Strain number | NIES-4392 | |||
---|---|---|---|---|
Phylum | Heterokontophyta | |||
Class | Bacillariophyceae | |||
Scientific name | Phaeodactylum tricornutum Bohlin | |||
Synonym | Nitzschia closterium f. minutissima Allen & Nelson 1910 | |||
Former name | ||||
Common name | Pennate diatom | |||
Locality (Date of collection) | off Blackpool, England, U.K. (1956-**-**) | |||
Latitude / Longitude | 54 / | |||
Habitat (Isolation source) | Marine (Seawater) | |||
History | < CCAP (2019); | |||
Isolator (Date of isolation) | De Martino & Ten-Hage (2003-**-**) | |||
Identified by | Coughlam | |||
State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2020 Sept] | |||
Culture condition (Preculture condition) |
Medium:
f/2
Temperature: 20 C Light intensity: 31 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 40 D |
|||
Gene information | Whole-genome ( ABQD00000000 ) , Mitochondrial DNA ( HQ840789 ) , Plastid DNA ( EF067920 ) | |||
Cell size (min - max) | 2 - 15 μm | |||
Organization | Unicellular | |||
Characteristics | Genome decoded strain (Bowler et al. 2008) | |||
Other strain no. |
Other collection strain no. : CCAP 1055/1; CCMP632; CCMP2561
Other strain no. : Pt1 8.6; Pt Gen |
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Remarks | Cryopreserved; Axenic | |||
Movie |
Reference |
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Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M.
2022
Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV—
Microb. Resour. Syst.,
38,
51-62.
Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine Strain(s): 12, 47, 48, 253, 274, 276, 277, 282, 286, 304, 331, 381, 387, 463, 623, 624, 699, 706, 715, 741, 1443, 2145, 2146, 2149, 2351, 2378, 2433, 2535, 2584, 2588, 2635, 2677, 2716, 2728, 2860, 3576, 3745, 4060, 4109, 4280, 4391, 4392 Santaeufemia, S., Abalde, J., Torres, E. 2019 Eco-friendly rapid removal of triclosan from seawater using biomass of a microalgal species: Kinetic and equilibrium studies. J. Hazard. Mater., 369, 674-683. Keywords: Sorption; Phaeodactylum tricornutum; Removal; Kinetic Strain(s): 4392 PubMed: 30826560 DOI: 10.1016/j.jhazmat.2019.02.083 Sun, L., Chin, W. C., Chiu, M. H., Xu, C., Lin, P., Schwehr, K. A., Quigg, A., Santschi, P. H. 2019 Sunlight induced aggregation of dissolved organic matter: Role ofproteins in linking organic carbon and nitrogen cycling in seawater. Sci. Total Environ., 654, 872-877. Keywords: Protein; Photo-flocculation; ROS; DOM Strain(s): 4392 PubMed: 30453257 DOI: 10.1016/j.scitotenv.2018.11.140 Oudot-Le Secq, M. P., Green, B. R. 2011 Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene, 476, 20-26. Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements Strain(s): 4392 PubMed: 21320580 DOI: 10.1016/j.gene.2011.02.001 Bowler, C. et al. 2008 The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 39–244. Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements Strain(s): 4392 PubMed: 18923393 DOI: 10.1038/nature07410 Oudot-Le Secq, M. P., Grimwood, J., Shapiro, H., Armbrust, E. V., Bowler, C., Green, B. 2007 Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics, 277, 427–439. Keywords: Chloroplast; Plastid; Genome; Secondary endosymbiosis; Diatom Strain(s): 4392 PubMed: 17252281 DOI: 10.1007/s00438-006-0199-4 |
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