Strain Data

A big image opens when the thumbnail is clicked.(nies-1968.jpg)

Strain number		NIES-1968
Phylum		Metamonada
Class		Fornicata
Scientific name		Kipferlia bialata Yubuki, Simpson & Leander
Synonym		Cryptobia bialata Ruinen 1938; Carpediemonas bialata (Ruinen) Lee and Patterson 2000
Former name
Common name
Locality (Date of collection)		Sagami Bay, Shizuoka, Japan (2006-03-12)
Latitude / Longitude		35.0025 / 139.23083333
Habitat (Isolation source)		Marine (Seawater)
History		< TKB;
Isolator (Date of isolation)		Yubuki, Naoji (2006-03-**)
Identified by		Yubuki, Naoji
State of strain		Subculture; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: ESM + mTYGM-9 + Rice ; SUY 1/10 + mTYGM-9 + Rice Temperature: 15 C Duration: 1 M
Gene information		Whole-genome ( BDIP00000000 )
Cell size (min - max)
Organization
Characteristics		Heterotrophic ; Phagotrophic ; Benthic ; Genome decoded strain (Tanifuji et al. 2018)
Other strain no.		Other strain no. : TKB-336; NY0173
Remarks
Movie

Reference
Tanifuji, G., Takabayashi, S., Kume, K., Takagi, M., Nakayama, T., Kamikawa, R., Inagaki, Y., Hashimoto, T. 2018 The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487 (article ID). Strain(s): 1968 PubMed: 29590215 DOI: 10.1371/journal.pone.0194487 Yubuki, N., Simpson, A. G. B., Leander, B. 2013 Comprehensive ultrastructure of Kipferlia bialata provides evidence for character evolution within the Fornicata (Excavata). Protist, 164, 423-439. Keywords: Carpediemonas-like organisms; cell division; cytoskeleton; flagellar apparatus; microtubules; ultrastructure Strain(s): 1968 PubMed: 23517666 DOI: 10.1016/j.protis.2013.02.002 Takishita, K., Kolisko, M., Komatsuzaki, H., Yubuki, N., Inagaki, Y., Cepicka, I., Smejkalová, P., Silberman, J. D., Hashimoto, T., Roger, A. J., Simpson, A. G. B. 2012 Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of ‘amitochondriate’ diplomonads and retortamonads. Protist, 163, 344-355. Keywords: Carpediemonas-like organisms; diplomonads; Excavata; hydrogenosomes; mitochondria; mitosomes Strain(s): 1968 PubMed: 22364773 DOI: 10.1016/j.protis.2011.12.007 Kolisko, M., Silberman, J. D., Cepicka, I., Yubuki, N., Takishita, T., Yabuki, A., Leander, B. S., Inouye, I., Inagaki, Y., Roger, A., Simpson, A. G. B. 2010 A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environ. Microbiol., 12, 2700-2710. Strain(s): 1968 PubMed: 20482740 DOI: 10.1111/j.1462-2920.2010.02239.x Takishita, K., Yubuki, N., Kakizoe, N., Inagaki, Y., Maruyama, T. 2007 Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles, 11, 563–576. Keywords: Cultivation; Diversity; Methane seep; Microbial eukaryotes; SSU rDNA Strain(s): 1968 PubMed: 17426921 DOI: 10.1007/s00792-007-0068-z

Reference

Tanifuji, G., Takabayashi, S., Kume, K., Takagi, M., Nakayama, T., Kamikawa, R., Inagaki, Y., Hashimoto, T. 2018 The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487 (article ID).
Strain(s): 1968
PubMed: 29590215
DOI: 10.1371/journal.pone.0194487

Yubuki, N., Simpson, A. G. B., Leander, B. 2013 Comprehensive ultrastructure of Kipferlia bialata provides evidence for character evolution within the Fornicata (Excavata). Protist, 164, 423-439.
Keywords: Carpediemonas-like organisms; cell division; cytoskeleton; flagellar apparatus; microtubules; ultrastructure
Strain(s): 1968
PubMed: 23517666
DOI: 10.1016/j.protis.2013.02.002

Takishita, K., Kolisko, M., Komatsuzaki, H., Yubuki, N., Inagaki, Y., Cepicka, I., Smejkalová, P., Silberman, J. D., Hashimoto, T., Roger, A. J., Simpson, A. G. B. 2012 Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of ‘amitochondriate’ diplomonads and retortamonads. Protist, 163, 344-355.
Keywords: Carpediemonas-like organisms; diplomonads; Excavata; hydrogenosomes; mitochondria; mitosomes
Strain(s): 1968
PubMed: 22364773
DOI: 10.1016/j.protis.2011.12.007

Kolisko, M., Silberman, J. D., Cepicka, I., Yubuki, N., Takishita, T., Yabuki, A., Leander, B. S., Inouye, I., Inagaki, Y., Roger, A., Simpson, A. G. B. 2010 A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environ. Microbiol., 12, 2700-2710.
Strain(s): 1968
PubMed: 20482740
DOI: 10.1111/j.1462-2920.2010.02239.x

Takishita, K., Yubuki, N., Kakizoe, N., Inagaki, Y., Maruyama, T. 2007 Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles, 11, 563–576.
Keywords: Cultivation; Diversity; Methane seep; Microbial eukaryotes; SSU rDNA
Strain(s): 1968
PubMed: 17426921
DOI: 10.1007/s00792-007-0068-z

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