Strain Data

A big image opens when the thumbnail is clicked.(nies-1411.jpg)

Strain number		NIES-1411
Phylum		Chlorophyta
Class		Mamiellophyceae
Scientific name		Micromonas commoda Baren, Bachy & Worden
Synonym
Former name		Formerly identified as Micromonas pusilla, named based on Matsuzaki et al. 2014.[2024 Aug]
Common name
Locality (Date of collection)		Kasai Rinkai Park, Tokyo, Japan (2004-10-28)
Latitude / Longitude
Habitat (Isolation source)		Marine (Seawater)
History		< TKB;
Isolator (Date of isolation)		Nakayama, Takeshi (2004-07-**)
Identified by		Identified by DNA analysis at NIES
State of strain		Cryopreservation; Unialgal; Non-clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 20 C Light intensity: 32-34 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 1 M
Gene information		18S rRNA ( LC806245 )
Cell size (min - max)
Organization		Unicellular; Flagellate
Characteristics
Other strain no.		Other strain no. : TKB-189 (nak78)
Remarks		Cryopreserved
Movie

Reference
Matsuzaki, R., Noël, M.-H., Kawachi, M. 2024 Molecular identification of Micromonas (Mamiellales, Mamiellophyceae) strains from Japan maintained in the Microbial Culture Collection at the National Institute for Environmental Studies. Microb. Resour. Syst., 40, 47-51. Keywords: culture collection; marine microalga; picoplankton; prasinophyte; biodiversity Strain(s): 1411, 1412, 1413, 2527, 2528, 2529, 2530, 3660, 3661, 3662, 3663, 3664, 3665, 4096 Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M. 2019 Ecotoxicological bioassay using marine algae for deep-sea mining. In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham, pp. 255-271. Strain(s): 323, 613, 969, 971, 981, 1000, 1001, 1310, 1411, 2304, 2587, 2590, 2670, 2672 DOI: 10.1007/978-3-030-12696-4_10 Fukuda, S., Iwamoto, K., Atsumi, M., Yokoyama, A., Nakayama, T., Ishida, K-I., Inouye, I., Shiraiwa, Y. 2014 Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J. Plant Res., 127, 79-89. Keywords: Algal phytoremediation; Bioaccumulation; Radiopollution; Radionuclide elimination; Radioactive cesium; The Fukushima 1 Nuclear Power Plant accident Strain(s): 24, 36, 71, 155, 160, 203, 233, 246, 329, 333, 391, 405, 417, 440, 487, 503, 529, 531, 538, 548, 553, 587, 597, 678, 727, 805, 843, 859, 931, 995, 1003, 1012, 1015, 1017, 1031, 1044, 1045, 1259, 1326, 1331, 1377, 1382, 1388, 1411, 1435, 1439, 1440, 1441, 1442, 1458, 1728, 1826, 1831, 1833, 1840, 1846, 1862, 1865, 1956, 2131, 2144, 2146, 2147, 2150, 2175, 2176, 2185, 2268, 2325, 2341, 2352, 2377, 2412, 2437, 2854, 2855, 2856, 2858, 2859, 2860 PubMed: 24346654 DOI: 10.1007/s10265-013-0596-9 Hamana, K., Niitsu, M., Hayashi, H. 2013 Occurrence of homospermidine and thermospermine as a cellular polyamine in unicellular chlorophyte and multicellular charophyte green algae J. Gen. Appl. Micobiol., 59, 313-319. Keywords: green alga; homospermidine; polyamine; thermospermine Strain(s): 18, 151, 160, 255, 296, 306, 360, 363, 640, 722, 836, 1409, 1410, 1411, 1419, 1837, 2164, 2199, 3374 PubMed: 24005181 DOI: 10.2323/jgam.59.313 Matsumoto, T., Kawachi, M., Miyashita, H., Inagaki, Y. 2012 Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. J. Plant Res., 125, 705-711. Keywords: Plastid replacement; Tertiary endosymbiosis; Serial secondary endosymbiosis Strain(s): 1411 PubMed: 22441568 DOI: 10.1007/s10265-012-0486-6 Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D. 2011 Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiol. Ecol., 76, 513-523. Keywords: whole-genome amplification; photosynthetic; microbial eukaryote; flow cytometry sorting; rRNA genes Strain(s): 252, 1411 PubMed: 21348885 DOI: 10.1111/j.1574-6941.2011.01072.x

Reference

Matsuzaki, R., Noël, M.-H., Kawachi, M. 2024 Molecular identification of Micromonas (Mamiellales, Mamiellophyceae) strains from Japan maintained in the Microbial Culture Collection at the National Institute for Environmental Studies. Microb. Resour. Syst., 40, 47-51.
Keywords: culture collection; marine microalga; picoplankton; prasinophyte; biodiversity
Strain(s): 1411, 1412, 1413, 2527, 2528, 2529, 2530, 3660, 3661, 3662, 3663, 3664, 3665, 4096

Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M. 2019 Ecotoxicological bioassay using marine algae for deep-sea mining. In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham, pp. 255-271.
Strain(s): 323, 613, 969, 971, 981, 1000, 1001, 1310, 1411, 2304, 2587, 2590, 2670, 2672
DOI: 10.1007/978-3-030-12696-4_10

Fukuda, S., Iwamoto, K., Atsumi, M., Yokoyama, A., Nakayama, T., Ishida, K-I., Inouye, I., Shiraiwa, Y. 2014 Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J. Plant Res., 127, 79-89.
Keywords: Algal phytoremediation; Bioaccumulation; Radiopollution; Radionuclide elimination; Radioactive cesium; The Fukushima 1 Nuclear Power Plant accident
Strain(s): 24, 36, 71, 155, 160, 203, 233, 246, 329, 333, 391, 405, 417, 440, 487, 503, 529, 531, 538, 548, 553, 587, 597, 678, 727, 805, 843, 859, 931, 995, 1003, 1012, 1015, 1017, 1031, 1044, 1045, 1259, 1326, 1331, 1377, 1382, 1388, 1411, 1435, 1439, 1440, 1441, 1442, 1458, 1728, 1826, 1831, 1833, 1840, 1846, 1862, 1865, 1956, 2131, 2144, 2146, 2147, 2150, 2175, 2176, 2185, 2268, 2325, 2341, 2352, 2377, 2412, 2437, 2854, 2855, 2856, 2858, 2859, 2860
PubMed: 24346654
DOI: 10.1007/s10265-013-0596-9

Hamana, K., Niitsu, M., Hayashi, H. 2013 Occurrence of homospermidine and thermospermine as a cellular polyamine in unicellular chlorophyte and multicellular charophyte green algae J. Gen. Appl. Micobiol., 59, 313-319.
Keywords: green alga; homospermidine; polyamine; thermospermine
Strain(s): 18, 151, 160, 255, 296, 306, 360, 363, 640, 722, 836, 1409, 1410, 1411, 1419, 1837, 2164, 2199, 3374
PubMed: 24005181
DOI: 10.2323/jgam.59.313

Matsumoto, T., Kawachi, M., Miyashita, H., Inagaki, Y. 2012 Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. J. Plant Res., 125, 705-711.
Keywords: Plastid replacement; Tertiary endosymbiosis; Serial secondary endosymbiosis
Strain(s): 1411
PubMed: 22441568
DOI: 10.1007/s10265-012-0486-6

Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D. 2011 Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiol. Ecol., 76, 513-523.
Keywords: whole-genome amplification; photosynthetic; microbial eukaryote; flow cytometry sorting; rRNA genes
Strain(s): 252, 1411
PubMed: 21348885
DOI: 10.1111/j.1574-6941.2011.01072.x

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