Strain Data

A big image opens when the thumbnail is clicked.(nies-0096.jpg)

Strain number		NIES-96
Phylum		Chlorophyta
Class		Chlorophyceae
Scientific name		Desmodesmus sp.
Synonym
Former name		Formerly identified as Scenedesmus quadricauda, re-identified at NIES by DNA analysis
Common name		Green alga
Locality (Date of collection)		Lake Shoji, Yamanashi, Japan (1981-08-31)
Latitude / Longitude		35.4890967699 / 138.608906585
Habitat (Isolation source)		Freshwater (Lake water)
History		< TAC;
Isolator (Date of isolation)		Watanabe, Masayuki
Identified by		Re-identified by NIES
State of strain		Cryopreservation; Unialgal; Clonal; Axenic
Culture condition (Preculture condition)		Medium: C Temperature: 20 (25) C Light intensity: 4-10 (14-16) µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 3 M (14 D)
Gene information		atpB ( AB084305 ) , rbcL ( AB084332 ) , psaB ( AB084339 ) , CO1 ( AB011524 )
Cell size (min - max)		- 16 μm
Organization
Characteristics
Other strain no.		Other strain no. : TAC 51-3B (TAN-51-3B)
Remarks		Cryopreserved; Axenic
Movie

Reference
Gómez-Martínez, D., Bengtson, J., Nilsson, A. K., Clarke, A. K., Nilsson, R. H., Kristiansson, E., Corcoll, N. 2023 Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican. Sci. Total Environ., 875, 162604 (article ID). Keywords: Acclimation; Microalgae; Transcriptomics; Diflufenican; Carotenoids Strain(s): 96, 298 PubMed: 36878298 DOI: 10.1016/j.scitotenv.2023.162604 Kobayashi, N. & Yukumoto, M. 2017 Improvement of micro algae yield by culture condition optimization. The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary). Strain(s): 96 DOI: 10.20550/jiebiomassronbun.12.0_145 Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941. Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors Strain(s): 35, 94, 96, 151, 245, 424, 468, 763 PubMed: 17629547 DOI: 10.1016/j.chemosphere.2007.05.088 Oshimi, M., Fujimoto, N., Ohnishi, A., Suzuki, M., Akiba, M., Kunikane, S. 2005 Isolation of bacteria lysing musty odor producing alga Phormidium tenue and its lytic characteristics. J. Jpn. Soc. Wat. Environ., 28, 379-384 (in Japanese with English summary). Keywords: alga-lytic bacteria; musty odor; Phormidium tenue; Pseudomonas KA6 Strain(s): 96, 211, 227, 244, 298, 512, 817 DOI: 10.2965/jswe.28.379 Furusato, E., Asaeda, T., Manatunge, J. 2004 Tolerance for prolonged darkness of three phytoplankton species, Microcystis aeruginosa (Cyanophyceae), Scenedesmus quadricauda (Chlorophyceae), and Melosira ambigua (Bacillariophyceae). Hydrobiologia, 527, 153-162. Keywords: algal bloom; artificial circulation; community succession; darkness tolerance; phytoplankton Strain(s): 96, 298 DOI: 10.1023/B:HYDR.0000043198.08168.d3 Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55. Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection Strain(s): 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 50, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 73, 74, 75, 76, 77, 78, 79, 80, 81, 87, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 119, 120, 122, 123, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 137, 138, 139, 144, 147, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 162, 163, 164, 165, 166, 167, 168, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 224, 226, 227, 228, 229, 230, 231, 232, 241, 242, 243, 244, 245, 246, 248, 257, 259, 261, 263, 266, 267, 268, 287, 288, 289, 290, 294, 295, 297, 298, 299, 300, 301, 302, 303, 305, 306, 308, 309, 310, 312, 313, 329, 334, 337, 338, 339, 340, 341, 342, 349, 351, 359, 360, 361, 362, 375, 378, 379, 380, 382, 384, 385, 390, 394, 396, 397, 398, 415, 416, 418, 419, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 436, 437, 438, 439, 440, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 464, 468, 469, 474, 478, 479, 480, 481, 503, 504, 505, 506, 507, 509, 510, 512, 514, 515, 522, 523, 524, 527, 528, 529, 530, 531, 532, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 592, 593, 594, 595, 596, 597, 598, 604, 610, 628, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 672, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729 Nozaki, H., Onishi, K., Morita, E. 2002 Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). J. Mol. Evol., 55, 414-430. Keywords: ATP synthase β-subunit (atpB) gene; Chloromonas; gene evolution; large subunit of Rubisco (rbcL) gene; morphological evolution; P700 chlorophyll a-apoprotein A2 (psaB) gene; pyrenoid; Volvocales Strain(s): 96, 123, 144, 213, 418, 421, 425, 428, 432, 439, 446, 447, 456, 474, 522, 564, 566, 567, 569, 571, 574, 582, 653, 732, 851, 858, 861, 875, 882, 883, 968 PubMed: 12355262 DOI: 10.1007/s00239-002-2338-9 Furusato, E., Asaeda, T., Fukuwatari, T. 2001 Tolerance against prolonged darkness of three freshwater phytoplankton. J. Jpn. Soc. Wat. Environ., 1, 27-34 (in Japanese with English summary). Keywords: artificial circulation; phytoplankton; dark survival; community succession; Microcystis aeruginosa Strain(s): 96, 298 DOI: 10.2965/jswe.24.27 Nakai, S., Yamane, S., Hosomi, M. 2000 Algal growth inhibition effects of Myriophyllum spicatum-releasing four allelopathic polyphenols. J. Jpn. Soc. Wat. Environ., 23, 726-730 (in Japanese with English summary). Keywords: allelochemical; polyphenol; algae; concentration-dependent synergistic growth inhibition; autoxidation Strain(s): 35, 71, 87, 96, 512 Watanabe, K. I., Ehara, M., Inagaki, Y., Ohama, T. 1998 Distinctive origins of group I introns found in the COXI genes of three green algae. Gene, 213, 1-7. Keywords: Group I intron; Chlorella vulgaris; Scenedesmus quadricauda; Protosiphon botryoides; cytochrome c oxidase subunit I; intron homing; frameshift Strain(s): 96, 227 DOI: 10.1016/S0378-1119(98)00235-2 Hayashi-Ishimaru, Y., Ohama, T., Kawatsu, Y., Nakamura, K., Osawa, S. 1996 UAG is a sense codon in several chlorophycean mitochondria. Curr. Genet., 30, 29-33. Keywords: deviant genetic code; COXI; Chlorophyceaen mitochondria; release factor Strain(s): 96, 209, 227, 415 PubMed: 8662206 DOI: 10.1007/s002940050096 Yanagida, Y. 1992 An assay system for detecting the effects of weed killers, by using the green microalga Scenedesmus quadricauda [Bisyô ryokusô Scenedesmus quadricauda wo mochiita josôzai no eikyôhyôkahô nitsuite]. Report of Freshwater Fisheries Experiment Station Ibaraki Prefecture, No. 28, 124-127 (in Japanese). Strain(s): 96

Reference

Gómez-Martínez, D., Bengtson, J., Nilsson, A. K., Clarke, A. K., Nilsson, R. H., Kristiansson, E., Corcoll, N. 2023 Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican. Sci. Total Environ., 875, 162604 (article ID).
Keywords: Acclimation; Microalgae; Transcriptomics; Diflufenican; Carotenoids
Strain(s): 96, 298
PubMed: 36878298
DOI: 10.1016/j.scitotenv.2023.162604

Kobayashi, N. & Yukumoto, M. 2017 Improvement of micro algae yield by culture condition optimization. The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary).
Strain(s): 96
DOI: 10.20550/jiebiomassronbun.12.0_145

Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941.
Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors
Strain(s): 35, 94, 96, 151, 245, 424, 468, 763
PubMed: 17629547
DOI: 10.1016/j.chemosphere.2007.05.088

Oshimi, M., Fujimoto, N., Ohnishi, A., Suzuki, M., Akiba, M., Kunikane, S. 2005 Isolation of bacteria lysing musty odor producing alga Phormidium tenue and its lytic characteristics. J. Jpn. Soc. Wat. Environ., 28, 379-384 (in Japanese with English summary).
Keywords: alga-lytic bacteria; musty odor; Phormidium tenue; Pseudomonas KA6
Strain(s): 96, 211, 227, 244, 298, 512, 817
DOI: 10.2965/jswe.28.379

Furusato, E., Asaeda, T., Manatunge, J. 2004 Tolerance for prolonged darkness of three phytoplankton species, Microcystis aeruginosa (Cyanophyceae), Scenedesmus quadricauda (Chlorophyceae), and Melosira ambigua (Bacillariophyceae). Hydrobiologia, 527, 153-162.
Keywords: algal bloom; artificial circulation; community succession; darkness tolerance; phytoplankton
Strain(s): 96, 298
DOI: 10.1023/B:HYDR.0000043198.08168.d3

Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55.
Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection
Strain(s): 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 50, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 73, 74, 75, 76, 77, 78, 79, 80, 81, 87, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 119, 120, 122, 123, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 137, 138, 139, 144, 147, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 162, 163, 164, 165, 166, 167, 168, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 224, 226, 227, 228, 229, 230, 231, 232, 241, 242, 243, 244, 245, 246, 248, 257, 259, 261, 263, 266, 267, 268, 287, 288, 289, 290, 294, 295, 297, 298, 299, 300, 301, 302, 303, 305, 306, 308, 309, 310, 312, 313, 329, 334, 337, 338, 339, 340, 341, 342, 349, 351, 359, 360, 361, 362, 375, 378, 379, 380, 382, 384, 385, 390, 394, 396, 397, 398, 415, 416, 418, 419, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 436, 437, 438, 439, 440, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 464, 468, 469, 474, 478, 479, 480, 481, 503, 504, 505, 506, 507, 509, 510, 512, 514, 515, 522, 523, 524, 527, 528, 529, 530, 531, 532, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 592, 593, 594, 595, 596, 597, 598, 604, 610, 628, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 672, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729

Nozaki, H., Onishi, K., Morita, E. 2002 Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). J. Mol. Evol., 55, 414-430.
Keywords: ATP synthase β-subunit (atpB) gene; Chloromonas; gene evolution; large subunit of Rubisco (rbcL) gene; morphological evolution; P700 chlorophyll a-apoprotein A2 (psaB) gene; pyrenoid; Volvocales
Strain(s): 96, 123, 144, 213, 418, 421, 425, 428, 432, 439, 446, 447, 456, 474, 522, 564, 566, 567, 569, 571, 574, 582, 653, 732, 851, 858, 861, 875, 882, 883, 968
PubMed: 12355262
DOI: 10.1007/s00239-002-2338-9

Furusato, E., Asaeda, T., Fukuwatari, T. 2001 Tolerance against prolonged darkness of three freshwater phytoplankton. J. Jpn. Soc. Wat. Environ., 1, 27-34 (in Japanese with English summary).
Keywords: artificial circulation; phytoplankton; dark survival; community succession; Microcystis aeruginosa
Strain(s): 96, 298
DOI: 10.2965/jswe.24.27

Nakai, S., Yamane, S., Hosomi, M. 2000 Algal growth inhibition effects of Myriophyllum spicatum-releasing four allelopathic polyphenols. J. Jpn. Soc. Wat. Environ., 23, 726-730 (in Japanese with English summary).
Keywords: allelochemical; polyphenol; algae; concentration-dependent synergistic growth inhibition; autoxidation
Strain(s): 35, 71, 87, 96, 512

Watanabe, K. I., Ehara, M., Inagaki, Y., Ohama, T. 1998 Distinctive origins of group I introns found in the COXI genes of three green algae. Gene, 213, 1-7.
Keywords: Group I intron; Chlorella vulgaris; Scenedesmus quadricauda; Protosiphon botryoides; cytochrome c oxidase subunit I; intron homing; frameshift
Strain(s): 96, 227
DOI: 10.1016/S0378-1119(98)00235-2

Hayashi-Ishimaru, Y., Ohama, T., Kawatsu, Y., Nakamura, K., Osawa, S. 1996 UAG is a sense codon in several chlorophycean mitochondria. Curr. Genet., 30, 29-33.
Keywords: deviant genetic code; COXI; Chlorophyceaen mitochondria; release factor
Strain(s): 96, 209, 227, 415
PubMed: 8662206
DOI: 10.1007/s002940050096

Yanagida, Y. 1992 An assay system for detecting the effects of weed killers, by using the green microalga Scenedesmus quadricauda [Bisyô ryokusô Scenedesmus quadricauda wo mochiita josôzai no eikyôhyôkahô nitsuite]. Report of Freshwater Fisheries Experiment Station Ibaraki Prefecture, No. 28, 124-127 (in Japanese).
Strain(s): 96

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