| Strain number | NIES-3715 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Chaetoceros tenuissimus Meunier | |||
| Synonym | ||||
| Former name | ||||
| Common name | Centric diatom | |||
| Locality (Date of collection) | off Maikohama, Harima-nada, Seto Inland Sea, Hyogo Japan (2002-08-10) | |||
| Latitude / Longitude | 34.62888888 / 135.03525 | |||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < Kimura, Kei < Tomaru, Yuji | |||
| Isolator (Date of isolation) | Tomaru, Yuji (2002-08-11) | |||
| Identified by | Suzuki, Hidekazu; Nagumo, Tamotsu | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
mSWM-3
Temperature: 15 C Light intensity: 9-11 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 21 D |
|||
| Gene information | 18S rRNA ( AB847417 ) | |||
| Cell size (min - max) | ||||
| Organization | Unicellular | |||
| Characteristics | Red tide ; The virus which infects with this diatom strain has been reported (Shirai et al. 2008). | |||
| Other strain no. |
Other collection strain no. : CCAP 1010/43
Other strain no. : 2-10 |
|||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
| Reference |
|---|
|
Tomaru, Y., Kimura, K.
2020
Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms.
Diversity-Basel,
12,
225 (article ID).
Keywords: marine diatom; Chaetoceros tenuissimus; Chaetoceros setoensis; host-virus specificity; RdRp; ssRNA virus; ssDNA virus; viral genome Strain(s): 3712, 3714, 3715 DOI: 10.3390/d12060225 Hano, T., Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID). Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase Strain(s): 3715 PubMed: 31499295 DOI: 10.1016/j.jchromb.2019.121779 Tomaru, Y., Toyoda, K., Kimura, K. 2018 Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805, 221-230. Keywords: Algal viruses; Primary producers; Marine algae; Real-time quantitative PCR; Restingstage cells Strain(s): 3714, 3715 DOI: 10.1007/s10750-017-3306-0 Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID). Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle Strain(s): 3715 DOI: 10.3389/fmars.2018.00167 Tomaru, Y., Shirai, Y., Toyoda, K., Nagasaki, K. 2011 Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat. Microb. Ecol., 64, 175-184. Keywords: Bacilladnavirus; Chaetoceros; Diatom; ssDNA; Virus; Rod-shaped particle Strain(s): 3714, 3715 DOI: 10.3354/ame01517 Toyoda, K., Nagasaki, K., Tomaru, Y. 2010 Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 5, 56-61. Keywords: Chaetoceros tenuissimus; detection; diatom; enumeration; TaqMan-based real-time PCR Strain(s): 3715 DOI: 10.3800/pbr.5.56 Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027. Strain(s): 3715 PubMed: 18469125 DOI: 10.1128/AEM.00509-08 |
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