Strain number | NIES-2549 | |||
---|---|---|---|---|
Phylum | Cyanophyta | |||
Class | Cyanophyceae | |||
Scientific name | Microcystis aeruginosa (Kützing) Lemmermann | |||
Synonym | Microcystis ichthyoblabe Kützing; Microcystis novacekii (Komárek) Compère; Microcystis viridis (A.Brown) Lemmermann; Microcystis wesenbergii Komárek | |||
Former name | ||||
Common name | Blue-green alga ; Cyanobacteria | |||
Locality (Date of collection) | Lake Kasumigaura, Omitama, Ibaraki, Japan (2005-07-17) | |||
Latitude / Longitude | 36.16083333 / 140.31361111 | |||
Habitat (Isolation source) | Freshwater (Lake water) | |||
History | < Tanabe, Yuuhiko | |||
Isolator (Date of isolation) | Tanabe, Yuuhiko (2005-07-25) | |||
Identified by | Tanabe, Yuuhiko | |||
State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2015 Feb] | |||
Culture condition (Preculture condition) |
Medium:
MA
Temperature: 20 C Light intensity: 15-25 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
|||
Gene information | Whole-genome ( CP011304 ) | |||
Cell size (min - max) | ||||
Organization | ||||
Characteristics | Cyanobacterial water bloom (aoko) ; Indicator ; ST120 (Tanabe et al. 2009a) ; Genome decoded strain (Yamaguchi et al. 2015) | |||
Other strain no. | Other strain no. : Ks05TA38 | |||
Remarks | Cryopreserved; Axenic | |||
Movie |
Reference |
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Kim, E.-J., Doh, H., Eyun, S.
2024
The occurrence of positive selection on BicA transporter of Microcystis aeruginosa.
Ecotox. Environ. Safe.,
283,
116795 (article ID).
Keywords: BicA transport; Positive selection; CCMs; Microcystis aeruginosa; PAML Strain(s): 298, 843, 2481, 2549 PubMed: 39083868 DOI: 10.1016/j.ecoenv.2024.116795 Kim, M., Jung, J., Kim, W., Park, Y., Jeon, C. O., Park, W. 2024 Extensive genomic rearrangement of catalase-Less cyanobloom-forming Microcystis aeruginosa in freshwater ecosystems. J. Microbiol., 62, 933–950. Keywords: Comparative genomics; Cyanobacterial bloom; Cyanobacterial metabolism; Genome plasticity; Microcystin; Oxidative stress Strain(s): 88, 102, 204, 298, 843, 2481, 2549 PubMed: 39377859 DOI: 10.1007/s12275-024-00172-7 Entfellner, E., Baumann, K. B. L., Edwards, C., Kurmayer, R. 2023 High structural diversity of aeruginosins in bloom-Forming cyanobacteria of the genus Planktothrix as a consequence of multiple recombination events. Mar. Drugs, 21, 638 (article ID). Keywords: horizontal gene transfer; chemical diversification; freshwater ecotypes; shallow waterbodies; deep waterbodies Strain(s): 98, 102, 204, 298, 843, 2481, 2549 PubMed: 38132959 DOI: 10.3390/md21120638 Cao, H., Xu, D., Zhang, T., Ren, Q., Xiang, L., Ning, C., Zhang, Y., Gao, R. 2022 Comprehensive and functional analyses reveal the genomic diversity and potential toxicity of Microcystis. Harmful Algae, 113, 102186 (article ID). Keywords: Microcystis; Pangenome; Toxicity; Diversity; Classification Strain(s): 88, 102, 298, 843, 2481, 2549 PubMed: 35287927 DOI: 10.1016/j.hal.2022.102186 Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH4+ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611. Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism Strain(s): 25, 50, 204, 267, 843, 970, 981, 2107, 2134, 2135, 2481, 2549, 3709, 3754, 3756, 3757, 4074 PubMed: 35595516 DOI: 10.1093/jxb/erac219 Valadez-Cano, C., Hawkes, K., Calvaruso, R., Reyes-Prieto, A., Lawrence, J. 2022 Amplicon-based and metagenomic approaches provide insights into toxigenic potential in understudied Atlantic Canadian lakes Facets, 7, 194-214. Keywords: Toxic cyanobacteria; toxic blooms, cyanotoxins; microcystin; Microcystis aeruginosa; bioactive metabolites Strain(s): 843, 2549 DOI: 10.1139/facets-2021-0109 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Chen, M., Tian, L.-L., Ren, C.-Y., Xu, C.-Y., Wang, Y.-Y., Li, L. 2019 Extracellular polysaccharide synthesis in a bloom-forming strain of Microcystis aeruginosa: implications for colonization and buoyancy. Sci Rep, 9, 1251 (article ID). Strain(s): 87, 88, 98, 204, 298, 843, 2481, 2549 PubMed: 30718739 DOI: 10.1038/s41598-018-37398-6 Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID). Keywords: Microcystis; bloom; salt tolerance; sucrose; genomics; brackish water; horizontal gene trasnfer; ecotype Strain(s): 44, 87, 88, 89, 90, 91, 98, 99, 100, 101, 102, 103, 104, 105, 107, 108, 109, 112, 298, 299, 478, 604, 843, 901, 1050, 1052, 1059, 1063, 1067, 1069, 1070, 1075, 1076, 1085, 1093, 1094, 1098, 1100, 1101, 1102, 1104, 1105, 1106, 1107, 1108, 1113, 1114, 1115, 1122, 1128, 1130, 1131, 1132, 1134, 1139, 1141, 1142, 1143, 1144, 1150, 1170, 1174, 1175, 1176, 1177, 1179, 1181, 1183, 1185, 1211, 1213, 1214, 1215, 1232, 1234, 1238, 1239, 1252, 2088, 2090, 2091, 2465, 2466, 2467, 2468, 2469, 2470, 2471, 2472, 2473, 2475, 2476, 2477, 2478, 2479, 2480, 2481, 2482, 2483, 2484, 2485, 2486, 2487, 2488, 2489, 2490, 2491, 2492, 2494, 2495, 2546, 2547, 2548, 2549, 2550, 2551, 2552, 2553, 2554, 2555, 2556, 2557, 2558, 2559, 2560, 2561, 2592, 2594, 2595, 2596, 2597, 2598, 2599, 2600, 2601, 2602, 2603, 2604, 2605, 2606, 2607, 2608, 2610, 2611, 2612, 2613, 2617, 2618, 2619, 2620, 2621, 2622, 2623, 2624, 2625, 2626, 2628, 2629, 4234 PubMed: 29922255 DOI: 10.3389/fmicb.2018.01150 Klemenčič, M., Funk, C. 2018 Structural and functional diversity of caspase homologues in non-metazoan organisms. Protoplasma, 255, 387-397. Strain(s): 44, 843, 2549 PubMed: 28744694 DOI: 10.1007/s00709-017-1145-5 Lin, W., Zhao, D., Luo, J. 2018 Distribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth. J. Appl. Phycol., 30, 839-850. Keywords: Alkaline; phosphatase; Cyanobacteria; Dissolved organic phosphorus; Distribution Strain(s): 30, 39, 81, 2130, 2549, 3756 DOI: 10.1007/s10811-017-1267-3 Zhao, L., Song, Y., Li, L., Gan, N., Brand, JJ., Song, L. 2018 The highly heterogeneous methylated genomes and diverserestriction-modification systems of bloom-forming Microcystis. Harmful Algae, 75, 87-93. Keywords: Cyanobacterial bloom; DNA methylation modification; Epigenetics; Methyltransferase; Microcystis; SMRT Strain(s): 843, 2549 PubMed: 29778228 DOI: 10.1016/j.hal.2018.04.005 Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID). Strain(s): 2549 PubMed: 26021928 DOI: 10.1128/genomeA.00551-15 Tanabe, Y. & Watanabe, M. M. 2011 Local expansion of a panmictic lineage of water bloom-forming cyanobacterium Microcystis aeruginosa. PLoS One, 6, e17085 (article ID). Strain(s): 44, 87, 88, 89, 90, 91, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 298, 299, 478, 604, 843, 901, 1050, 1051, 1052, 1053, 1054, 1055, 1056, 1057, 1058, 1059, 1060, 1061, 1062, 1063, 1064, 1065, 1066, 1067, 1068, 1069, 1070, 1072, 1075, 1076, 1077, 1085, 1090, 1091, 1092, 1093, 1094, 1095, 1096, 1097, 1098, 1100, 1101, 1102, 1103, 1104, 1105, 1106, 1107, 1108, 1113, 1114, 1115, 1122, 1123, 1124, 1125, 1126, 1127, 1128, 1129, 1130, 1131, 1132, 1133, 1134, 1135, 1136, 1137, 1138, 1139, 1140, 1141, 1142, 1143, 1144, 1145, 1146, 1147, 1148, 1149, 1150, 1151, 1152, 1153, 1155, 1156, 1157, 1159, 1160, 1161, 1162, 1163, 1164, 1170, 1171, 1172, 1173, 1174, 1175, 1176, 1177, 1179, 1180, 1181, 1183, 1184, 1185, 1186, 1209, 1211, 1213, 1214, 1215, 1216, 1217, 1218, 1219, 1220, 1221, 1222, 1223, 1224, 1225, 1226, 1227, 1228, 1229, 1230, 1231, 1232, 1233, 1234, 1235, 1236, 1237, 1238, 1239, 1240, 1241, 1242, 1243, 1244, 1245, 1251, 1252, 1253, 1254, 2088, 2089, 2090, 2091, 2465, 2466, 2467, 2468, 2469, 2470, 2471, 2472, 2473, 2474, 2475, 2476, 2477, 2478, 2479, 2480, 2481, 2482, 2483, 2484, 2485, 2486, 2487, 2488, 2489, 2490, 2491, 2492, 2493, 2494, 2495, 2496, 2542, 2543, 2544, 2545, 2546, 2547, 2548, 2549, 2550, 2551, 2552, 2553, 2554, 2555, 2556, 2557, 2558, 2559, 2560, 2561, 2591, 2592, 2593, 2594, 2595, 2596, 2597, 2598, 2599, 2600, 2601, 2602, 2603, 2604, 2605, 2606, 2607, 2608, 2609, 2610, 2611, 2612, 2613, 2617, 2618, 2619, 2620, 2621, 2622, 2623, 2624, 2625, 2626, 2627, 2628, 2629 PubMed: 21390221 DOI: 10.1371/journal.pone.0017085 Tanabe, Y. 2010 "Biological species recognition" within the toxic cyanobacterium Microcystis. IFO Res. Commun., 24, 69-79 (in Japanese with English summary). Keywords: Microcystis; MLST; microcystin synthetase; recombination; biological species recognition Strain(s): 2465, 2466, 2467, 2468, 2469, 2470, 2471, 2472, 2473, 2474, 2475, 2476, 2477, 2478, 2479, 2480, 2481, 2482, 2483, 2484, 2485, 2486, 2487, 2488, 2489, 2490, 2491, 2492, 2493, 2494, 2495, 2496, 2542, 2543, 2544, 2545, 2546, 2547, 2548, 2549, 2550, 2551, 2552, 2553, 2554, 2555, 2556, 2557, 2558, 2559, 2560, 2561, 2591, 2592, 2593, 2594, 2595, 2596, 2597, 2598, 2599, 2600, 2601, 2602, 2603, 2604, 2605, 2606, 2607, 2608, 2609, 2610, 2611, 2612, 2613, 2617, 2618, 2619, 2620, 2621, 2622, 2623, 2624, 2625, 2626, 2627, 2628, 2629 Tanabe, Y., Kasai, F., Watanabe, M. M. 2009a Fine-scale spatial and temporal genetic differentiation of water bloom-forming cyanobacterium Microcystis aeruginosa: revealed by multilocus sequence typing. Environ. Microbiol. Rep., 1, 575-582. Strain(s): 2469, 2470, 2471, 2472, 2473, 2474, 2475, 2476, 2477, 2478, 2479, 2480, 2481, 2482, 2483, 2484, 2485, 2486, 2487, 2488, 2489, 2490, 2491, 2492, 2493, 2494, 2495, 2496, 2546, 2547, 2548, 2549, 2550, 2551, 2552, 2553, 2554, 2555, 2556, 2557, 2558, 2559, 2560, 2561, 2592, 2593, 2594, 2617, 2618 PubMed: 23765937 DOI: 10.1111/j.1758-2229.2009.00088.x |
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