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Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K.
2012
A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa.
Fish. Sci.,
78,
375-379.
Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ Strain(s): 298 DOI: 10.1007/s12562-011-0442-8 |
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Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K.
2012
Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures.
Appl. Environ. Microbiol.,
78,
5353-5360.
Strain(s): 87, 102, 298 PubMed: 22636003 DOI: 10.1128/AEM.00626-12 |
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Yabuki, A., Ishida, K-I.
2011
Mataza hastifera n. g., n. sp.: a possible new lineage in the Thecofilosea (Cercozoa).
J. Eucaryot. Microbiol.,
58,
94-102.
Keywords: Cryomonadida; Cryothecomonas; environmental sequence; extrusome; phylogeny; Protaspis; taxonomy; ultrastructure Strain(s): 2568 DOI: 10.1111/j.1550-7408.2010.00524.x |
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Yabuki, A., Nakayama, T., Yubuki, N., Hashimoto, T., Ishida, K-I. Inagaki, Y.
2011
Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba".
J. Eucaryot. Microbiol.,
58,
319-331.
Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure Strain(s): 1390 PubMed: 21569159 DOI: 10.1111/j.1550-7408.2011.00552.x |
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Yabuki, A., Tame, A., Mizuno, K.
2023
Podomonas kaiyoae n. sp., a novel apusomonad growing axenically.
J. Eukaryot. Microbiol.,
70,
e12946 (article ID).
Strain(s): 4540 PubMed: 36047902 DOI: 10.1111/jeu.12946 |
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Yabuki, A., Tanifuji, G., Kusaka, C., Takishia, K., Fujikura, K.
2016
Hyper-eccentric structural genes in the mitochondrial genome of the algal parasite Hemistasia phaeocysticola.
Genome Biol. Evol.,
8,
2870-2878.
Keywords: gene fragmentation; RNA processing; mitochondrial genome; diplonemids; Euglenozoa Strain(s): 3356 PubMed: 27566761 DOI: 10.1093/gbe/evw207 |
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Yagawa, Y., Aizawa, K., Yang, S.-Y., Miyachi, S.
1986
Release of carbonic anhydrase from the cell surface of Chlamydomonas reinhardtii by trypsin.
Plant Cell Physiol.,
27,
215-221.
Keywords: carbonic anhydrase; cell surface; Chlamydomonas reinhardtii; trypsin treatment Strain(s): 2235 DOI: 10.1093/oxfordjournals.pcp.a077093 |
|
Yagawa, Y., Muto, S., Miyachi, S.
1987
Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. I. Purification and properties of the enzyme.
Plant Cell Physiol.,
28,
1253-1262.
Keywords: carbonic anhydrase; chloride ion-activation; Porphyridium cruentum Strain(s): 2138 DOI: 10.1093/oxfordjournals.pcp.a077413 |
|
Yagawa, Y., Muto, S., Miyachi, S.
1987
Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. II. Distribution and role in photosynthesis.
Plant Cell Physiol.,
28,
1509-1516.
Keywords: anti-Porphyridium carbonic anhydrase antibody; carbonic anhydrase; immunogold electron microscopy; intracellular distribution; Porphyridium cruentum Strain(s): 2138 DOI: 10.1093/oxfordjournals.pcp.a077445 |
|
Yagawa, Y., Muto, S., Miyachi, S.
1988
Carbonic anhydrase of Chlamydomonas reinhardtii. Cellular distribution and subunit constitution in two strains.
Plant Cell Physiol.,
29,
185-188.
Keywords: carbonic anhydrase (cellular distribution); Chlamydomonas Strain(s): 2235 |
|
Yagawa, Y., Shiraiwa, Y., Miyachi, S.
1984
Carbonic anhydrase from the blue-green alga (cyanobacterium) Anabaena variabilis.
Plant Cell Physiol.,
25,
775-783.
Keywords: Anabaena variabilis; blue-green alga; carbonic anhydrase (EC4.2.1.1); cyanobacterium; enzyme purification Strain(s): 2093 DOI: 10.1093/oxfordjournals.pcp.a076772 |
|
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R.
1984
Growth characteristics of axenic and unialgal Microcystis isolated from Lake Kasumigaura.
Jpn. J. Water Poll. Res.,
7,
496-503 (in Japanese with English summary).
Keywords: Microcystis; bacteria; growth; axenic; algae Strain(s): 478, 604 |
|
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R.
1987
Limiting nutrients of algal growth in Lake Kasumigaura.
Jpn. J. Water Poll. Res.,
10,
115-122 (in Japanese with English summary).
Keywords: Microcystis; blue-green algae; nutrients; algal growth potential Strain(s): 35, 478 |
|
Yagi, O., Ohkubo, N., Tomioka, N., Okada, M.
1989
Limiting nutrients of algal growth in Ushiku Marsh.
Jpn. J. Limnol.,
50,
139-148 (in Japanese with English summary).
Keywords: algal growth potential; Microcystis; Selenastrum; nutrient Strain(s): 35, 478 |
|
Yagi, O., Sudo, R., Imaoka, T., Teranishi, S.
1984
Algal growth potential on munisipal wastewater using red tide organisms.
Res. Rep. Natl. Inst. Environ. Stud.,
No. 63,
231-242 (in Japanese with English summary).
Strain(s): 35 |
|
Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T.
2009
Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae.
Plant J.,
60,
882-893.
Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS) Strain(s): 3377 PubMed: 19709388 DOI: 10.1111/j.1365-313X.2009.04008.x |
|
Yalikun, Y., Ota, N., Guo, B., Tang, T., Zhou, Y., Lei, C., Kobayashi, H., Hosokawa, Y., Li, M., Enrique Muñoz, H., Di Carlo, D., Goda, K., Tanaka Y.
2020
Effects of flow-induced microfluidic chip wall deformation on imaging flow cytometry.
Cytom. Part A,
97,
909-920.
Keywords: glass microchannel; high-speed imaging flow cytometry; microchannel deformation effects; sample focusing Strain(s): 48 PubMed: 31856398 DOI: 10.1002/cyto.a.23944 |
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Yamada, E., Hirota, T., Hatori, N., Kitao, Y., Fuse, Y., Aoki, S., Karatani, H., Matsunaga, T.
2012
Characterization of protein-like fluorophores released from lake phytoplankton on the basis of fractionation and electrophoresis.
Anal. Sci.,
28,
595-600.
Strain(s): 109, 275, 665 PubMed: 22729046 DOI: 10.2116/analsci.28.595 |
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Yamada, E., Ohara, S., Uehara, T., Hirota, T., Hatori, N., Fuse, Y., Aoki, S.
2012
Biodegradation of dissolved organic matter (DOM) released from phytoplankton in Lake Biwa.
Anal. Sci.,
28,
675-681.
Strain(s): 109, 275, 665 PubMed: 22790369 DOI: 10.2116/analsci.28.675 |
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Yamada, E., Sasai, K., Higa, R., Mizuguchi, H., Fuse Y.
2020
Characterization and dynamic analysis of dissolved proteins in Lake Biwa using two-dimensional electrophoresis.
Anal. Sci.,
36,
753-759.
Strain(s): 109, 275, 391, 665 PubMed: 31956160 DOI: 10.2116/analsci.19P450 |
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Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y.
2018
Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers.
J. Environ. Safety,
9,
23-32.
Keywords: photoirradiation; wavelength cut filter; photodegradation; dissolved organic matter; fulvic-like fluorophore; protein-like fluorophore; environmental waters Strain(s): 109, 275, 665 DOI: 10.11162/daikankyo.E17RP1101 |
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Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S.
2019
Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles).
J. Phycol.,
55,
196-203.
Keywords: annulus; diatom; pattern center; scale; sternum Strain(s): 2565 PubMed: 30320892 DOI: 10.1111/jpy.12800 |
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Yamada, K., Moriyama, R., Hatano, S.
1987
Production of osmotically labile cells in Chlorella ellipsoidea C-27 and C-102 by enzyme treatment.
Agric. Biol. Chem.,
51,
579-580.
Strain(s): 2170 DOI: 10.1080/00021369.1987.10868044 |
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Yamada, K., Nagasato, C., Motomura, T., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K., Yoshikawa, S.
2017
Mitotic spindle formation in Triparma laevis NIES-2565 (Parmales, Heterokontophyta).
Protoplasma,
254,
461-471.
Keywords: Central spindle; Centriole; Diatom; Extranuclear spindle; Mitosis; Nuclear envelope Strain(s): 2565 PubMed: 27048177 DOI: 10.1007/s00709-016-0967-x |
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Yamada, K., Yoshikawa, S., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K.
2014
Effects of silicon-limitation on growth and morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta).
PLoS One,
9,
e103289 (article ID).
Strain(s): 2565 PubMed: 25054645 DOI: 10.1371/journal.pone.0103289 |
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Yamada, K., Yoshikawa, S., Ohki, K., Ichinomiya, M., Kuwata, K., Motomura, T., Nagasato, C.
2016
Ultrastructural analysis of siliceous cell wall regeneration in the stramenopile Triparma laevis (Parmales, Bolidophyceae).
Phycologia,
55,
602-609.
Keywords: Cell wall regeneration; Chloroplast endoplasmic reticulum; Exocytosis; Silica biomineralization; Silica deposition vesicle Strain(s): 2565 DOI: 10.2216/16-32.1 |
|
Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J.
2010
Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan.
J. Oceanogr.,
66,
755-771.
Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM Strain(s): 2837, 2838, 2839, 2841, 2842, 2843, 2844 DOI: 10.1007/s10872-010-0062-4 |
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Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M.
2017
Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema.
Phycol. Res.,
65,
217-225.
Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA Strain(s): 16, 223, 2837, 2838, 2842 DOI: 10.1111/pre.12179 |
|
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N.
1985
Studies on earthy-musty odor in natural water (1). Growth characteristics and 2-methylisoborneol production of Phormidium tenue.
Jpn. J. Water Poll. Res.,
8,
515-521 (in Japanese with English summary).
Keywords: blue-green algae; Phormidium tenue; growth characteristics; headspace-GC analysis; 2-methylisoborneol Strain(s): 512 |
|
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N.
1986
Studies on earthy-musty odor in natural water (3). Isolation of bacteria-free Phormidium tenue and the effect of associated bacteria on the growth of axenic P. tenue.
Jpn. J. Water Poll. Res.,
9,
379-385 (in Japanese with English summary).
Keywords: Phormidium tenue; axenic; growth; 2-methylisoborneol; bacteria interaction Strain(s): 512 |
|
Yamada, R., Yokota, M., Matsumoto, T., Hankamer, B., Ogino, H.
2022
Promoting cell growth and characterizing partial symbiotic relationships in the co-cultivation of green alga Chlamydomonas reinhardtii and Escherichia coli.
Biotechnol. J.,
18,
e2200099 (article ID).
Keywords: Chlamydomonas reinhardtii; co-culture; Escherichia coli; photosynthesis; symbiotic relationship Strain(s): 2238 PubMed: 36479591 DOI: 10.1002/biot.202200099 |
|
Yamada, T. & Sakaguchi, K.
1981
Protoplast induction in Chlorella species.
Agric. Biol. Chem.,
45,
1905-1909.
Strain(s): 685, 2160, 2165, 2170, 2189 DOI: 10.1271/bbb1961.45.1905 |
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Yamada, T. & Sakaguchi, K.
1982
Comparative studies on Chlorella cell walls: Induction of protoplast formation.
Arch. Mikrobiol.,
132,
10-13.
Strain(s): 227, 686, 2159, 2163, 2166, 2168, 2171, 2189, 2352 DOI: 10.1007/BF00690809 |
|
Yamada, T. K., Miyaji, K., Nozaki, H.
2008
A taxonomic study of Eudorina unicocca (Volvocaceae, Chlorophyceae) and related species, based on morphology and molecular phylogeny.
Eur. J. Phycol.,
43,
317-326.
Keywords: aplanosporic strain; Eudorina unicocca; Eudorina peripheralis stat. nov.; Chlorophyceae; molecular phylogeny; morphology; taxonomy; Volvocales; Yamagishiella Strain(s): 578, 666, 717, 722, 723, 724, 725, 726, 870, 872, 1855, 1856, 1857, 1858, 1859, 1860, 1861 DOI: 10.1080/09670260701763484 |
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Yamada, T. K., Tsuchikane, Y., Wu, J.-T., Sekimoto, H., Miyaji, K., Nozaki, H.
2008
Morphology and molecular phylogeny of Eudorina sp. (Volvocaceae, Chlorophyceae) from Taiwan.
Hikobia,
15,
135-143.
Keywords: Eudorina elegans; Eudorina minodii; Eudorina unicocca; Eudorina peripheralis; Chlorophyceae; molecular phylogeny; morpholohy; taxsonomy; Volvocales Strain(s): 724, 725, 726, 1858, 2734, 2735 |
|
Yamada, T., Nakada, T., Miyaji, K., Nozaki, H.
2006
Morphology and molecular phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) newly found in Japan.
J. Jpn. Bot.,
81,
139-147.
Keywords: Chlorophyceae; Gonium multicoccum; ITS2; rbcL; Volvocales Strain(s): 289, 569, 572, 653, 654, 851, 857, 1038, 1707, 1708, 1709, 1711, 1713 |
|
Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T.
2018
Aggregate formation during the viral lysis of a marine diatom.
Front. Mar. Sci.,
15,
167 (article ID).
Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle Strain(s): 3715 DOI: 10.3389/fmars.2018.00167 |
|
Yamagishi, S., Yamamoto, K., Takahashi, K., Kawai-Toyooka, H., Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H.
2024
Evolutionary analysis of MID homologs during the transition from homothallic species to heterothallic species in Volvox sect. Volvox (Chlorophyceae).
Phycol. Res.,
72,
46-55.
Keywords: male gamete; mating system; minus dominance gene (MID); molecular evolution; sex; sperm packet; volvocine green algae Strain(s): 289, 456, 460, 541, 544, 545, 569, 572, 574, 582, 652, 653, 654, 732, 851, 852, 857, 872, 891, 892, 1362, 1363, 1708, 1710, 1859, 2457, 2569, 2735, 2736, 2740, 3382, 3383, 3780, 3782, 3786, 3874, 3984, 3986, 3988, 4021, 4025, 4336, 4432, 4535, 4536, 4537 DOI: 10.1111/pre.12538 |
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Yamagishi, T. & Kawai, H.
2012
Cytoskeleton organization during the cell cycle in two stramenopile microalgae, Ochromonas danica (Chrysophyceae) and Heterosigma akashiwo (Raphidophyceae), with special reference to F-actin organization and its role in cytokinesis.
Protist,
163,
686-700.
Keywords: Cytokinesis; F-actin; Heterosigma; microtubule; Ochromonas; phalloidin; stramenopiles Strain(s): 6 PubMed: 22104586 DOI: 10.1016/j.protis.2011.09.003 |
|
Yamagishi, T., Fuchida, S., Katsumata, M., Horie, Y., Mori, F., Kitayama, A., Kawachi, M., Koshikawa, H., Nozaki, T., Kumagai, H., Ishibashi, J-I., Tatarazako, N.
2018
Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981.
Ecotoxicology,
27,
1303–1309.
Keywords: Cyanobium sp.; Deep-sea mining; Delayed fluorescence; Ecotoxicological bioassay; Heavy metal Strain(s): 981 PubMed: 30311132 DOI: 10.1007/s10646-018-1989-2 |
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Yamagishi, T., Horie, Y., Tatarazako, N.
2017
Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata.
Chemosphere,
174,
1-7.
Keywords: Azole fungicide; Clarithromycin; Erythromycin; Isobologram; Ketoconazole; Pseudokirchneriella subcapitata Strain(s): 35 PubMed: 28152378 DOI: 10.1016/j.chemosphere.2017.01.071 |
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Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N.
2016
Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981).
Ecotoxicology,
25,
1751-1758.
Keywords: Algal growth inhibition test; Cyanobium sp.; Delayed fluorescence; Marine cyanobacteria Strain(s): 981 PubMed: 27633095 DOI: 10.1007/s10646-016-1718-7 |
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Yamagishi, T., Kurihara, A., Kawai, H.
2015
A ribbon-like structure in the ejective organelle of the green microalga Pyramimonas parkeae (Prasinophyceae) consists of core histones and polymers containing N-acetyl-glucosamine.
Protist,
166,
522-533.
Keywords: Core histone; ejectisome; N-acetyl-glucosamine; Pyramimonas parkeae Strain(s): 251, 254 PubMed: 26398336 DOI: 10.1016/j.protis.2015.08.003 |
|
Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M.
2019
Ecotoxicological bioassay using marine algae for deep-sea mining.
In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham,
pp. 255-271.
Strain(s): 323, 613, 969, 971, 981, 1000, 1001, 1310, 1411, 2304, 2587, 2590, 2670, 2672 DOI: 10.1007/978-3-030-12696-4_10 |
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Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N.
2017
Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.
PLoS One,
12,
e0171259 (article ID).
Strain(s): 35 PubMed: 28152022 DOI: 10.1371/journal.pone.0171259 |
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Yamagishi, T., Yamaguchi, H., Suzuki, S., Yoshikawa, M., Jameson, I., Lorenz, M., Nobles, D. R., Campbell, C., Seki, M., Kawachi, M., Yamamoto, H.
2020
Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide.
PLoS One,
15,
e0241889 (article ID).
Strain(s): 35 PubMed: 33166324 DOI: 10.1371/journal.pone.0241889 |
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Yamaguchi, H., Arisaka, H., Otsuka, N., Tomaru, Y.
2014
Utilization of phosphate diesters by phosphodiesterase-producing marine diatoms.
J. Plankton Res.,
36,
281-285.
Keywords: marine diatoms; phosphate diester; phosphodiesterase; phosphorus Strain(s): 6 DOI: 10.1093/plankt/fbt091 |
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Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T.
2008
Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences.
Phycol. Res.,
56,
127-138.
Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure Strain(s): 716, 1870 DOI: 10.1111/j.1440-1835.2008.00493.x |
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Yamaguchi, H., Nakayama, T., Hongoh, Y., Kawachi, M., Inouye, I.
2014
Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota).
J. Plant Res.,
127,
241-247.
Keywords: 18S rRNA gene; 16S rRNA gene; Symbiosis; Hatena arenicola; Nephroselmiis; Phylogeny Strain(s): 935, 1414, 1417, 1418, 2864, 2865, 2866, 2867 PubMed: 23979010 DOI: 10.1007/s10265-013-0591-1 |
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Yamaguchi, H., Nakayama, T., Murakami, A., Inouye, I.
2010
Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte.
J. Plant Res.,
123,
333-342.
Keywords: Chlorinimonas sublosa gen. et sp. nov.; Phylogeny; Raphidophyceae; Taxonomy; Ultrastructure Strain(s): 558, 1380, 1808, 1809 PubMed: 19946727 DOI: 10.1007/s10265-009-0281-1 |
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Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M.
2016
Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays.
GenomeA,
4,
e00736-16 (article ID).
Strain(s): 981 PubMed: 27469961 DOI: 10.1128/genomeA.00736-16 |
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Yamaguchi, H., Suda, S., Nakayama, T., Pienaar, RN., Chihara, M., Inouye, I.
2011
Taxonomy of Nephroselmis viridis sp. nov. (Nephroselmidophyceae, Chlorophyta), a sister marine species to freshwater N. olivacea.
J. Plant Res.,
124,
49-62.
Keywords: 18S rDNA; Intron; Nephroselmis viridis; Phylogeny; Prasinophyceae; Ultrastructure Strain(s): 486 PubMed: 20499263 DOI: 10.1007/s10265-010-0349-y |
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Yamaguchi, H., Sumida, N., Matsukawa, K., Adachi, M., Tomaru, Y., Ishikawa, K., Hotta, J.
2023
Establishment of a simple method for cryopreservation of the marine diatoms, Chaetoceros and Phaeodactylum.
J. Appl. Phycol.,
33,
2285–2293.
Keywords: CELLBANKER; Cryopreservation; Marine diatoms; Chaetoceros tenuissimus; Phaeodactylum tricornutum; Transgenic diatom Strain(s): 324, 3714, 3715 DOI: 10.1007/s10811-023-03040-w |
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Yamaguchi, H., Suzuki, S., Kawachi, M.
2018
Draft genome sequence of Microcystis aeruginosa NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan.
GenomeA,
6,
e01596-17 (article ID).
Strain(s): 87 PubMed: 29472345 DOI: 10.1128/genomeA.01596-17 |
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Yamaguchi, H., Suzuki, S., Kawachi, M.
2020
Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan.
Microbiol. Resour. Ann..,
9,
e00052-20 (article ID).
Strain(s): 3787, 3804, 3806, 3807 PubMed: 32241856 DOI: 10.1128/MRA.00052-20 |
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Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M.
2018
Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa.
J. Genomics,
6,
30-33.
Keywords: algal bloom; cyanobacteria; genome; Microcystis Strain(s): 2481 PubMed: 29576807 DOI: 10.7150/jgen.24935 |
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Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M.
2020
Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102.
J. Genomics,
8,
1-6.
Keywords: algal bloom; cyanobacteria; genome; microcystin; Microcystis aeruginosa; Lake Kasumigaura Strain(s): 102 PubMed: 31892993 DOI: 10.7150/jgen.40978 |
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Yamaguchi, H., Suzuki, S., Sano, T., Tanabe, Y., Nakajima, N., Kawachi, M.
2016
Draft genome sequence of Microcystis aeruginosa NIES-98, a non-microcystin-producing cyanobacterium from Lake Kasumigaura, Japan.
GenomeA,
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Yamaguchi, K., Murakami, M., Okino, T.
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J. Appl. Phycol.,
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Keywords: angiotensin converting enzyme; inhibitor; microalgae; peptide; screening Strain(s): 14, 100, 102, 104, 114 |
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Yamaguchi, M., Ogawa, T., Muramoto, K., Kamio, Y., Jimbo, M., Kamiya, H.
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Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis.
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Application of regularized alternating least squares and independent component analysis to HPLC-DAD data of Haematococcus pluvialis metabolites.
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Initial ecological risk assessment of eight selected human pharmaceuticals in Japan.
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Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Matsuzaki, R., Takahashi, F., Nishimura, Y., Kawachi, M., Noguchi, H., Minakuchi, YY., Umen, J. G., Toyoda, A., Nozaki, H.
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Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids.
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Evolutionary relationships among multiple modes of cell division in the genus Nannochloris (Chlorophyta) revealed by genome size, actin gene multiplicity, and phylogeny.
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Keywords: 18S rRNA; actin gene; autosporulation; binary fission; budding; Chlorella; Chlorophyta; molecular phylogeny; TBR, tree bisection reconnection Strain(s): 2160, 2169, 2173, 2186, 4016 DOI: 10.1046/j.1529-8817.2003.02052. |
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Plant Cell Physiol.,
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Strain(s): 19 |
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Yamamoto, Y.
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Plant Cell Physiol.,
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Strain(s): 19 |
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Yamamoto, Y.
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J. Gen. Appl. Microbiol.,
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Detection of algal lysing biological agents in lakes by the soft-agar overlayer technique.
Jpn. J. Limnol,
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Strain(s): 19 |
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Yamamoto, Y.
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Observation on the occurrence of microbial agents which cause lysis of blue-green algae in Lake Kasumigaura.
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Yamamoto, Y. & Suzuki, K.
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Distribution and algal-lysing activity of fruiting myxobacteria in Lake Suwa.
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Yamamoto, Y., Shiah, FK.
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Effect of sonication on live and fixed cells of Microcystis aeruginosa.
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Pyrolytic Generation of Petroleum Crude Oils from the Marine Phytomicroalgal Coccolithophore Emiliania huxleyi (Haptophyta) and Preparation of n-Alkane-Rich Biofuel.
Energy Fuels,
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Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68 ºC enhances generarion of n-alkane-rich biofules after pyrolysis.
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Yamano, T., Miura, K., Fukuzawa, H.
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Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo.
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Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition Strain(s): 10, 324 DOI: 10.3354/meps339083 |
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Yamasaki, Y., Nagasoe, S., Tameishi, M., Shikata, T., Zou, Y., Jiang, Z., Matsubara, T., Shimasaki, Y., Yamaguchi, K., Oshima, Y., Honjo, T.
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The role of interactions between Prorocentrum minimum and Heterosigma akashiwo in bloom formation.
Hydrobiologia,
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Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum Strain(s): 1, 10, 324 DOI: 10.1007/s10750-009-0052-y |
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Yamasaki, Y., Ohmichi, Y., Hirose, M., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T.
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Low molecular weight allelochemicals produced by the diatom, Skeletonema costatum.
Thalassas,
28,
9-17.
Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum Strain(s): 10, 324 |
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Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T.
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Species-specific allelopathic effects of the diatom Skeletonema costatum.
Thalassas,
27,
21-32.
Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect Strain(s): 10, 324 |
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Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T.
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Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community.
ISME J.,
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Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum Strain(s): 10, 324 PubMed: 19322242 DOI: 10.1038/ismej.2009.24 |
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Effects of antibacterial agents, levofloxacin and clarithromycin, on aquatic organisms.
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Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae.
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Alternative evolution of a spheroidal colony in volvocine algae: developmental analysis of embryogenesis in Astrephomene (Volvocales, Chlorophyta).
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Yamashita, S., Yamamoto, K., Matsuzaki, R., Shigekatsu, S., Yamaguchi, H., Hirooka, S., Minakuchi, Y., Miyagishima, S., Masanobu, M., Atsushi, T., Hisayoshi, N.
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Genome sequencing of the multicellular alga Astrephomene provides insights into convergent evolution of germ-soma differentiation.
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Preculture of noxious red tide flagellate Chattonella antiqua (Raphidophyceae) for AGP assay.
Bull. Nagasaki Pref. Inst. Fish.,
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Strain(s): 1 |
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Localization and evolution of septins in algae.
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Independent regulation of the lipid and starch synthesis pathways by sulfate metabolites in the green microalga Parachlorella kessleri under sulfur starvation conditions.
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Yamazaki, T., Yamamoto, M., Sakamoto, W., Kawano, S.
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Isolation and molecular characterization of rbcS the unicellular green alga Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae).
Phycol. Res.,
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Keywords: intron sliding; exon/intron structure; gene duplication; gene transfer; rbcS; ribulose-1, 5-bisphosphate carboxyase/oxygenase (Rubisco) Strain(s): 4016 DOI: 10.1111/j.1440-183.2005.00374.x |
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Use of FM1-43, a membrane-specific fluorescent dye, to estimate plasma membrane integrity in the cryopreservation of green algae.
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Mechanisms for outbreak of Heterosigma akashiwo red tide in Osaka Bay, Japan. Part 1. Nutrient factors involved in controlling the growth of Heterosigma akashiwo Hada.
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An assay system for detecting the effects of weed killers, by using the green microalga Scenedesmus quadricauda [Bisyô ryokusô Scenedesmus quadricauda wo mochiita josôzai no eikyôhyôkahô nitsuite].
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Strain(s): 96 |
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Metagenomic and metatranscriptomic insights into population diversity of Microcystis blooms: Spatial and temporal dynamics of mcy genotypes, including a partial operon that can be abundant and expressed.
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Rickettsial endosymbiont in the “early‐diverging” streptophyte green alga Mesostigma viride.
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Dissolved organic matter, calcium ion and extracellular polymeric substances on living associated bacteria of Microcystis colony are crucial for unicellular Microcystis to efficiently form colonies.
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Supermatrix data highlight the phylogenetic relationships of photosynthetic Stramenopiles.
Protist,
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Carbonic anhydrase of Chlamydomonas: Pulification and studies on its induction using antiserum against Chlamydomonas carbonic anhydrase.
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Keywords: affinity chromatography; carbon dioxide concentration; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction Strain(s): 2235 DOI: 10.1093/oxfordjournals.pcp.a076892 |
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An extended phylogenetic analysis reveals ancient origin of “non-green" phosphoribulokinase genes from two lineages of "green” secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta.
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Protein phosphatase ihnibition assay for detection of microcystins in lake water and Microcystis cultures.
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Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defence of a phytoplankton - Part 2.
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Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configuration Strain(s): 802 DOI: 10.1248/cpb.56.129 |
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Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defense of a phytoplankton.
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Aliphatic sulfates released from Daphnia induce morphologiral defense of phytoplankton: isolation and synthesis of kairomones.
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Toxin of the marine micro-algae [Kaiyô bisaisôrui no Tokishin].
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Yubuki, N., Huang, S. S. C., Leander, B. S.
2016
Comparative Ultrastructure of Fornicate Excavates, Including a Novel Free-living Relative of Diplomonads: Aduncisulcus paluster gen. et sp. nov.
Protist,
167,
584-596.
Keywords: Culturing; cytoskel; etonevolution; flagellar apparatus; morphology; ultrastructure Strain(s): 4563 PubMed: 27816016 DOI: 10.1016/j.protis.2016.10.001 |
|
Yubuki, N., Inagaki, Y., Nakayama, T., Inouye, I.
2007
Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n.gen., n.sp., a new member of the Fornicata.
J. Eucaryot. Microbiol.,
54,
191-200.
Keywords: amitochondriate; Carpediemonas membranifera; diplomonads; Excavata; microaerophilic; retortamonads; typical excavates Strain(s): 1843 DOI: 10.1111/j.1550-7408.2007.00252.x |
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Yubuki, N., Nakayama, T., Inouye, I.
2008
A unique life cycle and perennation in a colorless chrysophyte Spumella sp.
J. Phycol.,
44,
164-172.
Keywords: cannibalism; Chrysophyceae; colorless chrysophyte; doubling time; growth rate; heterotrophic flagellate Strain(s): 1846 PubMed: 27041053 DOI: 10.1111/j.1529-8817.2007.00441.x |
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Yubuki, N., Simpson, A. G. B., Leander, B.
2013
Comprehensive ultrastructure of Kipferlia bialata provides evidence for character evolution within the Fornicata (Excavata).
Protist,
164,
423-439.
Keywords: Carpediemonas-like organisms; cell division; cytoskeleton; flagellar apparatus; microtubules; ultrastructure Strain(s): 1968 PubMed: 23517666 DOI: 10.1016/j.protis.2013.02.002 |
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Yuki, Y., Yoshida, T., Hiroishi, S.
2002
Molecular detection of the toxic cyanobacteria [Yûdoku aoko no bunshi-shikibetsu to yosatsu he-no ôyô].
In Series of Fisheries Science Vol. 143, Prevention and Extermination Strategies of Harmful Algal Blooms [Suisan-gaku shirîzu 134, Yûgai-yûdoku sôrui burûmu no yobô to kujo] , Eds. by Hiroishi, S., Imai, I. & Ishimaru, T., Koseisha-Koseikaku, Tokyo,
pp. 43-53 (in Japanese).
Strain(s): 73, 81, 87, 88, 89, 90, 91, 98, 99, 100, 101, 102, 104, 105, 106, 108, 109, 110, 111, 112, 204, 230, 298, 299, 604 |
|
Yuki-jirushi [Snow Brand] Milk Products Co.Ltd., Showa Denko K.K.
1992
Separation and purification of useful substances from Euglena [Euglena kara no yûyô-busshitsu no Bunri Seisei].
In The Advanced Technology of the Separation and Purification of the Materials for Physiologically Functional Foods and Their Development [Kinôsei Shokuhin Sozai no Kôdo Bunri Seisei to Kaihatsu], Ed. and published by The Japanese Research and Development Association for the High Separation System in Food Industry [Shokuhin Sangyô Hai-separêshon Sisutemu Gijutu Kenkyû Kumiai], Tokyo,
pp. 363-382 (in Japanese).
Strain(s): 48 |
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Yumoto, K., Kasai, F., Kawachi, M.
2013
Taxonomic re-examination of Chlamydomonas strains maintained in the NIES-Collection.
Microbiol. Cult. Coll.,
29,
1-12.
Strain(s): 158, 437, 438, 440, 884, 968, 1021, 1022, 1048, 1733, 1848, 1849, 2201, 2202, 2203, 2204, 2206, 2207, 2208, 2209, 2210, 2211, 2212, 2213, 2214, 2215, 2216, 2218, 2219, 2220, 2222, 2223, 2224, 2225, 2228, 2229, 2230, 2231, 2233, 2234, 2235, 2236, 2237, 2238, 2239, 2240, 2241, 2242, 2243, 2246, 2247, 2248, 2314, 2315, 2316, 2317, 2318, 2319, 2320, 2321, 2322, 2323, 2324, 2462, 2463, 2499, 2575, 2576, 2577, 2578, 2579, 3284 |
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Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T.
2016
Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata.
J. Jpn. Soc. Wat. Environ.,
3,
63-70 (in Japanese with English summary).
Keywords: Green algar; EC50; Toxicity test; Antibacterial substance; Combined toxicity Strain(s): 35 DOI: 10.2965/jswe.39.63 |
|
Yamashita, N., Tanaka, H., Miyajima, K., Suzuki, Y.
2006
Evaluation of effect of seaage effluent on river water quality using AGP and algal growth inhibition tests.
J. JSCE,
62,
191-200 (in Japanese with English summary).
Keywords: AGP test; algal growth inhibition test; sewage effluent; Tama River Strain(s): 35 DOI: 10.2208/jscejg.62.191 |
|
Yamashita, N., Fukunaga, A., Tanaka, H.
2017
Examination of microplate AGP test using green algae, diatom and blue-green algae and water quality evaluation of river water and treated sewage effluent by AGP test.
Environmental science,
30,
250-260 (in Japanese with English summary).
Keywords: Algal growth potential; mircoplate; bioassay; eutrophication; water quality evaluation Strain(s): 35, 90, 805 DOI: 10.11353/sesj.30.250 |
|
Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M.
2004
Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton.
Nippon Suisan Gakkaishi,
70,
123-130 (in Japanese with English summary).
Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase Strain(s): 5, 324 DOI: 10.2331/suisan.70.123 |
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Yamasaki, Y., Kameo, S., Wada, Y., Kitatsuji, S., Yuasa, K., Shikata, T.
2023
Toxicological risk assessment of harmful algal species using the rotifer exposure test.
Bull. Plankton Soc. Japan,
70,
52-61 (in Japanese with English summary).
Keywords: Brachionus plicatilis; Dinophyceae; harmful algal bloom species; lethal effect on rotifers; Raphidophyceae Strain(s): 1, 324 DOI: 10.24763/bpsj.70.2_52 |
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Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T.
2016
Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples.
Sessile Organisms,
33,
38-43 (in Japanese with English summary).
Keywords: Residual chlorine; DPD; Seawater; Coscinodiscus wailesii Strain(s): 1, 5, 237, 323 DOI: 10.4282/sosj.33.38 |
|
Yachi, S., Nagai, T., Katsumata, M.
2016
Variation in delayed fluorescence of green algae and diatom during the exposure and a subsequent recovery period.
Jpn. J. Environ. Toxicol.,
19,
35-46 (in Japanese with English summary).
Keywords: Recovery test; Physiological state of algae; 3,5-DCP Strain(s): 35 DOI: 10.11403/jset.19.35 |
|
Yukino, T., Hayashi, M., Inoue, Y., Imamura, J., Nagano, N., Murata, H.
2005
Preparation of docosahexaenoic acid fortified Spirulina platensis and its lipid and fatty acid compositions.
Nippon Suisan Gakkaishi,
71,
74-79 (in Japanese with English summary).
Keywords: docosahexaenoic acid; DHA; Spirulina; foods with function claims Strain(s): 39 DOI: 10.2331/suisan.71.74 |
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