Strain number | NIES-2142 | |||
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Phylum | Heterokontophyta | |||
Class | Chrysophyceae | |||
Scientific name | Ochromonas danica Pringsheim | |||
Synonym | ||||
Former name | ||||
Common name | ||||
Locality (Date of collection) | near Everdrup, Denmark | |||
Latitude / Longitude | 55.203341 / 11.94647 | |||
Habitat (Isolation source) | Freshwater | |||
History | < IAM (2007) < UTEX (1996); | |||
Isolator (Date of isolation) | Pringsheim, E. G. (1954-**-**) | |||
Identified by | Pringsheim, E. G. | |||
State of strain | Subculture; Unialgal; Clonal; Axenic[2018 Mar] | |||
Culture condition (Preculture condition) |
Medium:
O (semi-solid)
Temperature: 20 C Light intensity: 13-16 µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 1 M |
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Gene information | ITS1-5.8S-ITS2 ( Y07976 ) , 16S rRNA ( X53183 ) , 28S rRNA ( KM590767 GU935636 Y07977 ) , gapC ( AJ512345 ) , gapC1 ( AJ512344 ) , psaA ( KM590836 ) , rbcL ( GU935657 ) , vppa ( AJ251725 ) , odbgp ( LC140879 ) | |||
Cell size (min - max) | ||||
Organization | ||||
Characteristics | Mixotrophic ; Phagotrophic | |||
Other strain no. |
Other collection strain no. : IAM CS-4 (=CS-2); ATCC 30004; CCAP 933/2; SAG 933-7; UTEX L 1298; CCAP 933/2B; CCMP585
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Remarks | Axenic | |||
Movie | https://www.youtube.com/watch?v=bEN7IN47VNA&list=PLFTJlLsZcVbiJY3ygYAPKeVOfDdOh9UEW&index=23 |
Reference |
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Kashiyama, Y. et al.
2019
Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth.
ISME J.,
13,
1899-1910.
Strain(s): 8, 254, 274, 286, 324, 331, 353, 381, 494, 623, 624, 997, 1012, 1013, 1015, 1320, 1330, 1333, 1334, 1335, 1372, 1377, 1388, 1390, 1396, 1397, 1408, 1438, 1439, 1441, 1868, 1964, 2008, 2142, 2144, 2149, 2300, 2305, 2325, 2433, 2498, 2502, 2566, 2584, 2586, 2589, 2590, 2677, 2878, 3356, 3374, 3775, 3876 PubMed: 30809012 DOI: 10.1038/s41396-019-0377-0 Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29. Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae Strain(s): 1, 8, 9, 14, 15, 17, 71, 115, 223, 225, 233, 234, 265, 274, 275, 276, 277, 278, 279, 280, 281, 282, 284, 293, 323, 324, 330, 333, 344, 345, 346, 347, 348, 350, 353, 372, 377, 388, 391, 395, 407, 408, 409, 413, 414, 417, 461, 462, 466, 487, 534, 548, 553, 556, 557, 558, 559, 560, 562, 587, 588, 589, 590, 603, 605, 622, 623, 695, 696, 697, 698, 699, 700, 701, 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 741, 765, 766, 767, 805, 837, 997, 1001, 1002, 1003, 1004, 1005, 1006, 1007, 1009, 1011, 1016, 1017, 1044, 1045, 1046, 1047, 1302, 1303, 1324, 1327, 1330, 1339, 1340, 1349, 1353, 1370, 1375, 1376, 1379, 1383, 1384, 1385, 1386, 1387, 1391, 1392, 1393, 1395, 1398, 1399, 1400, 1401, 1699, 1700, 1730, 1813, 1815, 1816, 1826, 1827, 1831, 1862, 1863, 1864, 1865, 1874, 1963, 1964, 1965, 1974, 1975, 1976, 2142, 2143, 2144, 2145, 2147, 2148, 2300, 2331, 2332, 2351, 2363, 2364, 2365, 2369, 2370, 2376, 2506, 2533, 2534, 2535, 2536, 2537, 2590, 2633, 2668, 2689, 2690, 2691, 2693, 2694, 2696, 2697, 2707, 2716, 2717, 2718, 2720, 2722, 2723, 2725, 2726, 2729, 2730, 2731, 2732, 2770, 2771, 2772, 2773, 2839, 2840, 2841, 2842, 2843, 2844, 2859, 2872, 2878, 2890, 2899, 3391, 3689, 3690, 3691 Yamamoto, Y., Kawashima, D., Hashizume, A., Hisamotsu, M., Isono, N. 2013 Purification and characterization of 1,3-β-D-glucan phosphorylase from Ochromonas danica. Biosci. Biotechnol. Biochem., 77, 130411-130416. Keywords: 1,3-β-D-glucan phosphorylase; Ochromonas danica; laminarin; laminarioligosaccharides; 1,3-β-D-glucan Strain(s): 2142 PubMed: 24018693 DOI: 10.1271/bbb.130411 Kawahara, T., Kumaki, Y., Kamada, T., Ishii, T., Okino, T. 2009 Absolute configuration of chlorosulfolipids from the chrysophyta Ochromonas danica. J. Org. Chem., 74, 6016-6024. Strain(s): 2142 PubMed: 19627129 DOI: 10.1021/jo900860e McKay, R. M. & Gibbs, S. P. 1989 Immunocytochemical localization of ribulose 1,5-bisphosphate carboxylase/oxygenase in light-limited and light-saturated cells of Chlorella pyrenoidosa. Protoplasma, 149, 31-37. Keywords: pyrenoid; ribulose 1,5-bisphosphate carboxylase/oxygenase; Chlorella pyrenoidosa; immunocytochemistry Strain(s): 687, 2142 Witt, D. & Stackebrandt, E. 1988 Disproving the hypothesis of a common ancestry for the Ochromonas danica chrysoplast and Heliobacterium chlorum. Arch. Mikrobiol., 150, 244-248. Strain(s): 2142 DOI: 10.1007/BF00407787 Coleman, A. W. 1988 The autofluorescent flagellum: a new phylogenetic enigma. J. Phycol., 24, 118-120. Keywords: autofluorescence; Chrysophyceae; flagellum; fluorescence; heterokont; Ochromonas; photoreceptor; Prymnesium Strain(s): 2142, 2144 DOI: 10.1111/j.1529-8817.1988.tb04465.x |
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