Strain number | NIES-3377 | |||
---|---|---|---|---|
Phylum | Rhodophyta | |||
Class | Cyanidiophyceae | |||
Scientific name | Cyanidioschyzon merolae De Luca, Taddei & Varano | |||
Synonym | ||||
Former name | ||||
Common name | Red alga | |||
Locality (Date of collection) | Sardinia Isl., Italy (locality of wild type strain (NIES-1332)) | |||
Latitude / Longitude | ||||
Habitat (Isolation source) | Hot spring (Water) | |||
History | < Toda, Kyoko | |||
Isolator (Date of isolation) | Toda, Kyoko | |||
Identified by | ||||
State of strain | Cryopreservation; Unialgal; Clonal; Axenic | |||
Culture condition (Preculture condition) |
Medium:
M-Allen
Temperature: 37 C Light intensity: 10-11 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 6 M |
|||
Gene information | Mitochondria DNA ( D89861 ) , Nuclear DNA (chromosome 1-20) ( AP006483-AP006502 ) , Plastid DNA ( AB002583 ) , chromosome ubassaugned contigs ( AP006600-AP006614 ) , aladh ( AB159599 ) , atpC ( AB159600 ) , gnd ( AB159595 AB159596 ) , Hsp70 ( AB095185 ) , Hsp90 ( AB095179 AB095186 ) , pgk ( AB159598 ) , psbO ( AB159597 ) , RPB1 ( AB095180 AB095187 ) , RpS8b ( AB095181 AB095188 ) , TPI ( AB095182 AB095189 ) , VatA ( AB095183 AB095190 ) , VatB ( AB095184 AB095191 ) | |||
Cell size (min - max) | 2 - 4 μm | |||
Organization | Unicellular | |||
Characteristics | Planktonic ; Thermophilic (opt. 40-45℃() ; Acidophilic (pH 1.5-2.4) ; Phototaxic ; Genome decoded strain | |||
Other strain no. | Other strain no. : 10D | |||
Remarks | Not available; Cryopreserved; Purified strain from NIES-1332; Fragile species to temperature changes; Axenic | |||
Movie |
Reference |
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Mogi, Y., Matsuo, Y., Kondo, Y., Higashiyama, T., Inada, T., Yoshida, Y.
2025
Genome-wide changes of protein translation levels for cell and organelle proliferation in a simple unicellular alga.
Proc. Jpn. Acad. Ser. B-Phys. Biol. Sci.,
101,
41-53.
Keywords: cell and organelle division; ribosome profiling; mitochondrial nucleoid protein; mitochondrial division protein; Cyanidioschyzon merolae; eukaryote evolvability Strain(s): 3377 PubMed: 39805589 DOI: 10.2183/pjab.101.002 Fujiwara, T., Hirooka, S., Yamashita, S., Yagisawa, F., Miyagishima, S. 2024 Development of a rapamycin-inducible protein-knockdown system in the unicellular red alga Cyanidioschyzon merolae. Plant Physiol., 196, 77–94. Strain(s): 3377 PubMed: 38833589 DOI: 10.1093/plphys/kiae316 Marchetto, F., Santaeufemia, S., Lebiedzińska-Arciszewska, M., Śliwińska, M. A., Pich, M., Kurek, E., Nazieblo, A., Strawski, M., Solymosi, D., Szklarczyk, M., Bulska, E., Szymański, J., Wierzbicka, M., Allahverdiyeva, Y., Wieckowski, M. R., Kargul, J. 2024 Dynamic adaptation of the extremophilic red microalga Cyanidioschyzon merolae to high nickel stress. Plant Physiol. Biochem., 207, 108365 (article ID). Keywords: Abiotic stress; Adaptation; Cyanidioschyzon merolae; Heavy metals; Nickel; Photosynthesis and respiration Strain(s): 2237, 3377 PubMed: 38266563 DOI: 10.1016/j.plaphy.2024.108365 Seger, M., Mammadova, F., Villegas-Valencia, M., de Freitas, B. B., Chang, C. R. S., Isachsen, I., Hemstreet, H., Abualsaud, F., Boring, M., Lammers, P. J., Lauersen, K. J. 2023 Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga Cyanidioschyzon merolae 10D. Metab. Eng. Commun., 17, e00226 (article ID). Keywords: Microalgae; red algae; ketocarotenoids; Cyanidiophyceae; polyextremophiles; astaxanthin Strain(s): 3377 PubMed: 37449053 DOI: 10.1016/j.mec.2023.e00226 Hamana, K., Furuchi, T., Hayashi, H., Uemura, T., Niitsu, M. 2023 Additional polyamine analysis of the algae belonging to the phyla Glaucophyta, Rhodophyta and Chlorophyta. ─Polyamine analysis of algae V─ Microb. Resour. Syst., 39, 33-40. Keywords: alga; Chlorophyta; Glaucophyta; polyamine; Rhodophyta Strain(s): 226, 250, 254, 550, 551, 626, 1298, 1332, 1703, 1836, 2137, 2163, 2164, 2165, 2166, 2252, 2353, 2894, 3377, 3645, 3867, 3891, 3892, 4107, 4390, 4452 Chiang, Y.-H., Huang, Y.-J., Fu, H.-Y. 2022 Identifcation of multiple nonphotochemical quenching processes in the extremophilic red alga Cyanidioschyzon merolae. Photosynth. Res., 154, 125–141. Keywords: Energy spillover; Energetic decoupling; Functional antenna size Strain(s): 3377 PubMed: 36155877 DOI: 10.1007/s11120-022-00963-2 Tanaka, N., Mogi, Y., Fujiwara, T., Yabe, K., Toyama, Y., Higashiyama, T., Yoshida, Y. 2021 CZON-cutter - a CRISPR-Cas9 system for multiplexed organelle imaging in a simple unicellular alga. J. Cell Sci., 134, jcs258948 (article ID). Keywords: CRISPR-Cas9 gene editing; Multiplexed organelle imaging; Rhodophyta; Cyanidioschyzon merolae; Organelle division; Cell cycle Strain(s): 3377 PubMed: 34633046 DOI: 10.1242/jcs.258948 Miyagishimi, S., Tanaka, K. 2021 The unicellular red alga Cyanidioschyzon merolae—The simplest model of a photosynthetic eukaryote. Plant Cell Physiol., 62, 926–941. Keywords: Cyanidiales; Cyanidioschyzon merolae; Photosynthetic eukaryotes; Red algae Strain(s): 3377 PubMed: 33836072 DOI: 10.1093/pcp/pcab052 Yoshida, C., Murakami, M., Niwa, A., Takeya, M., Osanai, T. 2021 Efficient extraction and preservation of thermotolerant phycocyanins from red alga Cyanidioschyzon merolae. J. Biosci. Bioeng., 131, 161-167. Keywords: Cyanidioschyzon merolae; Microalgae; Phycocyanin; Protein extraction; Red algae Strain(s): 3377 PubMed: 33109478 DOI: 10.1016/j.jbiosc.2020.09.021 Jong, L. W., Fujiwara, T., Hirooka, S., Miyagishima, S. 2021 Cell size for commitment to cell division and number of successive cell divisions in cyanidialean red algae. Protoplasma, 258, 1103–1118. Keywords: Cell cycle; Cyanidiales; Cyanidioschyzon; Cyanidium; Galdieria; Multiple fission Strain(s): 2137, 3377 PubMed: 33675395 DOI: 10.1007/s00709-021-01628-y Hirooka, S., Tomita, R., Fujiwara, T., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., Miyagishima, S. 2020 Efficient open cultivation of cyanidialean red algae in acidified seawater. Sci Rep, 10, 13794 (article ID). Strain(s): 2137, 3377 PubMed: 32839467 DOI: 10.1038/s41598-020-70398-z Cho, Y.-L., Lee, Y.-C., Hsu, L.-C., Wang, C.-C., Chen, P.-C., Liu, S.-L., Teah, H.-Y., Liu, Y.-T., Tzou, Y.-M. 2020 Molecular mechanisms for Pb removal by Cyanidiales: a potential biomaterial applied in thermo-acidic conditions. Chem. Eng. J., 401, 125828 (article ID). Keywords: Cyanidiales; Thermoacidophilic; Lead; Speciation; XAS; Protein secondary structure Strain(s): 551, 3377 DOI: 10.1016/j.cej.2020.125828 Liu, S.-L., Chiang, Y.-R., Yoon, H. S., Fu, H.-Y. 2020 Comparative genome analysis reveals Cyanidiococcus gen. nov., a new extremophilic red algal genus sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta). J. Phycol., 56, 1428-1442. Strain(s): 3377, 4390 DOI: 10.1111/jpy.13056 Zienkiewicz, M., Krupnik, T., Drożak, A., Kania, K. 2019 PEG-mediated, stable, nuclear and chloroplast transformation of Cyanidioschizon merolae. Bio-protocol, 9, e3355 (article ID). Strain(s): 1332, 3377 DOI: 10.21769/BioProtoc.3355 Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S. 2019 Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae. Plant Direct, 3, e00134 (article ID). Keywords: Cyanidioschyzon merolae; Galdieria sulphuraria; heterotroph; mixotroph; plasma membrane sugar transporter Strain(s): 3377 PubMed: 31245772 DOI: 10.1002/pld3.134 Imamura, S., Nomura, Y., Takemura, T., Pancha, I., Taki, K., Toguchi, K., Tozawa, Y., Tanaka K. 2018 The checkpoint kinase TOR (target of rapamycin) regulates expression of a nuclear‐encoded chloroplast RelA‐SpoT homolog (RSH) and modulates chloroplast ribosomal RNA synthesis in a unicellular red alga. Plant J., 94, 327-339. Keywords: RelA-SpoT homolog; ppGpp; red alga; ribosomal RNA; target of rapamycin Strain(s): 3377 PubMed: 29441718 DOI: 10.1111/tpj.13859 Miyagishima, S., Wei, J. L., Nozaki, H., Hirooka, S. 2018 Cyadidiales: Evolution and habitats. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 3-15. Strain(s): 3377 DOI: 10.1007/978-981-10-6101-1_1 Yoshida, Y., Imoto, Y., Yagisawa, F. 2018 Isolation of dividing organelles from Cyanidioschyzon merolae cells. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 43-57. Strain(s): 3377 DOI: 10.1007/978-981-10-6101-1_4 Nozaki, H., Kanesaki, Y., Matsuzaki, M., Hirooka, S. 2018 The 100%-complete nuclear and organellar genome sequences of the ultrasmall red algal species Cyanidioschyzon merolae 10D. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 61-72. Strain(s): 3377 DOI: 10.1007/978-981-10-6101-1_5 Miyagishima, S. & Wei, J. L. 2018 Procedures for cultivation, observation, and conventional experiments in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 31-41. Keywords: Cell cycle; Cell division; Cyanidiales; Cyanidioschyzon merolae; Red algae; Synchronous culture Strain(s): 3377 DOI: 10.1007/978-981-10-6101-1_3 Fjiwara, T. & Ohnuma, M. 2018 Procedures for transformation and their applications in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 87-103. Keywords: Transformation; Homologous recombination; Gene targeting; biotechnology; Algae; Genetic engineering Strain(s): 3377 DOI: 10.1007/978-981-10-6101-1_7 Zienkiewicz, M., Krupnik, T., Drożak, A., Wasilewska, W., Golke, A., Romanowska, E. 2018 Deletion of psbQ’ gene in Cyanidioschyzon merolae reveals the function of extrinsic PsbQ’ in PSII. Plant Mol. Biol., 96, 135–149. Keywords: Stable red algae nuclear transformation; DTA toxin; Cyanidioschyzon merolae; Chloramphenicol; acetyltransferase; PEG; PsbQ’; PSII mutants; PSII extrinsic protein deletion Strain(s): 3377 PubMed: 29196904 DOI: 10.1007/s11103-017-0685-6 Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y. 2017 Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 8, e343 (article ID). Keywords: algae, plants; photosynthetic eukaryotes; genetic modification; multiple transformation; chloramphenicol; CAT selection marker Strain(s): 3377 PubMed: 28352279 DOI: 10.3389/fpls.2017.00343 Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Chloramphenicol acetyltransferase a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae. Protoplasma, 254, 587-596. Keywords: Cyanidioschyzon merolae; Chloramphenicol acetyltransferase (CAT) stable genome transformation Strain(s): 3377 PubMed: 26715590 DOI: 10.1007/s00709-015-0936-9 Rademacher, N., Wrobel, T. J., Rossoni, A. W., Kurz, S., Bräutigam, A., Weber, A. P. M., Eisenhut, M. 2017 Transcriptional response of the extremophile red alga Cyanidioschyzon merolaee to changes in CO2 concentrations. J. Plant Physiol., 217, 49-56. Keywords: Cyanidioschyzon merolae; RNA-seq; CO2 limitation; Photorespiration Strain(s): 3377 PubMed: 28705662 DOI: 10.1016/j.jplph.2017.06.014 Kawase, Y.2, Imamura, S., Tanaka, K. 2017 A MYB-type transcription factor, MYB2, represses light-harvesting protein genes in Cyanidioschyzon merolae. FEBS Lett., 591, 2439-2448. Keywords: dark acclimation; MYB-type transcription factor; phycobilisome Strain(s): 3377 PubMed: 28748638 DOI: 10.1002/1873-3468.12763 Kuroiwa, T., Ohnuma, M., Imoto, Y., Misumi, O., Nagata, N., Miyakawa, I., Fujishima, M., Yagisawa, F., Kuroiwa, H. 2016 Genome size of the ultrasmall unicellular freshwater green alga, Medakamo hakoo 311, as determined by staining with 4′,6-diamidino-2-phenylindole after microwave oven treatments: II. Comparison with Cyanidioschyzon merolae, Saccharomyces cerevisiae (n, 2n), and Chlorella variabilis. Cytologia, 81, 69-76. Keywords: Ultrasmall genome size; Medakamo hakoo; Saccharyomyces cerevisiae; Chlorella variabilis; DAPI staining; Microwave oven Strain(s): 3377, 4000 DOI: 10.1508/cytologia.81.69 Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID). Keywords: chloroplast division; algal cell cycle; Cyanidioschyzon merolae; Cyanophora paradoxa Strain(s): 547, 3377 PubMed: 27837024 DOI: 10.1073/pnas.1612872113 Fujiwara, T., Kanesaki, Y., Hirooka, S., Era, A., Sumiya, N., Yoshikawa, H., Tanaka, K., Miyagishima, S. 2015 A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 6, 657 (article ID). Keywords: algae; plants; homologous recombination; conditional knockdown; gene inducible system Strain(s): 3377 PubMed: 26379685 DOI: 10.3389/fpls.2015.00657 Kuroiwa, T., Ohnuma, M., Nozaki, H., Imoto, Y., Misumi, O., Kuroiwa, H. 2015 Cytological evidence of cell-nuclear genome size of a new ultra-small unicellular freshwater green alga, “Medakamo hakoo” strain M-hakoo 311 I. Comparison with Cyanidioschyzon merolae and Ostreococcus tauri. Cytologia, 80, 143-150. Keywords: Ultra-small alga; Chlorophyte M. hakoo; Cyanidioschyzon merolae; Ostreococcus tauri; Genome size; Cytochemistry Strain(s): 2673, 3377, 4000 DOI: 10.1508/cytologia.80.143 Miyashita, S., Groombridge, A. S., Fujii, S., Minoda, A., Takatsu, A., Hioki, A., Chiba, K., Inagaki, K. 2014 Highly efficient single-cell analysis of microbial cells by time-resolved inductively coupled plasma mass spectrometry. J. Anal. At. Spectrom., 29, 1598-1606. Strain(s): 3377 DOI: 10.1039/C4JA00040D Imoto, Y., Kuroiwa, H., Yoshida, Y., Ohnuma, M., Fujiwara, T., Yoshida, M., Nishida, K., Yagisawa, F., Hirooka, S., Miyagishima, S.Y., Misumi, O., Kawano, S., Kuroiwa, T. 2013 Single-membrane-bound peroxisome division revealed by isolation of dynamin-based machinery. Proc. Nati. Acad. Sci. U. S. A., 110, 9583-9588. Strain(s): 3377 PubMed: 23696667 DOI: 10.1073/pnas.1303483110 Yoshida, Y., Fujiwara, T., Imoto, Y., Yoshida, M., Ohnuma, M., Hirooka, S., Misumi, O., Kuroiwa, H., Kato, S., Matsunaga, S., Kuroiwa, T. 2013 The kinesin-like protein TOP promotes Aurora localisation and induces mitochondrial, chloroplast and nuclear division. J. Cell Sci., 126, 2392-2400. Keywords: Cell-division cycle, Cyanidioschyzon merolae; Kinesin; Mitochondrial division; Plastid division Strain(s): 3377 PubMed: 23549784 DOI: 10.1242/jcs.116798 Kanesaki, Y., Imamura, S., Minoda, A., Tanaka, K. 2012 External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae. DNA Res., 19, 289-303. Keywords: cell cycle; clustering analysis; Cyanidioschyzon; organelle; transcriptome Strain(s): 3377 PubMed: 22518007 DOI: 10.1093/dnares/dss013 Yoshida, Y., Miyagishima, S.-Y., Kuroiwa H., Kuroiwa, T. 2012 The plastid-dividing machinery: formation, constriction and fission. Curr. Opin. Plant Biol., 15, 714-721. Strain(s): 3377 PubMed: 22824141 DOI: 10.1016/j.pbi.2012.07.002 Miyagishima, S., Suzuki, K., Okazaki, K., Kabeya, Y. 2012 Expression of the nucleus-encoded chloroplast division genes and proteins regulated by the algal cell cycle. Mol. Biol. Evol., 29, 2957-2970. Keywords: cell cycle; chloroplast division; endosymbiosis; endosymbiotic gene transfer Strain(s): 296, 484, 547, 1332, 2170, 3377 PubMed: 22490821 DOI: 10.1093/molbev/mss102 Ohnuma, M., Kuroiwa, T., Tanaka, K. 2011 Optimization of cryopreservation conditions for the unicellular red alga Cyanidioschyzon merolae. J. Gen. Appl. Micobiol.,, 57, 137-143. Keywords: cryoinjury; cryopreservation; Cyanidioschyzon merolae; unicellular red alga Strain(s): 1332, 3377 PubMed: 21817825 DOI: 10.2323/jgam.57.137 Takaichi, S. 2011 Carotenoids in algae: distributions, biosyntheses and functions. Mar. Drugs, 9, 1101-1118. Keywords: algal phylogeny; biosynthesis of carotenoids; distribution of carotenoids; function of carotenoids; pigment-protein complex Strain(s): 144, 1332, 3377 PubMed: 21747749 DOI: 10.3390/md9061101 Fujiwara, T., Kuroiwa, H., Yagisawa, F., Ohnuma, M., Yoshida, Y., Yoshida, M., Nishida, K., Misumi, O., Watanabe, S., Tanaka, K., Kuroiwa, T. 2010 The coiled-coil protein VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance of Cyanidioschyzon merolae. Plant Cell, 22, 772-781. Strain(s): 3377 PubMed: 20348431 DOI: 10.1105/tpc.109.070227 Minoda, A., Weber, A. P. M., Tanaka, K., Miyagishima, S. 2010 Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol., 154, 1532-1540. Strain(s): 3377 PubMed: 20813908 DOI: 10.1104/pp.110.163188 Busch, A., Nield, J., Hippler, M. 2010 The composition and structure of photosystem I-associatied antenna from Cyanidioschyzon merolae. Plant J., 62, 886-897. Keywords: Cyanidioschyzon merolae; Lhcr; photosystem I; phycobilisomes; proteomics Strain(s): 3377 PubMed: 20230507 DOI: 10.1111/j.1365-313X.2010.04202.x Yoshida, Y., Kuroiwa, H., Misumi, O., Yoshida, M., Ohnuma, M., Fujiwara, T., Yagisawa, F., Hirooka, S., Imoto, Y., Matsushita, K., Kawano, S., Kuroiwa, T. 2010 Chloroplasts divide by contraction of a bundle of nanofilaments consisting of polyglucan. Science, 329, 949-953. Strain(s): 3377 PubMed: 20724635 DOI: 10.1126/science.1190791 Imamura, S., Terashita, M., Ohnuma, M., Maruyama, S., Minoda, A., Weber, A. P. M., Inouye, T., Sekine, Y., Fujita, Y., Omata, T., Tanaka, K. 2010 Nitrate assimilatory genes and their transcriptional regulation in a unicellular red alga Cyanidioschyzon merolae: genetic evidence for nitrite reduction by a sulfite reductase-like enzyme. Plant Cell Physiol., 51, 707-717. Keywords: Cyanidioschyzon merolae; Nitrate assimilation; Nitrite reductase; Nitrogen regulation; Red alga; Sulfite reductase Strain(s): 3377 PubMed: 20375110 DOI: 10.1093/pcp/pcq043 Fujiwara, T., Misumi, O., Tashiro, K., Yoshida, Y., Nishida, K., Yagisawa, F., Imamura, S., Yoshida, M., Mori, T., Tanaka, K., Kuroiwa, T. 2009 Peirodic gene expression patterns duiring the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae. DNA Res., 16, 59-72. Keywords: cell cycle; microarray; mitochondria-plastid division genes; organelle division genes; Cyanidioschyzon merolae Strain(s): 3377 PubMed: 19147531 DOI: 10.1093/dnares/dsn032 Ohnuma, M., Misumi, O., Fujiwara, T., Watanabe, S., Tanaka, K., Kuroiwa, T. 2009 Transient gene suppression in a red alga, Cyanidioschyzon merolae 10D. Protoplasma, 236, 107-112. Keywords: Antisense suppression; Cyanidioschyzon merolae; Catalase; GFP; Transformation Strain(s): 3377 PubMed: 19533298 DOI: 10.1007/s00709-009-0056-5 Yoshida, Y., Kuroiwa, H., Hirooka, S., Fujiwara, T., Ohnuma, M., Yoshida, M., Misumi, O., Kawano, S., Kuroiwa, T. 2009 The bacterial ZapA-like protein ZED is required for mitochondrial division. Curr. Biol., 19, 1491-1497. Strain(s): 3377 PubMed: 19699094 DOI: 10.1016/j.cub.2009.07.035 Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T. 2009 Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae. Plant J., 60, 882-893. Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS) Strain(s): 3377 PubMed: 19709388 DOI: 10.1111/j.1365-313X.2009.04008.x Imamura, S., Kanesaki, Y., Ohnuma, M., Inouye, T., Sekine, Y., Fujiwara, T., Kuroiwa, T., Tanaka, K. 2009 R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 106, 12548-12553. Strain(s): 3377 PubMed: 19592510 DOI: 10.1073/pnas.0902790106 Kobayashi, Y., Kanesaki, Y., Tanaka, A., Kuroiwa, H., Kuroiwa, T., Tanaka, K. 2009 Tetrapyrrole signal as a cell-cycle coordinator from organelle to nuclear DNA replication in plant cells. Proc. Nati. Acad. Sci. U. S. A., 106, 803-807. Strain(s): 3377 PubMed: 19141634 DOI: 10.1073/pnas.0804270105 Shirabe, T., Ito, K., Yoshimura, E. 2008 Dequenching of Cu(I)-bathocuproinedisulfonate complexes for high-performance liquid chromatographic determination of phytochelatins, heavy-metal-binding peptides produced by the primitive red alga Cyanidioschyzon merolae. Anal. Chem., 80, 9360-9362. Strain(s): 3377 PubMed: 19551996 DOI: 10.1021/ac801741b Ohnuma, M., Yokoyama, T., Inouye, T., Sekine, Y., Tanaka, K. 2008 Polyethylene glycol (PEG)-mediated transient gene expression in a Red Alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 49, 117-120. Keywords: Cyanidioschyzon merolae; Hemagglutinin; Polyethylene glycol; Transformation; Transient expression system Strain(s): 3377 PubMed: 18003671 DOI: 10.1093/pcp/pcm157 Imamura, S., Hanaoka, M., Tanaka, K. 2008 The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I. EMBO J., 27, 2317-2327. Strain(s): 3377 PubMed: 18668124 DOI: 10.1038/emboj.2008.151 Sato, N., Moriyama, T. 2007 Genomic and biochemical analysis of lipid biosynthesis in the unicellular Rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. Eukaryot. Cell, 6, 1006-1017. Strain(s): 3377 PubMed: 17416897 DOI: 10.1128/EC.00393-06 Cunningham, Jr., F. X., Lee, H., Gantt, E. 2007 Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. Eukaryot. Cell, 6, 533-545. Strain(s): 1332, 3377 PubMed: 17085635 DOI: 10.1128/EC.00265-06 Nishida, K., Yagisawa, F., Kuroiwa, H., Yoshida, Y., Kuroiwa, T. 2007 WD40 protein Mda1 is purified with Dnm1 and forms a dividing ring for mitochondria before Dnm1 in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 104, 4736-4741. Strain(s): 3377 PubMed: 17360593 DOI: 10.1073/pnas.0609364104 Nozaki, H., Takano, H., Misumi, O., Terasawa, K., Matsuzaki, M., Maruyama, S., Nishida, K., Yagisawa, F., Yoshida, Y., Fujiwara, T., Takio, S., Tamura, K., Chung, S. J., Nakamura, S., Kuroiwa, H., Tanaka, K., Sato, N., Kuroiwa, T. 2007 A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. BMC Biol., 5, 28 (article ID). Strain(s): 1332, 3377 PubMed: 17623057 DOI: 10.1186/1741-7007-5-28 Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-i, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2007 Centromere dynamics in the primitive red alga Cyanidioschyzon merolae. Plant J., 49, 1122-1129. Keywords: centromere; CENH3; chromosome segregation; Cyanidioschyzon merolae Strain(s): 3377 PubMed: 17319844 DOI: 10.1111/j.1365-313X.2006.03024.x Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240. Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta Strain(s): 8, 274, 276, 277, 282, 353, 388, 699, 706, 715, 741, 763, 764, 1016, 1017, 1032, 1036, 1332, 1441, 1456, 1457, 1462, 1463, 1467, 1473, 3377 PubMed: 17116972 DOI: 10.2323/jgam.52.235 Nishida, K., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2006 Isolated chloroplast division machinery can actively constrict after stretching. Science, 313, 1435-1438. Strain(s): 3377 PubMed: 16960006 DOI: 10.1126/science.1129689 Terashita, M., Maruyama, S., Tanaka, K. 2006 Cytoplasmic localization of the single glutamine synthetase in a unicellular red alga, Cyanidioschyzon merolae 10D. Biosci. Biotechnol. Biochem., 70, 2313-2315. Keywords: Cyanidioschyzon merolae; glutamine synthetase; localization; nitrogen assimilation; red alga Strain(s): 3377 PubMed: 16960360 DOI: 10.1271/bbb.60174 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2005 Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta). J. Phycol., 41, 652-657. Keywords: CAD complex; evolution; phylogeny; red algae; pyrimidine biosynthetic cluster Strain(s): 1332, 3377 DOI: 10.1111/j.1529-8817.2005.00079.x Nishida, K., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2005 Cell cycle-regulated, microtubule-independent organelle division in Cyanidioschyzon merolae. Mol. Biol. Cell, 16, 2493-2502. Strain(s): 3377 PubMed: 15772156 DOI: 10.1091/mbc.E05-01-0068 Minoda, A., Nagasawa, K., Hanaoka, M., Horiuchi, M., Takahashi, H., Tanaka, K. 2005 Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae. Plant Mol. Biol., 59, 375-385. Keywords: Cyanidioschyzon merolae; microarray; photosynthesis; plastid; red algae; sigma factor Strain(s): 3377 PubMed: 16235106 DOI: 10.1007/s11103-005-0182-1 Misumi, O., Matsuzaki, M., Nozaki, H., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Yoshida, Y., Kuroiwa, H., Kuroiwa, T. 2005 Cyanidioschyzon merolae genome A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol., 137, 567-585. Strain(s): 3377 PubMed: 15681662 DOI: 10.1104/pp.104.053991 Minoda, A., Sakagami, R., Yagisawa, F., Kuroiwa, T., Tanaka, K. 2004 Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 45, 667-671. Keywords: Cultivation; — Cyanidioschyzon merolae; 5-FOA resistance; Homologous recombination; Red algae; Transformation Strain(s): 3377 PubMed: 18003671 DOI: 10.1093/pcp/pch087 Matsuzaki, M. et al. 2004 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature, 428, 653-657. Strain(s): 1332, 3377 PubMed: 15071595 DOI: 10.1038/nature02398 Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Higashiyama, T., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2004 Cyanobarterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J. Mol. Evol., 59, 103-113. Keywords: Chromista; cyanobacterial nuclear genes; phylogeny; plastids; primary endosymbiosis; secondary endosymbiosis Strain(s): 1332, 3377 PubMed: 15383913 DOI: 10.1007/s00239-003-2611-1 Nishida, K., Misumi, O., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2004 Triple Immunofluorescent Labeling of FtsZ, Dynamin, and EF-Tu revealed a loose association between the inner and outer membrane mitochondrial division machinery in the red alga Cyanidioschyzon merolae. J. Histochem. Cytochem., 52, 843-849. Keywords: FtsZ; dynamin; elongation factor; Tu; mitochondrial division; Cyanidioschyzon merolae; Alexa; triple immunofluorescence Strain(s): 3377 PubMed: 15208351 DOI: 10.1369/jhc.4C6315.2004 Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-I, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2004 The minimal eukaryotic ribosomal DNA units in the primitive red algae Cyanidioschyzon merolae. DNA Res., 11, 83-91. Keywords: BAC library; Genome organization; Nucleolus Strain(s): 3377 PubMed: 15449541 DOI: 10.1093/dnares/11.2.83 Miyaghishim, S., Nishida, K., Mori, T., Matsuzaki, M., Higashiyama, T., Kuroiwa, H., Kuroiwa, T. 2003 A plant-specific dynamin-related protein forms a ring at the chloroplast division site. Plant Cell, 15, 655-665. Strain(s): 3377 PubMed: 12615939 DOI: 10.1105/tpc.009373 Ohta, N., Matsuzaki, M., Misumi, O., Miyagishima, S., Nozaki, H., Tanaka, K., Shin-I, T., Kohara, Y., Kuroiwa, T. 2003 Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res., 10, 67-77. Keywords: Cyanidioschyzon merolae; red algae; plastid; genome sequencing Strain(s): 1332, 3377 PubMed: 12755171 DOI: 10.1093/dnares/10.2.67 Nozaki, H., Matsuzaki, M., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2003 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol., 56, 485-497. Keywords: eukaryotes; evolution; nuclear genes; outgroup; phylogeny; plantae; plastid; protein-coding genes; red algae Strain(s): 1332, 3377 PubMed: 12664168 DOI: 10.1007/s00239-002-2419-9 Nishida, K., Takahara M., Miyagishima S., Kuroiwa H., Matsuzaki M., Kuroiwa, T. 2003 Dynamic recruitment of dynamin for final mitochondrial severance in a red alga. Proc. Nati. Acad. Sci. U. S. A., 100, 2146-2151. Strain(s): 3377 PubMed: 12566569 DOI: 10.1073/pnas.0436886100 Kobayashi, T. Takahara, M., Miyagishima, S, Kuroiwa, H., Sasaki, N., Ohta, N., Kuroiwa, T. 2002 Detection and localization of a chloroplast-encoded HU-like protein that may organize chloroplast nucleoids. Plant Cell, 14, 1579-1589. Strain(s): 3377 PubMed: 12119376 DOI: 10.1105/tpc.002717 Miyagishima, S., Takahara, M., Mori, T., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2001b Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings. Plant Cell, 13, 2257-2268. Strain(s): 3377 PubMed: 11595800 DOI: 10.1105/tpc.010185 Miyagishima, S., Takahara, M., Kuroiwa, T. 2001a Novel filaments 5 nm diameter constitute the cytosolic ring of the plastid division apparatus. Plant Cell, 13, 707-721. Strain(s): 3377 PubMed: 11251107 DOI: 10.1105/tpc.13.3.707 Toda, K., Takano, H., Nozaki, H., Kuroiwa, T. 2001 The second serine acetyltransferase, bacterial-type O-acetylserine (thiol) lyase and eukaryotic-type O-acetylserine (thiol) lyase from the primitive red alga Cyanidioschyzon merolae. J. Plant Res., 114, 291-300. Keywords: Cysteine synthesis; Serine acetyltransferase; O-acetylserine (thiol) lyase; Primitive red alga; Cyanidioschyzon merolae Strain(s): 3377 DOI: 10.1007/PL00013990 Takahara, M., Takahashi, H., Matsunaga, S., Miyagishima, S., Takano, H., Sakai, A., Kawano, S., Kuroiwa, T. 2000 A putative mitochondrial ftsZ gene is present in the unicellular primitive red alga Cyanidioschyzon merolae. Mol. Gen. Genet., 264, 452-460. Keywords: Cyanidioschyzon merolae; ftsZ; Mitochondrial division; Plastid division; Primitive red alga Strain(s): 3377 PubMed: 11129049 DOI: 10.1007/s0043800003 Ohta, N., Sato, N., Kuroiwa, T. 1999 The organellar genomes of Cyanidioschyzon merolae. In Enigmatic Microorganisms and Life in Extreme Environments, Ed. by Seckbach, J., Kluwer Academic Publishers, pp. 139-149. Strain(s): 3377 Kuroiwa, T., Kuroiwa, H., Sakai, A., Takahashi, H., Toda, K., Itoh, R. 1998 The division apparatus of plastids and mitochondria. Int. Rev. Cytol., 181, 1-41. Keywords: Cytokinesis; Organellokinesis; Organelle division; Mitochondrial division; Plastid division; FtsZ; Contractile ring; Cell division Strain(s): 3377 DOI: 10.1016/S0074-7696(08)60415-5 Kuroiwa, T. 1998 The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids. Bioessays, 20, 344-354. Strain(s): 3377 DOI: 10.1002/(SICI)1521-1878(199804)20:4<344::AID-BIES11>3.0.CO;2-2 Ohta, N., Sato, N., Kuroiwa, T. 1998 Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res., 26, 5190-5198. Strain(s): 1332, 3377 PubMed: 9801318 DOI: 10.1093/nar/26.22.5190 Ohta, N., Satao, N., Ueda, K., Kuroiwa, T. 1997 Analysis of a plastid gene cluster reveals a close relationship between Cyanidioschyzon and Cyanidium. J. Plant Res., 110, 235-245. Keywords: Cyanidioschyzon merolae; Cyanidium caldarium; Plastid genome; Rhodophyta Strain(s): 3377 DOI: 10.1007/BF02509312 |
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