Strain number | NIES-670 | |||
---|---|---|---|---|
Phylum | Heterokontophyta | |||
Class | Dictyochophyceae | |||
Scientific name | Pseudochattonella verruculosa (Y.Hara & M.Chihara) S.Tanabe-Hosoi, D.Honda, S.Fukaya, Y.Inagaki & Y.Sako | |||
Synonym | Chattonella verruculosa Y.Hara & M.Chihara 1994; Verrucophora verruculosa (Y.Hara & Chihara) Eikrem 2007 | |||
Former name | ||||
Common name | ||||
Locality (Date of collection) | Harima-Nada, Seto Inland Sea Japan (1987-07-16) | |||
Latitude / Longitude | ||||
Habitat (Isolation source) | Marine (Seawater) | |||
History | < KAGAWA < Yoshimatsu, Sadaaki | |||
Isolator (Date of isolation) | Yoshimatsu, Sadaaki (1987-07-16) | |||
Identified by | Yoshimatsu, Sadaaki | |||
State of strain | Subculture; Unialgal; Clonal; Non-axenic | |||
Culture condition (Preculture condition) |
Medium:
ESM
Temperature: 20 C Light intensity: 24-39 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
|||
Gene information | 18S rRNA ( AB217629 AM075625 AY788948 ) , 28S rRNA ( AB217642 AM040504 ) , 16S rRNA ( AY864040 ) , ITS1-5.8S-ITS2 ( AM850212 ) , rbcL ( AB280607 AM850240 ) , rbcL-rbcS spacer ( AM850244 ) , CO1 ( AM850250 ) | |||
Cell size (min - max) | ||||
Organization | Unicellular; Flagellate | |||
Characteristics | Red tide | |||
Other strain no. | ||||
Remarks | Fragile species to transportation stresses; Read and agree "How to order 4.1" | |||
Movie |
Reference |
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Sako, Y.
2019
Ecophysiological studies of marine microorganisms by genome information.
Nippon Suisan Gakkaishi,
85,
281-290 (in Japanese).
Strain(s): 1, 7, 12, 293, 559, 603, 670 DOI: 10.2331/suisan.WA2633 Dittami, S. M., Riisberg, I., Edvardsen, B. 2013 Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta). Environ. Sci. Pollut. Res., 20, 6824-6837. Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR Strain(s): 670 PubMed: 23361173 DOI: 10.1007/s11356-012-1402-2 Skjelbred, B., Edvardsen, B., Andersen, T. 2012 Environmental optima for seven strains of Pseudochattonella (Dictyochophyceae, Heterokonta). J. Phycol., 49, 54-60. Keywords: compensation irradiance; growth rates; light; loss rates; Pseudochattonella; salinity; saturating irradiance; temperature Strain(s): 670 PubMed: 27008388 DOI: 10.1111/jpy.12008 Skjelbred, B., Horsberg, T. E., Tollefsen, K. E., Andersen, T., Edvardsen, B. 2011 Toxicity of the ichthyotoxic marine flagellate Pseudochattonella (Dictyochophyceae, Heterokonta) assessed by six bioassays. Harmful Algae, 10, 144-154. Keywords: Bioassays; Cytotoxicity assays; Fish exposure; Ichthyotoxicity; Pseudochattonella Strain(s): 670 DOI: 10.1016/j.hal.2010.08.007 Riisberg, I., Edvardsen, B. 2008 Genetic variation in bloom-forming ichthyotoxic Pseudochattonella species (Dictyochophyceae, Heterokonta) using nuclear, mitochondrial and plastid DNA sequence data. Eur. J. Phycol., 43, 413-422. Keywords: cox1; Dictyochophyceae; genetic variation; harmful algae; psbA; Pseudochattonella; rbcL; rDNA Strain(s): 670 DOI: 10.1080/06970260802299602 Hosoi-Tanabe, S., Honda, D., Fukaya, S., Otake, I., Inagaki, Y., Sako, Y. 2007 Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar rephidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycol. Res., 55, 185-192. Keywords: Chatonella verruculosa; Dictyochophyceae; flagellar apparatus; harmful algal bloom; phylogenetic analysis; Pseudochattonella verruculosa; Raphidophyceae Strain(s): 670 DOI: 10.1111/j.1440-1835.2007.00461.x Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238. Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model Strain(s): 1, 15, 548, 670, 716 PubMed: 17591448 DOI: 10.1016/j.ympev.2007.05.003 Edvardsen, B., Eikrem, W., Shalchian-Tabrizi, K., Riisberg, I., Johnsen, G., Naustvoll, L., Throndsen, J. 2007 Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. J. Phycol., 43, 1054-1070. Keywords: carotenoids; Chattonella; Dictyochophyceae; harmful algae; LSU rDNA; new taxon; phylogeny; SSU rDNA; ultrastructure Strain(s): 670 DOI: 10.1111/j.1529-8817.2007.00390.x Bowers, H. A., Tomas, C., Tengs, T., Kempton, J. W., Lewitus, A. J., Oldach, D. W. 2006 Raphidophyceae [Chadefaud ex Silva] systematics and rapid identification: sequence analyses and real-time PCR assays. J. Phycol., 42, 1333-1348. Keywords: Chattonella; Fibrocapsa; Heterosigma; PCR; Raphidophyceae; Taqman Strain(s): 670 DOI: 10.1111/j.1529-8817.2006.00285.x Hosoi-Tanabe, S., Otake, I., Sako, Y. 2006 Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C. marina, C. ovata, and C. verruculosa (Raphidophyceae) based on the rRNA gene family. Fish. Sci., 72, 1200-1208. Keywords: Chattonella; genetic homogeneity; phylogenetic analysis; Raphidophyceae; rRNA gene family Strain(s): 1, 5, 86, 121, 558, 559, 603, 670 DOI: 10.1111/j.1444-2906.2006.01277.x Hosoi-Tanabe, S. & Sako, Y. 2005 Species-specific detection and quantification of toxic marine Dinoflagellates Alexandrium tamarense and A. catenella by reai-time PCR assay. Mar. Biotechnol., 7, 506-514. Keywords: toxic dinoflagellate; — Alexandrium; paralytic shellfish poisoning (PSP); real-time PCR; species-specific identification; quantification Strain(s): 1, 7, 12, 293, 331, 559, 603, 670 PubMed: 16007374 DOI: 10.1007/s10126-004-4128-4 Hara, Y., Doi, K., Chihara, M. 1994 Four new species of Chattonella (Raphidophyceae, Chromophyta) from Japan. Jpn. J. Phycol. (Sôrui), 42, 407-420. Keywords: Chattonella; C. globosa; C. minima; C. ovata; C. verruculosa; Raphidophyceae; red tide organisms; taxonomy Strain(s): 118, 161, 603, 670, 849 |
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