Strain Data

Strain number		NIES-4106
Phylum		Cyanophyta
Class		Cyanophyceae
Scientific name		Pelatocladus sp.
Synonym
Former name		Formerly identified as Fischerella sp., named based on Casamatta et al. 2020[2020 Mar]
Common name		Blue-green alga ; Cyanobacteria
Locality (Date of collection)		Hagiu, Futtsu, Chiba, Japan (2007--)
Latitude / Longitude		35.197863 / 139.827151
Habitat (Isolation source)		Terrestrial (Soil)
History		< Katayama, Mitsunori
Isolator (Date of isolation)		Katayama, Mitsunori (2009--)
Identified by		Katayama, Mitsunori
State of strain		Cryopreservation; Unialgal; Clonal; Axenic[2017 May]
Culture condition (Preculture condition)		Medium: BG-11 (agar) Temperature: 20 C Light intensity: 7 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		Whole-genome ( AP018300 ) , Plasmid DNA ( AP018299-AP018306 )
Cell size (min - max)
Organization
Characteristics		Nitrogen fixation ; Attached ; Genome decoded strain
Other strain no.		Other strain no. : CIT040
Remarks		Cryopreserved; Axenic
Movie

Reference
Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID). Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106 PubMed: 38711016 DOI: 10.1186/s12862-024-02244-z Giannakopoulos, C., Panou, M., Gkelis, S. 2024 Phylogenetic analysis of Nostocales (Cyanobacteria) based on two novel molecular markers, implicated in the nitrogenase biosynthesis. FEMS Microbiol. Lett.,>, 371, fnad136 (article ID). Keywords: nitrogenase evolution; phylogeny; taxonomy; novel markers; nif genes; ecophysiological characters Strain(s): 21, 23, 25, 2098, 2111, 3756, 4074, 4103, 4106 PubMed: 38168702 DOI: 10.1093/femsle/fnad136 Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967. Strain(s): 25, 73, 267, 2100, 2107, 2109, 2111, 2130, 3755, 3756, 3757, 3974, 4073, 4102, 4103, 4105, 4106 PubMed: 37603862 DOI: 10.1021/acschembio.3c00112 Yruela, I., Moreno-Yruela, C., Olsen, C. A. 2021 Zn²⁺-dependent histone deacetylases in plants: Structure and evolution. Trends Plant Sci., 26, 741-757. Keywords: histone deacetylase; epigenetics; plant evolution; ductility; intrinsic disorder; zinc-binding Strain(s): 843, 4106 PubMed: 33461867 DOI: 10.1016/j.tplants.2020.12.011 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 Popin, R. V., Alvarenga, D. O., Castelo-Branco, R., Fewer, D. P., Sivonen, K. 2021 Mining of cyanobacterial genomes indicates natural product biosynthetic gene clusters located in conjugative plasmids. Front. Microbiol., 12, 684565 (article ID). Keywords: cyanobacteria; conjugation; genome mining; toxins; geosmin Strain(s): 25, 2111, 4106 DOI: 10.3389/fmicb.2021.684565 Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P., Johansen, J. R. 2020 Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique Nostocalean (Cyanobacteria) genus based on a polyphasic approach. J. Phycol., 56, 425-436. Keywords: cyanobacteria; Phylogeny; 16S rDNA; systematics Strain(s): 592, 3754, 4106 PubMed: 31837017 DOI: 10.1111/jpy.12954 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B. 2019 Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria. Extremophiles, 23, 635–647. Keywords: Fischerella: Mastigocladus: Distribution: Thermophile: Nitrogen fxation: Photosynthesis: Multicellularity: Hot springs Strain(s): 592, 3754, 4106 PubMed: 31512055 DOI: 10.1007/s00792-019-01125-4

Reference

Nowruzi, B., Hutarova, L., Vešelenyiova, D., Metcalf, J. S. 2024 Characterization of Neowestiellopsis persica A1387 (Hapalosiphonaceae) based on the cpcA, psbA, rpoC1, nifH and nifD gene sequences. BMC Ecol. Evol., 24, 57 (article ID).
Keywords: Cyanobacteria; Phylogenetic analysis; Neowestiellopsis persica, cpcA
Strain(s): 21, 22, 23, 25, 50, 73, 267, 592, 2098, 2100, 2107, 3275, 3754, 3756, 3974, 4073, 4074, 4101, 4103, 4106
PubMed: 38711016
DOI: 10.1186/s12862-024-02244-z

Giannakopoulos, C., Panou, M., Gkelis, S. 2024 Phylogenetic analysis of Nostocales (Cyanobacteria) based on two novel molecular markers, implicated in the nitrogenase biosynthesis. FEMS Microbiol. Lett.,>, 371, fnad136 (article ID).
Keywords: nitrogenase evolution; phylogeny; taxonomy; novel markers; nif genes; ecophysiological characters
Strain(s): 21, 23, 25, 2098, 2111, 3756, 4074, 4103, 4106
PubMed: 38168702
DOI: 10.1093/femsle/fnad136

Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967.
Strain(s): 25, 73, 267, 2100, 2107, 2109, 2111, 2130, 3755, 3756, 3757, 3974, 4073, 4102, 4103, 4105, 4106
PubMed: 37603862
DOI: 10.1021/acschembio.3c00112

Yruela, I., Moreno-Yruela, C., Olsen, C. A. 2021 Zn²⁺-dependent histone deacetylases in plants: Structure and evolution. Trends Plant Sci., 26, 741-757.
Keywords: histone deacetylase; epigenetics; plant evolution; ductility; intrinsic disorder; zinc-binding
Strain(s): 843, 4106
PubMed: 33461867
DOI: 10.1016/j.tplants.2020.12.011

Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID).
Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy
Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4070, 4073, 4074, 4075, 4101, 4102, 4103, 4106
PubMed: 34677568
DOI: 10.1093/dnares/dsab024

Popin, R. V., Alvarenga, D. O., Castelo-Branco, R., Fewer, D. P., Sivonen, K. 2021 Mining of cyanobacterial genomes indicates natural product biosynthetic gene clusters located in conjugative plasmids. Front. Microbiol., 12, 684565 (article ID).
Keywords: cyanobacteria; conjugation; genome mining; toxins; geosmin
Strain(s): 25, 2111, 4106
DOI: 10.3389/fmicb.2021.684565

Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P., Johansen, J. R. 2020 Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique Nostocalean (Cyanobacteria) genus based on a polyphasic approach. J. Phycol., 56, 425-436.
Keywords: cyanobacteria; Phylogeny; 16S rDNA; systematics
Strain(s): 592, 3754, 4106
PubMed: 31837017
DOI: 10.1111/jpy.12954

MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451.
Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106
PubMed: 31899489
DOI: 10.1093/molbev/msz308

Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B. 2019 Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria. Extremophiles, 23, 635–647.
Keywords: Fischerella: Mastigocladus: Distribution: Thermophile: Nitrogen fxation: Photosynthesis: Multicellularity: Hot springs
Strain(s): 592, 3754, 4106
PubMed: 31512055
DOI: 10.1007/s00792-019-01125-4

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