A big image opens when the thumbnail is clicked.(nies-2285.jpg)
Strain number NIES-2285  
Phylum Streptophyta  
Class Klebsormidiophyceae  
Scientific name Klebsormidium nitens (Kützing) Lokhorst  
Synonym Ulothrix nitens Kützing; Hormidium nitens (Kützing) Rabenhorst 1863; Chlorhormidium flaccidum var. nitens (Kützing) Farooqui 1969; Chlorhormidium nitens (Meneghini) Komaromy 1976  
Former name Formerly identified as Klebsormidium flaccidum (Kützing) Silva, Mattox & Blackwell[2016 Jun]; Hormidium barlowi  
Common name  
Locality (Date of collection) Barlow, Madison, Wisconsin, USA  
Latitude / Longitude 43.073308 /  
Habitat (Isolation source) Freshwater  
History < IAM (2007) < BIU (UTEX; 1965);  
Isolator (Date of isolation) Pringsheim, E. G.  
Identified by Handa, Shinji (Reidentify)  
State of strain Cryopreservation; Unialgal; Clonal; Axenic[2023 Jun]  
Culture condition
(Preculture condition)
Medium:  C (agar)  
Temperature:  20 C
Light intensity:  5-11 µmol photons/m2/sec, L/D cycle:  10L:14D
Duration:  6 M  
Gene information Whole-genome ( BANV00000000 ) , Mitochondria DNA ( DF238763 ) , Plastid DNA ( DF238762 )  
Cell size (min - max) 5 - 10 μm  
Organization  
Characteristics Genome decoded strain (Hori et al. 2014)  
Other strain no. Other collection strain no. : IAM C-117; UTEX 321; SAG 335-1a; CCAP 335/1a
 
Remarks Cryopreserved; Axenic 
Movie  
Reference
Tansley, C., Houghton, J., Rose, A. M. E., Witek, B., Payet, R. D., Wu, T., Miller, J. B. 2023 CIPK-B is essential for salt stress signalling in Marchantia polymorpha. New Phytol., 237, 2210-2223.
Keywords: calcineurin B-like protein; calcium signalling; CBL-interacting protein kinase; evolution; liverwort; Marchantia polymorpha; salt stres
Strain(s): 2285 
PubMed: 36660914
DOI: 10.1111/nph.18633

Nazipova, A., Makshakova, O., Kozlova, L. 2023 The in silico characterization of monocotyledonous α-L-Arabinofuranosidases on the example of maize. Life-Basel, 13, 266 (article ID).
Keywords: α-L-arabinofuranosidase; arabinoxylan; maize; homology modeling; molecular docking
Strain(s): 2285 
PubMed: 36836625
DOI: 10.3390/life13020266

Tounosu, N., Sesoko, K., Hori, K., Shimojima, M., Ohta, H. 2023 Cis‑regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens. Sci Rep, 13, 9635 (article ID).
Strain(s): 2285 
PubMed: 37322074
DOI: 10.1038/s41598-023-36500-x

Pilátová, J., Pánek, T., Oborník, M., Čepička, I., Mojzeš, P. 2022 Revisiting biocrystallization: purine crystalline inclusions are widespread in eukaryotes. ISME J., 16, 2290-2294.
Strain(s): 673039951604214622852860 
PubMed: 35672454
DOI: 10.1038/s41396-022-01264-1

Chatelain, P., Blanchard, C., Astier, J., Klinguer,A., Wendehenne, D., Jeandroz, S., Rosnoblet, C. 2022 Reliable reference genes and abiotic stress marker genes in Klebsormidium nitens. Sci Rep, 12, 18988 (article ID).
Strain(s): 2285 
PubMed: 36348043
DOI: 10.1038/s41598-022-23783-9

Rosas-Santiago, P., Zechinelli Pérez, K., Gómez Méndez, M. F., Vera López Portillo, F., Ruiz Salas, J. L., Cordoba Martínez, E., Acosta Maspon, A., Pantoja, O. 2021 A differential subcellular localization of two copper transporters from the COPT family suggests distinct roles in copper homeostasis in Physcomitrium patens. Plant Physiol. Biochem., 167, 459-469.
Keywords: Copper transport; Copper uptake; COPT; Physcomitrium patens
Strain(s): 2285 
PubMed: 34418592
DOI: 10.1016/j.plaphy.2021.08.023

Mojzeš, P., Gao, L., Ismagulova, T., Pilátová, J., Moudříková, Š., Gorelova, O., Solovchenko, A., Nedbal, L., Salih, A. 2020 Guanine, a high-capacity and rapid-turnover nitrogen reserve in microalgal cells. Proc. Natl. Acad. Sci. U. S. A., 117, 32722-32730.
Strain(s): 228525872860 
PubMed: 33293415
DOI: 10.1073/pnas.2005460117

Yokono, M., Takabayashi, A., Kishimoto, J., Fujita, T., Iwai, M., Murakami, A., Akimoto, S., Tanaka, A. 2019 The PSI-PSII megacomplex in green plants. Plant Cell Physiol., 60, 1098–1108.
Keywords: Energy transfer; Nonphotochemical quenching; Photosystem
Strain(s): 14429630322852541 
PubMed: 30753722
DOI: 10.1093/pcp/pcz026

Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A., Stitt, M., Mutwil, M. 2019 Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nat. Commun., 10, 737 (article ID).
Strain(s): 2285 
PubMed: 30760717
DOI: 10.1038/s41467-019-08703-2

de Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R. 2018 Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nat. Commun., 9, 1341 (article ID).
Keywords: DNA methylation; Epigenomics; Molecular evolution; Transposition
Strain(s): 2285 
PubMed: 29632298
DOI: 10.1038/s41467-018-03724-9

Takano, H., Tsunefuka, T., Takio, S., Ishikawa, H., Takechi, K. 2018 Visualization of plastid peptidoglycan in the charophyte alga Klebsormidium nitens using a metabolic labeling method. Cytologia, 83, 375-380.
Keywords: charophyte; Evolution; Klebsormidium nitens; Plastid peptidoglycan; Streptophyte
Strain(s): 2285 
DOI: 10.1508/cytologia.83.375

Ohtaka,K., Hori, K., Kanno, Y., Seo, M., Ohta, H. 2017 Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens. Plant Physiol., 174, 1621-1632.
Strain(s): 2285 
PubMed: 28533212
DOI: 10.1104/pp.17.00274

Kobayashi, Y., Takusagawa, M., Harada, N., Fukao, Y., Yamaoka, S., Kohchi, T., Hori, K., Ohta, H., Shikanai, T., Nishimura, Y. 2016 Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. Genome Biol. Evol., 8, 1-16.
Keywords: chloroplast; nucleoid; evolution; endosymbiosis
Strain(s): 2285 
PubMed: 26608058
DOI: 10.1093/gbe/evv233

Kondo, S., Hori, K., Sasaki-Sekimoto, Y., Kobayashi, A., Kato, T., Yuno-Ohta, N., Nobusawa, T., Ohtaka, K., Shimojima, M., Ohta, H. 2016 Primitive extracellularlipid components on the surface of the charophytic alga Klebsormidium flaccidum and their possible biosynthetic pathways as deduced from the genome sequence. Front. Plant Sci., 7, 952 (article ID).
Keywords: Klebsormidium flaccidum; Chlamydomonas reinhardtii; Arabidopsis thaliana; extracellular lipids; polyester backbone; wax; cuticle
Strain(s): 2285 
PubMed: 27446179
DOI: 10.3389/fpls.2016.00952

Koeduka, T., Ishizaki, K., Mwenda, C. M., Hori, K., Sasaki-Sekimoto, Y., Ohta, H., Kohchi, T., Matsui, K. 2015 Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family. Planta, 242, 1175-1186.
Keywords: Allene oxide synthase; Plant evolution; CYP74; Hydroperoxide lyase; C8 volatiles
Strain(s): 2285 
PubMed: 26105654
DOI: 10.1007/s00425-015-2355-8

Hori, K. Maruyama, F., Fujisawa, T., Togashi, T., Yamamoto, N., Seo, M., Sato, S., Yamada, T., Mori, H., Tajima, N., Moriyama, T., Ikeuchi, M., Watanabe, M., Wada, H., Kobayashi, K., Saito, M., Masuda, T., Sasaki-Sekimoto, Y., Mashiguchi, K., Awai, K., Shimojima, M., Masuda, S., Iwai, M., Nobusawa, T., Narise, T., Kondo, S., Saito, H., Sato, R., Murakawa, M., Ihara, Y., Oshima-Yamada, Y., Ohtaka, K., Satoh, M., Sonobe, K., Ishii, M., Ohtani, R., Kanamori-Sato, M., Honoki, R., Miyazaki, D., Mochizuki, H., Umetsu, J., Higashi, K., Shibata, D., Kamiya, Y., Sato, N., Nakamura, Y., Tabata, S., Ida, S., Kurokawa, K., Ohta, H. 2014 Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat. Commun., 5, 3978 (article ID).
Strain(s): 2285 
PubMed: 24865297
DOI: 10.1038/ncomms4978

Fawley, M. W. 1991 Disjunct distribution of the xanthophyll loroxanthin in the green algae (Chlorophyta). J. Phycol., 27, 544-548.
Keywords: carotenoids; Chlorophyta; high-performance liquid chromatography; loroxanthin; xanthophylls
Strain(s): 2285 
DOI: 10.1111/j.0022-3646.1991.00544.x

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