| Strain number | NIES-3581 | |||
|---|---|---|---|---|
| Phylum | Heterokontophyta | |||
| Class | Bacillariophyceae | |||
| Scientific name | Nitzschia sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | Pennate diatom | |||
| Locality (Date of collection) | Funaura, Taketomi, Okinawa, Japan (2012-02-04) | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Brackish water (Plant (Mangrove)) | |||
| History | < Nakayama, Takeshi < Kamikawa, Ryoma | |||
| Isolator (Date of isolation) | Kamikawa, Ryoma (2012-02-11) | |||
| Identified by | Mayama, Shigeki | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
ESM + CB-V
Temperature: 20 C Light intensity: 0 µmol photons/m2/sec, Duration: 14 D |
|||
| Gene information | Mitochondrial DNA ( AP018510 ) , 28S rRNA ( AB899689 ) , 16S rRNA ( AB899709 ) | |||
| Cell size (min - max) | 10 - μm | |||
| Organization | Unicellular | |||
| Characteristics | Heterotrophic ; Benthic ; Nonphotosynthetic plastids ; Genome decoded strain (Kamikawa et al. 2018) | |||
| Other strain no. | Other strain no. : IriIs04 | |||
| Remarks | Cryopreserved; Axenic; Nonphotosynthetic plastids | |||
| Movie | ||||
| Reference |
|---|
|
Onyshchenko, A., Roberts, W. R., Ruck, E. C., Lewis, J. A., Alverson, A. J.
2021
The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis.
New Phytol.,
232,
1750-1764.
Keywords: apochloritic; B-ketoadipate pathway; Entner-Doudoroff Pathway; glycolysis; lignin; mixotrophy; oxidative pentose phosphate pathway; photosynthesis Strain(s): 3581 PubMed: 34379807 DOI: 10.1111/nph.17673 Moog, D., Nozawa, A., Tozawa, Y., Kamikawa, R. 2020 Substrate specifcity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red algaderived complex plastids. Sci Rep, 10, 1167 (article ID). Strain(s): 3581 PubMed: 31980711 DOI: 10.1038/s41598-020-58082-8 Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J. 2019 A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta). Am. J. Bot., 106, 560-572. Keywords: Nitzschia; apochloritic; chloroplast; photosynthesis; phylogeny; plastid Strain(s): 3581 PubMed: 30958893 DOI: 10.1002/ajb2.1267 Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361. Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1 Strain(s): 2729, 3576, 3581 PubMed: 29803116 DOI: 10.1016/j.protis.2018.04.009 Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y. 2015 Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae). Phycol. Res., 63, 19-28. Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA Strain(s): 3576, 3577, 3578, 3579, 3580, 3581 DOI: 10.1111/pre.12072 Kamikawa, R., Tanifuji, Ishikawa, G. S., Ishii, K., Matsuno, Y., Onodera, N. T., Ishida, K-I., Hashimoto, T., Miyashita, H., Mayama, S., Inagaki, Y. 2015 Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes. Mol. Biol. Evol., 32, 2598-2604. Keywords: apochlorotic diatoms; nonphotosynthetic plastid genome; genome reduction; ATP synthase complex; Twin-arginine translocator Strain(s): 3581 PubMed: 26048548 DOI: 10.1093/molbev/msv134 |
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