Search Reference

Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa. Fish. Sci., 78, 375-379.
Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ
Strain(s): 298 
DOI: 10.1007/s12562-011-0442-8
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol., 78, 5353-5360.
Strain(s): 87102298 
PubMed: 22636003
DOI: 10.1128/AEM.00626-12
Yabuki, A., Ishida, K-I. 2011 Mataza hastifera n. g., n. sp.: a possible new lineage in the Thecofilosea (Cercozoa). J. Eucaryot. Microbiol., 58, 94-102.
Keywords: Cryomonadida; Cryothecomonas; environmental sequence; extrusome; phylogeny; Protaspis; taxonomy; ultrastructure
Strain(s): 2568 
DOI: 10.1111/j.1550-7408.2010.00524.x
Yabuki, A., Nakayama, T., Yubuki, N., Hashimoto, T., Ishida, K-I. Inagaki, Y. 2011 Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba". J. Eucaryot. Microbiol., 58, 319-331.
Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure
Strain(s): 1390 
PubMed: 21569159
DOI: 10.1111/j.1550-7408.2011.00552.x
Yagawa, Y., Aizawa, K., Yang, S.-Y., Miyachi, S. 1986 Release of carbonic anhydrase from the cell surface of Chlamydomonas reinhardtii by trypsin. Plant Cell Physiol., 27, 215-221.
Keywords: carbonic anhydrase; cell surface; Chlamydomonas reinhardtii; trypsin treatment
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077093
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. I. Purification and properties of the enzyme. Plant Cell Physiol., 28, 1253-1262.
Keywords: carbonic anhydrase; chloride ion-activation; Porphyridium cruentum
Strain(s): 2138 
DOI: 10.1093/oxfordjournals.pcp.a077413
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. II. Distribution and role in photosynthesis. Plant Cell Physiol., 28, 1509-1516.
Keywords: anti-Porphyridium carbonic anhydrase antibody; carbonic anhydrase; immunogold electron microscopy; intracellular distribution; Porphyridium cruentum
Strain(s): 2138 
DOI: 10.1093/oxfordjournals.pcp.a077445
Yagawa, Y., Muto, S., Miyachi, S. 1988 Carbonic anhydrase of Chlamydomonas reinhardtii. Cellular distribution and subunit constitution in two strains. Plant Cell Physiol., 29, 185-188.
Keywords: carbonic anhydrase (cellular distribution); Chlamydomonas
Strain(s): 2235 
Yagawa, Y., Shiraiwa, Y., Miyachi, S. 1984 Carbonic anhydrase from the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 25, 775-783.
Keywords: Anabaena variabilis; blue-green alga; carbonic anhydrase (EC4.2.1.1); cyanobacterium; enzyme purification
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076772
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1984 Growth characteristics of axenic and unialgal Microcystis isolated from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 496-503 (in Japanese with English summary).
Keywords: Microcystis; bacteria; growth; axenic; algae
Strain(s): 478604 
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1987 Limiting nutrients of algal growth in Lake Kasumigaura. Jpn. J. Water Poll. Res., 10, 115-122 (in Japanese with English summary).
Keywords: Microcystis; blue-green algae; nutrients; algal growth potential
Strain(s): 35478 
Yagi, O., Ohkubo, N., Tomioka, N., Okada, M. 1989 Limiting nutrients of algal growth in Ushiku Marsh. Jpn. J. Limnol., 50, 139-148 (in Japanese with English summary).
Keywords: algal growth potential; Microcystis; Selenastrum; nutrient
Strain(s): 35478 
Yagi, O., Sudo, R., Imaoka, T., Teranishi, S. 1984 Algal growth potential on munisipal wastewater using red tide organisms. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 231-242 (in Japanese with English summary).
Strain(s): 35 
Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T. 2009 Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae. Plant J., 60, 882-893.
Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS)
Strain(s): 3377 
PubMed: 19709388
DOI: 10.1111/j.1365-313X.2009.04008.x
Yalikun, Y., Ota, N., Guo, B., Tang, T., Zhou, Y., Lei, C., Kobayashi, H., Hosokawa, Y., Li, M., Enrique Muñoz, H., Di Carlo, D., Goda, K., Tanaka Y. 2020 Effects of flow-induced microfluidic chip wall deformation on imaging flow cytometry. Cytom. Part A, 97, 909-920.
Keywords: glass microchannel; high-speed imaging flow cytometry; microchannel deformation effects; sample focusing
Strain(s): 48 
PubMed: 31856398
DOI: 10.1002/cyto.a.23944
Yamada, E., Hirota, T., Hatori, N., Kitao, Y., Fuse, Y., Aoki, S., Karatani, H., Matsunaga, T. 2012 Characterization of protein-like fluorophores released from lake phytoplankton on the basis of fractionation and electrophoresis. Anal. Sci., 28, 595-600.
Strain(s): 109275665 
PubMed: 22729046
DOI: 10.2116/analsci.28.595
Yamada, E., Ohara, S., Uehara, T., Hirota, T., Hatori, N., Fuse, Y., Aoki, S. 2012 Biodegradation of dissolved organic matter (DOM) released from phytoplankton in Lake Biwa. Anal. Sci., 28, 675-681.
Strain(s): 109275665 
PubMed: 22790369
DOI: 10.2116/analsci.28.675
Yamada, E., Sasai, K., Higa, R., Mizuguchi, H., Fuse Y. 2020 Characterization and dynamic analysis of dissolved proteins in Lake Biwa using two-dimensional electrophoresis. Anal. Sci., 36, 753-759.
Strain(s): 109275391665 
PubMed: 31956160
DOI: 10.2116/analsci.19P450
Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y. 2018 Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers. J. Environ. Safety, 9, 23-32.
Keywords: photoirradiation; wavelength cut filter; photodegradation; dissolved organic matter; fulvic-like fluorophore; protein-like fluorophore; environmental waters
Strain(s): 109275665 
DOI: 10.11162/daikankyo.E17RP1101
Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S. 2019 Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). J. Phycol., 55, 196-203.
Keywords: annulus; diatom; pattern center; scale; sternum
Strain(s): 2565 
PubMed: 30320892
DOI: 10.1111/jpy.12800
Yamada, K., Moriyama, R., Hatano, S. 1987 Production of osmotically labile cells in Chlorella ellipsoidea C-27 and C-102 by enzyme treatment. Agric. Biol. Chem., 51, 579-580.
Strain(s): 2170 
DOI: 10.1080/00021369.1987.10868044
Yamada, K., Yoshikawa, S., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K. 2014 Effects of silicon-limitation on growth and morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta). PLoS One, 9, e103289 (article ID).
Strain(s): 2565 
PubMed: 25054645
DOI: 10.1371/journal.pone.0103289
Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J. 2010 Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan. J. Oceanogr., 66, 755-771.
Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM
Strain(s): 2837283828392841284228432844 
DOI: 10.1007/s10872-010-0062-4
Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M. 2017 Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema. Phycol. Res., 65, 217-225.
Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA
Strain(s): 16223283728382842 
DOI: 10.1111/pre.12179
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1985 Studies on earthy-musty odor in natural water (1). Growth characteristics and 2-methylisoborneol production of Phormidium tenue. Jpn. J. Water Poll. Res., 8, 515-521 (in Japanese with English summary).
Keywords: blue-green algae; Phormidium tenue; growth characteristics; headspace-GC analysis; 2-methylisoborneol
Strain(s): 512 
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1986 Studies on earthy-musty odor in natural water (3). Isolation of bacteria-free Phormidium tenue and the effect of associated bacteria on the growth of axenic P. tenue. Jpn. J. Water Poll. Res., 9, 379-385 (in Japanese with English summary).
Keywords: Phormidium tenue; axenic; growth; 2-methylisoborneol; bacteria interaction
Strain(s): 512 
Yamada, T. K., Miyaji, K., Nozaki, H. 2008 A taxonomic study of Eudorina unicocca (Volvocaceae, Chlorophyceae) and related species, based on morphology and molecular phylogeny. Eur. J. Phycol., 43, 317-326.
Keywords: aplanosporic strain; Eudorina unicocca; Eudorina peripheralis stat. nov.; Chlorophyceae; molecular phylogeny; morphology; taxonomy; Volvocales; Yamagishiella
Strain(s): 5786667177227237247257268708721855185618571858185918601861 
DOI: 10.1080/09670260701763484
Yamada, T. K., Tsuchikane, Y., Wu, J.-T., Sekimoto, H., Miyaji, K., Nozaki, H. 2008 Morphology and molecular phylogeny of Eudorina sp. (Volvocaceae, Chlorophyceae) from Taiwan. Hikobia, 15, 135-143.
Keywords: Eudorina elegans; Eudorina minodii; Eudorina unicocca; Eudorina peripheralis; Chlorophyceae; molecular phylogeny; morpholohy; taxsonomy; Volvocales
Strain(s): 724725726185827342735 
Yamada, T., Nakada, T., Miyaji, K., Nozaki, H. 2006 Morphology and molecular phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) newly found in Japan. J. Jpn. Bot., 81, 139-147.
Keywords: Chlorophyceae; Gonium multicoccum; ITS2; rbcL; Volvocales
Strain(s): 289569572653654851857103817071708170917111713 
Yamada, T., Sakaguchi, K. 1981 Protoplast induction in Chlorella species. Agric. Biol. Chem., 45, 1905-1909.
Strain(s): 6852160216521702189 
DOI: 10.1271/bbb1961.45.1905
Yamada, T., Sakaguchi, K. 1982 Comparative studies on Chlorella cell walls: Induction of protoplast formation. Arch. Mikrobiol., 132, 10-13.
Strain(s): 2276862159216321662168217121892352 
DOI: 10.1007/BF00690809
Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID).
Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle
Strain(s): 3715 
DOI: 10.3389/fmars.2018.00167
Yamagishi, T., Fuchida, S., Katsumata, M., Horie, Y., Mori, F., Kitayama, A., Kawachi, M., Koshikawa, H., Nozaki, T., Kumagai, H., Ishibashi, J-I., Tatarazako, N. 2018 Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981. Ecotoxicology, 27, 1303–1309.
Keywords: Cyanobium sp.; Deep-sea mining; Delayed fluorescence; Ecotoxicological bioassay; Heavy metal
Strain(s): 981 
PubMed: 30311132
DOI: 10.1007/s10646-018-1989-2
Yamagishi, T., Horie, Y., Tatarazako, N. 2017 Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata. Chemosphere, 174, 1-7.
Keywords: Azole fungicide; Clarithromycin; Erythromycin; Isobologram; Ketoconazole; Pseudokirchneriella subcapitata
Strain(s): 35 
PubMed: 28152378
DOI: 10.1016/j.chemosphere.2017.01.071
Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N. 2016 Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981). Ecotoxicology, 25, 1751-1758.
Keywords: Algal growth inhibition test; Cyanobium sp.; Delayed fluorescence; Marine cyanobacteria
Strain(s): 981 
PubMed: 27633095
DOI: 10.1007/s10646-016-1718-7
Yamagishi, T., Kawai, H. 2012 Cytoskeleton organization during the cell cycle in two stramenopile microalgae, Ochromonas danica (Chrysophyceae) and Heterosigma akashiwo (Raphidophyceae), with special reference to F-actin organization and its role in cytokinesis. Protist, 163, 686-700.
Keywords: Cytokinesis; F-actin; Heterosigma; microtubule; Ochromonas; phalloidin; stramenopiles
Strain(s): 6 
PubMed: 22104586
DOI: 10.1016/j.protis.2011.09.003
Yamagishi, T., Kurihara, A., Kawai, H. 2015 A ribbon-like structure in the ejective organelle of the green microalga Pyramimonas parkeae (Prasinophyceae) consists of core histones and polymers containing N-acetyl-glucosamine. Protist, 166, 522-533.
Keywords: Core histone; ejectisome; N-acetyl-glucosamine; Pyramimonas parkeae
Strain(s): 251254 
PubMed: 26398336
DOI: 10.1016/j.protis.2015.08.003
Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M. 2019 Ecotoxicological bioassay using marine algae for deep-sea mining. In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham, pp. 255-271.
Strain(s): 323613969971981100010011310141123042587259026702672 
DOI: 10.1007/978-3-030-12696-4_10
Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017 Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP. PLoS One, 12, e0171259 (article ID).
Strain(s): 35 
PubMed: 28152022
DOI: 10.1371/journal.pone.0171259
Yamagishi, T., Yamaguchi, H., Suzuki, S., Yoshikawa, M., Jameson, I., Lorenz, M., Nobles, D. R., Campbell, C., Seki, M., Kawachi, M., Yamamoto, H. 2020 Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide. PLoS One, 15, e0241889 (article ID).
Strain(s): 35 
PubMed: 33166324
DOI: 10.1371/journal.pone.0241889
Yamaguchi, H., Arisaka, H., Otsuka, N., Tomaru, Y. 2014 Utilization of phosphate diesters by phosphodiesterase-producing marine diatoms. J. Plankton Res., 36, 281-285.
Keywords: marine diatoms; phosphate diester; phosphodiesterase; phosphorus
Strain(s): 6 
DOI: 10.1093/plankt/fbt091
Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138.
Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure
Strain(s): 7161870 
DOI: 10.1111/j.1440-1835.2008.00493.x
Yamaguchi, H., Nakayama, T., Hongoh, Y., Kawachi, M., Inouye, I. 2014 Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota). J. Plant Res., 127, 241-247.
Keywords: 18S rRNA gene; 16S rRNA gene; Symbiosis; Hatena arenicola; Nephroselmiis; Phylogeny
Strain(s): 9351414141714182864286528662867 
PubMed: 23979010
DOI: 10.1007/s10265-013-0591-1
Yamaguchi, H., Nakayama, T., Murakami, A., Inouye, I. 2010 Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. J. Plant Res., 123, 333-342.
Keywords: Chlorinimonas sublosa gen. et sp. nov.; Phylogeny; Raphidophyceae; Taxonomy; Ultrastructure
Strain(s): 558138018081809 
PubMed: 19946727
DOI: 10.1007/s10265-009-0281-1
Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID).
Strain(s): 981 
PubMed: 27469961
DOI: 10.1128/genomeA.00736-16
Yamaguchi, H., Suda, S., Nakayama, T., Pienaar, RN., Chihara, M., Inouye, I. 2011 Taxonomy of Nephroselmis viridis sp. nov. (Nephroselmidophyceae, Chlorophyta), a sister marine species to freshwater N. olivacea. J. Plant Res., 124, 49-62.
Keywords: 18S rDNA; Intron; Nephroselmis viridis; Phylogeny; Prasinophyceae; Ultrastructure
Strain(s): 486 
PubMed: 20499263
DOI: 10.1007/s10265-010-0349-y
Yamaguchi, H., Suzuki, S., Kawachi, M. 2018 Draft genome sequence of Microcystis aeruginosa NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 6, e01596-17 (article ID).
Strain(s): 87 
PubMed: 29472345
DOI: 10.1128/genomeA.01596-17
Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol Resour Announc., 9, e00052-20 (article ID).
Strain(s): 3787380438063807 
PubMed: 32241856
DOI: 10.1128/MRA.00052-20
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2018 Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. J. Genomics, 6, 30-33.
Keywords: algal bloom; cyanobacteria; genome; Microcystis
Strain(s): 2481 
PubMed: 29576807
DOI: 10.7150/jgen.24935
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2020 Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102. J. Genomics, 8, 1-6.
Keywords: algal bloom; cyanobacteria; genome; microcystin; Microcystis aeruginosa; Lake Kasumigaura
Strain(s): 102 
PubMed: 31892993
DOI: 10.7150/jgen.40978
Yamaguchi, H., Suzuki, S., Sano, T., Tanabe, Y., Nakajima, N., Kawachi, M. 2016 Draft genome sequence of Microcystis aeruginosa NIES-98, a non-microcystin-producing cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 4, e01187-16 (article ID).
Strain(s): 98 
PubMed: 27834696
DOI: 10.1128/genomeA.01187-16
Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID).
Strain(s): 2549 
PubMed: 26021928
DOI: 10.1128/genomeA.00551-15
Yamaguchi, K., Murakami, M., Okino, T. 1989 Screening of angiotensin-converting enzyme inhibitory activities in microalgae. J. Appl. Phycol., 1, 271-275.
Keywords: angiotensin converting enzyme; inhibitor; microalgae; peptide; screening
Strain(s): 14100102104114 
Yamaguchi, M., Ogawa, T., Muramoto, K., Kamio, Y., Jimbo, M., Kamiya, H. 1999 Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis. Biochem. Biophys. Res. Commun., 265, 703-708.
Keywords: Microcystis viridis; lectin; cyanobacterium; mannan-binding lectin; blue-green algae; hemaggulutinin
Strain(s): 102 
DOI: 10.1006/bbrc.1999.1749
Yamaguchi, T., Kobayashi, Y., Adachi, K., Imamura, N. 2003 Argimicins B and C, new anti-cyanobacterial compounds produced by Sphingomonas sp. M-17. J. Antibiot., 56, 655-657.
Strain(s): 4581102230298592 
PubMed: 14513910
DOI: 10.7164/antibiotics.56.655
Yamaki, H., Sitachitta, N., Sano, T., Kaya, K. 2005 Two new chymotrypsin inhibitors isolated from the cyanobacterium Microcystis aeruginosa NIES-88. J. Nat. Prod., 68, 14-18.
Strain(s): 88 
PubMed: 15679310
DOI: 10.1021/np0401361
Yamamoto, H., Hada, K., Yamaji, H., Katsuda, T., Ohno, H., Fukuda, H. 2006 Application of regularized alternating least squares and independent component analysis to HPLC-DAD data of Haematococcus pluvialis metabolites. Biochem. Eng. J., 32, 149-156.
Keywords: metabolomics; chemometrics; HPLC-DAD; alternating least squares; regularized term; independent component analysis
Strain(s): 144 
DOI: 10.1016/j.bej.2006.09.014
Yamamoto, H., Nakamura, Y., Nakamura, Y., Kitani, C., Imari, T., Sekizawa, J., Takao, Y., Yamashita, N., Hirai, N., Oda, S., Takarazako, N. 2007 Initial ecological risk assessment of eight selected human pharmaceuticals in Japan. Environ. Sci., 14, 177-193.
Keywords: pharmaceuticals; initial risk assessment; aquatic organisms; predicted no effect concentration
Strain(s): 35 
PubMed: 17762841
Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Matsuzaki, R., Takahashi, F., Nishimura, Y., Kawachi, M., Noguchi, H., Minakuchi, YY., Umen, J. G., Toyoda, A., Nozaki, H. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).
Keywords: Volvox; evolution; heterothallism; homothallism; sex
Strain(s): 3780378137823783378437853786 
PubMed: 34011609
DOI: 10.1073/pnas.2100712118
Yamamoto, K., Kawai-Toyooka, H., Hamaji, T., Tsuchikane, Y., Mori, T., Takahashi, F., Sekimoto, H., Ferris, P. J., Nozaki, H. 2017 Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids. PLoS One, 12, e0180313 (article ID).
Strain(s): 37803782378337853786398641104111 
PubMed: 28665990
DOI: 10.1371/journal.pone.0180313
Yamamoto, M., Handa, S., Kawachi, M., Miyamura, S., Nagumo, T., Hirata, A., Kawano, S. 2016 Mother cell wall cleavage during filament formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 35-39.
Keywords: Binary fission; Filament formation; Mother cell wall; Stichococcus; Trebouxiophyceae
Strain(s): 3639 
DOI: 10.1508/cytologia.81.35
Yamamoto, M., Nozaki, H., Kawano, S. 2001 Evolutionary relationships among multiple modes of cell division in the genus Nannochloris (Chlorophyta) revealed by genome size, actin gene multiplicity, and phylogeny. J. Phycol., 37, 106-120.
Keywords: actin gene; autosporulation; binary fission; budding; cell division; Chlorophyta; DNA content; genome size; phylogeny; Nannochloris
Strain(s): 21604016 
DOI: 10.1046/j.1529-8817.2001.037001106.x
Yamamoto, M., Nozaki, H., Miyazawa, Y., Koide, T., Kawano, S. 2003 Relationship between presence of a mother cell wall and speciation in the unicellular microalga Nannochloris (Chlorophyta). J. Phycol., 39, 172-184.
Keywords: 18S rRNA; actin gene; autosporulation; binary fission; budding; Chlorella; Chlorophyta; molecular phylogeny; TBR, tree bisection reconnection
Strain(s): 21602169217321864016 
DOI: 10.1046/j.1529-8817.2003.02052.
Yamamoto, Y. 1972 The fatty acid composition of akinetes, heterocysts and vegetative cells in Anabaena cylindrica. Plant Cell Physiol., 13, 913-915.
Strain(s): 19 
Yamamoto, Y. 1975 Effect of desiccation on the germination of akinetes of Anabaena cylindrica. Plant Cell Physiol., 16, 749-752.
Strain(s): 19 
Yamamoto, Y. 1976 Effect of some physical and chemical factors on the germination of akinates of Anabaena cylindrica. J. Gen. Appl. Microbiol., 22, 311-323.
Strain(s): 19 
DOI: 10.2323/jgam.22.311
Yamamoto, Y. 1978 Detection of algal lysing biological agents in lakes by the soft-agar overlayer technique. Jpn. J. Limnol, 39, 9-14 (in Japanese with English summary).
Strain(s): 19 
Yamamoto, Y. 1981 Observation on the occurrence of microbial agents which cause lysis of blue-green algae in Lake Kasumigaura. Jpn. J. Limnol., 42, 20-27.
Strain(s): 19 
Yamamoto, Y., Kawashima, D., Hashizume, A., Hisamotsu, M., Isono, N. 2013 Purification and characterization of 1,3-β-D-glucan phosphorylase from Ochromonas danica. Biosci. Biotechnol. Biochem., 77, 130411-130416.
Keywords: 1,3-β-D-glucan phosphorylase; Ochromonas danica; laminarin; laminarioligosaccharides; 1,3-β-D-glucan
Strain(s): 2142 
PubMed: 24018693
DOI: 10.1271/bbb.130411
Yamamoto, Y., Shiah, F.-K. 2010 Relationship between cell growth and frequency of dividing cells of Microcystis aeruginosa. Plankton Benthos Res., 5, 131-135.
Keywords: frequency of dividing cells; incubation experiment; Microcystis aeruginosa; specific growth rate
Strain(s): 1355 
DOI: 10.3800/pbr.5.131
Yamamoto, Y., Shiah, FK. 2015 Effect of sonication on live and fixed cells of Microcystis aeruginosa. Plankton Benthos Res., 10, 163-166.
Keywords: cell destruction; fixation; Lugol's iodine solution; Microcystis aeruginosa; sonication
Strain(s): 10901157 
DOI: 10.3800/pbr.10.163
Yamamoto, Y., Suzuki, K. 1990 Distribution and algal-lysing activity of fruiting myxobacteria in Lake Suwa. J. Phycol., 26, 457-462.
Keywords: algal-lysing activity; cyanobacteria; fruiting myxobacteria
Strain(s): 19404499102112 
DOI: 10.1111/j.0022-3646.1990.00457.x
Yamane, K., Matsuyama, S., Igarashi, K., Kuwabara, T. 2013 Pyrolytic Generation of Petroleum Crude Oils from the Marine Phytomicroalgal Coccolithophore Emiliania huxleyi (Haptophyta) and Preparation of n-Alkane-Rich Biofuel. Energy Fuels, 27, 7470–7479.
Strain(s): 837 
DOI: 10.1021/ef401618t
Yamane, K., Matsuyama, S., Igarashi, K., Utsumi, M., Shiraiwa, Y., Kuwabara, T. 2013 Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68 ºC enhances generarion of n-alkane-rich biofules after pyrolysis. Appl. Environ. Microbiol., 79, 924-930.
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PubMed: 23183975
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Yamano, T., Fukuzawa, H. 2020 Transformation of the model microalga Chlamydomonas reinhardtii without cell-wall removal. In Electroporation Protocols. Methods in Molecular Biology, Eds. by Li, S., Chang, L., Teissie, J., Humana, New York, NY, 2050, pp. 155-161.
Keywords: Chlamydomonas reinhardtii; Electroporation; Photosynthesis; Protist; Square electric pulse
Strain(s): 2235 
PubMed: 31468489
DOI: 10.1007/978-1-4939-9740-4_16
Yamano, T., Iguchi, H. Fukuzawa, H. 2013 Rapid transformation of Chlamydomonas reinhardtii without cell-wall removal. J. Biosci. Bioeng., 115, 691-694.
Keywords: Chlamydomonas reinhardtii; Electroporation; Square electric pulse; Transformation
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PubMed: 23333644
DOI: 10.1016/j.jbiosc.2012.12.020
Yamano, T., Miura, K., Fukuzawa, H. 2008 Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 147, 340-354.
Strain(s): 2235 
PubMed: 18322145
DOI: 10.1104/pp.107.114652
Yamasaki, Y., Fujita, M., Kawano, S., Baba, T. 2018 Effect of salinity on interspecific competition between the dinoflagellate Alexandrium catenella and the raphidophyte Heterosigma akashiwo. Aquat. Microb. Ecol., 81, 73-82.
Keywords: Allelopathy; Cell contact; Hemolytic activity; Growth inhibition; Heterosigma akashiwo; Alexandrium catenella; Bi-algal culture
Strain(s): 10 
DOI: 10.3354/ame01860
Yamasaki, Y., Nagasoe, S., Matsubara, T., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2007 Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo. Mar. Ecol. Prog. Ser., 339, 83-92.
Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition
Strain(s): 10324 
DOI: 10.3354/meps339083
Yamasaki, Y., Nagasoe, S., Tameishi, M., Shikata, T., Zou, Y., Jiang, Z., Matsubara, T., Shimasaki, Y., Yamaguchi, K., Oshima, Y., Honjo, T. 2010 The role of interactions between Prorocentrum minimum and Heterosigma akashiwo in bloom formation. Hydrobiologia, 641, 33-44.
Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum
Strain(s): 110324 
DOI: 10.1007/s10750-009-0052-y
Yamasaki, Y., Ohmichi, Y., Hirose, M., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2012 Low molecular weight allelochemicals produced by the diatom, Skeletonema costatum. Thalassas, 28, 9-17.
Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum
Strain(s): 10324 
Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T. 2010 Species-specific allelopathic effects of the diatom Skeletonema costatum. Thalassas, 27, 21-32.
Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect
Strain(s): 10324 
Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T. 2009 Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community. ISME J., 3, 808-817.
Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum
Strain(s): 10324 
PubMed: 19322242
DOI: 10.1038/ismej.2009.24
Yamashita, K., Tokunaga, E. 2020 Noninvasive and safe cell viability assay for Paramecium using natural pigment extracted from food. Sci Rep, 10, 10996 (article ID).
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PubMed: 32620770
DOI: 10.1038/s41598-020-67712-0
Yamashita, N., Yasojima, M., Nakada, N., Miyajima, K., Komori, K., Suzuki, Y., Tanaka, H. 2006 Effects of antibacterial agents, levofloxacin and clarithromycin, on aquatic organisms. Water Sci. Technol., 53, 65-72.
Keywords: antibacterial agent; clarithromycin; ecotoxicity; levofloxacin; risk
Strain(s): 35 
PubMed: 16862775
DOI: 10.2166/wst.2006.338
Yamashita, S., Arakaki, Y., Kawai-Toyooka, H., Noga, A., Hirono, M., Nozaki, H. 2016 Alternative evolution of a spheroidal colony in volvocine algae: developmental analysis of embryogenesis in Astrephomene (Volvocales, Chlorophyta). BMC Evol. Biol., 16, 243 (article ID).
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PubMed: 27829356
DOI: 10.1186/s12862-016-0794-x
Yamashita, S., Nozaki, H. 2019 Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae. BMC Evol. Biol., 19, 120 (article ID).
Keywords: Multicellularity; Body plan; Embryogenesis; Volvocine green algae; Gonium; Tetrabaena
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PubMed: 31185890
DOI: 10.1186/s12862-019-1452-x
Yamatogi, T., Miyahara, J., Tanaka, J. 1996 Preculture of noxious red tide flagellate Chattonella antiqua (Raphidophyceae) for AGP assay. Bull. Nagasaki Pref. Inst. Fish., 22, 7-13 (in Japanese with English summary).
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Yamazaki, T., Konosu, E., Takeshita, T., Hireta, A., Ota, S., Kazama, Y., Abe, T., Kawano, S. 2018 Independent regulation of the lipid and starch synthesis pathways by sulfate metabolites in the green microalga Parachlorella kessleri under sulfur starvation conditions. Algal Res., 36, 37-47.
Keywords: Chlorella; Lipids; Starch; Sulfur assimilation; Sulfur starvation
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DOI: 10.1016/j.algal.2018.09.022
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Keywords: FM1-43, cryopreservation, two-step freezing, plasma membrane, green algae, Parachlorella kessleri
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PubMed: 24997835
Yamochi, S. 1983 Mechanisms for outbreak of Heterosigma akashiwo red tide in Osaka Bay, Japan. Part 1. Nutrient factors involved in controlling the growth of Heterosigma akashiwo Hada. J. Oceanogr. Soc. Japan, 39, 310-316.
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DOI: 10.1007/BF02071827
Yanagida, Y. 1992 An assay system for detecting the effects of weed killers, by using the green microalga Scenedesmus quadricauda [Bisyô ryokusô Scenedesmus quadricauda wo mochiita josôzai no eikyôhyôkahô nitsuite]. Report of Freshwater Fisheries Experiment Station Ibaraki Prefecture, No. 28, 124-127 (in Japanese).
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Yang, A., Narechania, A., Kim, E. 2016 Rickettsial endosymbiont in the “early‐diverging” streptophyte green alga Mesostigma viride. J. Phycol., 52, 219-229.
Keywords: endosymbiosis; green algae; Mesostigma ; Rickettsiales; symbiosis; transcriptome
Strain(s): 296475995 
PubMed: 27037587
DOI: 10.1111/jpy.12385
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Keywords: Heterokont algae; molecular phylogenetic analysis; multigene phylogeny; reduced flagellar clade; stramenochromes
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PubMed: 22001261
DOI: 10.1016/j.protis.2011.08.001
Yang, S.-Y., Tsuzuki, M., Miyachi, S. 1985 Carbonic anhydrase of Chlamydomonas: Pulification and studies on its induction using antiserum against Chlamydomonas carbonic anhydrase. Plant Cell Physiol., 26, 25-34.
Keywords: affinity chromatography; carbon dioxide concentration; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a076892
Yang, Y., Maruyama S., Sekimoto, H., Sakayama, H., Nozaki, H. 2011 An extended phylogenetic analysis reveals ancient origin of “non-green" phosphoribulokinase genes from two lineages of "green” secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta. BMC Research Notes, 4, 330 (article ID).
Strain(s): 381 
PubMed: 21899749
DOI: 10.1186/1756-0500-4-330
Yao, Y., Ujiie, Y., Watanabe, M., Yagi, O., Takamura, Y. 1998 Protein phosphatase ihnibition assay for detection of microcystins in lake water and Microcystis cultures. Mircob. Environ., 13, 149-157.
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Yasumoto, K., Nishigami, A., Aoi, H., Tsuchihashi, C., Kasai, F., Kusumi, T., Ooi, T. 2008 Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defence of a phytoplankton - Part 2. Chem. Pharm. Bull., 56, 129-132.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configuration
Strain(s): 802 
DOI: 10.1248/cpb.56.129
Yasumoto, K., Nishigami, A., Aoi, H., Tsuchihashi, C., Kasai, F., Kusumi, T., Ooi, T. 2008 Isolation of new aliphatic sulfates and sulfamate as the Daphnia kairomones inducing morphological change of a phytoplankton Scenedesmus gutwinskii. Chem. Pharm. Bull., 56, 133-136.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; aliphatic sulfamate
Strain(s): 802 
DOI: 10.1248/cpb.56.133
Yasumoto, K., Nishigami, A., Kasai, F., Kusumi, T., Ooi, T. 2006 Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defense of a phytoplankton. Chem. Pharm. Bull., 54, 271-274.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configulation
Strain(s): 802 
DOI: 10.1248/cpb.54.271
Yasumoto, K., Nishigami, A., Yasumoto, M., Kasai, F., Okada, Y., Kusumi, T., Ooi, T. 2005 Aliphatic sulfates released from Daphnia induce morphologiral defense of phytoplankton: isolation and synthesis of kairomones. Tetrahedron Letters , 46, 4765-4767.
Keywords: kairomonda; phytoplankton; Daphnia; Scenedesmus; aliphatic sulfate
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DOI: 10.1016/j.tetlet.2005.05.027
Yasumoto, T. 1992 Toxin of the marine micro-algae [Kaiyô bisaisôrui no Tokishin]. BIO Medica, 7, 57-62 (in Japanese).
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Yeo, B.-S., Chu, W.-L., Wong, C.-Y., Kok, Y.-Y., Phang, S.-M., Tan, B.-K., Mustafa, E. M. 2018 Combined effects of glufosinate ammonium and temperature on the growth, photosynthetic pigment content and oxidative stress response of Chlorella sp. and Pseudokirchneriella subcapitata. J. Appl. Phycol., 30, 3043–3055.
Keywords: Glufosinate ammonium; Temperature; Herbicides; Chlorella; Pseudokirchneriella subcapitata
Strain(s): 35 
DOI: 10.1007/s10811-018-1613-0
Yiu, S. K. F., Zhang, F. F., Au, D. W. T., Ho, K. C., Xu, S. J. 2017 The tolerance of rabbitfish siganus oramin to the ichthyotoxic alga Chattonella marina. J. Marine Biol. Aquacult., 3, 1-4.
Keywords: Chattonella marina; Siganus oramin; Harmful algae; Hypoxia; Rabbitfish
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DOI: 10.15436/2381-0750.17.1612
Yokono, M., Murakami, A., Akimoto, S. 2011 Excitation energy transfer between photosystem II and photosystem I in red algae: larger amounts of phycobilisome enhance spillover. Biochim. Biophys. Acta-Bioenerg., 1807, 847-853.
Keywords: spillover; red algae; delayed fluorescence; phycobilisome; red chlorophyll
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PubMed: 21496452
DOI: 10.1016/j.bbabio.2011.03.014
Yokono, M., Takabayashi, A., Kishimoto, J., Fujita, T., Iwai, M., Murakami, A., Akimoto, S., Tanaka, A. 2019 The PSI-PSII megacomplex in green plants. Plant Cell Physiol., 60, 1098–1108.
Keywords: Energy transfer; Nonphotochemical quenching; Photosystem
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PubMed: 30753722
DOI: 10.1093/pcp/pcz026
Yokota, A., Kitaoka, S. 1986 A method for determination of glyoxylate with pumpkin isocitrate lyase and its application to photosynthesizing Euglena gracilis Z. Plant Sci., 46, 97-101.
Keywords: determination of glyoxylate; pumpkin isocitrate lyase; Euglena gracilis
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DOI: 10.1016/0168-9452(86)90115-9
Yokota, A., Kitaoka, S. 1987 Rates of glycolate synthesis and metabolism during photosynthesis of Euglena and microalgae grown on low CO2. Planta, 170, 181-189.
Keywords: aminooxyacetate; Chlorophyta (microalgae); CO2-concentrating mechanism; cyanobacteria; Euglena; glycolate excretion; photosynthesis (CO2-concentrating mechanism)
Strain(s): 48 
PubMed: 24232876
DOI: 10.1007/BF00397886
Yokota, A., Kitaoka, S. 1987 The mechanism of induction of glycolate excretion by aminooxyacetate in low CO2-grown Euglena gracilis Z. Agric. Biol. Chem., 51, 665-670.
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Yokoyama, A., Scott, J. L., Zuccarello, G. C., Kajikawa, M., Hara, Y., West, J. A. 2009 Corynoplastis japonica gen. et sp. nov. and Dixoniellales ord. nov. (Rhodellophyceae, Rhodophyta) based on morphological and molecular evidence. Phycol. Res., 57, 278-289.
Keywords: chloroplast; Corynoplastis gen. et sp. nov.; Dixoniellales nov. ord.; Golgi; mannitol; Porphyridiales; pyrenoids; Rhodella; Rhodellales; Rhodellophyceae
Strain(s): 2662 
DOI: 10.1111/j.1440-1835.2009.00547.x
Yokoyama, A., Takahashi, F., Kataoka, H., Hara, Y., Nozaki, H. 2011 Evolutionary analysis of the nuclear-encoded photosynthetic gene psbO from tertiary plastid-containing algae in Dinophyta. J. Phycol., 47, 407-414.
Keywords: diatoms; Dinophyta; endosymbiosis; Haptophyta; N-terminal region; phylogeny; plastid; psbO genes
Strain(s): 274712 
PubMed: 27021871
DOI: 10.1111/j.1529-8817.2011.00961.x
Yonamine, Y., Suzuki, Y., Ito, T., Miura, Y., Goda, K., Ozeki, Y., Hoshino, Y. 2017 Monitoring photosynthetic activity in microalgal cells by Raman spectroscopy with deuterium oxide as a tracking probe. ChemBioChem, 18, 2063–2068.
Keywords: Biological activity; Deuterium; Metabolism; Photosynthesis; Raman spectroscopy
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PubMed: 28805994
DOI: 10.1002/cbic.201700314
Yongmanitchai, W., Ward, O. P. 1991 Screening of algae for potential alternative sources of eicosapentaenoic acid. Phytochemistry, 30, 2963-2967.
Keywords: algae; Thailand; w-3 fatty acids; linolenic acid; eicosapentaenoic acid; docosahexaenoic acid
Strain(s): 22562258 
DOI: 10.1016/S0031-9422(00)98231-1
Yoo, J. J., Choi, S. P., Kim, B. W., Sim, S. J. 2012 Optimal design of scalable photo-bioreactor for phototropic culturing of Haematococcus pluvialis. Bioprocess. Biosyst. Eng., 35, 309-315.
Keywords: Photo-bioreactor; Haematococcus pluvialis; Astaxanthin; Improved factors; Mixing
Strain(s): 144 
PubMed: 21909667
DOI: 10.1007/s00449-011-0616-x
Yoo, J. J., Choi, S. P., Kim, J. Y. H., Chang, W. S., Sim, S. J. 2013 Development of thin-film photo-bioreactor and its application to outdoor culture of microalgae. Bioprocess. Biosyst. Eng., 36, 729-736.
Keywords: Photo-bioreactor; Microalgae; Haematococcus pluvialis; Scale-up; Outdoor
Strain(s): 144 
PubMed: 23361185
DOI: 10.1007/s00449-013-0898-2
Yoo, Y.D., Seong, K.A., Kima, H.S., Jeong, H.J., Yoon, E.Y., Park, J., Kim, J.I., Shin, W., Palenik, B. 2018 Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria. Harmful Algae, 73, 98-109.
Keywords: Ecology; Food web; Algal bloom; Mixotrophy; Red tide; Synechococcus
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DOI: 10.1016/j.hal.2018.02.003
Yoshida, C., Murakami, M., Niwa, A., Takeya, M., Osanai, T. 2021 Efficient extraction and preservation of thermotolerant phycocyanins from red alga Cyanidioschyzon merolae. J. Biosci. Bioeng., 131, 161-167.
Keywords: Cyanidioschyzon merolae; Microalgae; Phycocyanin; Protein extraction; Red algae
Strain(s): 3377 
PubMed: 33109478
DOI: 10.1016/j.jbiosc.2020.09.021
Yoshida, M., Noël, M.-H., Nakayama, T., Naganuma, T., Inouye, I. 2006 A haptophyte bearing siliceous scales: ultrastructure and phylogenetic position of Hyalolithus neolepis gen. et sp. nov. (Prymnesiophyceae, Haptophyta). Protist, 157, 213-234.
Keywords: biomineralization; silica; Prymnesium; Chrysochromulina; 18S rDNA; rbcL
Strain(s): 1393 
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Keywords: API ZYM; diversity; microcystin; Microcystis; phylogeny; population; taxonomy; toxic; cyanobacteria
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DOI: 10.1111/j.1365-2672.2008.03754.x
Yoshida, M., Yoshida, T., Takashima, Y., Hosoda, N., Hiroishi, S. 2007 Dynamics of microcystin-producing and non-producing Microcystis populations is correlated with nitrate concentration in a Japanese lake. FEMS Microbiol. Lett., 266, 49-53.
Keywords: microcystin; Microcystis; peptide synthetase; population dynamics; real-time PCR; toxic cyanobacteria
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Keywords: cyanophage; Microcystis aeruginosa; real-time RT-PCR; succession; toxic cyanobacteria
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DOI: 10.1264/jsme2.ME10117
Yoshida, T., Ancajas, R. R. 1970 Application of the acetylene reduction method in nitrogen fixation studies. Soil Sci. & Plant Nutr., 16, 234-237.
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Yoshida, T., Maki, M., Okamoto, H., Hiroishi, S. 2005 Coordination of DNA replication and cell division in cyanobacteria Microcystis aeruginosa. FEMS Microbiol. Lett., 251, 149-154.
Keywords: cyanobacteria; cell division; DNA replication; FtsZ; Microcystis
Strain(s): 298 
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DOI: 10.1016/j.femsle.2005.07.041
Yoshida, T., Nagasaki, K., Takashima, Y., Shirai, Y., Tomaru, Y., Takao, Y., Sakamoto, S., Hiroishi, S., Ogata, H. 2008 Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. J. Bacteriol., 190, 1762-1772.
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Yoshida, T., Nakai, R., Seto, H., Wang, M.-K., Iwataki, M., Hiroishi, S. 2003 Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua. Microbes Environ., 18, 216-222.
Keywords: dinoflagellate; Heterocapsa circularisquama; internal transcribed spacer; ITS; red tide
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Yoshida, T., Sakamoto, T. 2009 Water-stress induced trehalose accumulation and control of trehalase in the cyanobacterium Nostoc punctiforme IAM M-15. J. Gen. Appl. Microbiol., 55, 135-145.
Keywords: compatible solute, desiccation tolerance, post-translational regulation, terrestrial cyanobacterium
Strain(s): 2108 
DOI: 10.2323/jgam.55.135
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2006 Isolation and characterization of a cyanophage infecting the toxic cyanobacterium Microcystis aeruginosa. Appl. Environ. Microbiol., 72, 1239-1247.
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PubMed: 16461672
DOI: 10.1128/AEM.72.2.1239-1247.2006
Yoshida, T., Yuki, Y., Lei, S., Chinen, H., Yoshida, M., Kondo, R., Hiroishi, S. 2003 Quantitative detection of toxic strains of the cyanobacterial genus Microcystis by competitive PCR. Microbes Environ., 18, 16-23.
Keywords: competitive PCR; microcystin; Microcystis; peptide synthetase; toxic cyanobacteria
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Yoshida, Y., Fujiwara, T., Imoto, Y., Yoshida, M., Ohnuma, M., Hirooka, S., Misumi, O., Kuroiwa, H., Kato, S., Matsunaga, S., Kuroiwa, T. 2013 The kinesin-like protein TOP promotes Aurora localisation and induces mitochondrial, chloroplast and nuclear division. J. Cell Sci., 126, 2392-2400.
Keywords: Cell-division cycle, Cyanidioschyzon merolae; Kinesin; Mitochondrial division; Plastid division
Strain(s): 3377 
PubMed: 23549784
DOI: 10.1242/jcs.116798
Yoshida, Y., Imoto, Y., Yagisawa, F. 2018 Isolation of dividing organelles from Cyanidioschyzon merolae cells. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 43-57.
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_4
Yoshida, Y., Kuroiwa, H., Hirooka, S., Fujiwara, T., Ohnuma, M., Yoshida, M., Misumi, O., Kawano, S., Kuroiwa, T. 2009 The bacterial ZapA-like protein ZED is required for mitochondrial division. Curr. Biol., 19, 1491-1497.
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PubMed: 19699094
DOI: 10.1016/j.cub.2009.07.035
Yoshida, Y., Kuroiwa, H., Misumi, O., Yoshida, M., Ohnuma, M., Fujiwara, T., Yagisawa, F., Hirooka, S., Imoto, Y., Matsushita, K., Kawano, S., Kuroiwa, T. 2010 Chloroplasts divide by contraction of a bundle of nanofilaments consisting of polyglucan. Science, 329, 949-953.
Strain(s): 3377 
PubMed: 20724635
DOI: 10.1126/science.1190791
Yoshida, Y., Miyagishima, S.-Y., Kuroiwa H., Kuroiwa, T. 2012 The plastid-dividing machinery: formation, constriction and fission. Curr. Opin. Plant Biol., 15, 714-721.
Strain(s): 3377 
PubMed: 22824141
DOI: 10.1016/j.pbi.2012.07.002
Yoshida-Takashima, Y., Yoshida, M., Ogata, H., Nagasaki, K., Hiroishi, S., Yoshida, T. 2012 Cyanophage infection in the bloom-forming cyanobacteria Microcystis aeruginosa in surface freshwater. Microbes Environ., , 350-355.
Keywords: cyanobacteria; cyanophage; non-bleaching gene (nblA); phycobilisome; Microcystis
Strain(s): 298843 
PubMed: 23047146
DOI: 10.1264/jsme2.ME12037
Yoshii, Y., Takaichi, S., Maoka, T., Hanada, S., Inouye, I. 2002 Characterization of two unique carotenoid fatty acid esters from Pterosperma cristatum (Prasinophyceae, Chlorophyta). J. Phycol., 38, 297-303.
Keywords: antenna pigment; carotenoid; Prasinophyceae; Pterosperma; siphonaxanthin; siphonaxanthin ester
Strain(s): 936 
DOI: 10.1046/j.1529-8817.2002.01116.x
Yoshii, Y., Takaichi, S., Maoka, T., Inouye, I. 2003 Photosynthetic pigment composition in the primitive green alga Mesostigma viride (Prasinophyceae): phylogenetic and evolutionary implications. J. Phycol., 39, 570-576.
Keywords: abscisic acid; carotenoid; Mesostigma; neoxanthin; siphonaxanthin; siphonaxanthin ester
Strain(s): 296475476477 
DOI: 10.1046/j.1529-8817.2003.02098.x
Yoshii, Y., Takaichi, S., Maoka, T., Suda, S., Sekiguchi, H., Nakayama, T., Inouye, I. 2005 Variation of siphonaxanthin series among the genus Nephroselmis (Prasinophyceae, Chlorophyta), including a novel primary methoxy carotenoid. J. Phycol., 41, 827-834.
Keywords: carotenoids; methylation; Nephroselmis; photosynthetic antenna system; Prasinophyceae; siphonaxanthin series
Strain(s): 2524834869349352309 
DOI: 10.1111/j.1529-8817.2005.00103.x
Yoshikawa, K., Aikawa, S., Kojima, Y., Toya, Y., Furusawa, C., Kondo, A., Shimizu, H. 2015 Construction of a genome-scale metabolic model of Arthrospira platensis NIES-39 and metabolic design for cyanobacterial bioproduction. PLoS One, 10, e0144430 (article ID).
Strain(s): 39 
PubMed: 26640947
DOI: 10.1371/journal.pone.0144430
Yoshikawa, S., Suzuki, T., Watanabe, M., Iseki, M. 2005 Kinetic analysis of the activation of photoactivated adenylyl cyclase (PAC), a blue-light receptor for photomovements of Euglena. Photochem. Photobiol. Sci., 4, 727-731.
Strain(s): 48 
Yoshikawa, T., Ikeda, Y., Sakata, T., Maeda, H. 2011 Cloning and analysis of the ggpS gene from cyanobacteria Arthrospira spp. involved in the synthesis of an osmolyte glucosylglycerol. Biocontrol Science, 16, 55-61.
Keywords: Arthrospira; ggpS; Glucosylglycerol; Osmolyte; Synechococcus
Strain(s): 39 
PubMed: 21719990
DOI: 10.4265/bio.16.55
Yoshimatsu, T., Tie, C., Yamaguchi, H., Funaki, H., Honma, C., Tanaka, K., Adachi, M. 2016 The effects of light intensity on the growth of Japanese Gambierdiscus spp. (Dinophyceae). Harmful Algae, 60, 107-115.
Keywords: Ciguatera; Gambierdiscus; Growth; Ligh
Strain(s): 41184119 
PubMed: 28073553
DOI: 10.1016/j.hal.2016.10.009
Yoshimatsu, T., Yamaguchi, H., Iwamoto, H., Nishimura, T., Adachi, M. 2014 Effects of temperature, salinity and their interaction on growth of Japanese Gambierdiscus spp. (Dinophyceae). Harmful Algae, 35, 29-37.
Keywords: Ciguatera; Japanese Gambierdiscus; Growth; Temperature; Salinity
Strain(s): 41184119 
DOI: 10.1016/j.hal.2014.03.007
Yoshimura, S., Ranjbar, R., Inoue, R., Katsuda, T., Katoh, S. 2006 Effective utilization of transmitted light for astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 102, 97-101.
Keywords: astaxanthin; Haematococcus pluvialis; transmitted light; physiological response
Strain(s): 144 
PubMed: 17027870
DOI: 10.1263/jbb.102.97
Yoshioka, S., Taniguchi, F., Miura, K., Inoue, T., Yamano, T., Fukuzawa, H. 2004 The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell, 16, 1466-1477.
Strain(s): 2235 
PubMed: 15155888
DOI: 10.1105/tpc.021162
Yoshitomi, T., Kaminaga, S., Sato, N., Toyoshima, M., Moriyama, T., Yoshimoto, K. 2020 Formation of spherical palmelloid colony with enhanced lipid accumulation by gel encapsulation of Chlamydomonas debaryana NIES-2212. Plant Cell Physiol., 61, 158–168.
Keywords: Chlamydomonas; Acyltransferase; Alginate gel; Gel encapsulation; Palmelloid colony; Triacylglycerol
Strain(s): 2212 
PubMed: 31589321
DOI: 10.1093/pcp/pcz188
Yoshitomi, T., Shimada, N., Iijima, K., Hashizume, M., Yoshimoto, K. 2019 Polyethyleneimine-induced astaxanthin accumulation in the green alga Haematococcus pluvialis by increased oxidative stress. J. Biosci. Bioeng., 128, 751-754.
Keywords: Polyethyleneimine; Haematococcus pluvialis; Astaxanthin; Cellular uptake; Reactive oxygen species; Flocculant; Oxidative stress; Microalgae
Strain(s): 144 
PubMed: 31253510
DOI: 10.1016/j.jbiosc.2019.06.002
Yoshizako, F., Nishimura, A., Chubachi, M. 1992 Microbial reduction of cyclohexanone by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 74, 395-397.
Strain(s): 226 
DOI: 10.1016/0922-338X(92)90039-W
Yoshizako, F., Nishimura, A., Chubachi, M. 1994 Identification of algal transformation products from alicyclic ketones. J. Ferment. Bioeng., 77, 144-147.
Strain(s): 226 
DOI: 10.1016/0922-338X(94)90313-1
Yoshizako, F., Nishimura, A., Chubachi, M., Horii, T., Ueno, T. 1991 Bioconversion of cyclohexaneacetic acid to monohydroxycyclo-hexaneacetic acids by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 72, 343-346.
Strain(s): 226227 
Yoshizako, F., Ogino, M., Nishimura, A., Chubachi, M., Horii, T. 1995 Biotransformation of cyclic β-keto esters by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 79, 141-145.
Keywords: Chlorella pyrenoidosa Chick; cyclic β-keto esters; biotransformation; alkoxycarbolyl group elimination; carbonyl group reduction
Strain(s): 226 
DOI: 10.1016/0922-338X(95)94081-2
Yruela, I., Moreno-Yruela, C., Olsen, C. A. 2021 Zn2+-dependent histone deacetylases in plants: Structure and evolution. Trends Plant Sci., 26, 741-757.
Keywords: histone deacetylase; epigenetics; plant evolution; ductility; intrinsic disorder; zinc-binding
Strain(s): 8434106 
PubMed: 33461867
DOI: 10.1016/j.tplants.2020.12.011
Yu, Y., Zeng, Y., Li, J., Yang, C., Zhang, X., Luo, F., Dai, X. 2019 An algicidal Streptomyces amritsarensis strain against Microcystis aeruginosa strongly inhibits microcystin synthesis simultaneously. Sci. Total Environ., 650, 34-43.
Keywords: Harmful algal blooms; Microcystins; Algicidal activity; Streptomyces amritsarensis
Strain(s): 4490843 
PubMed: 30195130
DOI: 10.1016/j.scitotenv.2018.08.433
Yuasa, T., Horiguchi, T., Mayama, S., Takahashi, O. 2016 Gymnoxanthella radiolariae gen. et sp. nov. (Dinophyceae), a dinoflagellate symbiont from solitary polycystine radiolarians. J. Phycol., 52, 89-104.
Keywords: dinoflagellate; Gymnoxanthella radiolariae gen. et sp. nov.; molecular phylogeny; radiolarians; symbiont; Zooxanthella nutricula
Strain(s): 3649 
PubMed: 26987091
DOI: 10.1111/jpy.12371
Yuasa, T., Kawachi, M., Horiguchi, T., Takahashi, O. 2019 Chrysochromulina andersonii sp. nov. (Prymnesiophyceae), a new flagellate haptophyte symbiotic with radiolarians. Phycologia, 58, 211-224.
Strain(s): 4257 
DOI: 10.1080/00318884.2018.1541271
Yubuki, N., Inagaki, Y., Nakayama, T., Inouye, I. 2007 Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n.gen., n.sp., a new member of the Fornicata. J. Eucaryot. Microbiol., 54, 191-200.
Keywords: amitochondriate; Carpediemonas membranifera; diplomonads; Excavata; microaerophilic; retortamonads; typical excavates
Strain(s): 1843 
DOI: 10.1111/j.1550-7408.2007.00252.x
Yubuki, N., Nakayama, T., Inouye, I. 2008 A unique life cycle and perennation in a colorless chrysophyte Spumella sp. J. Phycol., 44, 164-172.
Keywords: cannibalism; Chrysophyceae; colorless chrysophyte; doubling time; growth rate; heterotrophic flagellate
Strain(s): 1846 
PubMed: 27041053
DOI: 10.1111/j.1529-8817.2007.00441.x
Yuki, Y., Yoshida, T., Hiroishi, S. 2002 Molecular detection of the toxic cyanobacteria [Yûdoku aoko no bunshi-shikibetsu to yosatsu he-no ôyô]. In Series of Fisheries Science Vol. 143, Prevention and Extermination Strategies of Harmful Algal Blooms [Suisan-gaku shirîzu 134, Yûgai-yûdoku sôrui burûmu no yobô to kujo] , Eds. by Hiroishi, S., Imai, I. & Ishimaru, T., Koseisha-Koseikaku, Tokyo, pp. 43-53 (in Japanese).
Strain(s): 738187888990919899100101102104105106108109110111112204230298299604 
Yuki-jirushi [Snow Brand] Milk Products Co.Ltd., Showa Denko K.K. 1992 Separation and purification of useful substances from Euglena [Euglena kara no yûyô-busshitsu no Bunri Seisei]. In The Advanced Technology of the Separation and Purification of the Materials for Physiologically Functional Foods and Their Development [Kinôsei Shokuhin Sozai no Kôdo Bunri Seisei to Kaihatsu], Ed. and published by The Japanese Research and Development Association for the High Separation System in Food Industry [Shokuhin Sangyô Hai-separêshon Sisutemu Gijutu Kenkyû Kumiai], Tokyo, pp. 363-382 (in Japanese).
Strain(s): 48 
Yumoto, K., Kasai, F., Kawachi, M. 2013 Taxonomic re-examination of Chlamydomonas strains maintained in the NIES-Collection. Microbiol. Cult. Coll., 29, 1-12.
Strain(s): 158437438440884968102110221048173318481849220122022203220422062207220822092210221122122213221422152216221822192220222222232224222522282229223022312233223422352236223722382239224022412242224322462247224823142315231623172318231923202321232223232324246224632499257525762577257825793284 
Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T. 2016 Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata. J. Jpn. Soc. Wat. Environ., 3, 63-70 (in Japanese with English summary).
Keywords: Green algar; EC50; Toxicity test; Antibacterial substance; Combined toxicity
Strain(s): 35 
DOI: 10.2965/jswe.39.63
Yamashita, N., Tanaka, H., Miyajima, K., Suzuki, Y. 2006 Evaluation of effect of seaage effluent on river water quality using AGP and algal growth inhibition tests. J. JSCE, 62, 191-200 (in Japanese with English summary).
Keywords: AGP test; algal growth inhibition test; sewage effluent; Tama River
Strain(s): 35 
DOI: 10.2208/jscejg.62.191
Yamashita, N., Fukunaga, A., Tanaka, H. 2017 Examination of microplate AGP test using green algae, diatom and blue-green algae and water quality evaluation of river water and treated sewage effluent by AGP test. Environmental science, 30, 250-260 (in Japanese with English summary).
Keywords: Algal growth potential; mircoplate; bioassay; eutrophication; water quality evaluation
Strain(s): 3590805 
DOI: 10.11353/sesj.30.250
Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M. 2004 Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton. Nippon Suisan Gakkaishi, 70, 123-130 (in Japanese with English summary).
Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase
Strain(s): 5324 
DOI: 10.2331/suisan.70.123
Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T. 2016 Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples. Sessile Organisms, 33, 38-43 (in Japanese with English summary).
Keywords: Residual chlorine; DPD; Seawater; Coscinodiscus wailesii
Strain(s): 15237323 
DOI: 10.4282/sosj.33.38
Yachi, S., Nagai, T., Katsumata, M. 2016 Variation in delayed fluorescence of green algae and diatom during the exposure and a subsequent recovery period. Jpn. J. Environ. Toxicol., 19, 35-46 (in Japanese with English summary).
Keywords: Recovery test; Physiological state of algae; 3,5-DCP
Strain(s): 35 
DOI: 10.11403/jset.19.35
Yukino, T., Hayashi, M., Inoue, Y., Imamura, J., Nagano, N., Murata, H. 2005 Preparation of docosahexaenoic acid fortified Spirulina platensis and its lipid and fatty acid compositions. Nippon Suisan Gakkaishi, 71, 74-79 (in Japanese with English summary).
Keywords: docosahexaenoic acid; DHA; Spirulina; foods with function claims
Strain(s): 39 
DOI: 10.2331/suisan.71.74
Yu, B. S., Sung, Y. J., Choi, H. I., Sirohi, R., Sim, S. J. 2021 Concurrent enhancement of CO2 fixation and productivities of omega-3 fatty acids and astaxanthin in Haematococcus pluvialis culture via calcium-mediated homeoviscous adaptation and biomineralization. Bioresour. Technol., 340, 125720 (article ID).
Keywords: Haematococcus pluvialis; Biomineralization; Omega-3 fatty acids; Astaxanthin
Strain(s): 144 
PubMed: 34365300
DOI: 10.1016/j.biortech.2021.125720

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