Strain Data

Strain number		NIES-4074
Phylum		Cyanophyta
Class		Cyanophyceae
Scientific name		Cylindrospermum sp.
Synonym
Former name
Common name		Blue-green alga ; Cyanobacteria
Locality (Date of collection)		Yokohama, Kanagawa, Japan (2004--)
Latitude / Longitude		35.36 / 139.56
Habitat (Isolation source)		Terrestrial (Soil)
History		< Katoh, Hiroshi
Isolator (Date of isolation)		Katoh, Hiroshi (2012--)
Identified by		Katoh, Hiroshi
State of strain		Subculture; Unialgal; Clonal; Axenic[2017 May]
Culture condition (Preculture condition)		Medium: MDM (agar) Temperature: 20 C Light intensity: 9-12 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		Whole-genome ( AP018273 ) , nearly complete genome ( AP018269 ) , 16S rRNA ( AB694931 ) , Plasmid DNA ( AP018270-AP018272 )
Cell size (min - max)
Organization
Characteristics		Nitrogen fixation　 (aerobic condition, Modified BG-11₀ medium, N-Free medium) ; Genome decoded strain
Other strain no.		Other strain no. : YK2-01
Remarks		Axenic
Movie

Reference
Casero, M. C., Herrero, M. Á., De la Roche, J. P., Quesada, A., Velázquez, D., Cirés, S. 2024 Effect of salinity on scytonemin yield in endolithic cyanobacteria from the Atacama Desert. Sci Rep, 14, 9731 (article ID). Strain(s): 21, 25, 3756, 4074 PubMed: 38679613 DOI: 10.1038/s41598-024-60499-4 Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID). Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106 PubMed: 38711016 DOI: 10.1186/s12862-024-02244-z Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH₄⁺ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611. Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism Strain(s): 25, 50, 204, 267, 843, 970, 981, 2107, 2134, 2135, 2481, 2549, 3709, 3754, 3756, 3757, 4074 PubMed: 35595516 DOI: 10.1093/jxb/erac219 Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775. Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation Strain(s): 21, 23, 25, 26, 267, 2108, 2111, 3756, 4073, 4074, 4075, 4103 PubMed: 35851984 DOI: 10.1111/gbi.12514 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Magonono, M., Oberholster, P. J., Addmore, S., Stanley, M., Gumbo, J. R. 2018 The presence of toxic and non-toxic Cyanobacteria in the sediments of the Limpopo River Basin: Implications for human health. Toxins, 10, 269 (article ID). Keywords: cyanobacteria; cyanotoxins; nutrient enrichment; akinetes; harmful algal blooms; PCR; phylogenetic analyses Strain(s): 4074, 4103 PubMed: 29970791 DOI: 10.3390/toxins10070269

Reference

Casero, M. C., Herrero, M. Á., De la Roche, J. P., Quesada, A., Velázquez, D., Cirés, S. 2024 Effect of salinity on scytonemin yield in endolithic cyanobacteria from the Atacama Desert. Sci Rep, 14, 9731 (article ID).
Strain(s): 21, 25, 3756, 4074
PubMed: 38679613
DOI: 10.1038/s41598-024-60499-4

Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID).
Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA
Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106
PubMed: 38711016
DOI: 10.1186/s12862-024-02244-z

Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH₄⁺ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611.
Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism
Strain(s): 25, 50, 204, 267, 843, 970, 981, 2107, 2134, 2135, 2481, 2549, 3709, 3754, 3756, 3757, 4074
PubMed: 35595516
DOI: 10.1093/jxb/erac219

Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775.
Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation
Strain(s): 21, 23, 25, 26, 267, 2108, 2111, 3756, 4073, 4074, 4075, 4103
PubMed: 35851984
DOI: 10.1111/gbi.12514

Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID).
Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy
Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106
PubMed: 34677568
DOI: 10.1093/dnares/dsab024

MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451.
Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106
PubMed: 31899489
DOI: 10.1093/molbev/msz308

Magonono, M., Oberholster, P. J., Addmore, S., Stanley, M., Gumbo, J. R. 2018 The presence of toxic and non-toxic Cyanobacteria in the sediments of the Limpopo River Basin: Implications for human health. Toxins, 10, 269 (article ID).
Keywords: cyanobacteria; cyanotoxins; nutrient enrichment; akinetes; harmful algal blooms; PCR; phylogenetic analyses
Strain(s): 4074, 4103
PubMed: 29970791
DOI: 10.3390/toxins10070269

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