| Strain number | NIES-4077 | |||
|---|---|---|---|---|
| Phylum | Dinophyta | |||
| Class | Dinophyceae | |||
| Scientific name | Cladocopium sp. | |||
| Synonym | ||||
| Former name | Formerly identified as Symbiodinium sp., named based on LaJeunesse et al. 2018[2019 Aug] | |||
| Common name | Dinoflagellate ; Zooxanthellae | |||
| Locality (Date of collection) | Okinawa, Japan | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Marine (Cardiid clam （Fragum sp.）) | |||
| History | < Shoguchi, Eiichi < Hidaka, Michio < Yamasu, Terufumi | |||
| Isolator (Date of isolation) | Yamasu, Terufumi | |||
| Identified by | Hidaka, Michio | |||
| State of strain | Subculture; Clonal; Axenic[2024 Dec] | |||
|
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 20 C Light intensity: 6 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 2 M |
|||
| Gene information | Whole-genome ( PRJDB3243 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Symbiotic (cockle) ; Genome decoded strain (Shoguchi et al. 2018) ; Clade C | |||
| Other strain no. | Other strain no. : Y-103 | |||
| Remarks | Axenic | |||
| Movie | ||||
| Reference |
|---|
|
Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G.
2024
Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies.
Environ. Microbiol. Rep.,
16,
e13238 (article ID).
Strain(s): 2907, 3808, 4076, 4077 PubMed: 38444256 DOI: 10.1111/1758-2229.13238 Takagi, T., Aoyama, K., Motone, K., Aburaya, S., Yamashiro, H., Miura, N., Inoue, K. 2023 Mutualistic interactions between dinoflagellates and pigmented bacteria mitigate environmental stress. Microbiol. Spectr., 11, e0246422 (article ID). Strain(s): 4077 PubMed: 36651852 DOI: 10.1128/spectrum.02464-22 Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S. 2021 Coral symbionts evolved a functional polycistronic flavodiiron gene. Photosynth. Res., 151, 113–124. Keywords: Flavodiiron proteins; Polycistronic gene; Gene fusion; Coral symbionts; Evolution Strain(s): 4077 PubMed: 34309771 DOI: 10.1007/s11120-021-00867-7 Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID). Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression Strain(s): 4076, 4077 PubMed: 33182359 DOI: 10.3390/microorganisms8111759 Chen, Y., González-Pech, R. A., Stephens, T. G., Bhattacharya, D., Chan, C. X. 2020 Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes. J. Phycol., 56, 6-10. Strain(s): 4077 PubMed: 31713873 DOI: 10.1111/jpy.12947 Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID). Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis Strain(s): 4076, 4077 PubMed: 29898658 DOI: 10.1186/s12864-018-4857-9 |
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