Search Reference

Sadakane, H. & Hatano, S. 1982 Isoenzymes of glucose 6-phosphate dehydrogenase in relation to frost hardiness of Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 157-167.
Strain(s): 2170 
Sadakane, H., Ishibashi, K., Yosimoto, M., Hatano, S. 1981 Effects of low temperature, light and O2 on chilling-sensitive and -resistant strains in Chlorella ellipsoidea. Plant Cell Physiol., 22, 657-666.
Keywords: chilling injury; Chlorella ellipsoidea; O2 evolution; O2 uptake
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a076209
Sadakane, H., Kabata, K., Ishibashi, K., Watanabe, T., Hatano, S. 1980 Studies on frost hardiness in Chlorella ellipsoidea. V. The role of glucose and related compounds. Environ. Exp. Bot., 20, 297-305.
Strain(s): 2170 
Sadakane, H., Kawanami, T., Imamura, H., Fukumoto, K., Kawai, Y., Hatano, S. 1978 Studies on synchronous culture in three strains of Chlorella ellipsoidea with different susceptibilities to low temperature. Sci. Bull. Fac. Agr., Kyushu Univ., 32, 161-168 (in Japanese).
Strain(s): 2170 
Saijo, H., Tsuruta, K., Kusumoto, N., Ashitani, T., Takahashi, K. 2013 Growth inhibition activities of Sugi bark components against Heterosigma akashiwo. J. Wood Sci., 59, 238-242.
Keywords: Sugi bark; Extract; Inhibition activity; Red tide plankton; Heterosigma akashiwo
Strain(s): 293 
DOI: 10.1007/s10086-013-1328-4
Saito, K., Matsumoto, M., Sekine, T., Murakoshi, I. 1989 Inhibitory substances from Myriophyllum brasiliense of growth of blue-green algae. J. Nat. Prod., 52, 1221-1226.
Strain(s): 4473 
DOI: 10.1021/np50066a004
Saito, M., Watanabe, H., Sasaki, M., Ookubo, M., Yarita, T., Shiraiwa, M., Asayama, M. 2023 Coproduction of lipids and carotenoids by the novel green alga Coelastrella sp. depending on cultivation conditions. Biotech. Rep., 37, e00769 (article ID).
Keywords: biorefinery; carotenoid; Coelastrella; dual production; lipid
Strain(s): 144 
PubMed: 36660172
DOI: 10.1016/j.btre.2022.e00769
Saito, T., Ichihara, T., Inoue, H., Uematsu, T., Hamada, S., Watanabe, T., Takimura, Y., Webb, J. 2020 Comparison of areal productivity of Nannochloropsis oceanica between lab-scale and industrial-scale raceway pond. Mar. Biotechnol., 22, 836–841.
Keywords: Microalgae production; Nannochloropsis; Open raceway pond; Sequential batch culture
Strain(s): 2145 
PubMed: 32860094
DOI: 10.1007/s10126-020-09990-3
Sakaguchi, M., Hausmann, K., Suzaki, T. 1998 Food capture and adhesion by the heliozoon Actinophrys sol. Protoplasma, 203, 130-137.
Keywords: Actinophrys sol; Exocytosis; Extrusomes; Feeding behavior; Heliozoa; Prey adhesion
Strain(s): 2497 
DOI: 10.1007/BF01279469
Sakaguchi, M., Murakami, H., Suzaki, T. 2001 Involvement of a 40-kDa glycoprotein in food recognition, prey capture, and induction of phagocytosis in the protozoon Actinophrys sol. Protist, 152, 33-41.
Strain(s): 24973374 
PubMed: 11401035
DOI: 10.1078/1434-4610-00041
Sakaguchi, M., Suzaki, T., Shigenaka, Y. 1997 Statistical analysis of spatial patterns of the heliozoan Actinophrys sol. Protoplasma, 196, 117-122.
Keywords: Heliozoa; Spatial point pattern; Cell distribution; Interaction potential; Likelihood analysis
Strain(s): 2497 
DOI: 10.1007/BF01281065
Sakaguchi, M., Suzuki, T. 1999 Monoxenic culture of the heliozoon Actinophrys sol. Eur. J. Protistol., 35, 1-10.
Keywords: Actinophrys sol; Antibiotic; Heliozoa; Monoxenic Culture
Strain(s): 24973374 
DOI: 10.1016/S0932-4739(99)80050-9
Sakaguchi, M., Suzuki, T., Khan, S. M. M. K. Hausmann, K. 2002 Food capture by kinetocysts in the heliozoon Raphidiophrys contractilis. Eur. J. Protistol., 37, 453-458.
Keywords: Exocytosis; Extrusome; Heliozoa; Kinetocyst
Strain(s): 24983374 
DOI: 10.1078/0932-4739-00847
Sakaguchi, T., Horikoshi, T., Nakajima, A. 1978 Uptake of uranium from seawater by microalgae. J. Ferm. Technol., 56, 561-565.
Strain(s): 21382139221222382279 
Sakaguchi, T., Tsuji, T., Nakajima, A., Horikoshi, T. 1979 Accumulation of cadmium by green microalgae. Eur. J. Appl. Microbiol. Biotechnol., 8, 207-215.
Strain(s): 2212227322742279 
DOI: 10.1007/BF00506184
Sakai, H., Katayama, H., Oguma, K., Ohgaki, S. 2011 Effect of photoreactivation on ultraviolet inactivation of Microcystis aeruginos. Water Sci. Technol., 63, 1224-1229.
Keywords: Microcystis aeruginosa; photoreactivation; UV treatment
Strain(s): 98 
PubMed: 21436560
DOI: 10.2166/wst.2011.362
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Growth inhibition of Anabaena variabilis by low- or medium-pressure UV lamp irradiation. Environ. Eng. Res., 42, 495-501 (in Japanese with English summary).
Keywords: growth inhibition; Anabaena variabilis; UV irradiation; model calculation
Strain(s): 23 
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Low- or medium-pressure UV lamp inactivation of Microcystis aeruginosa. J. Water Environ. Technol., 3, 55-61.
Keywords: Microcystis aeruginosa; low-pressure (LP) UV lamp; medium-pressure (MP) UV lamp; endonuclease sensitive site (ESS) assay; photoreactivation
Strain(s): 98 
Sakai, H., Oguma, K., Katayama, H., Ohgaki, S. 2007 Effects of low- or medium-pressure ultraviolet lamp irradiation on Microcystis aeruginosa and Anabaena variabilis. Water Res., 41, 11-18.
Keywords: Microcystis aeruginosa; Anabaena variabilis; Low-pressure ultraviolet lamp; Medium-pressure ultraviolet lamp; DNA damage; Photosynthetic activity
Strain(s): 2398 
PubMed: 17097715
DOI: 10.1016/j.watres.2006.09.025
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017 Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan. Fish. Sci., 83, 113-121.
Keywords: Algicidal bacteria; Real-time polymerase; chain reaction; Zostera marina; Harmful algal bloom; Most probable number
Strain(s): 1 
DOI: 10.1007/s12562-016-1048-y
Sakamori, S., Uraya, K., Annen, K. 2001 Eutrophication of the sea area (III). Bull. Toyama Pref. Environ. Sci. Res. Center, 29, 34-42 (in Japanese with English summary).
Strain(s): 561 
Sakamori, S., Yoshikawa, H., Annen, K. 2000 The research on the eutrophication of the sea area (II). Bull. Toyama Pref. Environ. Sci. Res. Center, 28, 31-41 (in Japanese with English summary).
Strain(s): 561 
Sakamoto, B., Hokama, Y., Horgen, FD., Scheuer, PJ., Kan, Y., Nagai, H. 2000 Isolation of a sulfoquinovosyl monoacylglycerol from Bryopsis sp. (Chlorophyta): identification of a factor causing a possible species-specific ecdysis response in Gambierdiscus toxicus (Dinophyceae). J. Phycol., 36, 924-931.
Keywords: Bryopsis sp.; Ecdysis; Gambierdiscus toxicus; 1-O-palmitoyl-3-O-(6'-sulfo-a-d-quinovopyrano-syl)-sn-glycerol; Sulfoquinovosyl monoacylglycerols
Strain(s): 615617 
DOI: 10.1046/j.1529-8817.2000.00006.x
Sakamoto, S., Yamaguchi, M., Watanabe, M. F., Watanabe, M., Kamiya, H. 1996 Distribution and characterization of lectins from natural and cultured Microcystis spp. In Harmful and Toxic Algal Blooms, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., Intergovernmental Oceanographic Commission of UNESCO 1996, pp. 569-572.
Strain(s): 1001021062981057106110661080 
Sakamoto, T., Hashimoto, A., Yamaba, M., Wada, N., Yoshida, T., Inoue-Sakamoto, K., Nishiuchi, T., Matsugo, S. 2019 Four chemotypes of the terrestrial cyanobacterium Nostoc commune characterized by differences in the mycosporine‐like amino acids. Phycol. Res., 67, 3-11.
Strain(s): 253839893990 
DOI: 10.1111/pre.12333
Sakamoto, T., Kumihashi, K., Kunita, S., Masaura, T., Inoue-Sakamoto, K., Yamaguchi, M. 2011 The extracellular-matrix-retaining cyanobacterium Nostoc verrucosum accumulates trehalose, but is sensitive to desiccation. FEMS Microbiol. Ecol., 77, 385-394.
Keywords: compatible solute; stress tolerance; extracellular; polysaccharide; water stress protein (WspA)
Strain(s): 25382539 
DOI: 10.1111/j.1574-6941.2011.01114.x
Sakamoto, T., Murata, N., Ohmori, M. 1991 The concentration of cyclic AMP and adenylate cyclase activity in cyanobacteria. Plant Cell Physiol., 32, 581-584.
Keywords: adenylate cyclase; cyanobacterium; cyclic AMP; cyclic nucleotide phosphodiesterase
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a078119
Sakata, T., Yoshikawa, T., Nishitarumizu, S. 2010 Purification of an algicidal substance produced by marine Pseudomonas sp. C55a-2. Mem, Fac. Fish. Kagoshima Univ., 59, 17-25.
Keywords: algicidal substance; Chaetoceros; Chattonella; Heterosigma; Pseudomona
Strain(s): 6121 
Sakayama, H. 2008 Taxonomy of Nitella (Charales, Charophyceae) based on comparative morphology of oospores and multiple DNA marker phylogeny using cultured material. Phycol. Res., 56, 202-215.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 161116281634170417051706 
DOI: 10.1111/j.1440-1835.2008.00502.x
Sakayama, H., Arai, S., Nozaki. H., Kasai, F., Watanabe, M. M. 2006 Morphology, molecular phylogeny and taxonomy of Nitella comptonii (Charales, Characeae). Phycologia, 45, 417-421.
Keywords: atpB gene; Charales; Charophyceae; internal transcribed spacer region; Japanese taxa; morphology; Nitella comptonii; oospores; psaB gene; rbcL gene; scanning electron microscopy; taxonomy
Strain(s): 170417051706 
DOI: 10.2216/05-31.1
Sakayama, H., Hara Y., Nozaki, H. 2004 Taxonomic re-examination of six species of Nitella (Charales, Charophyceae) from Asia, and phylogenetic relationships within the genus based on rbcL and atpB gene sequences. Phycologia, 43, 91-104.
Strain(s): 1634 
DOI: 10.2216/i0031-8884-43-1-91.1
Sakayama, H., Hara, Y., Arai, S., Sato, H., Nozaki, H. 2004 Phylogenetic analyses of Nitella subgenus Tieffallenia (Charales, Charophyceae) using nuclear ribosomal DNA internal transcribed spacer sequences. Phycologia, 43, 672-681.
Strain(s): 1628 
DOI: 10.2216/i0031-8884-43-6-672.1
Sakayama, H., Miyaji, K., Nagumo, T., Kato, M., Hara Y., Nozaki, H. 2005 Taxonomic re-examination of 17 species of Nitella subgenus Tieffallenia (Charales, Charophyceae) based on internal morphology of the oospore wall and multiple DNA marker sequences. J. Phycol., 41, 195-211.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 1628 
DOI: 10.1111/j.1529-8817.2005.04133.x
Sakio, Y., Ishibashi, M., Okuyama, E. 2000 Chemical constituents of a diatom Triceratium dubium. Nat. Med., 54, 104.
Keywords: Triceratium dubium; diatom; microalgae; epiloliolide; phaeophorbide
Strain(s): 556 
Sako, Y., Adachi, M., Ishida, Y. 1995 Specific monoclonal antibodies and DNA probes for the identification of the toxic dinoflagellate genus Alexandrium. In Harmful Marine Algal Blooms, Eds. by Lassus, P., et al., Lavoisier, Intercept Ltd., pp. 77-82.
Strain(s): 5118 
Sako, Y., Hosoi-Tanabe, S., Uchida, A. 2004 Fluorescence in situ hybridization using rRNA-targeted probes for simple and rapid identification of the toxic dinoflagelates Alexandrium tamarense and Alexandrium catenella. J. Phycol., 40, 598-605.
Keywords: Alexandrium; FISH method; LSU rRNA; molecular identification; paralytic shellfish poisoning (PSP); probe; toxic dinoflagellate
Strain(s): 1712331 
DOI: 10.1111/j.1529-8817.2004.03035.x
Sakomoto, T., Takabe,Y., Uemura, T., Masuda, T., Hoshikawa, Y. 2020 Feed utilisation of Chlorella vulgaris cultivated with aquaculture effluent. J. Water Environ. Technol., 18, 17-26.
Keywords: Chlorella vulgaris; aquaculture effluent; nutrient consumption; feed utilisation; amino acids
Strain(s): 2170 
DOI: 10.2965/jwet.19-069
Sakurai, K., Mori, N., Sato, N. 2014 Detection and characterization of phosphatidylcholine in various strains of the genus Chlamydomonas (Volvocales, Chlorophyceae). J. Plant Res., 127, 641-650.
Keywords: Chlamydomonas; Delta 5 desaturase; Diacylglyceryl-N,N,N-trimethylhomoserine; Fatty acid; Phosphatidylcholine
Strain(s): 22022207221222152219222522302242231624622499 
PubMed: 24947506
DOI: 10.1007/s10265-014-0644-0
Saldarriaga, J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R., Keeling, P. J. 2003 Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Microbiol., 53, 355-365.
Strain(s): 304 
PubMed: 12656195
DOI: 10.1099/ijs.0.02328-0
Saldarriaga, J. F., Taylor, F. J. R., Cavalier-Smith, T., Menden-Deuer, S., Keeling, P. J. 2004 Molecular data and the evolutionary history of dinoflagellates. Eur. J. Protistol., 40, 85-111.
Keywords: Dinoflagellates; Ribosomal RNA; Chloroplast evolution; Molecular phylogeny; Theca; Photosynthesis
Strain(s): 471 
DOI: 10.1016/j.ejop.2003.11.003
Saldarriaga, J. F., Taylor, F. J. R., Keeling, P. J., Cavalier-Smith, T. 2001 Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J. Mol. Evol., 53, 204-213.
Keywords: Plastid; Dinoflagellates; Small subunit rRNA; Phylogeny; Endosymbiosis
Strain(s): 304463 
PubMed: 11523007
DOI: 10.1007/s002390010210
Sandrini, G., Huisman, J., Matthijs, HC. 2015 Potassium sensitivity differs among strains of the harmful cyanobacterium Microcystis and correlates with the presence of salt tolerance genes. FEMS Mircobiol. Lett., 362 fnx121 (article ID).
Keywords: compatible solutes; cyanobacteria; harmful algal blooms; lake mitigation; microcystins; salt stress
Strain(s): 843 
PubMed: 26208527
DOI: 10.1093/femsle/fnv121
Sano, D., Ishifuji, S., Sato, Y., Imae, Y., Takaara, T., Masago, Y., Omura, T. 2011 Identification and characterization of coagulation inhibitor proteins derived from cyanobacterium Microcystis aeruginosa. Chemosphere, 82, 1096-1102.
Keywords: Aluminum-immobilized affinity; chromatography; Coagulation inhibition; Cyanobacterial protein; Microcystis aeruginosa; Phage display; Polyaluminum chloride
Strain(s): 91 
PubMed: 21211815
DOI: 10.1016/j.chemosphere.2010.12.005
Sano, T. & Kaya, K. 1995a Oscillamide Y, a chymotrypsin inhibitor from toxic Oscillatoria agardhii. Tetrahedron Letters, 36, 5933-5936.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01198-Q
Sano, T. & Kaya, K. 1995b A 2-amino-2-butenoic acid (Dhb)-containing microcystin isolated from Oscillatoria agardhii. Tetrahedron Letters, 36, 8603-8606.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01824-2
Sano, T. & Kaya, K. 1996 Oscillapeptin G, a tyrosinase inhibitor from toxic Oscillatoria agardhii. J. Nat. Prod., 59, 90-92.
Strain(s): 610 
Sano, T., Takagi, H., Kaya, K. 2004 A Dhb-microcystin from the filamentous cyanobacterium Planktothrix rubescens. Phytochemistry, 65, 2159-2162.
Keywords: Planktothrix rubescens; cyanobacterium; microcystin; Dhb-microcystin; hepatotoxin; cyanotoxin
Strain(s): 928 
DOI: 10.1016/j.phytochem.2004.03.034
Sano, T., Takagi, H., Nagano, K., Nishikawa, M., Kaya, K. 2011 Accurate LC-MS analyses for microcystions using per-15N-labeled microcystins. Anal. Bioanal. Chem., 399, 2511-2516.
Keywords: Microcystin; Stable isotope; Surrogate; Liquid chromatography-mass spectrometry; Accurate analysis
Strain(s): 107 
PubMed: 21221535
DOI: 10.1007/s00216-010-4639-y
Sano, T., Usui, T., Ueda, K., Osada, H., Kaya, K. 2001 Isolation of new protein phosphatase inhibitors from two cyanobacteria species, Planktothrix spp. J. Nat. Prod., 64, 1052-1055.
Strain(s): 905928 
PubMed: 11520225
DOI: 10.1021/np0005356
Santaeufemia, S., Abalde, J., Torres, E. 2019 Eco-friendly rapid removal of triclosan from seawater using biomass of a microalgal species: Kinetic and equilibrium studies. J. Hazard. Mater., 369, 674-683.
Keywords: Sorption; Phaeodactylum tricornutum; Removal; Kinetic
Strain(s): 4392 
PubMed: 30826560
DOI: 10.1016/j.jhazmat.2019.02.083
Sarai, C., Tanifuji, G., Nakayama, T., Kamikawa, R., Takahashi, K., Yazaki, E., Matsuo, E., Miyashita, H., Ishida, K-I., Iwataki, M., Inagaki, Y. 2020 Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc. Nati. Acad. Sci. U. S. A., 117, 5364-5375.
Keywords: secondary endosymbiosis; nucleomorph; endosymbiotic gene transfer; plastid; Pedinophyceae
Strain(s): 1868 
PubMed: 32094181
DOI: 10.1073/pnas.1911884117
Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L. 2023 Contributions on Lindane Degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID).
Keywords: Microcystis; lindane; linC; pesticides; bioremediation
Strain(s): 843 
DOI: 10.3390/w14081219
Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L., Sevilla, E. 2022 Contributions on lindane degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID).
Keywords: Microcystis; lindane; linC; pesticides; bioremediation
Strain(s): 843 
DOI: 10.3390/w14081219
Sardool, G., Daud, M. A., Hamatani, Y., Megat, M. J., Noor, M., Ustumi, M., Goto, M., Sugiura, N., Ujang, Z. 2021 Suppression of Aphanizomenon flos-aquae by solid polymer electrode (SPE) membrane electrolysis with aerated systems. PERINTIS eJournal, 11, 1-22.
Keywords: advance oxidation; aeration; cyanobacteria; degradation; electrolysis
Strain(s): 1258 
Sargent, D. F. & Taylor, C. P. S. 1972 Light-induced inhibition of respiration in DCMU-poisoned Chlorella caused by phytosystem I activity. Can. J. Bot., 50, 13-21.
Strain(s): 2151 
DOI: 10.1139/b72-003
Sartoni, G. & Sonni, C. 1991 Tribonema marinum J. Feldmann and Acinetospora crinita (Carmichael) Sauvageau in the benthic mucilaginous aggregates observed along Tuscan shores during the summer of 1991. Informatore Botanico Italiano, 23, 23-30 (in Italian with English summary).
Strain(s): 548 
Saruwatari, K., Satoh, M., Harada, N., Suzuki, I., Shiraiwa, Y. 2016 Change in coccolith morphology by responding to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi Seas. Biogeosciences, 13, 2743-2755.
Strain(s): 131133623366 
DOI: 10.5194/bg-13-2743-2016
Sasa, T. 1957 Effect of photphorescent particles suspended in the medium upon the efficiency of light-energy utilization by Chlorella cells. J. Gen. Appl. Microbiol., 3, 121-124.
Strain(s): 2170 
DOI: 10.2323/jgam.3.121
Sasa, T., Kunieda, R., Tamiya, H. 1960 Growing Daphnia (water-fleas) with Chlorella. J. Gen. Appl. Microbiol., 6, 252-255.
Strain(s): 2170 
Sasa, T., Suda, S., Watanabe, M. M., Takaichi, S. 1992 A yellow marine Chlamydomonas: morphology and pigment composition. Plant Cell Physiol., 33, 527-534.
Keywords: carotenoid; Chlamydomonas; Chlamydomonas parkeae; Chlorophyta; ultrastructure; 2,4-divinylprotochlorophyllide (DVP); flagellar apparatus; siphonaxanthin; siphonaxanthin decenoate; siphonaxanthin dodecenoate; siphonaxanthin octenoate
Strain(s): 440 
DOI: 10.1093/oxfordjournals.pcp.a078286
Sasa, T., Takaichi, S. Hatakeyama, N., Watanabe, M. M. 1992 A novel carotenoid ester, loroxanthin dodecenoate, from Pyramimonas parkeae (Prasinophyceae) and a chlorarachniophycean alga. Plant Cell Physiol., 33, 921-925.
Keywords: (3R,3'R,6'R)-β,ε-carotene-3,19,3'-triol 19-(2-dodecanoate); chlorarachniophyte; 1H-NMR; loroxanthin dodecenoate; Pyramimonas parkeae
Strain(s): 254 
DOI: 10.1093/oxfordjournals.pcp.a078342
Sasaki, G., Katoh, K., Hirose, N., Suga, H., Kuma, K., Miyata, T., Su, Z. H. 2007 Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes. Gene, 401(1-2), 135-144.
Keywords: conjugate alga; stonewort; gene family; divergence; phylogenetic tree; molecular evolution
Strain(s): 228 
DOI: 10.1016/j.gene.2007.07.009
Sasaki, K., Marquez, F. J., Nishio, N., Nagai, S. 1995 Promotive effect of 5-aminolevulinic acid on the growth and photosynthesis of Spirulina platensis. J. Ferment. Bioeng., 79, 453-457.
Keywords: 5-aminolevulinic acid; Spirulina platensis; phycocyanin; chlorophyll
Strain(s): 39 
DOI: 10.1016/0922-338X(95)91261-3
Satjarak, A. & Graham, L. E. 2017 Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes. J. Phycol., 53, 415-424.
Keywords: chloroplast DNA variation; chloroplast genome; intraspecific variation; prasinophyte; Pyramimonas parkeae
Strain(s): 254 
PubMed: 28130930
DOI: 10.1111/jpy.12515
Sato, M., Mogi, Y., Nishikawa, T., Miyamura, S., Nagumo, T., Kawano, S. 2009 The dynamic surface of dividing cyanelles and ultrastructure of the region directly below the surface in Cyanophora paradoxa. Planta, 229, 781-791.
Keywords: Chloroplast division; Cyanelle; Field emission (FE)-SEM; Glaucocystophyta; Peptidoglycan; FtsZ
Strain(s): 547 
PubMed: 19096871
DOI: 10.1007/s00425-008-0872-4
Sato, M., Murata, Y., Mizusawa, M., Iwahashi, H., Oka, S.-I. 2004 A simple and rapid dual-fluorescence viability assay for microalgae. Microbiol. Cult. Coll., 20, 53-59.
Keywords: microalgae; SYTOX Green; viability assay; autofluorescence
Strain(s): 32204 
Sato, M., Nishikawa, T., Yamazaki, T., Kawano, S. 2005 Isolation of the plastid FtsZ gene from Cyanophora paradoxa (Glaucocystophyceae, Glaucocystophyta). Phycol. Res., 53, 93-96.
Keywords: cyanelle; Cyanophora paradoxa; FtsZ; Glaucocystophyta; plastid division
Strain(s): 547 
DOI: 10.1111/j.1440-183.2005.00376.x
Sato, N. 1988 Dual role of methionine in the biosynthesis of diacylglyceryltrimethylhomoserine in Chlamydomonas reinhardtii. Plant Physiol., 86, 931-934.
Strain(s): 3284 
PubMed: 16666011
DOI: 10.1104/pp.86.3.931
Sato, N. 1989 Modulation of lipid and fatty acid content by carbon dioxide in Chlamydomonas reinhardtii. Plant Sci., 61, 17-21.
Keywords: carbon dioxide; Chlamydomonas; fatty acid; lipid
Strain(s): 3284 
DOI: 10.1016/0168-9452(89)90113-1
Sato, N. & Murata, N. 1980 Temperature shift-induced responses in lipids in the blue-green alga, Anabaena variabilis. The central role of diacylmonogalactosylglycerol in thermo-adaptation. Biochim. Biophys. Acta, 619, 353-366.
Strain(s): 2093 
PubMed: 6773583
DOI: 10.1016/0005-2760(80)90083-1
Sato, N. & Murata, N. 1981 Studies on the temperature shift-induced desaturation of fatty acids in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 22, 1043-1050.
Keywords: Anabaena variabilis; cyanobacterium; fatty acid desaturation; monogalactosyl diacylglycerol; temperature shift
Strain(s): 2093 
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga (cyanobacterium), Anabaena variabilis. III. UDPglucose: diacylglycerol glucosyltransferase in vitro. Plant Cell Physiol., 23, 1115-1120.
Keywords: Anabaena variabilis; blue-green alga; glucosyltransterase; glyceroglycolipids; monoglucosyl diacylglycerol
Strain(s): 2093 
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. I. Lipid class. Biochim. Biophys. Acta, 710, 271-278.
Strain(s): 2093 
DOI: 10.1016/0005-2760(82)90109-6
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. II. Fatty acids and lipid molecular species. Biochim. Biophys. Acta, 710, 279-289.
Strain(s): 2093 
Sato, N., Katsumata, Y., Sato, K., Tajima, N. 2014 Cellular dynamics drives the emergence of supracellular structure in the Cyanobacterium, Phormidium sp. KS. Life-Basel, 4, 819-836.
Keywords: cyanobacteria; Phormidium; supracellular structure; biofilm; spiral formation; emergence of order; slime gun model
Strain(s): 4263 
PubMed: 25460162
DOI: 10.3390/life4040819
Sato, N., Mori, N., Hirashima, T., Moriyama, T. 2016 Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis. Plant J., 87, 281–292.
Keywords: Chlamydomonas; Cyanidioschyzon merolae; phosphatidylcholine biosynthesis; phosphatidylethanolamine methyltransferase; phosphoethanolamine methyltransferase
Strain(s): 22072242 
PubMed: 27133435
DOI: 10.1111/tpj.13199
Sato, N., Moriyama, T. 2007 Genomic and biochemical analysis of lipid biosynthesis in the unicellular Rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. Eukaryot. Cell, 6, 1006-1017.
Strain(s): 3377 
PubMed: 17416897
DOI: 10.1128/EC.00393-06
Sato, N., Murata, N., Miura, Y., Ueta, N. 1979 Effect of growth temperature on lipid and fatty acid compositions the blue-green algae, Anabaena variabilis and Anacystis nidulans. Biochim. Biophys. Acta, 572, 19-28.
Strain(s): 20933277 
PubMed: 104734
DOI: 10.1016/0005-2760(79)90196-6
Sato, N., Seyama, Y., Murata, N. 1986 Lipid-linked desaturation of palmitic acid in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis studied in vivo. Plant Cell Physiol., 27, 819-835.
Keywords: Anabaena variabilis; blue-green alga (cyanobacterium); lipid-linked desaturation; mass spectroscopy; monogalactosyl diacylglycerol; palmitoleic acid biosynthesis
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077168
Sato, N., Yoshitomi, T., Mori-Moriyama, N. 2020 Characterization and biosynthesis of lipids in Paulinella micropora MYN1. Evidence for efficient integration of chromatophores into cellular lipid metabolism. Plant Cell Physiol., 61, 869–881.
Keywords: Paulinella micropora; Betaine lipid; chromatophore; endosymbiosis; lipid metabolism; metabolic flow
Strain(s): 4060 
PubMed: 32044983
DOI: 10.1093/pcp/pcaa011
Sato, R., Fujishima, H., Itabashi, Y. 2003 Analysis of algal phosphatidylglycerols by chiral phase high-performane liquid chromatography. Bull. Fish. Sci. Hokkaido Univ., 54, 7-12 (in Japanese with English summary).
Keywords: phosphatidylglycerol; diastereomer; Enteromorpha sp.; Chlorella vulgaris; Heterosigma akashiwo; spinach; parsley; green tea; chiral phase HPLC; 3,5-dinitrophenylurethane
Strain(s): 227 
Sato, S., Nishimura, T., Uehara, K., Sakanari, H., Tawong, W., Hariganeya, N., Smith, K., Rhodes, L., Yasumoto, T., Taira, Y., Suda, S., Yamaguchi, H., Adachi, M. 2011 Phylogeography of Ostreopsis along West Pacific coast, with special reference to a novel clade from Japan. PLoS One, 6, e27983 (article ID).
Strain(s): 3351 
PubMed: 22164222
DOI: 10.1371/journal.pone.0027983
Sato, T. & Hori, K. 2009 Cloning, expression, and characterization of a novel anti-HIV lectin from the cultured cyanobacterium, Oscillatoria agardhii. Fish. Sci., 75, 743-753.
Keywords: anti-HIV; high-mannose N-glycans; Oscillatoria agardhii; lectin; recombinant lectin
Strain(s): 204 
DOI: 10.1007/s12562-009-0074-4
Sato, Y., Ito, A., Tate, N., Sasaki, A., Aizawa, J., Umita, T. 2008 Impact of coexistent metal on survival of diatom in presence of polynuclear hydroxy-alminium ion. Environ. Eng. Res., 45, 139-145.
Keywords: polynuclear hydroxyl-Aluminium ion; diatom; complex ecological impact of coexistent metal cations
Strain(s): 487 
Sato, Y., Murakami, M., Miyazawa, K., Hori, K. 2000 Purification and characterization of a novel lectin from a freshwater cyanobacterium, Oscillatoria agardhii. Comp. Biochem. Physiol., Part B 125, 169-177.
Keywords: agglutinins; blue-green algae; cyanobacteria; carbohydrate-binding specificity; isolation; lectin; eucheuma; Myxococcus xanthus; Oscillatoria agardhii; N-terminal sequence
Strain(s): 204 
PubMed: 10817903
DOI: 10.1016/S0305-0491(99)00164-9
Sato, Y., Okuyama, S., Hori, K. 2007 Primary structure and carbohydrate binding specificity of a potent anti-HIV lectin isolated from the filamentous cyanobacterium Oscillatoria agardhii. J. Biol. Chem., 282, 11021-11029.
Strain(s): 204 
PubMed: 17314091
DOI: 10.1074/jbc.M701252200
Satoh, E., Satoh, S., Fujii, T. 1992 Synchronization of phosphorylation of a chloroplast protein with the cell division cycle in Heterosigma akashiwo. Plant Cell Physiol., 33, 275-280.
Keywords: cell cycle; chloroplast stromal protein; Heterosigma akashiwo; protein phosphorylation
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a078251
Satoh, H. & Takeda, H. 1989 Detection and first characterization of a cell-wall lytic activity in Chlorella ellipsoidea C-27. Physiol. Plant., 77, 20-26.
Keywords: autolysis; cell wall; Chlorella; lytic activity
Strain(s): 2170 
DOI: 10.1111/j.1399-3054.1989.tb05972.x
Satoh, M., Iwamoto, K., Suzuki, I., Shiraiwa, Y. 2009 Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions. Mar. Biotechnol., 11, 327-333.
Keywords: calcification; coccolith production; coccolithophore; cold stress; Emiliania huxleyi; phosphate deprivation
Strain(s): 837 
PubMed: 18830665
DOI: 10.1007/s10126-008-9147-0
Sausen, N., Malavasi, V., Melkonian, M. 2018 Molecular phylogeny, systematics and revision of the type species of Lobomonas, L. francei,(Volvocales, Chlorophyta) and closely related taxa. J. Phycol., 54, 198-214.
Keywords: crystalline glycoprotein lattice; CWClade; ITS2; L. panduriformis; rbcL; Reinhardtinia; scanning electron microscopy; SSU nrRNA
Strain(s): 25741845647454156657766673587988088288313621708185825673923 
PubMed: 29278416
DOI: 10.1111/jpy.12615
Sawada, K. & Shiraiwa, Y. 2004 Alkenone and alkenoic acid compositions of the membrane fractions of Emiliania huxleyi. Phytochemistry, 65, 1299-1307.
Keywords: coccolithophorid; Emiliania huxleyi; Haptophyceae; alkenones; alkenoic acids; lipid biomarker; membrane fractionation; intracellular localization; unsaturation index
Strain(s): 837 
DOI: 10.1016/j.phytochem.2004.03.015
Sawada, K., Handa, N., Shiraiwa, Y., Danbara, A., Montani, S. 1996 Long-chain alkenones and alkyl alkenoates in the coastal and pelagic sediments of the northwest North Pacific, with special reference to reconstruction of Emiliania huxleyi and Gephyrocapsa oceanica ratios. Org. Geochem., 24, 751-764.
Keywords: alkenone, alkyl alkenoate; Uk'37; EE/K37; EE/K38; Emiliania huxleyi; Gephyrocapsa oceanica; coccolithophorid assemblage; northwest North Pacific sediment
Strain(s): 837838 
DOI: 10.1016/S0146-6380(96)00087-3
Scanlan, D. J., Hess, W. R., Partensky, F., Newman, J., Vaulot, D. 1996 High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. Eur. J. Phycol., 31, 1-9.
Strain(s): 288028812882 
DOI: 10.1080/09670269600651131
Scheibe, J. 1972 Photoreversible pigment: occurrence in a blue-green alga. Science, 176, 1037-1039.
Strain(s): 37 
PubMed: 17778430
DOI: 10.1126/science.176.4038.1037
Schlüter, L., David, G. S., Jørgensen, N. O. G., Podduturi, R., Tucci, A., Dias, A. S., da Silva, R. J. 2018 Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production. Aquac. Environ. Interact., 10, 35-48.
Keywords: Microcystins; Pigment analysis; Cyanobacteria; Phytoplankton composition; HPLC; Fish farm
Strain(s): 107 
DOI: 10.3354/aei00256
Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S., Kroutil, W. 2020 Extending the library of light-dependent protochlorophyllide oxidoreductases and their solvent tolerance, stability in light and cofactor lexibility. ChemCatChem, 12, 4044-4051.
Strain(s): 3755 
DOI: 10.1002/cctc.202000561
Schoevaert, D., Krishnamswamy, S., Couturier, M., Marano, F. 1988 Ciliary beat and cell motility of Dunaliella: computer analysis of high speed microcinematography. Biol. Cell, 62, 229-240.
Strain(s): 2253 
DOI: 10.1111/j.1768-322X.1988.tb00725.x
Schönknecht, G., Chen, W.-H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Bräutigam, A., Baker, B. J., Banfield, J. F., Garavito, R. M., Carr, K., Wilkerson, C., Rensing, S. A., Gagneul, D., Dickenson, N. E., Oesterhelt, C., Lercher, M. J., Weber, A. P. M. 2013 Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, , 1207-1210.
Strain(s): 3638 
PubMed: 23471408
DOI: 10.1126/science.1231707
Schulze, D., Robenek, H., McFadden, G. I., Melkonian, M. 1987 Immunolocalization of a Ca2+-modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector. Eur. J. Cell Biol., 45, 51-61.
Strain(s): 2253 
Schwarze, P., Frandsen, N. O. 1960 Herstellung von Chlorella-Farbmutanten mit Hilfe von radioaktiven Isotopen. Naturwissenschaften, 47, 47.
Strain(s): 21612162 
Schwender, J., Gemünden, C., Lichtenthaler, H. K. 2001 Chlorophyta exclusively use the 1-deoxyxylulose 5-phosphate/2-C-methylerythritol 4-phosphate pathway for the biosynthesis of isoprenoids. Planta, 212, 416-423.
Keywords: Charophyta; 1-Deoxy-D-xylulose; Green alga; Isopentenyl diphosphate; Isoprenoid biosynthesis; Mevalonate
Strain(s): 296 
PubMed: 11289606
DOI: 10.1007/s004250000409
Seger, M., Mammadova, F., Villegas-Valencia, M., de Freitas, B. B., Chang, C. R. S., Isachsen, I., Hemstreet, H., Abualsaud, F., Boring, M., Lammers, P. J., Lauersen, K. J. 2023 Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga Cyanidioschyzon merolae 10D. Metab. Eng. Commun., 17, e00226 (article ID).
Keywords: Microalgae; red algae; ketocarotenoids; Cyanidiophyceae; polyextremophiles; astaxanthin
Strain(s): 3377 
PubMed: 37449053
DOI: 10.1016/j.mec.2023.e00226
Sekiguchi, M., Ohtsuki, A., Shibata, Y., Morita, M. 1995 Arsenic compounds accumulated in phytoplanktons of marine origin. J. Environ. Chem. [Kankyô-Kagaku], 5, 366-367 (in Japanese with English title).
Strain(s): 16208440 
Sekiguchi, Y., Kobayashi, A., Takayama, Y., Oide, M., Fukuda, A., Yamamoto, Y., Okajima, K., Oroguchi, T., Hirakawa, T., Inui, Y., Matsunaga, S., Yamamoto, M., Nakasako, M. 2018 Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 153-173.
Strain(s): 2087 
DOI: 10.1007/978-981-10-6101-1_10
Sekimoto, H. 2000 Intercellular communication during sexual reproduction of Closterium (Conjugatophyceae). J. Plant Res., 113, 343-352.
Keywords: chemotaxis; Closterium; conjugation; mating; sex pheromone; sexual reproduction
Strain(s): 6465228229 
DOI: 10.1007/PL00013941
Sekimoto, H. 2002 Production and secretion of a biologically active Closterium sex pheromone by Saccharomyces cerevisiae. Plant Physiol. Biochem., 40, 789-794.
Keywords: Closterium; conjugation; pheromone; PR-IP; sexual reproduction
Strain(s): 6768 
DOI: 10.1016/S0981-9428(02)01432-8
Sekimoto, H. 2004 Molecular characterization of a novel sex pheromone, PR-IP inducer, in Closterium peracerosum-strigosum-littorale complex. Jpn. J. Phycol. (Sôrui), 52, Suppl., 117-122.
Keywords: Closterium; conjugation; gamete mating; sex pheromone, sexual reproduction
Strain(s): 6768 
Sekimoto, H. 2017 Sexual reproduction and sex determination in green algae. J. Plant Res., 130, 423-431.
Keywords: Closterium; Chlamydomonas; Sexual reproduction; Sex determination
Strain(s): 6768 
PubMed: 28188480
DOI: 10.1007/s10265-017-0908-6
Sekimoto, H. & Fujii, T. 1991 Sexual reproduction of microalgae : its physiological and biochemical study. Cell Science, 7, 562-571 (in Japanese with English title).
Strain(s): 6768 
Sekimoto, H. & Fujii, T. 1992 Analysis of gametic protoplast release in the Closterium peracerosum-strigosum-littorale complex (Chlorophyta). J. Phycol., 28, 615-619.
Keywords: biologically active glycoprotein; Closterium peracerosum-strigosum-littorale complex; conjugation; gametic protoplast release
Strain(s): 6768 
DOI: 10.1111/j.0022-3646.1992.00615.x
Sekimoto, H. & Fujii, T. 1993 Cell-cell interaction involved in the sexual reproduction of Closterium [Mikadukimo no yûsei seisyoku ni kakawaru saibôkan jôhô kôkan]. Iden, 47 (1), 43-48 (in Japanese).
Strain(s): 64656768 
Sekimoto, H. & Fukumoto, R. 1999 Sex pheromones in Closterium. Chem. Regul. Plant, 34, 305-315.
Strain(s): 64656768 
Sekimoto, H., Fukumoto, R., Dohmae, N., Takio, K. Fujii, T., Kamiya, Y. 1998 Molecular cloning of a novel sex pheromone responsible for the release of a different sex pheromone in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 39, 1169-1175.
Keywords: Clostreium; conjugation; gamete; mating; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1093/oxfordjournals.pcp.a029317
Sekimoto, H., Komiya, A., Tsuyuki, N., Kawai, J., Kanda, N., Ootsuki, R., Suzuki, Y., Toyoda, A., Fujiyama, A., Kasahara, M., Abe, J., Tsuchikane, Y., Nishiyama, T. 2023 A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. New Phytol., 237, 1636-1651.
Keywords: Closterium peracerosum-strigosum-littorale complex; mating type; RWP-RK; sex determination; sexual reproduction; streptophyta; Zygnematophyceae
Strain(s): 6769 
PubMed: 36533897
DOI: 10.1111/nph.18662
Sekimoto, H., Satoh, S., Fujii, T. 1990 Biochemical and physiological properties of a protein inducing protoplast release during conjugation in the Closterium peracerosum-strigosum-littorale complex. Planta, 182, 348-354.
Keywords: Clostreium; conjugation (Closterium); glycoprotein; protoplast release in conjugation
Strain(s): 6768 
DOI: 10.1007/BF02411384
Sekimoto, H., Satoh, S., Fujii, T. 1992 Biochemical and physiological properties of a gametic protoplast-release-inducing protein in Closterium. Korean J. Phycol., 7, 121-129.
Keywords: Clostreium; conjugation; glycoprotein; protoplast release in conjugation
Strain(s): 6768 
Sekimoto, H., Satoh, S., Fujii, T. 1993 Analysis of binding of biotinylated protoplast-release-inducing protein that induces release of gametic protoplasts in the Closterium peracerosum-strigosum-littorale complex. Planta, 189, 468-474.
Keywords: Clostreium; conjugation (Closterium); protoplast-release; inducing protein; pheromone; receptor
Strain(s): 6768 
PubMed: 24178507
DOI: 10.1007/BF00194447
Sekimoto, H., Sone, Y., Fujii, T. 1994 A cDNA encoding a 19-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 105, 447.
Strain(s): 67 
PubMed: 8029362
DOI: 10.1104/pp.105.1.447
Sekimoto, H., Sone, Y., Fujii, T. 1994 cDNA cloning of a 42-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 104, 1095-1096.
Strain(s): 67 
PubMed: 8165253
DOI: 10.1104/pp.104.3.1095
Sekimoto, H., Sone, Y., Fujii, T. 1994 Regulation of expression of the genes for a sex pheromone by an inducer of the sex pheromone in the Closterium peracerosum-strigosum-littorale complex. Planta, 193, 137-144.
Keywords: Clostreium complex; inducer (of protoplast-release-inducing protein); pheromone; protoplast-release-inducing protein (PR-IP); sexual reproduction
Strain(s): 6768 
PubMed: 7764622
DOI: 10.1007/BF00191617
Sekimoto, H., Sone, Y., Fujii, T. 1995 Biochemical, physiological, and molecular analysis of sexual isolation in the species complex Closterium peracerosum-strigosum-littorale (Chlorophyta). J. Phycol., 31, 611-615.
Keywords: Chlorophyta; Closterium peracerosum-strigosum-littorale complex; conjugation; pheromone; plotoplast-release-inducing protein (PR-IP); sexual isolation
Strain(s): 64656768 
DOI: 10.1111/j.1529-8817.1995.tb02557.x
Sekimoto, H., Tanabe, Y., Takizawa, M., Ito, N., Fukumoto, R., Ito, M. 2003 Expressed sequence tags from the Closterium peracerosum-strigosum-littorale complex, a unicellular charophycean alga, in the sexual reproduction process. DNA Res., 10, 147-153.
Keywords: Closterium; conjugation; EST; sexual reproduction
Strain(s): 6768 
PubMed: 14621293
DOI: 10.1093/dnares/10.4.147
Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Shirosaki, H., Fukuda,H., Demura, T., Ito, M. 2006 Gene expression profiling using cDNA microarray analysis of the sexual reproduction stage of the unicellular charophcean alga Closterium peracerosum-strigosum-littorale comples. Plant Physiol., 141, 271-279.
Strain(s): 6769 
PubMed: 16565296
DOI: 10.1104/pp.116.078048
Sekine, M. 2021 Coupling process of simultaneous desulfurization–nitrification and microalgal cultivation for biogas and effluent from anaerobic digestion. PhD thesis, Soka University, Japan, 128 pp.
Strain(s): 2173 
Sekine, M., Yoshida, A., Akizuki, S., Kishi, M., Toda, T. 2020 Microalgae cultivation using undiluted anaerobic digestate by introducing aerobic nitrification–desulfurization treatment. Wat. Sci. Tech., 82, 1070-1080.
Keywords: aerobic sludge; anaerobic digestion effluent; Chlorella sorokiniana; free ammonia inhibition; post anaerobic digestion treatment; simultaneous bacterial process
Strain(s): 2173 
DOI: 10.2166/wst.2020.153
Sekino, K. & Shiraiwa, Y. 1994 Accumulation and utilization of dissolved inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 35, 353-361.
Keywords: bicarbonate uptake; calcification; CO2 uptake; coccolithophorid; Emiliania huxleyi; inorganic carbon accumulation
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a078603
Sekino, K. & Shiraiwa, Y. 1995 CO2 release from the culture of calcifying and noncalcifying marine unicellular algae. J. Mar. Biotechnol., 3, 101-104.
Strain(s): 837 
Sekino, K. & Shiraiwa, Y. 1996 Evidence for the involvement of mitochondrial respiration in calcification in a marine coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 37, 1030-1033.
Keywords: calcification; CO2 fixation; coccolithophorids; Emiliania huxleyi; mitochondrial respiration; photosynthesis
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a029034
Sekino, K., Kobayashi, H., Shiraiwa, Y. 1996 Role of coccoliths in the utilization of inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi: a survey using intact cells and protoplasts. Plant Cell Physiol., 37, 123-127.
Keywords: calcification; coccolith; coccolithophorid; Emiliania huxleyi; inorganic carbon utilization; protoplast
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a028921
Selivanova, E. A., Poshvina, D. V., Khlopko, Yu. A., Gogoleva, N. E., Plotnikov, A. O. 2018 Diversity of prokaryotes in planktonic communities of saline sol-iletsk lakes (Orenburg Oblast, Russia). Microbiology, 87, 569-582.
Keywords: saline lakes; biodiversity; prokaryotes; halophilic bacteria; archaea; planktonic communities; high-throughput sequencing; Illumina; 16S rRNA gene
Strain(s): 2041267 
DOI: 10.1134/S0026261718040161
Senavirathna, M. D. H. J. & Jayasekara, M. A. D. D. 2023 Temporal variation of 2-MIB and geosmin production by Pseudanabaena galeata and Phormidium ambiguum exposed to high-intensity light. Water Environ. Res., 95, e10834 (article ID).
Keywords: extreme light; filamentous cyanobacteria; growth suppression; odorous compounds; stress response
Strain(s): 5122119 
PubMed: 36635233
DOI: 10.1002/wer.10834
Senavirathna, M. D. H. J., Muhetaer, G., Atapaththu, K. S. S., Fujino, T. 2021 Egeria densa allelopathy on Microcystis aeruginosa under different light intensities and preliminary insight into inter-parameter relationships. Water Air Soil Pollut., 232, 135 (article ID).
Keywords: Biological control; Cyanobacteria; Coexistence; Environmental management; Macrophytes; Species interactions
Strain(s): 111 
DOI: 10.1007/s11270-021-05088-1
Seo, P-S. & Yokota, A. 2003 The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Micobiol., 49, 191-203.
Keywords: cyanobacteria; gyrB; phylogeny; protein evolution; rpoC1; rpoD1; 16S rDNA
Strain(s): 19212225391042093209521283277 
PubMed: 12949700
DOI: 10.2323/jgam.49.191
Seto, K. & Degawa, Y. 2018 Collimyces mutans gen. et sp. nov. (Rhizophydiales, Collimycetaceae fam. nov.), a new chytrid parasite of Microglena (Volvocales, clade Monadinia). Protist, 169, 507-520.
Keywords: Chytrid; Collimyces mutans; Microglena; parasite; Rhizophydiales; zoospore ultrastructure
Strain(s): 7558582220223527432744 
PubMed: 29935342
DOI: 10.1016/j.protis.2018.02.006
Seto, K., Nakada, T., Tanabe, Y., Yoshida, M., Kagami, M. 2022 Aphelidium parallelum, sp. nov., a new aphelid parasitic on selenastracean green algae. Mycologia, 114, 544-555.
Keywords: Aphelida; Aphelidiomycota; molecular phylogeny; parasitoid; ultrastructure; 1 new taxon
Strain(s): 35385219321954214 
PubMed: 35605094
DOI: 10.1080/00275514.2022.2039487
Setohigashi, Y., Hamaji, T., Hayama, M., Matsuzaki, R., Nozaki, H. 2011 Uniparential inheritance of chloroplast DNA is strict in the isogamous volvocalean Gonium. PLoS One, 6, e19545 (article ID).
Strain(s): 24552457 
PubMed: 21559302
DOI: 10.1371/journal.pone.0019545
Sevilla, J. B., Nakajima, F., Kasuga, I. 2014 Comparison of aquatic and dietary exposure of heavy metals Cd, Cu, and Zn to benthic ostracod Heterocypris incongruens. Environ. Toxicol. Chem., 33, 1624-1630.
Keywords: Aqueous exposure; Heavy metal; Dietary exposure; Ostracod; Sediment
Strain(s): 2170 
PubMed: 24691681
DOI: 10.1002/etc.2596
Shao, J., He, Y., Li, F., Zhang, H., Chen, A., Luo, S., Gu, J.-D. 2016 Growth inhibition and possible mechanism of oleamide against the toxin-producing cyanobacterium Microcystis aeruginosa NIES-843. Ecotoxicology, 25, 225-233.
Keywords: Oleamide; Microcystis aeruginosa; Growth inhibition; Photosynthesis; Microcystins
Strain(s): 843 
PubMed: 26547872
DOI: 10.1007/s10646-015-1582-x
Shao, J., Jiang, Y., Wang, Z., Peng, L., Luo, S., Gu, J., Li, R. 2014 Interactions between algicidal bacteria and the cyanobacterium Microcystis aeruginosa: lytic characteristics and physiological responses in the cyanobacteria. Int. J. Environ. Sci. Technol., 11, 469-476.
Keywords: Bacillus sp.; Gene expressions; Lytic characteristics; Microcystis aeruginosa; Oxidative stress; Photosynthesis inhibition
Strain(s): 843 
DOI: 10.1007/s13762-013-0205-4
Shao, J., Liu, D., Gong, D., Zeng, Q., Yan, Z., Gu, J.-D. 2013 Inhibitory effects of sanguinarine against the cyanobacterium Microcystis aeruginosa NIES-843 and possible mechanisms of action. Aquat. Toxicol., 142-143, 257-263.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 843 
PubMed: 24060579
DOI: 10.1016/j.aquatox.2013.08.019
Shao, J., Peng, L., Luo, S., Yu, G., Gu, J.-D., Lin, S., Li, R. 2013 First report on the allelopathic effect of Tychonema bourrellyi (Cyanobacteria) against Microcystis aeruginosa (Cyanobacteria). J. Appl. Phycol., 25, 1567-1573.
Keywords: Tychonema bourrellyi; Microcystis aeruginosa; Allelopathy; Volatile substances; ß-Ionone; Cyanobacteria
Strain(s): 843 
DOI: 10.1007/s10811-012-9969-z
Shao, J., Wang, Z., Liu, Y., Liu, H., Peng, X., Wei, X., Lei, M., Li, R. 2012 Physiological responses of Microcystis aeruginosa NIES-843 (cyanobacterium) under the stress of chitosan modified kaolinite (CMK) loading. Ecotoxicology, 21, 698-704.
Keywords: Physiological responses; Microcystis aeruginosa; Chitosan modified kaolinite
Strain(s): 843 
PubMed: 22095162
DOI: 10.1007/s10646-011-0828-5
Shao, J., Xu, Y., Wang, Z., Jiang, Y., Yu, G., Peng, X., Li, R. 2011 Elucidating the toxicity targets of β-ionone on photosynthetic system of Microcystis aeruginosa NIES-843 (cyanobacteria). Aquat. Toxicol., 104, 48-55.
Keywords: Microcystis aeruginosa; Photosynthesis; Gene expression; Chlorophyll a fluorescence
Strain(s): 843 
PubMed: 21543049
DOI: 10.1016/j.aquatox.2011.03.014
Shao, J., Yu, G, Wang, Z., Wu, Z, Peng, X., Li, R. 2010 Towards clarification of the inhibitory mechanism of wheat bran leachate on Microcystis aeruginosa NIES-843 (cyanobacteria): physiological responses. Ecotoxicology, 19, 1634-1641.
Keywords: Wheat bran leachate; Microcystis; Gene expression; Photosynthesis
Strain(s): 843 
PubMed: 20882340
DOI: 10.1007/s10646-010-0549-1
Sharifah, E. N. & Eguchi, M. 2011 The phytoplankton Nannochloropsis oculata enhances the ability ofRoseobacter clade bacteria to inhibit the growth of Vibrio anguillarum. PLoS One, 6, e26756 (article ID).
Strain(s): 2145 
PubMed: 22053210
DOI: 10.1371/journal.pone.0026756
Sharifah, E. N. & Eguchi, M. 2012 Benefits of live phytoplankton, Chlorella vulgaris, as a biocontrol agent against fish pathogen Vibrio anguillarum. Fish. Sci., 78, 367-373.
Keywords: Chlorella vulgaris; Vibrio anguillarum; Biocontrol; Sulfitobacter sp.
Strain(s): 1269 
DOI: 10.1007/s12562-011-0465-1
Shatari, Y. & Ogawa, S. 2001 Observation of cell division in Closterium (Zygnematales, Chlorophyta) and its application to the teaching materials in high school biology. Jpn. J. Biol. Educ., 41, 90-99 (in Japanese with English summary).
Keywords: asexual reproduction; cell division; Closterium; teaching material
Strain(s): 52182 
Shen, M., Xu, JL., Tsang, TY., Au, D. W. T. 2010 Toxicity comparison between Chattonella marina and Karenia brevis using marine medaka (Oryzias melastigma): evidence against the suspected ichthyotoxins of Chattonella marina. Chemosphere, 80, 585-591.
Keywords: Harmful algal blooms (HABs); Chattonella marina; Karenia brevis; Marine medaka; Brevetoxins; Free fatty acids
Strain(s): 3 
PubMed: 20444485
DOI: 10.1016/j.chemosphere.2010.03.051
Shen, O., Wang, Q., Miao, H., Shimada, M., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M., Shimizu, K. 2021 Temperature affects growth, geosmin/2-methylisoborneol production, and gene expression in two cyanobacterial species. Environ. Sci. Pollut. Res., 29, 12017–12026.
Keywords: Cyanobacteria; Temperature; Cell growth; Geosmin; 2-MIB; Gene expression
Strain(s): 512824 
PubMed: 34558048
DOI: 10.1007/s11356-021-16593-5
Shen, Q., Shimizu, K., Miao, H., Tsukino, S., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M. 2020 Effects of elevated nitrogen on the growth and geosmin productivity of Dolichospermum smithii. Environ. Sci. Pollut. Res., 28, 177–184.
Keywords: Geosmin; geoA Expression; Cyanobacteria; Nitrogen; Earthy-musty odor
Strain(s): 824 
PubMed: 32803599
DOI: 10.1007/s11356-020-10429-4
Shen, X. F., Xu, Y. P., Jiang, Y. F., Gao, L. J., Tong, X. Q., Gong, J., Yang, Y. F., Zeng, R. J. 2024 Evaluating nutrient limitation in co-culture of Chlorella pyrenoidosa and Rhodobacter sphaeroides. Sci. Total Environ., 906, 167706 (article ID).
Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Nitrogen starvation
Strain(s): 2168 
PubMed: 37820812
DOI: 10.1016/j.scitotenv.2023.167706
Shen, X. F., Xu, Y. P., Tong, X. Q., Huang, Q., Zhang, S., Gong, J., Chu, F. F., Zeng, R. J. 2022 The mechanism of carbon source utilization by microalgae when co-cultivated with photosynthetic bacteria. Bioresour. Technol., 365, 28152 (article ID).
Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Carbon mechanism
Strain(s): 22721682280 
PubMed: 36265788
DOI: 10.1016/j.biortech.2022.128152
Shen, X.-F., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Biosynthesis of high yield fatty acids from Chlorella vulgaris NIES-227 under nitrogen starvation stress during heterotrophic cultivation. Water Res., 81, 294-300.
Keywords: Microalgae; Nitrogen starvation; Heterotrophic cultivation; Fatty acid content; Fatty acid yield; Glucose
Strain(s): 227 
PubMed: 26081436
DOI: 10.1016/j.watres.2015.06.003
Shen, X.-F., Liu, J.-J., Chauhan, A. S., Hu, H., Ma, L.-L., Lam, P.K.S., Zeng, R. J. 2016 Combining nitrogen starvation with sufficient phosphorus supply for enhanced biodiesel productivity of Chlorella vulgaris fed on acetate. Algal Res., 17, 261-267.
Keywords: Heterotrophic cultivation; Lipid productivity; Biodiesel; Microalgae; Nutrient regulation; pH control
Strain(s): 227 
DOI: 10.1016/j.algal.2016.05.018
Shen, X.-F., Liu, J.-J., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Enhancement of FAME productivity of Scenedesmus obliquus by combining nitrogen deficiency with sufficient phosphorus supply in heterotrophic cultivation. Appl. Energy, 158, 348-354.
Keywords: Scenedesmus obliquus; Heterotrophic cultivation; Acetate; Nitrogen deficiency; Phosphorus; Biodiesel productivity
Strain(s): 2280 
DOI: 10.1016/j.apenergy.2015.08.057
Shen, X.-F., Qin, Q.-W., Yan, S.-K., Huang, J.-L., Liu, K., Zhou, S.-B. 2019 Biodiesel production from Chlorella vulgaris under nitrogen starvation in autotrophic, heterotrophic, and mixotrophic cultures. J. Appl. Phycol., 31, 1589–1596.
Keywords: Fatty acid; Chlorella vulgaris; Chlorophyta; Heterotrophic cultivation; Mixotrophic cultivation; Nitrogen starvation; iTRAQ analysis
Strain(s): 227 
DOI: 10.1007/s10811-019-01765-1
Shen, X-F., Gao, L-J., Zhou, S-B., Huang, J-L., Wu, C-Z., Qin, Q-W., Zeng, R. J. 2020 High fatty acid productivity from Scenedesmus obliquus in heterotrophic cultivation with glucose and soybean processing wastewater via nitrogen and phosphorus regulation. Sci. Total Environ., , 134596 (article ID).
Keywords: Scenedesmus obliquus; heterotrophic cultivation; soybean processing wastewater; nitrogen deficiency; phosphorus; biodiesel productivity
Strain(s): 2280 
PubMed: 31780158
DOI: 10.1016/j.scitotenv.2019.134596
Shen, X-F., Hu, H., Ma, L-L., Lam, P. K. S., Yan, S-K., Zhou, S-B., Zeng, R. J. 2018 FAMEs production from Scenedesmus obliquus in autotrophic, heterotrophic and mixotrophic cultures under different nitrogen conditions. Environ. Sci.-Wat. Res. Technol., 4, 461-468.
Strain(s): 2280 
DOI: 10.1039/C7EW00470B
Sheng, B., Fan, F., Huang, J. K., Bai, W. M., Wang, J., Li, S. L., Li, W., Wan, M. X., Li, Y. G. 2018 Investigation on models for light distribution of Haematococcus pluvialis during astaxanthin accumulation stage with an application case. Algal Res., 33, 182-189.
Keywords: Light attenuation model; Haematococcus pluvialis; CFD;Induction experiment
Strain(s): 144 
DOI: 10.1016/j.algal.2018.05.011
Shi, X., Chang, X., Guo, X., Zhao, C., Tong, S. 2021 Calcification moderates the biochemical responses of Gephyrocapsa oceanica to ocean acidification. Mar. Biol. Res., 17, 569-575.
Strain(s): 1318 
DOI: 10.1080/17451000.2021.2016841
Shi, Y., Liu, Y., Zhang, J., Gao, B. 2019 Regulation of five-antibiotic mixture on Microcystis aeruginosa exposed to sublethal doses of ultraviolet radiation. Int. J. Environ. Sci. Technol., 16, 8229–8238.
Keywords: Cyanobacterial removal; Antibiotics contamination; Photosynthesis; Microcystins ; Antioxidant responses
Strain(s): 843 
DOI: 10.1007/s13762-019-02318-2
Shiba, K. & Inaba, K. 2017 Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae. J. Plant Res., 130, 465-473.
Keywords: Calaxin; Cilia; Dynein; Opisthokont; Prasinophyte; Sperm flagella
Strain(s): 626 
PubMed: 28424932
DOI: 10.1007/s10265-017-0931-7
Shibakami, M. & Sohma, M. 2017 Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films. Carbohydr. Polym., 155, 416-424.
Keywords: Paramylon; β-1,3-glucan; Thermoplastic; Acylation; Euglena
Strain(s): 48 
DOI: 10.1016/j.carbpol.2016.08.093
Shibakami, M. & Sohma, M. 2018 Thermal, crystalline, and pressure-sensitive adhesive properties of paramylon monoesters derived from an euglenoid polysaccharide. Carbohydr. Polym., 200, 239-247.
Strain(s): 48 
PubMed: 30177162
DOI: 10.1016/j.carbpol.2018.08.005
Shibakami, M., Sohma, M., Hayashi, M. 2012 Fabrication of doughnut-shaped particles from spheroidal paramylon granules of Euglena gracilis using acetylation reaction. Carbohydr. Polym., 87, 452-456.
Keywords: Paramylon; B-1,3-Glucan; Paramylon doughnuts; Euglena gracilis; Acetylation
Strain(s): 48 
DOI: 10.1016/j.carbpol.2011.08.012
Shibata, A., Takahashi, F., Imamura, N., Kasahara, M. 2021 Characteristics of maltose transport system in the endosymbiont Chlorella variabilis of Paramecium bursaria. Phycol. Res., 69, 219-225.
Strain(s): 227 
DOI: 10.1111/pre.12461
Shibata, K., Morimura, Y., Tamiya, H. 1964 Precise measurement of the change of statistical distribution of cell size occurring during the synchronous culture of Chlorella. Plant Cell Physiol., 5, 315-320.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a079047
Shibata, M., Kashino, Y., Satoh, K., Koike, H. 2001 Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a glaucocystophyte, Cyanophora paradoxa. Plant Cell Physiol., 42, 733-741.
Keywords: Cyanophora paradoxa; glaucocystophyte; oxygen evolution; photosystem II; PsbO; thylakoid membranes
Strain(s): 547 
PubMed: 11479380
DOI: 10.1093/pcp/pce092
Shibukawa, K., Takamura, Y., Takao, E., Irie, M., Yagi, O. 1986 Studies on the growth factors of an axenic clone of the cyanobacterium Microcystis aeruginosa K-3A. Jpn. J. Limnol., 47, 247-255 (in Japanese with English summary).
Keywords: cyanobacteria; Microcystis; vitamin B12; growth factor
Strain(s): 604 
Shih, C., Chen, H., Lee, H., Tsai, H. 2015 Purple chromoprotein gene serves as a new selection marker for transgenesis of the microalga Nannochloropsis oculata. PLoS One, 10, e0120780 (article ID).
Strain(s): 2146 
PubMed: 25793255
DOI: 10.1371/journal.pone.0120780
Shihira, I. & Krauss, R. W. 1965 Chlorella. Physiology and taxonomy of forty-one isolates. , University of Maryland, College Park. pp. 1-97.
Strain(s): 685687 
Shihira-Ishikawa, I., Osafune, T., Ehara, T., Ohkuro, I., Hase, E. 1977 An early light-independent phase of chloroplast development in dark-grown cells of Euglena gracilis Z. I. Dependence of the plastid development on previous culture conditions. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 445-454.
Strain(s): 48 
Shikata, T., Kitatsuji, S., Yuasa, K. 2023 Strain, cell density, and nutrient condition affect patterns of diurnal vertical migration and superoxide production in a red-tide alga. Front. Cell. Dev. Biol., 11, 1134227 (article ID).
Strain(s): 1 
PubMed: 37123416
DOI: 10.3389/fcell.2023.1134227
Shikata, T., Taniguchi, E., Sakamoto, S., Kitatsuji, S., Yamasaki, Y., Yoshida, M., Oikawa, H. 2020 Phylogeny, growth and toxicity of the noxious red-tide dinoflagellate Alexandrium leei in Japan. Reg. Stud. Mar. Sci., 36, 101265 (article ID).
Keywords: Fish; Haemolytic activity; Photoinhibition; rDNA; Rotifer; Temperature
Strain(s): 2146 
DOI: 10.1016/j.rsma.2020.101265
Shikata, T., Yuasa, K., Kitatsuji, S., Sakamoto, S., Akita, K., Fujinami, Y., Nishiyama, Y., Kotake, T., Tanaka, R., Yamasaki, Y. 2021 Superoxide Production by the Red Tide-Producing Chattonella marina Complex (Raphidophyceae) Correlates with Toxicity to Aquacultured Fishes. Antioxidants, 10, 1635 (article ID).
Keywords: harmful algal bloom; interstrain variation; oxidant stress; reactive oxygen species (ROS)
Strain(s): 1 
PubMed: 34679769
DOI: 10.3390/antiox10101635
Shimada, A., Maruyama, T., Miyachi, S. 1996 Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankters, Prochlorococcus marinus and Synechococcus sp.. Mar. Biol., 127, 15-23.
Strain(s): 28842886 
DOI: 10.1007/BF00993639
Shimada, K., Kitamura, N., Yoshida, Y., Matsushima, H., Asada, Y. 2010 Effects of water soluble extract from the dead leaves of deciduous trees on the growth control of toxic cyanobacteria like Microcystis aeruginosa. In Water Pollution X, Eds. by Marinov, A. M. & Brebbia, C. A., WIT Press, Bucharest. pp. 71-82.
Strain(s): 102 
Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017 Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis. Sci Rep., 7, 41022 (article ID).
Strain(s): 48 
PubMed: 28106164
DOI: 10.1038/srep41022
Shimakawa, G., Murakami, A., Niwa, K., Matsuda, Y., Wada, A., Miyake, C. 2019 Comparative analysis of strategies to prepare electron sinks in aquatic photoautotrophs. Photosynth. Res., 139, 401–411.
Keywords: Reactive oxygen species; P700 oxidation; Photosystem I; Seaweeds
Strain(s): 7051959213821452147 
PubMed: 29845382
DOI: 10.1007/s11120-018-0522-z
Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S. 2021 Coral symbionts evolved a functional polycistronic flavodiiron gene. Photosynth. Res., 151, 113–124.
Keywords: Flavodiiron proteins; Polycistronic gene; Gene fusion; Coral symbionts; Evolution
Strain(s): 4077 
PubMed: 34309771
DOI: 10.1007/s11120-021-00867-7
Shimasaki, Y., Mukai, K., Takai, Y., Qiu, X., Oshima, Y. 2021 Recent progress in the study of peroxiredoxin in the harmful algal bloom species Chattonella marina. Antioxidants, 10, 162 (article ID).
Keywords: 2-Cys peroxiredoxin; antioxidant enzyme; growth potential; photosynthesis; oxidative stress
Strain(s): 13 
PubMed: 33499182
DOI: 10.3390/antiox10020162
Shimasaki, Y., Tsuyama, M., Tasmin, R., Khanam, M. R. M., Qiu, X., Oshima, Y. 2015 Comparative study of toxicological responses of chlorophyllrelated parameters in the marine diatom Skeletonema sp. exposed to tributyltin and Irgarol. Jpn. J. Environ. Toxicol., 18, 1-10.
Keywords: tributyltin; Irgarol; diatom; chlorophyll; photosynthesis
Strain(s): 324 
DOI: 10.11403/jset.18.1
Shimba, S., Unno, K., Okada, S. 1993 Characteristics of the photosynthetic metabolism of carbon in deuterated Chlorella ellipsoidea C-27. Plant Cell Physiol., 34, 255-262.
Keywords: Chlorella ellipsoidea; deuterium; isotope effect; photosynthetic metabolism of carbon
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a078415
Shimizu, I., Yamashita, K., Tokunaga, E. 2022 Development of a simple fabrication method for magnetic micro stir bars and induction of rotational motion in Chlamydomonas reinhardtii. Micromachines, 13, 1842 (article ID).
Keywords: magnetic micro stirrer bar; microchip; motion analysis; microalga; Chlamydomonas; neodymium magnet; flagella; orbital motion
Strain(s): 2238 
PubMed: 36363863
DOI: 10.3390/mi13111842
Shimizu, K., Sano, T., Kubota, R., Kobayashi, N., Tahara, M., Obama, T., Sugimoto, N., Nishimura, T., Ikarashi, Y. 2014 Effects of the amino acid constituents of microcystin variants on cytotoxicity to primary cultured rat hepatocytes. Toxins, 6, 168-179.
Keywords: microcystin; variants; cytotoxicity; primary cultured rat hepatocytes; environmental water
Strain(s): 90595610928 
PubMed: 24380975
DOI: 10.3390/toxins6010168
Shimizu, K., Utsumi, M., Okano, K., Itayama, T., Iwami, N., Maseda, H., Kinohira, H., Li, J., Inamori, Y., Zhang, Z., Sugiura, N. 2016 Removal of Microcystis aeruginosa cells and microcystin-LR using ceramic carrier in a continuous flow bioreactor. Jpn. J. Water Treat. Biol., 52, 35-43.
Keywords: protozoa; water treatment; ceramic carrier; microcystin-producing; cyanobacteria
Strain(s): 102 
Shimizu, T., Oda, T., Ito, H., Imai, I. 2017 Isolation and characterization of algicidal bacteria and its effect on a musty odor-producing cyanobacterium Dolichospermum crassum in a reservoir. Water Sci. Technol.-Water Supply, 17, 792-798.
Keywords: algicidal bacteria; Anabaena crassa; Dolichospermum crassum; geosmin; musty odor; Rheinheimera spp
Strain(s): 4407 
DOI: 10.2166/ws.2016.179
Shimogawara, K. & Muto, S. 1989 Heat shock induced change in protein ubiquitination in Chlamydomonas. Plant Cell Physiol., 30, 9-16.
Keywords: ATP-dependent proteolytic system; Chlamydomonas; heat shock response; protein degradation; ubiquitin
Strain(s): 2138 
Shimonaga, T., Fujiwara, S., Kaneko, M., Izumo, A., Nihei, S., Francisco, P. B., Satoh, A., Fujita, Naoko., Nakamura, Y., Tsuzuki, M. 2007 Variation in Storage α-polyglucans of red algae: amylose and semi-amylopectin types in Porphyridium and goycogen type in Cyanidium. Mar. Biotechnol., 9, 192-202.
Keywords: Amylose; glycogen; granule-bound starch synthase; red algae; semi-amylopection
Strain(s): 5512138 
PubMed: 17160635
DOI: 10.1007/s10126-006-6104-7
Shimonaga, T., Konishi, M., Oyama, Y., Fujiwara, S., Satoh, A., Fujita, N., Colleoni, C., Buléon, A., Putaux, J.-L., Ball, S. G., Yokoyma, A., Hara, Y., Nakamura, Y., Tsuzuki, M. 2008 Variation in Storage α-polyglucans of the Porphyridiales (Rhodophyta). Plant Cell Physiol., 49, 103-116.
Keywords: Amylose; Floridean starch; Glycogen; Porphyridiales; Rhodophyta; Semi-amylopection
Strain(s): 181442505305512138216022582280 
PubMed: 18079144
DOI: 10.1093/pcp/pcm172
Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2021 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101, 101942 (article ID).
Keywords: 5S ribosomal RNA gene; Aeruginosin; Horizontal gene transfer; Microcystis; Prenyltransferase; Oscillatorin
Strain(s): 204 
PubMed: 33526179
DOI: 10.1016/j.hal.2020.101942
Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412.
Keywords: comparative genomics; cyanobacteria; genome sequence; nitrogen fixation
Strain(s): 2104 
PubMed: 26494835
DOI: 10.1093/dnares/dsv022
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017 Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970. GenomeA, 5, e00139-17 (article ID).
Strain(s): 970 
PubMed: 28385852
DOI: 10.1128/genomeA.00139-17
Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Agardhipeptins A and B, two new cyclic hepta- and octapeptide, from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 13129-13136.
Strain(s): 204 
DOI: 10.1016/0040-4020(96)00775-2
Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Aeruginosins 205A and -B, serine protease inhibitory glycopeptides from the cyanobacterium Oscillatoria agardhii (NIES-205). J. Org. Chem., 62, 1810-1813.
Strain(s): 205 
Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Anabaenopeptins E and F, two new cyclic peptides from the cyanobacterium Oscillatoria agardhii (NIES-204). J. Nat. Prod., 60, 139-141.
Strain(s): 204 
DOI: 10.1021/np960597p
Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Circinamide, a novel papain inhibitor from the cyanobacterium Anabaena circinalis (NIES-41). Tetrahedron, 53, 5747-5754.
Strain(s): 41 
DOI: 10.1016/S0040-4020(97)00285-8
Shin, H. J., Murakami, M., Matsuda, H., Ishida, K., Yamaguchi, K. 1995 Oscillapeptin, an elastase and chymotrypsin inhibitor from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron Letters, 36, 5235-5238.
Strain(s): 204 
DOI: 10.1016/0040-4039(95)00980-Q
Shin, H. J., Murakami, M., Matsuda, H., Yamaguchi, K. 1996 Microviridins D-F, serine protease inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-204). Tetrahedron, 52, 8159-8168.
Strain(s): 204 
DOI: 10.1016/0040-4020(96)00377-8
Shinobu, K., Abe, S., Asano, K., Abe, T. 1992 On the laboratory experiment of algal culturing (AGP-test) [Sôrui baiyô no shitsunai jikken (AGP shiken) ni tsuite]. Heisei 4-nendo Tôhoku Chihô Kensetsu-kyoku Kan-nai Gijutsu Kenkyû Happyôkai Shiryô, Kyô-28, 151-154 (in Japanese).
Strain(s): 30 
Shinohara, K., Ito, Y., Okunishi, S., Maeda, H. 2024 Elucidating the seasonal dominance replacement mechanism of harmful raphidophytes Chattonella marina and Heterosigma akashiwo using the Lotka–Volterra model. Ecol. Model., 491, 110660 (article ID).
Keywords: Lotka–Volterra model; Phytoplankton; Red tide; Numerical analysis; Seasonal dominance replacement; Competitive interaction
Strain(s): 115 
DOI: 10.1016/j.ecolmodel.2024.110660
Shinozaki, A., Sato, N., Hayashi, Y. 2009 Peroxisomal targeting signals in green algae. Protoplasma, 235, 57-66.
Keywords: Closterium; green algae; peroxisomal targeting signal (PTS); peroxisome; transport
Strain(s): 228 
PubMed: 19214701
DOI: 10.1007/s00709-009-0031-1
Shirabe, T., Ito, K., Yoshimura, E. 2008 Dequenching of Cu(I)-bathocuproinedisulfonate complexes for high-performance liquid chromatographic determination of phytochelatins, heavy-metal-binding peptides produced by the primitive red alga Cyanidioschyzon merolae. Anal. Chem., 80, 9360-9362.
Strain(s): 3377 
PubMed: 19551996
DOI: 10.1021/ac801741b
Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027.
Strain(s): 3715 
PubMed: 18469125
DOI: 10.1128/AEM.00509-08
Shiraishi, H. 2015 Association of heterotrophic bacteria with aggregated Arthrospira platensis exopolysaccharides: implications in the induction of axenic cultures. Biosci. Biotechnol. Biochem., 79, 331-341.
Keywords: cyanobacteria; Arthrospira platensis; exopolysaccharides; axenic cultures; Alcian blue
Strain(s): 3946 
PubMed: 25333502
DOI: 10.1080/09168451.2014.972333
Shiraishi, H. 2016 Cryopreservation of the edible alkalophilic cyanobacterium Arthrospira platensis. Biosci. Biotechnol. Biochem., 80, 2051-2057.
Keywords: cyanobacteria; dietary supplements; spirulina; Arthrospira platensis; cryopreservation
Strain(s): 39462308 
PubMed: 27240586
DOI: 10.1080/09168451.2016.1189320
Shiraishi, H. & Nishida, H. 2023 Complete genome sequence of the edible filamentous cyanobacterium Arthrospira platensis NIES-39, based on long-read sequencing. Microbiol. Resour. Ann., 12, e0113922 (article ID).
Strain(s): 39 
PubMed: 36537808
DOI: 10.1128/mra.01139-22
Shiraishi, H. & Toyoda, A. 2021 The use of a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide–based colorimetric assay in the viability analysis of the filamentous cyanobacterium Arthrospira platensis. Bioscience, Biotechnology, and Biochemistry, 85, 739-742.
Keywords: colorimetric viability assay; cyanobacteria; heat sensitivity; spirulina
Strain(s): 39 
PubMed: 33624771
DOI: 10.1093/bbb/zbaa050
Shiraishi, H., Sasase, M., Nakashima, A. S. 2024 Helicoid morphology of Arthrospira platensis NIES-39 confers temperature compensation in the longitudinal movement velocity of its trichomes. Phycology, 4, 104-116.
Keywords: Arthrospira platensis; cell movement; cyanobacteria; gliding motility; helix; multicellularity; spirulina; temperature compensation
Strain(s): 39 
DOI: 10.3390/phycology4010006
Shiraishi, H., Tabuse, Y. 2013 The AplI restriction-modification system in an edible cyanobacterium, Arthrospira (Spirulina) platensis NIES-39, recognizes the nucleotid sequence 5'-CTGCAG-3'. Biosci. Biotechnol. Biochem., 77, 782-788.
Keywords: Arthrospira platensis; Spirulina; restriction enzyme; DNA methyltransferase; edible cyanobacteria
Strain(s): 39 
PubMed: 23563565
DOI: 10.1271/bbb.120919
Shiraiwa, Y. 2003 Physiological regulation of carbon fixation in the photosynthesis and calcification of coccolithophorids. Comp. Biochem. Physiol. B-Biochem. Mol. Biol., 136, 775-783.
Keywords: carbon dioxide fixation; calcification; calcium carbonate crystal; cell growth; coccolith; coccolithophorids; Emiliania huxleyi; photosynthesis; nutrient-depletion effect; Warburg effect
Strain(s): 837 
PubMed: 14662302
DOI: 10.1016/S1096-4959(03)00221-5
Shiraiwa, Y. & Kayano, K. 2007 Coccolith. In Development of New Functional Materials Inspired by Biomineralization , Ed. By Kato, T., CMC Publications, Tokyo, pp. 52-63.
Strain(s): 837 
Shiraiwa, Y. & Miyachi, S. 1985 Effects of temperature and CO2 concentration on induction of carbonic anhydrase and changes in efficiency of photosynthesis in Chlorella vulgaris 11h. Plant Cell Physiol., 26, 543-549.
Keywords: carbonic anhydrase; Chlorella vulgaris; CO2 concentration; photosynthesis; temperature
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076938
Shiraiwa, Y. & Miyachi, S. 1985 Role of carbonic anhydrase in photosynthesis of blue-green alga (cyanobacterium) Anabaena variabilis ATCC 29413. Plant Cell Physiol., 26, 109-116.
Keywords: Anabaena variabilis ATCC 29413; carbonic anhydrase; CO2 effect; CO2 transport; cyanobacterium; photosynthesis
Strain(s): 2095 
DOI: 10.1093/oxfordjournals.pcp.a076877
Shiraiwa, Y. & Miyachi, S. 1993 Factors controlling induction of carbonic anhydrase and efficiency of photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 24, 919-923.
Keywords: carbonic anhydrase; Chlorella vulgaris (11h cell); CO2 fixation; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076596
Shiraiwa, Y., Danbara, A., Kanke, Y. 2004 Characterization of highly oxygen-sensitive photosynthesis in coccolithophorids. Jpn. J. Phycol. (Sôrui), 52, Suppl., 87-94.
Keywords: CO2 fixation; coccolithophorids; Emiliania huxleyi; glycolate pathway; O2 effect; O2 inhibition; photorespiratory nitrogen cycle; Warburg effect
Strain(s): 837838 
Shiraiwa, Y., Fakler, J., Miyachi, S. 1981 Factors controlling carbonic anhydrase activity in Chlorella vulgalis 11h. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, pp. 493-499.
Strain(s): 2160 
Shiraiwa, Y., Goyal, A., Tolbert, N. E. 1993 Alkalization of the medium by unicellular green algae during uptake of dissolved inorganic carbon. Plant Cell Physiol., 34, 649-657.
Keywords: alkalization; dissolved inorganic carbon concentrating mechanism; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a078467
Shiraiwa, Y., Hatano-Sugimoto, Y., Satoh, M. 2003 Regulation of intracellular calcification and algal growth by nutrient supply in coccolithophorids. In Biomineralization (BIOM2001): formation, diversity, evolution and application, Proceedings of th 8th International Symposium on Biomineralization, Eds. by Kobayashi & Ozawa, pp. 241-246.
Keywords: algal bloom; calcification; coccolithophorid; Emiliania huxleyi; Gephyrocapsa oceanica; nitrate; phosphate; nutrient-depletion
Strain(s): 837838 
Shiraiwa, Y., Yokoyama, S., Satoh, A. 1991 pH-dependent regulation of carbonic anhydrase induction and change in photosynthesis during adaptation of Chlorella cells to low CO2. Jpn. J. Phycol. (Sôrui), 39, 355-362.
Strain(s): 2170 
Shiratori T., Yokoyama A., Ishida K. 2014 Phylogeny, ultrastructure, and flagellar apparatus of a new marimonad flagellate Abollifer globosa sp. nov. (Imbricatea, Cercozoa). Protist, 165, 808-824.
Keywords: Cercozoa; Marimonadida; heterotrophic flagellate; ultrastructure; phylogenetic analysis; flagellar apparatus
Strain(s): 3697 
PubMed: 25460232
DOI: 10.1016/j.protis.2014.10.003
Shiratori, T., Akinori, Y., Ishida, K-I. 2020 Morphology, ultrastructure, and phylogeny of two novel species of Ventrifissura (V. oblonga n. sp. and V. velata n. sp., Thecofilosea, Cercozoa). Protist, 171, 125731 (article ID).
Strain(s): 4233 
PubMed: 32464531
DOI: 10.1016/j.protis.2020.125731
Shiratori, T., Fujita, S., Shimizu, T., Nakayama, T., Ishida, K-I. 2017 Viridiuvalis adhaerens gen. et sp. nov., a novel colony-forming chlorarachniophyte. J. Plant Res., 130, 999–1012.
Keywords: Chlorarachniophyceae; Chlorarachniophycota; Phylogeny; Taxonomy; Viridiuvalis adhaerens; Ultrastructure
Strain(s): 4109 
PubMed: 28642986
DOI: 10.1007/s10265-017-0961-1
Shiratori, T., Suzuki, S., Kakizawa, Y., Ishida, K-I. 2019 Phagocytosis-like cell engulfment by a planctomycete bacterium. Nat. Commun., 10, 5529 (article ID).
Strain(s): 2670 
PubMed: 31827088
DOI: 10.1038/s41467-019-13499-2
Shiratori, T., Yabuki, A., Ishida, K-I. 2012 Esquamula lacrimiformis n.g., n. sp., a new member of Thaumatomonads that lacks siliceous scales. J. Eucaryot. Microbiol., 59, 527-536.
Keywords: Cercozoa; extrusome; microbody; phylogeny; taxonomy; ultrastructure
Strain(s): 2745 
PubMed: 22742560
DOI: 10.1111/j.1550-7408.2012.00635.x
Shirokawa, Y. & Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID).
Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution
Strain(s): 2364 
PubMed: 27807268
DOI: 10.1098/rspb.2016.1632
Shirokawa, Y. & Shimada, M. 2020 Synchronized emergence under diatom sperm competition. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 287, 20201074 (article ID).
Keywords: sexual differentiation; evolutionary game theory; synchronization; centric diatom; spem competition
Strain(s): 2364 
PubMed: 33023410
DOI: 10.1098/rspb.2020.1074
Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253.
Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes
Strain(s): 236323642365 
DOI: 10.1080/09670262.2012.697580
Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503 (article ID).
Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system
Strain(s): 2364 
PubMed: 23760641
DOI: 10.1098/rspb.2013.0503
Shitanda, I., Takada, K., Sakai, Y., Tatsuma, T. 2005 Compact amperometric algal biosensors for the evaluation of water toxicity. Anal. Chim. Acta, 530, 191-197.
Keywords: amperometric biosensor; Chlorella vulgaris; algae; alginate gel; polyion complex; herbicides
Strain(s): 227 
DOI: 10.1016/j.aca.2004.09.073
Shizuka, K., Ikenaga, M., Murase, J., Nakayama, N., Matsuya, N., Kakino, W., Taruya, H., Maie, N. 2020 Diversity of 2-MIB-producing cyanobacteria in Lake Ogawara: microscopic and molecular ecological approaches. Aquacult. Sci., 68, 9-23.
Keywords: Pseudanabaena; Amplicon sequencing; Real-time PCR; 2-MIB
Strain(s): 4062406342374238 
DOI: 10.11233/aquaculturesci.68.9
Shoguchi, E., Beedessee, G., Hisata, K., Tada, I., Narisoko, H., Satoh, N., Kawachi, M., Shinzato, C. 2021 A new dinoflagellate genome illuminates a conserved gene cluster involved in sunscreen biosynthesis. Genome Biol. Evol., 13, evaa235 (article ID).
Keywords: cyanobacterial bloom; comparative genomics; ecophysiology; genomic complexity; metatranscriptome; Microcystis aeruginosa; adaptation; cyanobacteria; ecogenomics; water blooms
Strain(s): 2907 
PubMed: 33146374
DOI: 10.1093/gbe/evaa235
Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).
Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis
Strain(s): 40764077 
PubMed: 29898658
DOI: 10.1186/s12864-018-4857-9
Shoguchi, E., Kawachi, M., Shinzato, C., Beedessee, G. 2024 Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies. Environ. Microbiol. Rep., 16, e13238 (article ID).
Strain(s): 2907380840764077 
PubMed: 38444256
DOI: 10.1111/1758-2229.13238
Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding
Strain(s): 3808 
PubMed: 26199191
DOI: 10.1093/gbe/evv137
Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
Strain(s): 3808 
PubMed: 23850284
DOI: 10.1016/j.cub.2013.05.062
Shoji, R., Nkayama, H., Sakai, Y., Mohri, S., Yamada, M. 2008 Evaluation of the ecotoxicity of solid wastes using rapid leaching test and bioassays. J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng. , 43, 1048-1053.
Keywords: Heavy metals; ecotoxicity; organic compounds; rapid leaching test; bioassays
Strain(s): 35 
PubMed: 8569319
DOI: 10.1080/10934520802059995
Shono, M., Hara, Y., Wada, M., Fujii, T. 1996 A sodium pump in the plasma membrane of the marine alga Heterosigma akashiwo. Plant Cell Physiol., 37, 385-388.
Keywords: Heterosigma akashiwo; marine alga; Na+ transport; Na+-APTase [EC]; plasma membrane
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a028957
Shono, M., Wada, M., Fujii, T. 1995 Partial purification of a Na+-ATPase from the plasma membrane of the marine alga Heterosigma akashiwo. Plant Physiol., 108, 1615-1621.
Strain(s): 6 
PubMed: 12228567
DOI: 10.1104/pp.108.4.1615
Silas, S., Makarova, KS., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S.9, Krishnamurthy, SR., Fu, BXH., Hansen, LL., Wang, D., Sullivan, MB., Millard, A., Clokie, MR., Bhaya, D., Lambowitz, AM., Kyrpides, NC., Koonin, EV., Fire, AZ. 2017 On the origin of reverse transcriptase using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires. mBio, 8, e00897-17 (article ID).
Keywords: CRISPR; RNA spacer acquisition; cyanobacteria; deep sequencing; horizontal gene transfer; host-parasite relationship; phylogeny; reverse transcriptase
Strain(s): 39 
PubMed: 28698278
DOI: 10.1128/mBio.00897-17
Simon, A., Glockner, G., Felder, M., Melkonian, M., Becker, B. 2006 EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae). BMC Plant Biol., 6, 2 (article ID).
Strain(s): 476 
PubMed: 16476162
DOI: 10.1186/1471-2229-6-2
Singh, H. W., Wada, R. M., Sherwood, A. R. 2018 Diurnal patterns of airborne algae in the Hawaiian Islands: a preliminary study. Aerobiologia, 34, 363–373.
Keywords: Chlorophyta; Cyanobacteria; Green algae; Trade winds; Universal Plastid Amplicon
Strain(s): 37554105 
DOI: 10.1007/s10453-018-9519-5
Six, C., Finkel, Z. V., Rodriguez, F., Marie, D., Partensky, F., Campbell, D. A. 2008 Contrasting photoacclimation costs in ectotypes of the marine eukayotic picoplankter Ostreococcus. Limnol. Oceanogr., 53, 255-265.
Strain(s): 2674 
DOI: 10.4319/lo.2008.53.1.0255
Škaloud, P., Nemjová, K., Veselá, J., Cˇ erná, K., Neustupa,J. 2011 A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists. Mol. Phylogenet. Evol., 61, 933-943.
Keywords: Biogeography; Evolution; Micrasterias; Morphology; Phylogeny; Protists
Strain(s): 152774777784 
PubMed: 21911067
DOI: 10.1016/j.ympev.2011.08.018
Skjelbred, B., Edvardsen, B., Andersen, T. 2012 Environmental optima for seven strains of Pseudochattonella (Dictyochophyceae, Heterokonta). J. Phycol., 49, 54-60.
Keywords: compensation irradiance; growth rates; light; loss rates; Pseudochattonella; salinity; saturating irradiance; temperature
Strain(s): 670 
PubMed: 27008388
DOI: 10.1111/jpy.12008
Skjelbred, B., Horsberg, T. E., Tollefsen, K. E., Andersen, T., Edvardsen, B. 2011 Toxicity of the ichthyotoxic marine flagellate Pseudochattonella (Dictyochophyceae, Heterokonta) assessed by six bioassays. Harmful Algae, 10, 144-154.
Keywords: Bioassays; Cytotoxicity assays; Fish exposure; Ichthyotoxicity; Pseudochattonella
Strain(s): 670 
DOI: 10.1016/j.hal.2010.08.007
Smith, D. R. & Craig, R. J. 2021 Does mitochondrial DNA replication in Chlamydomonas require a reverse transcriptase? New Phytol., 229, 1192-1195.
Strain(s): 2212 
PubMed: 32936939
DOI: 10.1111/nph.16930
Smith, D. R., Burki, F., Yamada, T., Grimwood, J., Grigoriev, I. V., Van Etten, J. L., Keeling, P. J. 2011 The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One, 6, e23624 (article ID).
Strain(s): 2166 
PubMed: 21887287
DOI: 10.1371/journal.pone.0023624
Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797.
Keywords: Chlamydomonas; Gonium; Pleodorina; Volvox; mitochondrion; chloroplast
Strain(s): 1363 
PubMed: 23300255
DOI: 10.1093/molbev/mst002
Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.
Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution
Strain(s): 763 
PubMed: 25017510
DOI: 10.1016/j.ympev.2014.07.001
Smith, D. R., Lee, R. W. 2010 Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol. Biol. Evol., 27, 2244-2256.
Keywords: genetic diversity; mitochondrial genome; plastid genome; Chlamydomonas reinhardtii; green algae; genome architecture
Strain(s): 397398 
PubMed: 20430860
DOI: 10.1093/molbev/msq110
Snell, T. W. & Boyer, E. M. 1988 Thresholds for mictic female production in the rotifer Brachionus plicatilis (muller). J. Exp. Mar. Biol. Ecol., 124, 73-85.
Keywords: food level; mixis; population density threshold; reproduction; rotifer; sex
Strain(s): 2258 
DOI: 10.1016/0022-0981(88)90112-8
Soma, Y., Imaizumi, T., Yagi, K., Kasuga, S. 1993 Estimation of algal succession in lake water using HPLC analysis of pigments. Can. J. Fish. Aquat. Sci., 50, 1142-1146.
Strain(s): 44738188104111233234333351 
Song, C., Suzaki, T. 2013 Improved preservation of organelies in Paramecium bursaria by freeze-substitution with glutaraldehyde and osmium tetroxide. J. Electr. Microsc. Technol. Med. Biol., 27, 1-8.
Keywords: Paramecium bursaria; endosymbiosis; cryofixation; ultrastructural preservation; freeze-substitution
Strain(s): 3374 
Song, H., Wang, Q., Liu, X., Hu, Y., Long, J., Liu, G., Hu, Z. 2018 Phylogenic diversity and taxonomic problems of the Dictyosphaerium morphotype within the Parachlorella clade (Chlorellaceae, Trebouxiophyceae). J. Eucaryot. Microbiol., 65, 382-391.
Keywords: Coccoid green algae; ITS; molecular; morphology; SSU
Strain(s): 453 
PubMed: 29080384
DOI: 10.1111/jeu.12482
Soulier, N. & Bryant, D. A. 2020 The structural basis of far-red light absorbance by allophycocyanins. Photosynth. Res., 147, 11–26.
Keywords: Far-red light photoacclimation; Low-light photoacclimation; Photosynthesis; Phycobiliproteins; Phycobilisomes; Phycocyanobilin; Site-directed mutagenesis
Strain(s): 462134 
PubMed: 33058014
DOI: 10.1007/s11120-020-00787-y
Spencer, K. G., Kimpel, D. L., Fisher, M. L., Togasaki, R. K., Miyachi, S. 1983 Carbonic anhydrase in Chlamydomonas reinhardtii II. Requirements for carbonic anhydrase induction. Plant Cell Physiol., 24, 301-304.
Keywords: carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photosynthesis; photosynthetic mutants
Strain(s): 2238 
DOI: 10.1093/pcp/24.2.301
Spoof, L. 2004 High-performance liquid chromatography of microcystins and nodularins, cyanobacterial peptide toxins. PhD thesis, Åbo Akademi University, Turku, Finland, 73 pp.
Strain(s): 107 
Spoof, L., Jaakkola, S., Važić, T., Häggqvist, K., Kirkkala, T., Ventelä, A. M., Kirkkala, T., Svirčev, Z., Meriluoto, J. 2020 Elimination of cyanobacteria and microcystins in irrigation water—effects of hydrogen peroxide treatment. Environ. Sci. Pollut. Res., 27, 8638–8652.
Keywords: Cyanobacteria; Microcystins; Irrigation water; Hydrogen peroxide; Spinach
Strain(s): 107 
PubMed: 31907814
DOI: 10.1007/s11356-019-07476-x
Spoof, L., Neffling, M.-R., Meriluoto, J. 2010 Fast separation of microcystins and nodularins on narrow-bore reversed-phase columns coupled to a conventional HPLC system. Toxicon, 55, 954-964.
Keywords: Microcystins; Nodularins; Fast high-performance liquid; chromatography
Strain(s): 107 
PubMed: 19540867
DOI: 10.1016/j.toxicon.2009.06.015
Srivastava, A., Ko,S-R., Ahn, C-Y., Oh, H-M., Ravi, A. K., Asthana, R. K. 2016 Microcystin biosynthesis and mcyA expression in geographically distinct Microcystis strains under different nitrogen, phosphorus, and boron regimes. Biomed Res. Int., 2016, 5985987 (article ID).
Strain(s): 843 
PubMed: 27803926
DOI: 10.1155/2016/5985987
Starr, R. C. 1968 Cellular differentiation in Volvox. Proc. Natl. Acad. Sci. U. S. A., 59, 1082-1088.
Strain(s): 4128 
PubMed: 5242240
DOI: 10.1073/pnas.59.4.1082
Stawiarski, B., Buitenhuis, ET., Le Quéré, C. 2016 The physiological response of picophytoplankton to temperature and its model representation. Front. Mar. Sci., 3, 164 (article ID).
Strain(s): 258826932886 
DOI: 10.3389/fmars.2016.00164
Steffen, M. M., Davis, T. W., McKay, R. M. L., Bullerjahn, G. S., Krausfeldt, L. E., Stough, J. M. A., Neitzey, M. L., Gilbert, N. E., Boyer, G. L., Johengen, T. H., Gossiaux, D. C., Burtner, A. M., Palladino, D., Rowe, M. D., Dick, G. J., Meyer, K. A., Levy, S., Boone, B. E., Stumpf, R. P., Wynne, T. T., Zimba, P. V., Gutierrez, D., Wilhelm, S. W. 2017 Ecophysiological Examination of the Lake Erie Microcystis Bloom in 2014: Linkages between Biology and the Water Supply Shutdown of Toledo, OH. Environ. Sci. Technol., 51, 6745–6755.
Strain(s): 843 
PubMed: 28535339
DOI: 10.1021/acs.est.7b00856
Steffen, M. M., Dearth, S. P., Dill, B. D., Li, Z., Larsen, K. M., Campagna, S. R., Wilhelm, S. W. 2014 Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis. ISME J., 8, 2080-2092.
Keywords: cyanobacteria; metabolomics; nitrogen; transcriptomics; transposase; urea
Strain(s): 843 
PubMed: 24858783
DOI: 10.1038/ismej.2014.78
Steinbrenner, J. & Linden, H. 2001 Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol., 125, 810-817.
Strain(s): 144 
PubMed: 11161038
DOI: 10.1104/pp.125.2.810
Steinbrenner, J. & Linden, H. 2003 Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol. Biol., 52, 343-356.
Keywords: astaxanthin; carotenoid biosynthesis; green algae; Haematococcus pluvialis; lycopene βcyclase; redox regulation
Strain(s): 144 
PubMed: 12856941
DOI: 10.1023/A:1023948929665
Steinbrenner, J. & Sandmann, G. 2006 Transformation of the green alga Haematococcus pluvialis with a phytoene desaturase for accelerated astaxanthin biosynthesis. Appl. Environ. Microbiol., 72, 7477-7484.
Strain(s): 144 
PubMed: 17012596
DOI: 10.1128/AEM.01461-06
Štenclová, L. & Fučíková, K. 2019 Dispora speciosa, a new addition to the genus Parallela and the first coccoid member of the family Microsporaceae. Phytotaxa, 419, 10.1016/j.scitotenv.2019.134596
Keywords: 18S rRNA; atpB; epitype; phylogeny; psaB; TEM; rbcL
Strain(s): 394 
DOI: 10.11646/phytotaxa.419.1.4
Stern, R. F., Horak, A., Andrew, R. L., Coffroth, M.-A., Andersen, R. A., Küpper, F. C., Jameson, I., Hoppenrath, M., Véron, B., Kasai, F., Brand, J., James, E. R., Keeling, P. J. 2010 Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One, 5, e13991 (article ID).
Strain(s): 1367 
PubMed: 21085582
DOI: 10.1371/journal.pone.0013991
Steudel, B., Hallmann, C., Lorenz, M., Abrahamczyk, S., Prinz, K., Herrfurth, C., Feussner, I., Martini, J. W., Kessler, M. 2016 Contrasting biodiversity–ecosystem functioning relationships in phylogenetic and functional diversity. New Phytol., 212, 409-420.
Keywords: algae; allelopathy; biodiversityeffects; chemical compounds; productivity; species richness
Strain(s): 4282 
PubMed: 27301904
DOI: 10.1111/nph.14054
Steudel, B., Hector, A., Friedl, T., Löfke, C., Lorenz, M., Wesche, M., Kessler, M., Gessner, M. 2012 Biodiversity effects on ecosystem functioning change along environmental stress gradients. Ecol. Lett., 15, 1397-1405.
Strain(s): 4282 
PubMed: 22943183
DOI: 10.1111/j.1461-0248.2012.01863.x
Stockenreiter, M., Graber, A. K., Haupt, F., Stibor, H. 2012 The effect of species diversity on lipid production by micro-algal communities. J. Appl. Phycol., 24, 45-54.
Keywords: Biofuel; Complementarity; Diversity; Lipid; Micro-algae; Resource-use efficiency
Strain(s): 4282 
DOI: 10.1007/s10811-010-9644-1
Stockenreiter, M., Haupt, F., Graber, A. K., Seppälä, J., Spilling, K., Tamminen, T., Stibor, H. 2013 Functional group richness: implications of biodiversity for light use and lipid yield in microalgae. J. Phycol., 49, 838-847.
Keywords: Algal neutral lipids; Biofuel; Diversity; Functional groups; Light use; Nile Red; PAR absorbance; Phytoplankton; Resource-use-efficiency; Species richness
Strain(s): 4282 
PubMed: 27007310
DOI: 10.1111/jpy.12092
Stough, JMA., Tang, X., Krausfeldt, LE., Steffen, MM., Gao, G., Boyer, GL., Wilhelm, SW 2017 Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events. PLoS One, 12, e0184146 (article ID).
Strain(s): 843 
PubMed: 28873456
DOI: 10.1371/journal.pone.0184146
Su, D., Yang, L., Shi, X., Ma, X., Zhou, X., Hedges, S. B., Zhong, B. 2021 Large-scale phylogenomic analyses reveal the monophyly of bryophytes and Neoproterozoic origin of land plants. Mol. Biol. Evol., 38, 3332–3344.
Keywords: Land plants; bryophytes; phylogeny; timescale; maximum bounds
Strain(s): 160616111638 
PubMed: 33871608
DOI: 10.1093/molbev/msab106
Su, Y., Wang, J., Shi, M., Niu, X., Yu, X., Gao, L., Zhang, X., Chen, L., Zhang, W. 2014 Metabolomic and network analysis of astaxanthin-producing Haematococcus pluvialis under various stress conditions. Bioresour. Technol., 170, 522-529.
Keywords: Astaxanthin; Stress; Metabolomics; Metabolic network; Haematococcus pluvialis
Strain(s): 144 
PubMed: 25164345
DOI: 10.1016/j.biortech.2014.08.018
Suda, K., Tanji, K., Hori, K., Unno, H. 1999 Evidence for a novel Chlorella virus -encoded alginate lyase. FEMS Microbiol. Lett., 180, 45-53.
Keywords: Chlorella; virus; alginate lyase; lysis
Strain(s): 6868432170 
PubMed: 10547443
DOI: 10.1111/j.1574-6968.1999.tb08776.x
Suda, S. 2003 Light microscopy and electron microscopy of Nephroselmis spinosa sp. nov. (Prasinophyceae, Chlorophyta). J. Phycol., 39, 590-599.
Keywords: morphology; Nephroselmis spinosa; Prasinophyceae; scale morphology; taxonomy; ultrastructure
Strain(s): 934935 
DOI: 10.1046/j.1529-8817.2003.01194.x
Suda, S. & Watanabe, M. M. 1995 Life cycle of Pseudocarteria mucosa (Korschikov) Ettl (Volvocales, Chlorophyta). Phycologia, 34, 58-64.
Strain(s): 523 
DOI: 10.2216/i0031-8884-34-1-58.1
Suda, S. & Watanabe, M. M. 1995 Notes on microalgae in Japan (2). Hafniomonas montana (Geitler) Ettl et Moestrup (Chlorophyceae, Dunaliellales). Jpn. J. Phycol. (Sôrui), 43, 40-41 (in Japanese with English title).
Strain(s): 257 
Suda, S., Bhuiyan, M. A. H., Faria, D. G. 2013 Genetic diversity of Pyramimonas from Ryukyu Archipelago, Japan (Chlorophyceae, Pyramimonadales). J. Mar. Sci. Tech., 21, 285-296.
Keywords: Pyramimonas; nuclear SSU rDNA; genetic diversity; Ryukyu Archipelago
Strain(s): 221251255339233933394339633973398339934013403340534073408341134133414341634173418 
DOI: 10.6119/JMST-013-1220-16
Suda, S., Nozaki, H., Watanabe, M. M. 2005 Morphology and sexual reproduction of Carteria palmata sp. nov. belonging to the Carteria group I sensu Lembi (Chlorophyceae, Volvocales). Phycologia, 44, 596-607.
Strain(s): 133613371338 
DOI: 10.2216/0031-8884(2005)44[596:MASROC]2.0.CO;2
Suda, S., Watanabe, M. M., Inouye, I. 1989 Evidence for sexual reproduction in the primitive green alga Nephroselmis olivacea (Prasinophyceae). J. Phycol., 25, 596-600.
Strain(s): 483485 
DOI: 10.1111/j.1529-8817.1989.tb00266.x
Suda, S., Watanabe, M. M., Inouye, I. 1990 Morphological observations on the rare quadriflagellate Pseudocarteria mucosa (Chlorophyceae, Volvocales). Phycologia, 29, 54-64.
Strain(s): 522523524 
DOI: 10.2216/i0031-8884-29-1-54.1
Suda, S., Watanabe, M. M., Inouye, I. 2004 Electron microscopy of sexual reproduction in Nephroselmis olivacea (Prasinophyceae, Chlorophyta). Phycol. Res., 52, 273-283.
Keywords: electron microscopy; endoplasmic reticulum; germination; Nephroselmis olivacea; Prasinophyceae; sexual reproduction; zygote formation; zygote wall
Strain(s): 483485 
DOI: 10.1111/j.1440-183.2004.00346.x
Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595.
Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy
Strain(s): 204205207594595596610844845846847905911912913915916917918 
PubMed: 12361260
DOI: 10.1099/00207713-52-5-1577
Suda, T., Hata, T., Kawai, S., Okamura, H., Nishida, T. 2012 Treatment of tetracycline antibiotics by laccase in the presence of 1-hydroxybenzotriazole. Bioresour. Technol., 103, 498-501.
Keywords: Tetracycline antibiotics; Bacterial growth inhibition; Algal growth inhibition; Laccase; 1-Hydroxybenzotriazole
Strain(s): 35 
PubMed: 22071243
DOI: 10.1016/j.biortech.2011.10.041
Sudo, R., Tai, S., Yagi, O., Okada, M., Hosomi, M., Yamane, A. N. 1981 Comprehensive studies on the eutrophication of fresh-water areas. Determination of algal growth potential by algal assay procedure. Res. Rep. Natl. Inst. Environ. Stud., No. 26, 1-53 (in Japanese with English title).
Strain(s): 35 
Sugahara, K., Kobayashi, Y., Watanabe, M. M., Watanabe, M. 1982 Changes in cellular contents of ATP during growth of red tide algae. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 323-327 (in Japanese with English summary).
Strain(s): 6 
Sugasawa, M., Matsuzaki, R., Arakaki, Y., Nozaki, H. 2015 Morphology and phylogenetic position of a rare four-celled green alga, Pascherina tetras (Volvocales, Chlorophyceae), based on cultured material. Phycologia, 54, 342-348.
Keywords: Culture strain; Molecular phylogeny; Morphology; Multicellularity; Spondylomoraceae; Ultrastructure
Strain(s): 37493750 
DOI: 10.2216/15-27.1
Sugasawa, M., Matsuzaki, R., Kawafune, K., Takahashi, T., Kawachi, M., Krientiz, L., Nozaki, H. 2015 Taxonomic study of Pyrobotrys (Spondylomoraceae, Chlorophyceae) based on comparative morphological and molecular analyses of culture strains established using novel methods. Cytologia, 80, 513-524.
Keywords: Molecular phylogeny; Morphology; Pyrobotrys; Pyrobotrys elongata; Spondylomoraceae; Stigma; Taxonomy; Ultrastructure
Strain(s): 3768376937703771377237733774 
DOI: 10.1508/cytologia.80.513
Sugawara, K., Fujibayashi, M., Okano, K., Enda, Y., Ichinoseki, S., Taniguchi, Y., Miyata, N. 2021 Assimilation of cyanobacteria by the freshwater bivalve Nodularia douglasiae: Insights from long-term laboratory and field feeding experiments. J. Water Environ. Technol., 19, 74-84.
Keywords: filter-feeder; cyanobacterial bloom; dietary utilization; stable isotope; fatty acids
Strain(s): 44 
DOI: 10.2965/jwet.20-148
Sugaya, Y., Yasuno, M., Yanai, T. 1990 Effects of toxic Microcystis viridis and isolated toxins on goldfish. Jpn. J. Limnol., 51, 149-153.
Keywords: fish; hepatotoxin; Microcystis; hemorrhage
Strain(s): 102 
Sugihara, S., Ozaki, T., Tojo, T., Endo, H., Saito, T., Takimura, Y. 2019 Identification of novel 3-ketoacyl-acyl carrier protein synthase involved in producing medium chain fatty acids from microalgae. Bioresour. Technol. Reports, 7, 100184 (article ID).
Keywords: 3-ketoacyl ACP synthase; Medium chain fatty acid; Microalgae; Nannochloropsis
Strain(s): 2145 
DOI: 10.1016/j.biteb.2019.03.016
Sugiura, N., Iwami, N., Itayama, T., Inamori, Y. 1997 Population dynamics of grazer Monas guttula and prey Microcystis viridis using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 20, 332-337.
Keywords: disappearance process; grazer; Microcystis; microflagellate; large scale microcosm
Strain(s): 102 
Sugiyama, K., Ebisawa, M., Yamada, M., Nagashima, Y., Suzuki, H., Maoka, T., Takaichi, S. 2017 Functional lycopene cyclase (CruA) in cyanobacterium, Arthrospira platensis NIES-39, and its role in carotenoid synthesis. Plant Cell Physiol., 58, 831-838.
Keywords: Arthrospira; Carotenoid; Lycopene cyclase; crtR; cruA; β-Carotene hydroxylase
Strain(s): 39 
PubMed: 28371918
DOI: 10.1093/pcp/pcx015
Sugiyama, K., Takahashi, K., Nakazawa, K., Yamada, M., Kato, S., Shinomura, T., Nagashima, Y., Suzuki, H., Ara, T., Harada, J., Takaichi, S. 2020 Oxygenic phototrophs need ζ-carotene isomerase (Z-ISO) for carotene synthesis: Functional analysis in Arthrospira and Euglena. Plant Cell Physiol., 61, 276–282.
Keywords: Arthrospira; CarotenoidEuglena; Oxygenic phototrophs; Z-ISO; ζ-carotene isomerase
Strain(s): 39 
PubMed: 31593237
DOI: 10.1093/pcp/pcz192
Sugiyama, T., Matsumoto, C., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. VII. Ribulose-1,5-diphosphate carboxylase of Chlorella ellipsoidea. Arch. Biochem. Biophys., 129, 597-602.
Strain(s): 2170 
PubMed: 4975142
DOI: 10.1016/0003-9861(69)90219-7
Sumiya, N. 2021 Coordination mechanism of cell and cyanelle division in the glaucophyte alga Cyanophora sudae. Protoplasma, 259, 855–867.
Keywords: Cyanelle division; Glaucophyte; Cell cycle; Cyanophora
Strain(s): 764 
PubMed: 34553240
DOI: 10.1007/s00709-021-01704-3
Sumiya, N. , Hirata, A., Kawano, S. 2008 Multiple FtsZ ring formation and reduplicated chloroplast DNA in Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae) under phosphate-enriched culture. J. Phycol., 44, 1476-1489.
Keywords: chloroplast division; chloroplast DNA replication; FtsZ ring; Nannochloris bacillaris; phosphate-enriched culture
Strain(s): 4016 
DOI: 10.1111/j.1529-8817.2008.00589.x
Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID).
Keywords: chloroplast division; algal cell cycle; Cyanidioschyzon merolae; Cyanophora paradoxa
Strain(s): 5473377 
PubMed: 27837024
DOI: 10.1073/pnas.1612872113
Sumiya, N., Yamazaki, T., Owari, S., Yamamoto, M., Watanabe, K., Kawano, S. 2012 Chloroplast division and differentially regulated expression of FtsZ1 and FtsZ2 in the synchronous culture of Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae). J. Phycol., 77, 59-66.
Keywords: Chloroplast division; Nannochloris bacillaris; FtsZ ring formation; FtsZ1; FtsZ2
Strain(s): 4016 
DOI: 10.1508/cytologia.77.59
Sun, B.-K., Tanji, Y., Unno, H. 2005 Influences of iron and humic acid on the growth of the cyanobacterium Anabaena circinalis. Biochem. Eng. J., 24, 195-201.
Keywords: cyanobacteria; Anabaena circinalis; iron limitation; humic acid
Strain(s): 41 
DOI: 10.1016/j.bej.2005.02.014
Sun, B.-K., Tanji, Y., Unno, H. 2006 Extinction of cells of cyanobacterium Anabaena circinalis in the presence of humic acid under illumination. Appl. Microbiol. Biotechnol., 72, 823-828.
Strain(s): 41 
PubMed: 16505991
DOI: 10.1007/s00253-006-0327-4
Sun, H., Wu, T., Chen, H Y., Ren, Y., Yang, S., Huang, J., Mou, H., Chen, F. 2021 Powerful tools for productivity improvements in microalgal production. Renew. Sust. Energ. Rev., 152, 111609 (article ID).
Keywords: Microalgal production; Productivity improvement; Kinetic model; Metabolic flux analysis; Genetic tool; Lipid biosynthesis
Strain(s): 14421402146 
DOI: 10.1016/j.rser.2021.111609
Sun, L. W., Jiang, W. J.4, Zhang, J. Y., Wang, W. Q., Du, Y., Sato, H., Kawachi, M., Yu, R. 2018 Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS. Environ. Monit. Assess., 190, 712 (article ID).
Keywords: Microcystis aeruginosa; MALDI-TOFMS; Cyanobacterial bloom; Ribosomal protein
Strain(s): 2062308431639 
PubMed: 30415457
DOI: 10.1007/s10661-018-7093-5
Sun, L., Chin, W. C., Chiu, M. H., Xu, C., Lin, P., Schwehr, K. A., Quigg, A., Santschi, P. H. 2019 Sunlight induced aggregation of dissolved organic matter: Role ofproteins in linking organic carbon and nitrogen cycling in seawater. Sci. Total Environ., 654, 872-877.
Keywords: Protein; Photo-flocculation; ROS; DOM
Strain(s): 4392 
PubMed: 30453257
DOI: 10.1016/j.scitotenv.2018.11.140
Sun, L., Zhang, W., Li, B., Tan, X., Zhang, Z., Hong, W. 2022 Study on treatment of cyanobacterial bloom by UV-C/KMnO4 advanced oxidation. Environ. Resour. Ecol. J., 6, 10-15.
Keywords: UV-C/KMnO4; Advanced Oxidation; Cyanobacterial Bloom
Strain(s): 843 
DOI: 10.23977/erej.2022.060202
Sun, L.W., Jiang, W.J., Sato, H., Kawachi, M., Lu, X.W. 2016 Rapid classification and identification of Microcystis aeruginosa strains using MALDI-TOF MS and polygenetic analysis. PLoS One, 11, e0156275 (article ID).
Strain(s): 44878889901001011041051071091111124786048439011043105310581061106810691070107210761077108510941099110111041105111311151126113411351144115111571170121112131215121612171218122212241230123212331239 
PubMed: 27227555
DOI: 10.1371/journal.pone.0156275
Sun, P., Cheng, K-W., He, Y., Liu, B., Mao, X., Chen, F. 2018 Screening and identification of inhibitors of advanced glycation endproduct formation from microalgal extracts. Food Funct., 9, 1683-1691.
Strain(s): 144 
PubMed: 29473927
DOI: 10.1039/C7FO01840A
Sung, Y. J., Joun, J., Yu, B. S., Sim, S. J. 2023 Chapter 10 - Photobioreactor systems for production of astaxanthin from microalgae. In Current Developments in Biotechnology and Bioengineering. Photobioreactors : Design and Applications, Sirohi, R., Pandey, A., Sim, S., Chang, J.-S., Lee, D.-J., Elsevier pp. 229-246.
Strain(s): 144 
DOI: 10.1016/B978-0-323-99911-3.00005-1
Suradkar, A., Villanueva, C., Gaysina, LA., Casamatta, DA., Saraf, A., Dighe, G., Mergu, R., Singh, P. 2017 Nostoc thermotolerans sp. nov., a soil-dwelling species of Nostoc (Cyanobacteria). Int. J. Syst. Evol. Microbiol., 67, 1296-1305.
Keywords: cyanobacteria; Taxonomy; Nostoc
Strain(s): 2140503756 
PubMed: 28109209
DOI: 10.1099/ijsem.0.001800
Suruzzaman, M., Cao, T., Lu, J., Wang, Y., Su, M., Yang, M. 2022 Evaluation of the MIB-producing potential based on real-time qPCR in drinking water reservoirs. Environ. Res., 204, 112308 (article ID).
Keywords: 2-Methylisoborneol (MIB); Taste & odor; Real time qPCR; MIB-Synthesis (mic) gene; Drinking water
Strain(s): 5124062406342374238 
PubMed: 34757030
DOI: 10.1016/j.envres.2021.112308
Susanti, H., Yoshida, M., Nakayama, T., Nakada, T., Watanabe, M. M. 2020 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. Phytotaxa, 432, 65-80.
Keywords: Taxonomy; reassesment; Chlamydomonas meslinii; Paludistella; Algae
Strain(s): 43174318 
DOI: 10.11646/phytotaxa.432.1.6
Susilaningsih, D. 2007 Accelerating of pink pigment excretion from cyanobacterium Oscillatoria by Co-Cultivation with Anabaena. HHAYATI J. Biosci., 14, 18-22.
Keywords: Oscillatoria; Anabaena variabilis; biosurfactant; cyanobacterium; pink pigment
Strain(s): 192344422 
Suzuki, E., Tsuzuki, M., Miyachi, S. 1986 Accumlation of inorganic carbon in the cells of Euglena gracilis Z grown photoautotrophically in ordinary air. Plant Cell Physiol., 27, 1205-1208.
Keywords: Euglena gracilis Z; intracellular inorganic carbon accumulation; photosynthesis
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a077207
Suzuki, E., Tsuzuki, M., Miyachi, S. 1987 Photosynthetic characteristics of chloroplasts isolated from Euglena gracilis Z grown photoautotrophically. Plant Cell Physiol., 28, 1377-1388.
Keywords: carbon dioxide concentration; Euglena gracilis Z; isolated chloroplast; photoautotrophic growth; photosynthetic carbon fixation
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a077429
Suzuki, K., Mitra, S., Iwata, O., Ishikawa, T., Kato, S., Yamada, K. 2015 Selection and characterization of Euglena anabaena var. minor as a new candidate Euglena species for industrial application. Biosci. Biotechnol. Biochem., 79, 1730-1736.
Keywords: Euglena anabaena var. minor; Euglena gracilis; paramylon
Strain(s): 483745 
PubMed: 25988946
DOI: 10.1080/09168451.2015.1045828
Suzuki, K., Miyachi, S., Tamiya, H. 1952 Changes of the capacity of dark reduction of carbon dioxide during the normal growth cycle of Chlorella ellipsoidea. In Annual Report of the Research Committee on the Application of Artificial Radioactive Isotopes in Japan, Vol. 2, Part 1, pp. 67-70.
Strain(s): 2170 
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017 Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris. J. Appl. Electrochem., 47, 197-203.
Keywords: Titanium dioxide; Photocatalyst; Anti-algal effect; Hydrogen peroxide
Strain(s): 227 
DOI: 10.1007/s10800-016-1031-4
Suzuki, R. & Fujita, Y. 1972 Studies on the Hill reaction of membrane fragments of blue-green algae II. The reaction steps inactivated at high water concentration. Plant Cell Physiol., 13, 427-436.
Strain(s): 1923 
Suzuki, S., Kataoka, T., Watanabe, T., Yamaguchi, H., Kuwata, A., Kawachi, M. 2019 Depth-dependent transcriptomic response of diatoms during spring bloom in the western subarctic Pacifc Ocean. Sci Rep, 9, 14559 (article ID).
Strain(s): 4227 
PubMed: 31601926
DOI: 10.1038/s41598-019-51150-8
Suzuki, S., Kawachi, M., Tsukakoshi, C., Nakamura, A., Hagino, K., Inouye, I., Ishida, K. 2021 Unstable relationship between Braarudosphaera bigelowii (= Chrysochromulina parkeae) and its nitrogen-fixing endosymbiont. Front. Plant Sci., 12, 749895 (article ID).
Keywords: nitrogen fixation; endosymbiosis; haptophyte; UCYN-A; reductive evolution
Strain(s): 38654442 
PubMed: 34925404
DOI: 10.3389/fpls.2021.749895
Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M. 2022 What happend before losses of photosynthesis in Cryptophyte algae? Mol. Biol. Evol., 39, msac001 (article ID).
Keywords: cryptophyte; Cryptomonas borealis: genome evolution; mixotrophy; photosynthetic loss
Strain(s): 276281345348698703715100510061327137517302331233227163952 
PubMed: 35079797
DOI: 10.1093/molbev/msac001
Suzuki, S., Ota, S., Yamagishi, T., Tuji, A., Yamaguchi, H., Kawachi, M. 2022 Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure. DNA Res., 29, dsac037 (article ID).
Keywords: Mayamaea pseudoterrestris; ecotoxicological test; metal toxicity; gliding motility; oxidative stress
Strain(s): 4280 
PubMed: 36197113
DOI: 10.1093/dnares/dsac037
Suzuki, S., Tazawa, R., Miya, A., Adachi, T., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae. I. Studies on species and culture condition. CELSS J., 7, 23-28 (in Japanese with English summary).
Keywords: microalgae; Spirulina; SOT medium; culture condition; CO2/O2 gas exchange system
Strain(s): 394546 
Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol. Resour. Ann.., 8, e00605-19 (article ID).
Strain(s): 809051949 
PubMed: 31649090
DOI: 10.1128/MRA.00605-19
Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 The draft genome of a hydrogen-producing cyanobacterium, Arthrospira platensis NIES-46. J. Genomics, 7, 56-59.
Keywords: Arthrospira platensis NIES-46; filamentous cyanobacterium; genome; hydrogen production; phylogeny; Spirulina
Strain(s): 46 
PubMed: 31588248
DOI: 10.7150/jgen.38149
Suzuki, S., Yamaguchi, H., Kawachi, M. 2022 Potential genetic diversity of Synechococcus-related strains maintained in the Microbial Culture Collection of the National Institute for Environmental Studies, Japan. Microb. Resour. Syst., 38, 63-74.
Keywords: Synechococcus; Cyanobium; picoplankton; molecular marker
Strain(s): 93793893994094194294394594694794995095195295395495595695795895996096196296396496596997097197297397497597697797897998198298398498598698798813411342134313441345134613471348 
Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M. 2018 Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Sci Rep, 8, 8058 (article ID).
Strain(s): 35 
PubMed: 29795299
DOI: 10.1038/s41598-018-26331-6
Suzuki, T., Ezure, T., Ishida, M. 1998 In-vitro antitumour evaluation of extracts from cyanobacteria Anabaena. J. Pharm. Pharmacol., 50, 136 (Supplement).
Strain(s): 1920932094 
DOI: 10.1111/j.2042-7158.1998.tb02336.x
Suzuki, T., Imai, M., Ishida, M. 1997 Influence of environmental factors on phosphorous content in the marine microalga Dunaliella. Toxicol. Environ. Chem., 64, 173-181.
Keywords: Dunaliella; photosynthesis; polyphosphates; response surface model
Strain(s): 225422572258 
DOI: 10.1080/02772249709358547
Suzuki, T., Matsuo, T., Ohtaguchi, K., Koide, K. 1995 Gas-sparged bioreactors for CO2 fixation by Dunaliella tertiolecta. J. Chem. Tech. Biotechnol., 62, 351-358.
Strain(s): 2258 
DOI: 10.1002/jctb.280620407
Suzuki, T., Nakasato, K., Shapiro, S., Pomati, F., Neilan, B. A. 2004 Effects of synthetic local anaesthetics on the growth of the cyanobacterium Synechococcus leopoliensis. J. Appl. Phycol., 16, 145-152.
Keywords: anaesthetics; auxins; cell growth; cyanobacteria; cytokinins; phytohormones; principal component; analysis; Synechococcus leopoliensis
Strain(s): 3277 
DOI: 10.1023/B:JAPH.0000044776.04977.00
Suzuki, T., Ohtaguchi, K., Koide, K. 1993 Cell growth inhibition in mouse leukemia L5178Y cells in vitro by crude extracts from freshwater blue-green algae. J. Chem. Eng. Japan, 26, 463-464.
Strain(s): 21163277 
DOI: 10.1252/jcej.26.463
Suzuki, T., Watanabe, R., Uchida, H., Matsushima, R., Nagai, H., Yasumoto, T., Yoshimatsu, T., Sato, S., Adachi, M. 2012 LC-MS/MS analysis of novel ovatoxin isomers in several Ostreopsis strains collected in Japan. Harmful Algae, 20, 81-91.
Keywords: Novel ovatoxin isomers; Ostreopsis; Palytoxin analogues; LC-MS/MS
Strain(s): 3351 
DOI: 10.1016/j.hal.2012.08.002
Suzuki, Y., Johuchi, T., Saijo, H., Takahashi, K., Ashitani, T. 2020 Inhibition of the harmful alga Microcystis aeruginosa by sugi (Cryptomeria japonica) bark. J. Wood Sci., 66, 75 (article ID).
Keywords: Woody wastes; Extract; Algal bloom; Allelopathy; Lake environment
Strain(s): 87 
DOI: 10.1186/s10086-020-01921-z
Suzuki, Y., Saijo, H., Takahashi, K., Kofujita, H., Ashitani, T. 2018 Growth-inhibitory components in Sugi (Cryptomeria japonica) extracts active against Microcystis aeruginosa. Cogent Environ. Sci., 4, 1466401 (article ID).
Keywords: algal bloom; Japanese cedar; terpenoid; flavonoid, Cyanobacteria
Strain(s): 87 
DOI: 10.1080/23311843.2018.1466401
Szewczyk, S., Abram, M., Białek, R., Haniewicz, P., Karolczak, J., Gapiński, J., Kargul, J., Gibasiewicz, K. 2020 On the nature of uncoupled chlorophylls in the extremophilic photosystem I-light harvesting I supercomplex. Biochim. Biophys. Acta-Bioenerg., 1861, 148136 (article ID).
Keywords: Biosolar photovoltaic cells; Photosystem I; Light harvesting complex I; Uncoupled chlorophylls; Time-resolved fluorescence; Fluorescence correlation spectroscopy
Strain(s): 1332 
PubMed: 31825811
DOI: 10.1016/j.bbabio.2019.148136
Sakamoto, M. & Kashiwada, S. 2020 Toxicity of silver nanocolloids to Raphidocelis subcapitata. Jpn. J. Environ. Toxicol., 23, 63-66 (in Japanese with English summary).
Strain(s): 35 
DOI: 10.11403/jset.23.63
Sakai, M., Hosoda, A., Kanazawa, S. 2003 Isolation and characterization of two cyanobacteria-lytic bacterial strains from the submerged paddy soil. J. soci. soil. microbiol., 57, 21-28 (in Japanese with English summary).
Keywords: Cyanobacteria; Lytic bacteria; Paddy field; Anabaena
Strain(s): 192337 
DOI: 10.18946/jssm.57.1_21
Sako, Y. 2019 Ecophysiological studies of marine microorganisms by genome information. Nippon Suisan Gakkaishi, 85, 281-290 (in Japanese).
Strain(s): 1712293559603670 
DOI: 10.2331/suisan.WA2633
Shoji, R., Okita, N., nakanishi, H. 2013 Analysis of the effects of humic acid extracter from the Tama River sediment on the Pseudokirchneriella subcapitata growth inhibition by copper by NICA (non-ideal competitive adsorption)-Donnan model. J. Jpn. Soc. Wat. Environ., 36, 1-9 (in Japanese with English summary).
Keywords: River sediment; Ecotoxicity; Heavy metal
Strain(s): 35 
DOI: 10.2965/jswe.36.1
Shiraiwa, Y., Inouye, I., Ishida, K. 2014 放射性同位元素の除去剤および除去方法 In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Tokukai2014-6051, 30 pp.
Strain(s): 2854285528562857285828592860 
Sasao, A., Matsuo, H., Tanaka, Y. 2001 Inhibitory effect of tea (Camellia sinessis (L.) O.Kuntze var. sinensis) liquor / extract on blue-green algal growth. Jpn. J. Limnol., 62, 115-122 (in Japanese with English summary).
Keywords: tea; M. aeruginosa; growth inhibitor; tannic acid
Strain(s): 35 
DOI: 10.3739/rikusui.62.115
Shinohara, A., Imai, A., Komatsu, K., Matsushige, K., Nara, F. 2008 Application of HPLC-PAD to highly sensitive analysis of dissolved carbohydrates and theit composition in lake water and extracellular organic matter derived from algae. J. Jpn. Soc. Wat. Environ., 31, 447-454 (in Japanese with English summary).
Keywords: carbohydrates; DOM; HPLC-PAD; lake water; algal culture
Strain(s): 4474204 
DOI: 10.2965/jswe.31.447
Shikata, T., Sakurada, K., Jomoto, Y., Oyama, N., Onji, M., Yoshida, M., Ohwada, K. 2011 Growth dynamics of Chattonella antiqua in relation to nutrients in the Yatsushiro Sea. Nippon Suisan Gakkaishi, 77, 40-52 (in Japanese with English summary).
Keywords: Chattonella; red tide; nutrient; nitrogen; iron; bioassay; Yatsushiro Sea; phosphate
Strain(s): 1 
DOI: 10.2331/suisan.77.40
Suzuki, Y. & Hirayama, S. 2019 Development of rapid and simple bioassay using seaweed Pyropia yezoensis.. J. JIME, 54, 898-904 (in Japanese with English summary).
Strain(s): 16 
DOI: 10.5988/jime.54.898
Sekimoto, H. 2012 Speciation and reproductive isolation in unicellular charophycean alga, Closterium peraceroum-strigosum-littorale complex. IFO Res. Commun., 26, 71-85 (in Japanese with English summary).
Keywords: Closterium: heterothallism; homothallism; reproductive isolation; sex pheromone
Strain(s): 58596061626364656768697026145484551 
Suda, S. 2008 Isolation, cultivation and phylogenetic studies of microalgae, particularly prasinophytes from coastal waters of the Nansei Islands, Japan. IFO Res. Commun., 22, 53-62 (in Japanese with English summary).
Keywords: microalgae; picoeukaryotic plankton; prasinophytes; Ryukyu Islands; zooxanthellae
Strain(s): 25272528252925302531 

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