)
  Plastid DNA (MK085993)
  Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.
• Chloroparvula pacifica   NIES-3669   色素体、ミトコンドリアのゲノムの解読
  Mitochondrial DNA (MK086011)
  Plastid DNA (MK085995)
  Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.
• Chondrocystis sp.   NIES-4102   ゲノムの解読
• Chroogloeocystis siderophila   NIES-1031   ゲノムの解読
  Whole-genome (MRCC00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Chroomonas collegionis   NIES-703   色素体
• Chroomonas borealis   NIES-276   色素体
• Chroomonas debatzensis   NIES-2331   色素体
• Chrysochromulina sp.   NIES-1333   ミトコンドリアゲノムの解読
  Mitochondrial DNA (AB930144)
  
  Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014. An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID).
• Chrysophaeum taylorii   NIES-1699   ゲノムの解読
  Whole-genome (JAQMWT000000000)
  Davison, J. R. et al. 2023 The genome of antibiotic-producing colonies of the Pelagophyte alga Chrysophaeum taylorii reveals a diverse and non-canonical capacity for secondary metabolism. Sci Rep, 13, 11944 (article ID).
• Cladocopium sp.   NIES-4077   ゲノムの解読
  Whole-genome (BGPT00000000)
  Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).
• Closterium peracerosum-strigosum-littorale complex   NIES-67   色素体、ミトコンドリア、核のゲノムの解読
  Whole-genome (BQMB00000000)
  Mitochondrial DNA (LC704716)
  Plastid DNA (LC704717)
  
  Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022. Highly efficient transformation of the model zygnematophycean alga Closterium peracerosum-strigosum-littorale complex by square-pulse electroporation. New Phytol., 233, 569-578.
• Closterium peracerosum-strigosum-littorale complex   NIES-68   色素体、ミトコンドリア、核のゲノムの解読
  Whole-genome (BQMA00000000)
  Mitochondrial DNA (LC704714)
  Plastid DNA (LC704715)
  
  Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022. Highly efficient transformation of the model zygnematophycean alga Closterium peracerosum-strigosum-littorale complex by square-pulse electroporation. New Phytol., 233, 569-578.
• Coccomyxa subellipsoidea   NIES-2166   ゲノムの解読
  Coccomyxa subellipsoidea C-169 Genome sequencing project
• Cryptomonas curvata   NIES-281   色素体
• Cryptomonas irregularis   NIES-698   色素体
• Cryptomonas paramaecium   NIES-715   色素体
• Cryptomonas tetrapyrenoidosa   NIES-348   色素体
• Cryptomonas sp.   NIES-345   色素体
• Cryptomonas sp.   NIES-1327   色素体
• Cryptomonas sp.   NIES-3952   色素体
• Cyanidioschyzon merolae   NIES-3377   葉緑体、ミトコンドリア、核のゲノムの解読
  Cyanidioschyzonは、高温（45-50℃）、強酸性（pH1.0-3.0）の環境に生息する微小な単細胞紅藻で、 核、ミトコンドリア、葉緑体、小胞体、ゴルジ体、マイクロボディ、リソソームなどの細胞小器官を１つずつ含む極めて単純な体制をもつ。 立教大学黒岩常祥教授らのチームによって、10D株として、葉緑体、ミトコンドリア、核のゲノム解読が終了している。
  染色体数は20で、核ゲノムは16,546,747塩基対、タンパク質をコードする遺伝子は4,775個である。 イントロンが非常に少なく、 rRNA遺伝子は3コピーしか持たないという特徴をもつ。
  
  Cyanidioschyzon merolae Genome Project
• Cyanobium sp.   NIES-981   ゲノムの解読
  Whole-genome (LT578417)
  Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID).
• Cyanophora kugrensii   NIES-763   ミトコンドリアゲノムの解読
  Mitochondrial DNA (KM198930)
  Smith, D. R. et al. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.
• Cyanophora sudae   NIES-764   ミトコンドリア、核のゲノムの解読
  Mitochondrial DNA (MT919637)
  Russell, S. et al. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).
  
  Plastid DNA (MG601102)
  Reyes-Prieto, A. et al. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes species. J. Eukaryot. Adv. Bot. Res. 85, 95-127.
• Diphylleia rotans   NIES-3764   ミトコンドリア
• Dolichospermum compactum   NIES-806   ゲノムの解読
• Dolichospermum planctonicum   NIES-80   ゲノムの解読
  Whole-genome (BJCF00000000)
  Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).
• Eudorina sp.   NIES-3984   Whole-genome   ミトコンドリア
• Eudorina sp.   NIES-3985   ゲノムの解読
  Whole-genome (BDSJ00000000)
  Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 17
• Eutreptiella gymnastica   NIES-381   transcriptomeの解読
• Fremyella diplosiphon   NIES-3275   ゲノムの解読
• Geminocystis sp.   NIES-3708   ゲノムの解読
  Whole-genome (AP014815 - AP014820)
  Hirose, Y. et al. 2015. Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3708, which performs type II complementary chromatic acclimation. GenomeA, 3, e00357-15.
• Geminocystis sp.   NIES-3709   ゲノムの解読
  Whole-genome (AP014821 - AP014832)
  
  Hirose, Y. et al. 2015. Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3709, which harbors a phycoerythrin-rich phycobilisome. GenomeA, 3, e00385-15.
• Glaucocystis nostochinearum   NIES-2141   ミトコンドリア
• Gonium pectorale   NIES-2863   ミトコンドリア   色素体
• Haematococcus lacustris   NIES-144    ゲノムの解読
  Whole-genome (BLLF00000000)
  Morimoto, D., Yoshida, T., Sawayama, S. 2020 Draft genome sequence of the astaxanthin-producing microalga Haematococcus lacustris Strain NIES-144. Microbiol Resour Announc., 9, e00128-20 (article ID).
• Hafniomonas laevis   NIES-257   色素体<
• Hemiselmis andersenii   NIES-2716   色素体
• Heterosigma akashiwo   NIES-293   色素体
• Hydrococcus rivularis   NIES-593   ゲノムの解読
  Whole-genome (MRCB00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Kipferlia bialata   NIES-1968   ゲノムの解読
  Whole-genome (BDIP00000000)
  
  Tanifuji, G. et al. 2018. The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487.
• Klebsormidium flaccidum   NIES-2285   葉緑体、ミトコンドリア、核のゲノムの解読
  Klebsormidium flaccidum genome project
  Whole-genome (BANV00000000)
  Mitochondrial DNA (DF238763)
  Plastid DNA (DF238762)
  
  Hori, K. et al. 2014. Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat. Commun.
• Leptolyngbya boryana   NIES-2135   ゲノムの解読
• Leptolyngbya sp.   NIES-30   ゲノムの解読
  Whole-genome (MRCG00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Leptolyngbya sp.   NIES-2104   ゲノムの解読
  Whole-genome (BBWW00000000)
  Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412.
• Leptolyngbya sp.   NIES-3755   ゲノムの解読
  Whole-genome (AP017308)
  Hirose, Y. et al. 2016. Complete genome sequence of cyanobacterium Fischerella sp. strain NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.
• Leucocryptos marina   NIES-1335   ミトコンドリアゲノムの解読
  Mitochondrial DNA (LC515368)
  Nishimura. Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K-I., Hashimoto, T., Inagaki, Y., Ohkuma, M. 2020 Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista. Front. Ecol. Evol., 8, 140 (article ID).
• Marsupiomonas sp.   NIES-1824   色素体   ミトコンドリア
• Mastigocladus sp.   NIES-592   ゲノムの解読
  Whole-genome (MRCA00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Mastigocladus sp.   NIES-3754   ゲノムの解読
  Whole-genome (AP017305)
  Hirose, Y. et al. 2016. Complete genome sequence of cyanobacterium Fischerella sp. strain NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.
• Mayamaea pseudoterrestris   NIES-4280   ゲノムの解読
  Whole-genome (BROI00000000)
  Suzuki, S. et al. 2022. Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure. DNA Res., 29, dsac037 (article ID).
• Medakamo hakoo   NIES-4000   色素体、ミトコンドリア、核のゲノムの解読
  Whole-genome (CP089450-CP089465)
  Mitochondrial DNA (LC604817)
  Plastid DNA (LC604816)
  
  Kato, S. et al. 2023. Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun. Biol., 6, 89 (article ID).
• Mesostigma viride   NIES-296   葉緑体、ミトコンドリア、核のゲノムの解読
  高等植物に最も近縁な車軸藻綱の最も原始的なグループ。単細胞、２鞭毛性で、体は鱗片に覆われる。
  Whole-genome (RPFO00000000)
  Liang, Z., Geng, Y., Ji, C. et al. 2020 Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta. Adv. Sci., 7, 1901850 (article ID).
  Mitochondorial DNA (AF353999)
  Plastid DNA (AF166114)
• Mesostigma viride   NIES-477   葉緑体ゲノムの解読  new
  Plastid DNA (OR168112)
  Glass, S. E. et al. 2023. Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum.
• Microcystis aeruginosa   NIES-44   ゲノムの解読
  Whole-genome (BBPA00000000)
  Okano, K., Miyata, N., Ozaki, Y. 2015. Whole genome sequence of the non-microcystin-producing Microcystis aeruginosastrain NIES-44. GenomeA, 3, e00135-15.
• Microcystis aeruginosa   NIES-87   ゲノムの解読
  Whole-genome (BFAC00000000)
  Yamaguchi, H., Suzuki, S., Kawachi, M. 2018. Draft genome sequence of Microcystis aeruginosa NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 6, e01596-17.
• Microcystis aeruginosa   NIES-88   ゲノムの解読
  Whole-genome (JXYX00000000)
  Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M. 2016 A unique tryptophan c-prenyltransferase from the kawaguchipeptin biosynthetic pathway. Angew. Chem.-Int. Edit., 7, 3596-3599.
• Microcystis aeruginosa   NIES-98   ゲノムの解読
• Microcystis aeruginosa   NIES-102   ゲノムの解読
• Microcystis aeruginosa   NIES-298   Draft ゲノム解析終了
  Whole-genome (PRJNA91065)
  Rhee, JS. et al. 2012. Draft genome database construction from four strains (NIES-298, FCY-26, -27, and -28) of the Cyanobacterium Microcystis aeruginosa. J. Microbiol. Biotechnol., 22, 1208-1213.
• Microcystis aeruginosa   NIES-843   ゲノムの解読
  富栄養化した湖沼で大発生し、アオコを形成する代表的なシアノバクテリアで、単細胞でガス胞をもち、水面に浮遊、集積する。また、本株はミクロキスチンと呼ばれる肝臓毒をもっている。 かずさDNA研究所、筑波大学、国立環境研究所の共同研究チームによって、2007年にゲノムの完全解読が終了した。
  Microcystisのゲノムは約６００万塩基対からなる環状DNAで、タンパク質をつくる遺伝子は６,３２５個ある。トランスポゾンと呼ばれる「動く遺伝子」が多く、ゲノムの12％にも及んでいること、これとは対照的に、環境の変化に応答するセンサーの役割を果たすタンパク質や応答反応を制御する役割を果たすタンパク質をコードする遺伝子が極端に少ないことが特徴となっている。また、ミクロシスティスが生産する毒素「ミクロシスチン」の合成に関わる遺伝子群も、見つかっている。
  CyanoBase
• Microcystis aeruginosa   NIES-1211   ゲノムの解読
  Whole-genome (BEIV00000000)
  Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID).
• Microcystis aeruginosa   NIES-2481   ゲノムの解読
  Whole-genome (CP012375)
  Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2018 Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. J. Genomics, 6, 30-33.
• Microcystis aeruginosa   NIES-2549   ゲノムの解読
  Whole-genome (CP011304)
  Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID).
• Microcystis aeruginosa   NIES-3787   ゲノムの解読
  Whole-genome (BJCH00000000)
  Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).
• Microcystis aeruginosa   NIES-3804   ゲノムの解読
  Whole-genome (BJCI00000000)
  Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).
• Microcystis aeruginosa   NIES-3806   ゲノムの解読
  Whole-genome (BJCJ00000000)
  Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).
• Microcystis aeruginosa   NIES-3807   ゲノムの解読
  Whole-genome (BJCK00000000)
  Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).
• Microcystis aeruginosa   NIES-4325   ゲノムの解読
  Whole-genome (BJKP00000000)
  Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M. 2019 A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa. FEMS Mircobiol. Lett., 366, fnz190 (article ID).
• Microcystis aeruginosa   NIES-4234   ゲノムの解読
  Whole-genome (BDSG00000000)
  Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID).
• Microcystis aeruginosa   NIES-4285   ゲノムの解読
  Whole-genome (BIFY00000000)
  Tanabe, Y. & Yamaguchi, H. 2019 Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan). Microbiol Resour Announc., 8, e00001-19 (article ID).
• Micromonas pusilla   NIES-2672   ゲノムの解読
• Nephroselmis astigmatica   NIES-252   色素体
• Nephroselmis olivacea   NIES-484   色素体、ミトコンドリアのゲノムの解読
  原始的な緑色植物であるプラシノ藻類の仲間で、単細胞性、体は鱗片に覆われ、不等長の２鞭毛を持つ。ヘテロタリックで、有性生殖が知られている。
  Mitochondorial DNA (AF110138)
  Plastid DNA (AF137379)
• Nitzschia palea   NIES-2729   色素体、ミトコンドリアのゲノムの解読
  Mitochondrial DNA (AP018512)
  Plastid DNA (AP018511)
  
  Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.
• Nitzschia putrida   NIES-4239   ゲノムの解読
• Nitzschia sp.   NIES-3576   色素体、ミトコンドリアのゲノムの解読
  Mitochondrial DNA (AP018509)
  Plastid DNA (AP018508)
  Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.
• Nitzschia sp.   NIES-3581   ミトコンドリアゲノムの解読
  Mitochondrial DNA (AP018510)
  Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.
• Nodularia sp.   NIES-3585   ゲノムの解読
• Nostoc carneum   NIES-2107   ゲノムの解読
• Nostoc linckia   NIES-25   ゲノムの解読
• Nostoc punctiforme   NIES-2108   ゲノムの解読
• Nostoc sp.   NIES-2109   ゲノムの解読
• Nostoc sp.   NIES-2111   ゲノムの解読
• Nostoc sp.   NIES-3756   ゲノムの解読
  Whole-genome (AP017295)
  Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52.
• Nostoc sp.   NIES-4103   ゲノムの解読
• Oltmansiellopsis viridis   NIES-360   色素体、ミトコンドリアのゲノムの解読
  アオサ藻綱に属する海産の群体性緑藻で、4本鞭毛をもつ細胞が4個いかだ状に並んだ体制をもつ。
  Mitochondoria DNA (DQ365900)
  Plastid DNA (DQ291132)
• Oscillatoria rosea   NIES-208   ゲノムの解読
  Whole-genome (MRBY00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Parachlorella kessleri   NIES-2152   ゲノムの解読
  Whole-genome (BBXU00000000)
  
  Ota, S., Oshima, K., Yamazaki, T., Kim, S., Yu, Z., Yoshihara, M., Takeda, K., Takeshita, T., Hirata, A., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2016 Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure. Biotechnol. Biofuels, 9, 13 (article ID).
• Pelatocladus sp.   NIES-4106   ゲノムの解読
• Phormidium ambiguum   NIES-2119   ゲノムの解読
  Whole-genome (MRCE00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Planktothrix agardhii   NIES-204   ゲノムの解読
  Whole-genome (AP017991-AP017995)
  Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2020 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204^T and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101942 (article ID).
• Planktothrix agardhii   NIES-905   ゲノムの解読
  Whole-genome (BJCD00000000)
  Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).
• Pleodorina starrii   NIES-1363   Whole-genome、色素体、ミトコンドリアのゲノムの解読
  アオサ藻綱に属する海産の群体性緑藻で、4本鞭毛をもつ細胞が4個いかだ状に並んだ体制をもつ。
  Whole-genome (BRXT00000000)
  Mitochondrial DNA (JX977845)
  Plastid DNA (JX977846)
  
  Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in Pleodorina starrii. Commun. Biol., 6, 590 (article ID).
  Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797.
• Pleodorina starrii   NIES-4479   ゲノムの解読
  Whole-genome (BRXU00000000)
  Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in Pleodorina starrii. Commun. Biol., 6, 590 (article ID).
• Pleodorina starrii   NIES-4481   ゲノムの解読
  Whole-genome (BRXV00000000)
  Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in Pleodorina starrii. Commun. Biol., 6, 590 (article ID).
• Porphyridium purpureum   NIES-2140   色素体
• Prochlorococcus marinus   NIES-2087   ゲノムの解読
  Whole-genome (BX548174)
  Rocap, G. et al. 2003 Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature, 424, 1042-1047.
• Proteomonas sp.   NIES-1005   色素体
• Proteomonas sp.   NIES-1375   色素体
• Pycnococcus provasolii   NIES-2893   ゲノムの解読
  Whole-genome (BNJQ00000000)
  Makita, Y. et al. 2021 Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nat Commun 12, 3593 (article ID).
• Raphidiopsis curvata   NIES-932   ゲノムの解読
• Raphidocelis subcapitata   NIES-35   ゲノムの解読
  Whole-genome (BDRX00000000)
  Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M. 2018 Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Sci Rep, 8, 8058 (article ID).
• Rhodomonas sp.   NIES-1006   色素体
• Rhodomonas sp.   NIES-1730   色素体
• Rhodomonas sp.   NIES-2332   色素体
• Scenedesmus obliquus   NIES-2279   色素体
• Scytonema sp.   NIES-2130   ゲノムの解読
  Whole-genome (MRCF00000000)
  Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017 Draft genome sequences of nine cyanobacterial strains from diverse habitats. GenomeA, 5, e01676-16 (article ID).
• Sphaerospermopsis kisseleviana   NIES-73   ゲノムの解読
• Sphaerospermopsis reniformis   NIES-1949   ゲノムの解読
  Whole-genome (BJCE01000001)
  Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol Resour Announc., , e00605-19 (article ID).
• Spumella sp.   NIES-1846   色素体
• Stanieria sp.   NIES-3757   ゲノムの解読
• Symbiodinium minutum   NIES-3808   ゲノムの解読
  Whole-genome (BASF00000000)
  Shoguchi, E. et al. 2013. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
• Symbiodinium sp.   NIES-4076   ゲノムの解読
  Whole-genome (BGNK00000000)
  Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).
• Synechococcus leopoliensis   NIES-3277   ゲノムの解読
• Synechococcus sp.   NIES-970   ゲノムの解読
• Tetrabaena socialis   NIES-571   ゲノムの解読
• Thermosynechococcus elongatus   NIES-2133   ゲノムの解読
  単細胞性、非窒素固定型、最適増殖温度が57℃の好熱性シアノバクテリアで、大分県別府温泉から分離された。 2002年に、BP-1株としてゲノム解読が終了している。
  Thermosynechococcusのゲノムは、2,593,857塩基対からなる環状DNAで、タンパク質をコードする遺伝子は2,475個知られている。
  CyanoBase
• Thermosynechococcus vulcanus   NIES-2134   ゲノムの解読
• Tolypothrix tenuis   NIES-37   ゲノムの解読
• Triparma laevis f. inornata   NIES-2565   ゲノムの解読
  Whole-genome (BLQM00000000)
  Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N. 2020 Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean. Microbiol Resour Announc., 9, e00367-20 (article ID).
  Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).
• Triparma laevis f. inornata   NIES-3699   ゲノムの解読
  Whole-genome (BLQM00000000)
  Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).
• Triparma strigata   NIES-3701   ゲノムの解読
  Whole-genome (BRXY00000000)
  Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).
• Triparma verrucosa   NIES-3700   ゲノムの解読
  Whole-genome (BRXY00000000)
  Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).
• Volvox africanus   NIES-3780   ゲノムの解読
  Whole-genome (BNCO00000000)
  Yamamoto, K. et al. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).
• Volvox reticuliferus   NIES-3785   ゲノムの解読
  Whole-genome (BNCQ01000000)
  Yamamoto, K. et al. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).
• Volvox reticuliferus   NIES-3786   ゲノムの解読
  Whole-genome (BNCP01000000)
  Yamamoto, K. et al. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).
• Yamagishiella unicocca   NIES-3982   Whole-genome   ミトコンドリア
• Yamagishiella unicocca   NIES-3983   ゲノムの解読
• Unidentified pedinophyte   NIES-2566   ゲノムの解読

2. 分類・多様性情報

生命の系統樹

生命の系統樹の作成は、ナショナルバイオリソースプロジェクト（NBRP)藻類の活動の一環として行っています。