Strain number | NIES-324 | |||
---|---|---|---|---|
Phylum | Heterokontophyta | |||
Class | Bacillariophyceae | |||
Scientific name | Skeletonema marinoi-dohrnii complex | |||
Synonym | ||||
Former name | Skeletonema costatum (Greville) Cleve | |||
Common name | Centric diatom | |||
Locality (Date of collection) | Osaka Bay Off Kobe, Hyogo, Japan (1985-07-02) | |||
Latitude / Longitude | ||||
Habitat (Isolation source) | Marine (Seawater) | |||
History | < Osaka Pref. Fish. Exp. St. | |||
Isolator (Date of isolation) | Yamochi, Susumu (1985-07-10) | |||
Identified by | Yamochi, Susumu | |||
State of strain | Subculture; Unialgal; Clonal; Axenic[2018 Feb] | |||
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 15 C Light intensity: 8 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
|||
Gene information | 18S rRNA ( AB488611 ) | |||
Cell size (min - max) | 3 - 10 μm | |||
Organization | Unicellular | |||
Characteristics | Red tide ; Test strain (Khanam et al. 2017) ; Planktonic ; DNA sequencing indicates this strain is included in Skeletonema marinoi/dohrnii clade | |||
Other strain no. | Other strain no. : Sk-85su | |||
Remarks | Axenic | |||
Movie |
Reference |
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Yamasaki, Y., Kameo, S., Wada, Y., Kitatsuji, S., Yuasa, K., Shikata, T.
2023
Toxicological risk assessment of harmful algal species using the rotifer exposure test.
Bull. Plankton Soc. Japan,
70,
52-61 (in Japanese with English summary).
Keywords: Brachionus plicatilis; Dinophyceae; harmful algal bloom species; lethal effect on rotifers; Raphidophyceae Strain(s): 1, 324 DOI: 10.24763/bpsj.70.2_52 Yamaguchi, H., Sumida, N., Matsukawa, K., Adachi, M., Tomaru, Y., Ishikawa, K., Hotta, J. 2023 Establishment of a simple method for cryopreservation of the marine diatoms, Chaetoceros and Phaeodactylum. J. Appl. Phycol., 33, 2285–2293. Keywords: CELLBANKER; Cryopreservation; Marine diatoms; Chaetoceros tenuissimus; Phaeodactylum tricornutum; Transgenic diatom Strain(s): 324, 3714, 3715 DOI: 10.1007/s10811-023-03040-w Onduka, T., Kono, K., Ito, M., Ohkubo, N., Hano, T., Ito, K., Mochida, K. 2020 Ecological risk assessment of an antifouling biocide triphenyl (octadecylamine) boron in the Seto Inland Sea, Japan. Mar. Pollut. Bull., 157, 111320 (article ID). Keywords: Algal growth inhibition test; Crustacean reproduction test; Early-life stage toxicity test; Species sensitivity distribution Strain(s): 324 PubMed: 32658685 DOI: 10.1016/j.marpolbul.2020.111320 Hikihara, R., Yamasaki, Y., Shikata, T., Nakayama, N., Sakamoto, S., Kato, S., Hatate, H., Tanaka, R. 2020 Analysis of phytosterol, fatty acid, and carotenoid composition of 19 microalgae and 6 bivalve species. J. Aquat. Food Prod. Technol., 29, 461-479. Keywords: Microalgae; bivalve; phytosterol; fucosterol; fatty acid Strain(s): 1, 10, 324 DOI: 10.1080/10498850.2020.1749744 Hamamoto, Y. & Honda, D. 2019 Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem. PLoS One, 14, e0208941 (article ID). Strain(s): 324, 3712 PubMed: 30625142 DOI: 10.1371/journal.pone.0208941 Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910. Strain(s): 8, 254, 274, 286, 324, 331, 353, 381, 494, 623, 624, 997, 1012, 1013, 1015, 1320, 1330, 1333, 1334, 1335, 1372, 1377, 1388, 1390, 1396, 1397, 1408, 1438, 1439, 1441, 1868, 1964, 2008, 2142, 2144, 2149, 2300, 2305, 2325, 2433, 2498, 2502, 2566, 2584, 2586, 2589, 2590, 2677, 2878, 3356, 3374, 3775 PubMed: 30809012 DOI: 10.1038/s41396-019-0377-0 Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H. 2017 Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton. ACS Omega, 2, 3175–3182. Keywords: Geological materials; Microbiology; Separation science; Toxicology; Water pollution Strain(s): 324 PubMed: 30023687 DOI: 10.1021/acsomega.7b00081 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 344, 345, 346, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 767, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1327, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 Kohira, M., Matsumoto, T., Yamada, Y., Nanba, N., Kado, R. 2017 Effects of hydrogen peroxide on phytoplanktons, seaweed gametophytes, marine harpacticoid copepod and striped barnacle larvae. Sessile Organisms, 34, 1-12 (in Japanese with English summary). Keywords: hydrogen peroxide; marine ecotoxicity; seaweed gametophytes; phytoplankton; zooplankton Strain(s): 235, 324, 586, 1375, 1429 DOI: 10.4282/sosj.34.1 Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y. 2017 Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex. Chemosphere, 175, 200-209. Keywords: Sinking rate; Thalassiosira pseudonana; Skeletonema marinoi-dohrnii complex; Diuron Strain(s): 324 PubMed: 28222374 DOI: 10.1016/j.chemosphere.2017.02.054 Shimasaki, Y., Tsuyama, M., Tasmin, R., Khanam, M. R. M., Qiu, X., Oshima, Y. 2015 Comparative study of toxicological responses of chlorophyllrelated parameters in the marine diatom Skeletonema sp. exposed to tributyltin and Irgarol. Jpn. J. Environ. Toxicol., 18, 1-10. Keywords: tributyltin; Irgarol; diatom; chlorophyll; photosynthesis Strain(s): 324 DOI: 10.11403/jset.18.1 Qiu, X., Shimasaki, Y., Yoshida, Y., Matsubara, T., Yamasaki, Y., Kawaguchi, M., Honda, M., Mouri, K., Nakajima, Y., Tasmin, R., Kuno, K., Kawamura, Y., Honjo, T., Oshima, Y. 2014 Allelopathic effects of Skeletonema spp. may influence interspecific competition and bloom formation of co–occurring harmful flagellates. J. Fac. Agr., Kyushu Univ., 59, 373-382. Strain(s): 1, 10, 324 Naito, K., Sakai, S., Fujinaga, S., Yoshinaga, I., Tanaka, M. 2014 Evolution of water quality at a tidal flat in the Ariake Sea by Algal Growth Potential test. J. life. Environ. Sci., 6, 17-28 (in Japanese with English summary). Keywords: Ariake Sea; AGP test; Nutrient; Iron; Microalgae Strain(s): 1, 324 Enomoto, J., Kimura, T., Nomura, Y., Kabayama, J., Maita, M. 2013 The safety of febantel for tiger puffer and its environmental impact. Nippon Suisan Gakkaishi, 79, 400-409 (in Japanese with English summary). Keywords: tiger puffer; febantel; Heterobothrium okamotoi Strain(s): 324 DOI: 10.2331/suisan.79.400 Onduka, T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of degradation products of the antifouling biocide pyridine triphenylborane to marine organisms. Arch. Environ. Contam. Toxicol., 65, 724-732. Strain(s): 324 PubMed: 23929384 DOI: 10.1007/s00244-013-9945-x Onduka,T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of the antifouling biocide Sea-Nine 211 to marine algae, crustacea, and a polychaete. Fish. Sci., 79, 999-1006. Keywords: Risk assessment; Ecological toxicity; Coastal area of Japan; Perinereis nuntia; Sediment toxicity test; No-observed-effect concentration Strain(s): 324 DOI: 10.1007/s12562-013-0678-6 Yamasaki, Y., Ohmichi, Y., Hirose, M., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2012 Low molecular weight allelochemicals produced by the diatom, Skeletonema costatum. Thalassas, 28, 9-17. Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum Strain(s): 10, 324 Onduka, T., Ojima, D., Kakuno, A., Mochida, K., Ito, K., Koyama, J., Fujii, K. 2012 Nitrated polycyclic aromatic hydrocarbons in the marine environment: acute toxicities for organisms at three trophic levels. Jpn. J. Environ. Toxicol., 15, 1-10. Keywords: alga; crustacean, fish, nitro-PAHs; predicted no effect concentrations Strain(s): 324 DOI: 10.11403/jset.15.1 Onduka, T., Kakuno, A., Kono, K., Ito, K., Mochida, K., Fujii, K. 2012 Toxicity of chlorothalonil to marine organisms. Fish. Sci., 78, 1301-1308. Keywords: Antifouling biocides; Toxicity; Early-life-stage Toxicity test; Predicted no-effect concentration Strain(s): 324 DOI: 10.1007/s12562-012-0562-9 Mochida, K., Onduka, T., Amano, H., Ito, M., Tanaka, H., Fujii, K. 2012 Use of species sensitivity distributions to predict no-effect concentrations of an antifouling biocide, pyridine triphenylborane, for marine organisms. Mar. Pollut. Bull., 64, 2807-2814. Keywords: Algal growth inhibition test; Bayesian inference; Crustacean immobilization test; Fish acute toxicity; Primary risk analysis Strain(s): 324 PubMed: 23044030 DOI: 10.1016/j.marpolbul.2012.09.007 Qiu, XC., Yamasaki, Y., Shimasaki, Y., Gunjikake, H., Honda, M., Kawagushi, M., Matsubara, T., Nagasoe, S., Etoh, T., Matsui, S., Honjo, T., Oshima, Y. 2012 Allelopathy of the raphidophyte Heterosigma akashiwo against the dinoflagellate Akashiwo sanguinea is mediated via allelochemicals and cell contact. Mar. Ecol. Prog. Ser., 446, 107-118. Keywords: Heterosigma akashiwo; Akashiwo sanguinea; Allelopathy; Polysaccharide−protein complex; Cell contact; Growth interaction; Growth simulation Strain(s): 10, 324 DOI: 10.3354/meps09476 Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T. 2010 Species-specific allelopathic effects of the diatom Skeletonema costatum. Thalassas, 27, 21-32. Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect Strain(s): 10, 324 Yamasaki, Y., Nagasoe, S., Tameishi, M., Shikata, T., Zou, Y., Jiang, Z., Matsubara, T., Shimasaki, Y., Yamaguchi, K., Oshima, Y., Honjo, T. 2010 The role of interactions between Prorocentrum minimum and Heterosigma akashiwo in bloom formation. Hydrobiologia, 641, 33-44. Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum Strain(s): 1, 10, 324 DOI: 10.1007/s10750-009-0052-y Onduka, T., Mochida, K., Harino, H., Ito, K., Kakuno, A., Fujii, K. 2010 Toxicity of metal pyrithione photodegradation products to marine organisms with indirect evidence for their presence in seawater. Arch. Environ. Contam. Toxicol., 58, 991-997. Strain(s): 324 PubMed: 19967345 DOI: 10.1007/s00244-009-9430-8 Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T. 2009 Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community. ISME J., 3, 808-817. Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum Strain(s): 10, 324 PubMed: 19322242 DOI: 10.1038/ismej.2009.24 Oh, S. J., Kim, D.-I., Sajima, T., Shimasaki, Y., Matsuyama, Y., Oshima, Y., Honjo, T., Yang, H.-S. 2008 Effects of irradiance of various wavelengths from light-emitting diodes on the growth of the harmful dinoflagellate Heterocapsa circularisquama and the diatom Skeletonema costatum. Fish. Sci., 74, 137-145. Keywords: Heterocapsa circularisquama; irradiance; light wavelengths; light-emitting diode; Skeletonema costatum Strain(s): 324 DOI: 10.1111/j.1444-2906.2007.01503.x Matsubara, T., Nagasoe, S., Yamasaki, Y., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2008 Inhibitory effects of centric diatoms on the growth of the dinoflagellate Akashiwo sanguinea. Nippon Suisan Gakkaishi, 74, 598-606 (in Japanese with English summary). Keywords: Akashiwo sanguinea; allelopathy; growth inhibition; centric diatoms Strain(s): 324 DOI: 10.2331/suisan.74.598 Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193. Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum Strain(s): 16, 17, 223, 323, 324 PubMed: 18042429 DOI: 10.1016/j.protis.2007.09.004 Yamasaki, Y., Nagasoe, S., Matsubara, T., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2007 Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo. Mar. Ecol. Prog. Ser., 339, 83-92. Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition Strain(s): 10, 324 DOI: 10.3354/meps339083 Fukao, T., Nishijima, T., Yamaguchi, H., Adachi, M. 2007 Utilization of urea by the 6 species of red tide phytoplankton. Bull. Plankton Soc. Japan, 54, 1-8 (in Japanese with English summary). Keywords: growth; red tide; phytoplankton; urea; uptake kinetics Strain(s): 1, 6, 237, 323, 324, 605 Hirano, T., Masho, R., Koizumi, D., Tabata, S., Suzuki, K., Sakabe, M., Nakano, Y., Sato, N., Sudo, R. 2006 Ecotoxicity testing of bioremediation agents for shoreline oil-spill clean up. Jpn. J. Environ. Toxicol., 9, 115-131. Keywords: ecotoxicity; bioremediation; oil-spill; acute toxicity; marine organisms Strain(s): 324 DOI: 10.11403/jset.9.115 Nagasoe, S., Toda, S., Shimasaki, Y., Osima, Y., Uchida, T., Honjo, T. 2006 Growth inhibition of Gyrodinium instriatum (Dinophyceae) by Skeletonema costatum (Bacillariophyceae). Afr. J. Mar. Sci., 28, 325-329. Keywords: allelopathy; Gyrodinium instriatum; Skeletonema costatum; species interaction Strain(s): 324 DOI: 10.2989/18142320609504171 Okumura, C., Hasegawa, H., Mizumoto, H., Maki, T., Ueda, K. 2004 Size fractionation of iron compounds in phytoplankton cultures in the presence of chelating ligands. Bunseki Kagaku, 53, 1215-1221 (in Japanese with English summary). Keywords: iron; speciation; chelating ligands; phytoplankton growth Strain(s): 324 DOI: 10.2116/bunsekikagaku.53.1215 Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M. 2004 Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton. Nippon Suisan Gakkaishi, 70, 123-130 (in Japanese with English summary). Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase Strain(s): 5, 324 DOI: 10.2331/suisan.70.123 Mitsutani, A., Yamasaki, I., Kitaguchi, H., Kato, J., Ueno, S., Ishida, Y. 2001 Analysis of algicidal proteins of a diatom-lytic marine bacterium Pseudoalteromonas sp. strain A25 by two-dimensional electrophoresis. Phycologia, 40, 286-291. Strain(s): 324 DOI: 10.2216/i0031-8884-40-3-286.1 Okumura, Y., Koyama, J., Takaku, H., Satoh, H. 2001 Influence of organic solvents on the growth of marine microalgae. Arch. Environ. Contam. Toxicol., 41, 123-128. Strain(s): 6, 324 PubMed: 11462135 DOI: 10.1007/s002440010229 Lee, S, Kato, J, Takiguchi, N. Kuroda, A., Ikeda, T., Mitsutani, A., Ohtake, H. 2000 Involvement of an extracellular protease in algicidal activity of the marine bacterium Pseudoalteromonas sp. strain A28. Appl. Environ. Microbiol., 66, 4334-4339. Strain(s): 324 PubMed: 11010878 DOI: 10.1128/AEM.66.10.4334-4339.2000 Fukami, K., Matsumoto, J., Kadota, T., Nakano, Y. 2000 Seasonal fluctuations of water quality of deep sea water and the relationship to the growth potential of a microalga. Deep Ocean Water Research, 1, 27-31 (in Japanese with English summary). Keywords: Deep seawater; water quality; inorganic nutrients; AGP; seasonal fluctuation; upwelling Strain(s): 324 DOI: 10.11174/dowas2000.1.1_27 Okamura, K. 1992 Growth characteristics of Skeletonema costatum for algal growth potential. Kanagawa-ken Kankyô Kagaku Sentâ Kenkyû Hôkoku, 15, 12-15 (in Japanese with English title). Strain(s): 324 |
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