Strain number | NIES-3715 | |||
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Phylum | Heterokontophyta | |||
Class | Bacillariophyceae | |||
Scientific name | Chaetoceros tenuissimus Meunier | |||
Synonym | ||||
Former name | ||||
Common name | Centric diatom | |||
Locality (Date of collection) | off Maikohama, Harima-nada, Seto Inland Sea, Hyogo Japan (2002-08-10) | |||
Latitude / Longitude | 34.62888888 / 135.03525 | |||
Habitat (Isolation source) | Marine (Seawater) | |||
History | < Kimura, Kei < Tomaru, Yuji | |||
Isolator (Date of isolation) | Tomaru, Yuji (2002-08-11) | |||
Identified by | Suzuki, Hidekazu; Nagumo, Tamotsu | |||
State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
Culture condition (Preculture condition) |
Medium:
mSWM-3
Temperature: 15 C Light intensity: 9-11 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 21 D |
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Gene information | 18S rRNA ( AB847417 ) | |||
Cell size (min - max) | ||||
Organization | Unicellular | |||
Characteristics | Red tide ; The virus which infects with this diatom strain has been reported (Shirai et al. 2008). | |||
Other strain no. |
Other collection strain no. : CCAP 1010/43
Other strain no. : 2-10 |
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Remarks | Cryopreserved; Axenic | |||
Movie |
Reference |
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Tomaru, Y., Yamaguchi, H., Miki, T.
2021
Growth rate-dependent cell death of diatoms due to viral infection and their subsequent coexistence in a semi-continuous culture system.
Microbes Environ.,
36,
Keywords: diatom; population dynamics; viral infection Strain(s): 3715 PubMed: 33390375 DOI: 10.1264/jsme2.ME20116 Tomaru, Y., Kimura, K. 2020 Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms. Diversity-Basel, 12, 225 (article ID). Keywords: marine diatom; Chaetoceros tenuissimus; Chaetoceros setoensis; host-virus specificity; RdRp; ssRNA virus; ssDNA virus; viral genome Strain(s): 3712, 3714, 3715 DOI: 10.3390/d12060225 Hano, T., Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID). Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase Strain(s): 3715 PubMed: 31499295 DOI: 10.1016/j.jchromb.2019.121779 Tomaru, Y., Toyoda, K., Kimura, K. 2018 Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805, 221-230. Keywords: Algal viruses; Primary producers; Marine algae; Real-time quantitative PCR; Restingstage cells Strain(s): 3714, 3715 DOI: 10.1007/s10750-017-3306-0 Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID). Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle Strain(s): 3715 DOI: 10.3389/fmars.2018.00167 Tomaru, Y., Shirai, Y., Toyoda, K., Nagasaki, K. 2011 Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat. Microb. Ecol., 64, 175-184. Keywords: Bacilladnavirus; Chaetoceros; Diatom; ssDNA; Virus; Rod-shaped particle Strain(s): 3714, 3715 DOI: 10.3354/ame01517 Toyoda, K., Nagasaki, K., Tomaru, Y. 2010 Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 5, 56-61. Keywords: Chaetoceros tenuissimus; detection; diatom; enumeration; TaqMan-based real-time PCR Strain(s): 3715 DOI: 10.3800/pbr.5.56 Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027. Strain(s): 3715 PubMed: 18469125 DOI: 10.1128/AEM.00509-08 |
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