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Strain Data
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| Strain number | NIES-1333 | |||
|---|---|---|---|---|
| Phylum | Haptophyta | |||
| Class | Prymnesiophyceae | |||
| Scientific name | Chrysochromulina sp. | |||
| Synonym | ||||
| Former name | ||||
| Common name | ||||
| Locality (Date of collection) | Tokyo Bay Japan (2003-10-16) | |||
| Latitude / Longitude | ||||
| Habitat (Isolation source) | Marine (Seawater) | |||
| History | < TKB; | |||
| Isolator (Date of isolation) | Okamoto, Noriko (2003-12-**) | |||
| Identified by | Okamoto, Noriko | |||
| State of strain | Subculture; Unialgal; Non-clonal; Non-axenic | |||
|
Culture condition (Preculture condition) |
Medium:
ESM
Temperature: 20 C Light intensity: 4-5 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
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| Gene information | Mitochondria DNA ( AB930144 ) , 18S rRNA ( DQ980478 ) , 28S rRNA ( DQ980468 DQ980469 ) , actin ( DQ980417 DQ980418 DQ980438 ) , alpha-tubulin ( DQ980487 DQ980488 DQ980532 DQ980533 ) , beta-tubulin ( AB194979 DQ980520 DQ980513 DQ980514 DQ980519 ) , EFL ( AB377267 ) , Hsp90 ( ABJ80934 DQ980442 DQ980443 DQ980444 ) , rbcL ( AB510942 ) | |||
| Cell size (min - max) | - 5 μm | |||
| Organization | Unicellular; Flagellate | |||
| Characteristics | Genome decoded strain (Nishimura et al. 2014) ; Prey for NIES-1334 and NIES-1335 | |||
| Other strain no. | Other strain no. : TKB-079 (nrc063) | |||
| Remarks | ||||
| Movie | ||||
| Reference |
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Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y.
2014
An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333.
Mobile Genetic Elements,
4,
e29384 (article ID).
Keywords: group II intron; mitochondrial genome; intron encoded protein; lateral intron transfer; Chrysochromulina sp. Strain(s): 1333 PubMed: 25054084 DOI: 10.4161/mge.29384 Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2012 Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina. PLoS One, 7, e37307 (article ID). Strain(s): 1333, 1335 PubMed: 22606358 DOI: 10.1371/journal.pone.0037307 Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228. Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy Strain(s): 1333, 1393 DOI: 10.1080/09670262.2011.594095 Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466. Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution Strain(s): 936, 955, 1333, 1335 PubMed: 16982820 DOI: 10.1093/molbev/msl120 Okamoto, N., Inouye, I. 2005 The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist, 156, 163-179. Keywords: beta-tubulin; Cryptophyta; Katablepharidophyta/Kathablepharida; Katablepharis/Kathablepharis japonica; Leucocrypta; Leucocryptos marina; phylogeny; SSU rDNA Strain(s): 1333, 1334, 1335 PubMed: 16171184 DOI: 10.1016/j.protis.2004.12.003 |
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