Strain number | NIES-716 | |||
---|---|---|---|---|
Phylum | Heterokontophyta | |||
Class | Raphidophyceae | |||
Scientific name | Haramonas dimorpha Horiguchi | |||
Synonym | ||||
Former name | ||||
Common name | ||||
Locality (Date of collection) | Daintree River, Australia (1991-09-21) | |||
Latitude / Longitude | / 145.46666666 | |||
Habitat (Isolation source) | Brackish water (Sediment) | |||
History | < Horiguchi, Takeo | |||
Isolator (Date of isolation) | Horiguchi, Takeo (1991-10-25) | |||
Identified by | Horiguchi, Takeo | |||
State of strain | Subculture; Unialgal; Clonal; Axenic[2023 Jul] | |||
Culture condition (Preculture condition) |
Medium:
f/2
;
ESM
Temperature: 20 C Light intensity: 10-17 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
Gene information | 18S rRNA ( AB365025 ) , ITS1-5.8S-ITS2 ( AB334370 ) , CO1 ( AB334516 AB445450 ) , GapC1 ( AB459523 ) , GapC2 ( AB459524 ) , petD ( AB280618 ) , psaA ( AB367952 ) , psbB ( AB280591 ) , psbC ( AB280597 ) , psbD ( AB280602 ) , rbcL ( AB280608 AB334443 ) , tufA ( AB367953 ) | |||
Cell size (min - max) | ||||
Organization | Unicellular; Flagellate | |||
Characteristics | Planktonic ; Benthic ; Authentic strain (Horiguchi 1996) | |||
Other strain no. | ||||
Remarks | Fragile species to transportation stresses; Read and agree "How to order 4.1"; Axenic | |||
Movie |
Reference |
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Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M.
2017
Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection.
Microb. Resour. Syst.,
33,
19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 344, 345, 346, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 767, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1327, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 Yang, EC., Boo, GH., Kim, HJ., Cho, SM., Boo, SM., Andersen, R. A., Yoon, HS. 2012 Supermatrix data highlight the phylogenetic relationships of photosynthetic Stramenopiles. Protist, 163, 217-231. Keywords: Heterokont algae; molecular phylogenetic analysis; multigene phylogeny; reduced flagellar clade; stramenochromes Strain(s): 293, 622, 716, 1863, 1864 PubMed: 22001261 DOI: 10.1016/j.protis.2011.08.001 Kamikawa, R., Masuda, I., Demura, M., Oyama, K., Yoshimatsu, S., Kawachi, M., Sako, Y. 2009 Mitochondrial group II introns in the Raphidophycean flagellate Chattonella spp. suggest a diatom-to-Chattonella lateral group II intron transfer. Protist, 160, 364-375. Keywords: Chattonella; cytochrome c oxidase subunit 1 (cox1); diatoms; group II intron; lateral transfer; Raphidophyceae Strain(s): 1, 2, 3, 14, 85, 86, 115, 118, 121, 161, 462, 557, 558, 603, 671, 716, 849, 1303, 1975, 1976, 2391 PubMed: 19346162 DOI: 10.1016/j.protis.2009.02.003 Takishita, K., Yamaguchi, H., Maruyama, T., Inagaki, Y. 2009 A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3 phosphate dehydrogenase genes in "chromalveolate" members. PLoS One, 4, e4737 (article ID). Strain(s): 15, 275, 706, 716 PubMed: 19270733 DOI: 10.1371/journal.pone.0004737 Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535. Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy Strain(s): 1, 2, 3, 5, 6, 9, 10, 14, 83, 84, 85, 113, 114, 116, 118, 146, 161, 293, 557, 561, 603, 671, 716, 849, 1974, 1975, 1976, 1977, 1978, 1980, 1981, 1986, 2383, 2391, 2405, 2406 DOI: 10.2216/08-98.1 Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138. Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure Strain(s): 716, 1870 DOI: 10.1111/j.1440-1835.2008.00493.x Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238. Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model Strain(s): 1, 15, 548, 670, 716 PubMed: 17591448 DOI: 10.1016/j.ympev.2007.05.003 Horiguchi, T. 1996 Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol. Res., 44, 143-150. Keywords: Haramonas dimorpha gen et sp. nov.; mangrove; Raphidophyceae; taxonomy; tubular invagination; ultrastructure Strain(s): 716 DOI: 10.1111/j.1440-1835.1996.tb00043.x |
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