Strain Data

A big image opens when the thumbnail is clicked.(nies-4076.jpg)

Strain number		NIES-4076
Phylum		Dinophyta
Class		Dinophyceae
Scientific name		Symbiodinium sp.
Synonym
Former name
Common name		Dinoflagellate ; Zooxanthellae
Locality (Date of collection)		Okinawa, Japan
Latitude / Longitude
Habitat (Isolation source)		Marine (Cardiid clam (Tridacna crocea))
History		< Shoguchi, Eiichi < Hidaka, Michio < Yamasu, Terufumi
Isolator (Date of isolation)		Yamasu, Terufumi
Identified by		Hidaka, Michio
State of strain		Subculture; Clonal; Axenic[2024 Dec]
Culture condition (Preculture condition)		Medium: f/2 Temperature: 20 C Light intensity: 6 µmol photons/m²/sec, L/D cycle: 10L:14D Duration: 2 M
Gene information		Whole-genome ( BGNK00000000 )
Cell size (min - max)
Organization		Unicellular
Characteristics		Symbiotic （clam） ; Genome decoded strain (Shoguchi et al. 2018) ; Clade A
Other strain no.		Other strain no. : Y106
Remarks		Axenic
Movie

Reference
Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID). Strain(s): 2907, 3808, 4076, 4077 PubMed: 38444256 DOI: 10.1111/1758-2229.13238 Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID). Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression Strain(s): 4076, 4077 PubMed: 33182359 DOI: 10.3390/microorganisms8111759 Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID). Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis Strain(s): 4076, 4077 PubMed: 29898658 DOI: 10.1186/s12864-018-4857-9

Reference

Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID).
Strain(s): 2907, 3808, 4076, 4077
PubMed: 38444256
DOI: 10.1111/1758-2229.13238

Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID).
Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression
Strain(s): 4076, 4077
PubMed: 33182359
DOI: 10.3390/microorganisms8111759

Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).
Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis
Strain(s): 4076, 4077
PubMed: 29898658
DOI: 10.1186/s12864-018-4857-9

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