Strain Data

A big image opens when the thumbnail is clicked.(nies-3808.jpg)

Strain number		NIES-3808
Phylum		Dinophyta
Class		Dinophyceae
Scientific name		Breviolum minutum T.C.LaJeunesse, J.E.Parkinson & J.D.Reimer
Synonym		Symbiodinium minutum LaJeunesse, J.E.Parkinson & J.D.Reimer; Zooxanthella minuta (LaJeunesse, J.E.Parkinson & J.D.Reimer) Guiry & R.A.Andersen 2018
Former name		Formerly identified as Symbiodinium minutum, named based on LaJeunesse et al. 2018[2019 Aug]
Common name		Dinoflagellate ; Zooxanthellae
Locality (Date of collection)		Tennessee Reef (Depth -22m), Florida Keys, Florida, USA (2002-10-20)
Latitude / Longitude		24.74001666 /
Habitat (Isolation source)		Marine (Coral)
History		< Shoguchi, Eiichi < Coffroth, M. A.
Isolator (Date of isolation)		Coffroth, M. A. (2002-10-22)
Identified by		Coffroth, M. A.
State of strain		Cryopreservation; Unialgal; Clonal; Non-axenic
Culture condition (Preculture condition)		Medium: f/2 Temperature: 20 C Light intensity: 3 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 30 D
Gene information		Whole-genome ( BASF00000000 ) , Plastid minicircle sequences ( JX094304-JX094335 ) , CO1 ( LC002801 ) , CO3 ( LC002802 ) , BAC paired-end sequences ( GA393224-GA453876 ) , Fosmid paired-end sequences ( GA453877-GA605429 )
Cell size (min - max)
Organization		Unicellular
Characteristics		Symbiotic (corals) ; Genome decoded strain (Shoguchi et al. 2013) ; Clade B
Other strain no.		Other strain no. : Mf1.05b.01
Remarks		Cryopreserved
Movie

Reference
Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID). Strain(s): 2907, 3808, 4076, 4077 PubMed: 38444256 DOI: 10.1111/1758-2229.13238 Zhou, W., Zhang, X., Wan, A., Yang, L., Gan, Q., Yi, L., Summons, R. E., Volkman, J. K., Lu, Y. 2022 Widespread sterol methyltransferase participates in the biosynthesis of both C4α- and C4β-methyl sterols. J. Am. Chem. Soc., 144, 9023-9032. Strain(s): 3808 PubMed: 35561259 DOI: 10.1021/jacs.2c01401 Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID). Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation Strain(s): 3808 PubMed: 31200330 DOI: 10.1016/j.aquatox.2019.05.017 Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244. Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding Strain(s): 3808 PubMed: 26199191 DOI: 10.1093/gbe/evv137 Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422. Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles Strain(s): 3808 PubMed: 24881086 DOI: 10.1093/gbe/evu109 Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408. Strain(s): 3808 PubMed: 23850284 DOI: 10.1016/j.cub.2013.05.062

Reference

Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID).
Strain(s): 2907, 3808, 4076, 4077
PubMed: 38444256
DOI: 10.1111/1758-2229.13238

Zhou, W., Zhang, X., Wan, A., Yang, L., Gan, Q., Yi, L., Summons, R. E., Volkman, J. K., Lu, Y. 2022 Widespread sterol methyltransferase participates in the biosynthesis of both C4α- and C4β-methyl sterols. J. Am. Chem. Soc., 144, 9023-9032.
Strain(s): 3808
PubMed: 35561259
DOI: 10.1021/jacs.2c01401

Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID).
Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation
Strain(s): 3808
PubMed: 31200330
DOI: 10.1016/j.aquatox.2019.05.017

Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding
Strain(s): 3808
PubMed: 26199191
DOI: 10.1093/gbe/evv137

Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422.
Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles
Strain(s): 3808
PubMed: 24881086
DOI: 10.1093/gbe/evu109

Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
Strain(s): 3808
PubMed: 23850284
DOI: 10.1016/j.cub.2013.05.062

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