| Strain number | NIES-204 | |||
|---|---|---|---|---|
| Phylum | Cyanophyta | |||
| Class | Cyanophyceae | |||
| Scientific name | Planktothrix agardhii (Gomont) Anagnostidis & Komárek | |||
| Synonym | Oscillatoria agardhii Gomont 1892; Oscillatoria agardhii f. gomontii Elenkin 1949; Oscillatoria agardhii f. aequicrassa Elenkin 1949; Oscillatoria agardhii f. moebiusii Elenkin 1949; Oscillatoria agardhii f. lemmermannii Elenkin 1949; Oscillatoria agardhii f. wislouchii Elenkin 1949 | |||
| Former name | ||||
| Common name | Blue-green alga ; Cyanobacteria | |||
| Locality (Date of collection) | Lake Kasumigaura, Ibaraki, Japan (1983-08-24) | |||
| Latitude / Longitude | 36.081204 / 140.214193 | |||
| Habitat (Isolation source) | Freshwater (Lake water) | |||
| History | < Suda, Shoichiro | |||
| Isolator (Date of isolation) | Suda, Shoichiro (1983-08-30) | |||
| Identified by | Suda, Shoichiro | |||
| State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
|
Culture condition (Preculture condition) |
Medium:
CB
Temperature: 25 C Light intensity: 20-30 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
|||
| Gene information | Whole-genome ( AP017991-AP017995 ) , 16S rRNA ( AB045954 AB074507 ) , OAA ( AB453976 ) , rpoD1 ( AB074817 ) , gyrB ( AB074767 ) , rpoC1 ( AB074790 ) | |||
| Cell size (min - max) | 3 - 4 μm | |||
| Organization | Filamentous | |||
| Characteristics | Cyanobacterial water bloom (aoko) ; Type strain (Suda, S. et al. 2002) ; Genome decoded strain (Shimura et al. 2021) | |||
| Other strain no. |
Other collection strain no. : IAM M-244; CCAP 1460/5; PCC 10704
Other strain no. : K-O-A |
|||
| Remarks | Cryopreserved; Axenic | |||
| Movie | ||||
| Reference |
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Kim, M., Jung, J., Kim, W., Park, Y., Jeon, C. O., Park, W.
2024
Extensive genomic rearrangement of catalase-Less cyanobloom-forming Microcystis aeruginosa in freshwater ecosystems.
J. Microbiol.,
62,
933–950.
Keywords: Comparative genomics; Cyanobacterial bloom; Cyanobacterial metabolism; Genome plasticity; Microcystin; Oxidative stress Strain(s): 88, 102, 204, 298, 843, 2481, 2549 PubMed: 39377859 DOI: 10.1007/s12275-024-00172-7 Tuji, A., Ogiso-Tanaka, E., Yamaguchi, H. 2024 Complete genome sequence of Annamia dubia, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity. J. Genomics, 12, 1-5. Strain(s): 39, 46, 204, 843, 4383 PubMed: 38164507 DOI: 10.7150/jgen.87678 Entfellner, E., Baumann, K. B. L., Edwards, C., Kurmayer, R. 2023 High structural diversity of aeruginosins in bloom-Forming cyanobacteria of the genus Planktothrix as a consequence of multiple recombination events. Mar. Drugs, 21, 638 (article ID). Keywords: horizontal gene transfer; chemical diversification; freshwater ecotypes; shallow waterbodies; deep waterbodies Strain(s): 98, 102, 204, 298, 843, 2481, 2549 PubMed: 38132959 DOI: 10.3390/md21120638 Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH4+ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611. Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism Strain(s): 25, 50, 204, 267, 843, 970, 981, 2107, 2134, 2135, 2481, 2549, 3709, 3754, 3756, 3757, 4074 PubMed: 35595516 DOI: 10.1093/jxb/erac219 Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2021 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101, 101942 (article ID). Keywords: 5S ribosomal RNA gene; Aeruginosin; Horizontal gene transfer; Microcystis; Prenyltransferase; Oscillatorin Strain(s): 204 PubMed: 33526179 DOI: 10.1016/j.hal.2020.101942 Carbone, D. A., Pellone, P., Lubritto, C., Ciniglia, C. 2021 Evaluation of microalgae antiviral activity and their bioactive compounds. Antibiotics-Basel, 10, 746 (article ID). Keywords: microalgae; virus; antiviral compounds; SARS-CoV-2; microalgae antiviral activity; coronavirus disease Strain(s): 204 PubMed: 34202941 DOI: 10.3390/antibiotics10060746 Monteiro, P. R., do Amaral, S. C., Siqueira, A. S., Xavier, L. P., Santos, A. V. 2021 Anabaenopeptins: What We Know So Far. Toxins, 13, 522 (article ID). Keywords: cyanobacteria; peptide; NRPS; anabaenopeptin Strain(s): 81, 204, 595 PubMed: 34437393 DOI: 10.3390/toxins13080522 Rahman, M. M., Rahaman, M. S., Islam, M. R., Hossain, M. E., Mithi, FM., Ahmed, M., Saldías, M., Akkol, E. K., Sobarzo-Sánchez, E. 2021 Multifunctional therapeutic potential of phytocomplexes and natural extracts for antimicrobial properties. Antibiotics-Basel, 10, 1076 (article ID). Keywords: natural products; phytocomplexes; antimicrobial activity; alkaloids; tannins; terpenoids Strain(s): 204 PubMed: 34572660 DOI: 10.3390/antibiotics10091076 Chen, M., Tian, L.-L., Ren, C.-Y., Xu, C.-Y., Wang, Y.-Y., Li, L. 2019 Extracellular polysaccharide synthesis in a bloom-forming strain of Microcystis aeruginosa: implications for colonization and buoyancy. Sci Rep, 9, 1251 (article ID). Strain(s): 87, 88, 98, 204, 298, 843, 2481, 2549 PubMed: 30718739 DOI: 10.1038/s41598-018-37398-6 Selivanova, E. A., Poshvina, D. V., Khlopko, Yu. A., Gogoleva, N. E., Plotnikov, A. O. 2018 Diversity of prokaryotes in planktonic communities of saline sol-iletsk lakes (Orenburg Oblast, Russia). Microbiology, 87, 569-582. Keywords: saline lakes; biodiversity; prokaryotes; halophilic bacteria; archaea; planktonic communities; high-throughput sequencing; Illumina; 16S rRNA gene Strain(s): 204, 1267 DOI: 10.1134/S0026261718040161 Kaya, K., Sano, T. 2016 Chapter 18. Cyanobacterial retinoids. In Handbook of cyanobacterial monitoring and cyanotoxin analysis, Eds. byMeriluoto, J., Spoof, L., Codd, G. A., John Wiley & Sons, Ltd. pp. 173-178. Strain(s): 36, 44, 45, 46, 204, 512, 610, 1222 DOI: 10.1002/9781119068761.ch18 Oyama, Y., Matsushita, B., Fukushima, T., Chen, J., Nagai, T., Imai, A. 2010 Testing the spectral decomposition algorithm (SDA) for different phytoplankton species by a simulation based on tank experiments. Int. J. Remote Sens., 31, 1605-1623. Strain(s): 44, 75, 204, 803 DOI: 10.1080/01431160903475365 Sato, T. & Hori, K. 2009 Cloning, expression, and characterization of a novel anti-HIV lectin from the cultured cyanobacterium, Oscillatoria agardhii. Fish. Sci., 75, 743-753. Keywords: anti-HIV; high-mannose N-glycans; Oscillatoria agardhii; lectin; recombinant lectin Strain(s): 204 DOI: 10.1007/s12562-009-0074-4 Shinohara, A., Imai, A., Komatsu, K., Matsushige, K., Nara, F. 2008 Application of HPLC-PAD to highly sensitive analysis of dissolved carbohydrates and theit composition in lake water and extracellular organic matter derived from algae. J. Jpn. Soc. Wat. Environ., 31, 447-454 (in Japanese with English summary). Keywords: carbohydrates; DOM; HPLC-PAD; lake water; algal culture Strain(s): 44, 74, 204 DOI: 10.2965/jswe.31.447 Tomioka, N., Nagai, T., Kawasaki, T., Imai, A., Kohata, K. 2008 Quantification of Microcystis in a eutrophic lake by simple DNA extraction and SYBR green real-time PCR. Microbes Environ., 23, 306-312. Keywords: Microcystis; quantification; SYBR Green I; DNA extraction; eutrophic lake Strain(s): 98, 99, 204, 604, 611, 843, 946, 961 DOI: 10.1264/jsme2.ME08515 Sato, Y., Okuyama, S., Hori, K. 2007 Primary structure and carbohydrate binding specificity of a potent anti-HIV lectin isolated from the filamentous cyanobacterium Oscillatoria agardhii. J. Biol. Chem., 282, 11021-11029. Strain(s): 204 PubMed: 17314091 DOI: 10.1074/jbc.M701252200 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2007 Growth characteristics and growth modeling of Microcystis aeruginosa and Planktothrix agardhii under iron limitation. Limnology, 8, 261-270. Keywords: iron; growth rate; uptake rate; model simulation; cyanobacteria Strain(s): 44, 204 DOI: 10.1007/s10201-007-0217-1 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2006 Effect of iron complexation with dissolved organic matter on the growth of cyanobacteria in a eutrophic lake. Aquat. Microb. Ecol., 44, 231-239. Keywords: dissolved organic matter; DOM; cyanobacteria; iron; organic complexation Strain(s): 44, 204 DOI: 10.3354/ame044231 Jang, M.-H., Ha, K., Jung, J.-M., Lee, Y.-J., Takamura, N. 2006 Increased microcystin production of Microcystis aeruginosa by indirect exposure of nontoxic cyanobacteria: potential role in the development Microcystis bloom. Bull. Environ. Contam. Toxicol., 76, 957-962. Strain(s): 74, 88, 204 Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2005 Limiting nutrients on the growth of bloom-forming cyanobacteria with special focus on iron speciation. Verh. Internat. Verein. Limnol., 29, 949-952. Keywords: limiting nutrient; algal growth potential test; speciation; iron Strain(s): 44, 204 DOI: 10.1080/03680770.2005.11902823 Hosoya, R., Hamana, K., Isobe, M., Yokota, A. 2005 Polyamine distribution profiles within Cyanobacteria. Microbiol. Cult. Coll., 21, 3-8. Keywords: cyanobacteria; homospermidine; polyamine; spermidine Strain(s): 19, 21, 22, 28, 30, 34, 37, 41, 44, 45, 50, 73, 78, 79, 80, 81, 204, 208, 510, 512, 515, 592, 593, 610, 843, 846, 847, 2093, 2096, 2098, 2100, 2102, 2107, 2108, 2118, 2119, 2123, 2124, 2125, 2126, 2128, 2129, 2131, 2132, 3259, 3275, 3276, 3277 Sato, M., Murata, Y., Mizusawa, M., Iwahashi, H., Oka, S.-I. 2004 A simple and rapid dual-fluorescence viability assay for microalgae. Microbiol. Cult. Coll., 20, 53-59. Keywords: microalgae; SYTOX Green; viability assay; autofluorescence Strain(s): 32, 204 Hirabayashi, R. & Imamura, N. 2003 Action mechanism of a selective anti-cyanobacterial compound, argimicin A. J. Antibiotics, 56, 154-159. Strain(s): 41, 45, 81, 102, 204, 230, 298, 592 PubMed: 12715875 DOI: 10.7164/antibiotics.56.154 Yuki, Y., Yoshida, T., Hiroishi, S. 2002 Molecular detection of the toxic cyanobacteria [Yûdoku aoko no bunshi-shikibetsu to yosatsu he-no ôyô]. In Series of Fisheries Science Vol. 143, Prevention and Extermination Strategies of Harmful Algal Blooms [Suisan-gaku shirîzu 134, Yûgai-yûdoku sôrui burûmu no yobô to kujo] , Eds. by Hiroishi, S., Imai, I. & Ishimaru, T., Koseisha-Koseikaku, Tokyo, pp. 43-53 (in Japanese). Strain(s): 73, 81, 87, 88, 89, 90, 91, 98, 99, 100, 101, 102, 104, 105, 106, 108, 109, 110, 111, 112, 204, 230, 298, 299, 604 Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55. Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection Strain(s): 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 50, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 73, 74, 75, 76, 77, 78, 79, 80, 81, 87, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 119, 120, 122, 123, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 137, 138, 139, 144, 147, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 162, 163, 164, 165, 166, 167, 168, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 224, 226, 227, 228, 229, 230, 231, 232, 241, 242, 243, 244, 245, 246, 248, 257, 259, 261, 263, 266, 267, 268, 287, 288, 289, 290, 294, 295, 297, 298, 299, 300, 301, 302, 303, 305, 306, 308, 309, 310, 312, 313, 329, 334, 337, 338, 339, 340, 341, 342, 349, 351, 359, 360, 361, 362, 375, 378, 379, 380, 382, 384, 385, 390, 394, 396, 397, 398, 415, 416, 418, 419, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 436, 437, 438, 439, 440, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 464, 468, 469, 474, 478, 479, 480, 481, 503, 504, 505, 506, 507, 509, 510, 512, 514, 515, 522, 523, 524, 527, 528, 529, 530, 531, 532, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 592, 593, 594, 595, 596, 597, 598, 604, 610, 628, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 672, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729 Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595. Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy Strain(s): 204, 205, 207, 594, 595, 596, 610, 844, 845, 846, 847, 905, 911, 912, 913, 915, 916, 917, 918 PubMed: 12361260 DOI: 10.1099/00207713-52-5-1577 Choi, K., Imai, A., Kim, B., Matsushige, K. 2001 Properties of dissolved organic carbon (DOC) released by three species of blue-green algae. Korean J. Limnol., 34, 20-29. Keywords: extracellular organic carbon; fractionation; blue-green algae; growth phases Strain(s): 44, 74, 204 Sato, Y., Murakami, M., Miyazawa, K., Hori, K. 2000 Purification and characterization of a novel lectin from a freshwater cyanobacterium, Oscillatoria agardhii. Comp. Biochem. Physiol., Part B 125, 169-177. Keywords: agglutinins; blue-green algae; cyanobacteria; carbohydrate-binding specificity; isolation; lectin; eucheuma; Myxococcus xanthus; Oscillatoria agardhii; N-terminal sequence Strain(s): 204 PubMed: 10817903 DOI: 10.1016/S0305-0491(99)00164-9 Itou, Y., Ishida, K., Shin, H. J., Murakami, M. 1999 Oscillapeptins A to F, serine protease inhibitors from the three strains of Oscillatoria agardhii. Tetrahedron, 55, 6871-6882. Strain(s): 204, 205, 596 DOI: 10.1016/S0040-4020(99)00341-5 Neilan, B. A., Dittmann, E., Rouhiainen, L., Bass, R. A., Schaub, V., Sivonen, K., Börner, T. 1999 Nonribosomal peptide synthesis and toxigenicity of Cyanobacteria. J. Bacteriol., 181, 4089-4097. Strain(s): 19, 24, 81, 99, 102, 107, 204 PubMed: 10383979 DOI: 10.1128/JB.181.13.4089-4097.1999 Li, R., Yokota, A., Sugiyama, J., Watanabe, M., Hiroki, M., Watanabe, M. M. 1998 Chemotaxonomy of planktonic cyanobacteria based on non-polar and 3-hydroxy fatty acid composition. Phycol. Res., 46, 21-28. Keywords: 3-hydroxy fatty acids; chemotaxonomy; fatty acid; non-polar fatty acids; planktonic cyanobacteria Strain(s): 27, 40, 44, 76, 78, 79, 80, 81, 87, 89, 98, 102, 104, 111, 112, 204, 205, 207, 298, 604, 810, 821, 825, 826 DOI: 10.1111/j.1440-1835.1998.tb00093.x Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Anabaenopeptins E and F, two new cyclic peptides from the cyanobacterium Oscillatoria agardhii (NIES-204). J. Nat. Prod., 60, 139-141. Strain(s): 204 DOI: 10.1021/np960597p Murakami, M., Shin, H. J., Matsuda, H., Ishida, K., Yamaguchi, K. 1997 A cyclic peptide, anabaenopeptin B, from the cyanobacterium Oscillatoria agahdhii. Phytochemistry, 44, 449-452. Keywords: Oscillatoria agardhii; cyanobacterium; cyclic peptide; anabaenopeptin B Strain(s): 204 DOI: 10.1016/S0031-9422(96)00437-2 Shin, H. J., Murakami, M., Matsuda, H., Yamaguchi, K. 1996 Microviridins D-F, serine protease inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 8159-8168. Strain(s): 204 DOI: 10.1016/0040-4020(96)00377-8 Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Agardhipeptins A and B, two new cyclic hepta- and octapeptide, from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 13129-13136. Strain(s): 204 DOI: 10.1016/0040-4020(96)00775-2 Shin, H. J., Murakami, M., Matsuda, H., Ishida, K., Yamaguchi, K. 1995 Oscillapeptin, an elastase and chymotrypsin inhibitor from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron Letters, 36, 5235-5238. Strain(s): 204 DOI: 10.1016/0040-4039(95)00980-Q Neilan, B. A., Jacobs, D., Goodman, A. E. 1995 Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus. Appl. Environ. Microbiol., 61, 3875-3883. Strain(s): 24, 40, 41, 44, 73, 76, 78, 80, 81, 87, 89, 98, 102, 107, 111, 112, 204, 207, 298 PubMed: 8526499 Watanabe, Y., Ohmura, N., Saiki, H. 1992 Microbial CO2 fixation. 2. Isolation and determination of cultural characteristics of Chlorella strains which function under CO2 enriched atmosphere. CRIEPI Kenkyû-Hôkoku, U92014, 1-21 (in Japanese with English summary). Keywords: climate change; CO2; CO2 fixation; microalgae; Chlorella Strain(s): 27, 45, 92, 94, 122, 158, 204, 226, 227 Watanabe, M. M., Kasai, F., Hiwatari, T., Suda, S., Nei, T. 1984 Cryopreservation of microalgae in liquid nitrogen - Survival of algal cultures after freezing. Jpn. J. Freez. Dry., 30, 23-26 (in Japanese with English title). Strain(s): 18, 19, 21, 24, 26, 29, 31, 39, 40, 41, 44, 45, 46, 50, 73, 74, 75, 76, 77, 80, 81, 87, 88, 89, 90, 91, 93, 95, 98, 99, 100, 101, 120, 122, 131, 135, 137, 144, 151, 204, 207, 213, 257, 263, 379, 415, 2219, 2235, 2239, 2579 |
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