Strain Data

Strain number		NIES-534
Phylum		Heterokontophyta
Class		Bacillariophyceae
Scientific name		Thalassionema nitzschioides (Grunow) Hustedt
Synonym
Former name
Common name		Pennate diatom
Locality (Date of collection)		Matoya Bay Mie Japan (1984-09-01)
Latitude / Longitude
Habitat (Isolation source)		Marine (Seawater)
History		< Sawaguchi, Tomohiro
Isolator (Date of isolation)		Sawaguchi, Tomohiro (1984-09-13)
Identified by		Sawaguchi, Tomohiro
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 15 C Light intensity: 12-15 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		atub ( AB766059 ) , EF-1A mRNA ( AB766032 )
Cell size (min - max)		- 29 μm
Organization		Unicellular
Characteristics
Other strain no.		Other strain no. : MBB-6
Remarks
Movie

Reference
Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 344, 345, 346, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 621, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 767, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1327, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391 Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID). Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas Strain(s): 417, 534, 1349, 1371, 1373, 1374 PubMed: 23800323 DOI: 10.1186/1471-2148-13-131 Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570. Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads Strain(s): 17, 350, 417, 534, 586, 1045, 1349 PubMed: 19577655 DOI: 10.1016/j.ympev.2009.06.016 Otsuki, A., Watanabe, M. M., Sugahara, K. 1987 Chlorophyll pigments in methanol extracts from ten axenic cultured diatoms and three green algae as determined by reverse phase HPLC with fluorometric detection. J. Phycol., 23, 406-414. Keywords: chlorophyll c complex; chlorophyll pigments; diatoms; field desorption mass spectrometry; methanol extracts; reverse phase HPLC Strain(s): 16, 56, 57, 71, 157, 225, 534 DOI: 10.1111/j.1529-8817.1987.tb02526.x

Reference

Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 344, 345, 346, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 621, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 767, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1327, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391

Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID).
Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas
Strain(s): 417, 534, 1349, 1371, 1373, 1374
PubMed: 23800323
DOI: 10.1186/1471-2148-13-131

Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570.
Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads
Strain(s): 17, 350, 417, 534, 586, 1045, 1349
PubMed: 19577655
DOI: 10.1016/j.ympev.2009.06.016

Otsuki, A., Watanabe, M. M., Sugahara, K. 1987 Chlorophyll pigments in methanol extracts from ten axenic cultured diatoms and three green algae as determined by reverse phase HPLC with fluorometric detection. J. Phycol., 23, 406-414.
Keywords: chlorophyll c complex; chlorophyll pigments; diatoms; field desorption mass spectrometry; methanol extracts; reverse phase HPLC
Strain(s): 16, 56, 57, 71, 157, 225, 534
DOI: 10.1111/j.1529-8817.1987.tb02526.x

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