Strain Data

A big image opens when the thumbnail is clicked.(nies-1333.jpg)

Strain number		NIES-1333
Phylum		Haptophyta
Class		Prymnesiophyceae
Scientific name		Chrysochromulina sp.
Synonym
Former name
Common name
Locality (Date of collection)		Tokyo Bay Japan (2003-10-16)
Latitude / Longitude
Habitat (Isolation source)		Marine (Seawater)
History		< TKB;
Isolator (Date of isolation)		Okamoto, Noriko (2003-12-**)
Identified by		Okamoto, Noriko
State of strain		Subculture; Unialgal; Non-clonal; Non-axenic
Culture condition (Preculture condition)		Medium: ESM Temperature: 20 C Light intensity: 4-5 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 1 M
Gene information		Mitochondria DNA ( AB930144 ) , 18S rRNA ( DQ980478 ) , 28S rRNA ( DQ980468 DQ980469 ) , actin ( DQ980417 DQ980418 DQ980438 ) , alpha-tubulin ( DQ980487 DQ980488 DQ980532 DQ980533 ) , beta-tubulin ( AB194979 DQ980520 DQ980513 DQ980514 DQ980519 ) , EFL ( AB377267 ) , Hsp90 ( ABJ80934 DQ980442 DQ980443 DQ980444 ) , rbcL ( AB510942 )
Cell size (min - max)		- 5 μm
Organization		Unicellular; Flagellate
Characteristics		Genome decoded strain (Nishimura et al. 2014) ; Prey for NIES-1334 and NIES-1335
Other strain no.		Other strain no. : TKB-079 (nrc063)
Remarks
Movie

Reference
Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910. Strain(s): 8, 254, 274, 286, 324, 331, 353, 381, 494, 623, 624, 997, 1012, 1013, 1015, 1320, 1330, 1333, 1334, 1335, 1372, 1377, 1388, 1390, 1396, 1397, 1408, 1438, 1439, 1441, 1868, 1964, 2008, 2142, 2144, 2149, 2300, 2305, 2325, 2411, 2433, 2498, 2502, 2566, 2584, 2586, 2589, 2590, 2677, 2878, 3374, 3604, 3775, 3876 PubMed: 30809012 DOI: 10.1038/s41396-019-0377-0 Nishimura, Y. 2016 Diversity and evolution of protist mitochondria : introns, gene content and genome architecture. PhD thesis, University of Tsukuba, Japan, 75 pp. Strain(s): 1333, 1335 Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014 An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID). Keywords: group II intron; mitochondrial genome; intron encoded protein; lateral intron transfer; Chrysochromulina sp. Strain(s): 1333 PubMed: 25054084 DOI: 10.4161/mge.29384 Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2012 Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina. PLoS One, 7, e37307 (article ID). Strain(s): 1333, 1335 PubMed: 22606358 DOI: 10.1371/journal.pone.0037307 Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228. Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy Strain(s): 1333, 1393 DOI: 10.1080/09670262.2011.594095 Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466. Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution Strain(s): 936, 955, 1333, 1335 PubMed: 16982820 DOI: 10.1093/molbev/msl120 Okamoto, N., Inouye, I. 2005 The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist, 156, 163-179. Keywords: beta-tubulin; Cryptophyta; Katablepharidophyta/Kathablepharida; Katablepharis/Kathablepharis japonica; Leucocrypta; Leucocryptos marina; phylogeny; SSU rDNA Strain(s): 1333, 1334, 1335 PubMed: 16171184 DOI: 10.1016/j.protis.2004.12.003

Reference

Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910.
Strain(s): 8, 254, 274, 286, 324, 331, 353, 381, 494, 623, 624, 997, 1012, 1013, 1015, 1320, 1330, 1333, 1334, 1335, 1372, 1377, 1388, 1390, 1396, 1397, 1408, 1438, 1439, 1441, 1868, 1964, 2008, 2142, 2144, 2149, 2300, 2305, 2325, 2411, 2433, 2498, 2502, 2566, 2584, 2586, 2589, 2590, 2677, 2878, 3374, 3604, 3775, 3876
PubMed: 30809012
DOI: 10.1038/s41396-019-0377-0

Nishimura, Y. 2016 Diversity and evolution of protist mitochondria : introns, gene content and genome architecture. PhD thesis, University of Tsukuba, Japan, 75 pp.
Strain(s): 1333, 1335

Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014 An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID).
Keywords: group II intron; mitochondrial genome; intron encoded protein; lateral intron transfer; Chrysochromulina sp.
Strain(s): 1333
PubMed: 25054084
DOI: 10.4161/mge.29384

Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2012 Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina. PLoS One, 7, e37307 (article ID).
Strain(s): 1333, 1335
PubMed: 22606358
DOI: 10.1371/journal.pone.0037307

Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228.
Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy
Strain(s): 1333, 1393
DOI: 10.1080/09670262.2011.594095

Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466.
Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution
Strain(s): 936, 955, 1333, 1335
PubMed: 16982820
DOI: 10.1093/molbev/msl120

Okamoto, N., Inouye, I. 2005 The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist, 156, 163-179.
Keywords: beta-tubulin; Cryptophyta; Katablepharidophyta/Kathablepharida; Katablepharis/Kathablepharis japonica; Leucocrypta; Leucocryptos marina; phylogeny; SSU rDNA
Strain(s): 1333, 1334, 1335
PubMed: 16171184
DOI: 10.1016/j.protis.2004.12.003

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