Search Reference

Rademacher, N., Wrobel, T. J., Rossoni, A. W., Kurz, S., Bräutigam, A., Weber, A. P. M., Eisenhut, M. 2017 Transcriptional response of the extremophile red alga Cyanidioschyzon merolaee to changes in CO2 concentrations. J. Plant Physiol., 217, 49-56.
Keywords: Cyanidioschyzon merolae; RNA-seq; CO2 limitation; Photorespiration
Strain(s): 3377 
PubMed: 28705662
DOI: 10.1016/j.jplph.2017.06.014
Rahman, D. Y, Sarian, F. D., van WijkM, A., Martinez-Garcia, M., van der Maarel, M. J. E. C. 2017 Thermostable phycocyanin from the red microalga Cyanidioschyzon merolae, a new natural blue food colorant. J. Appl. Phycol., 29, 1233–1239.
Keywords: Food colorant; Phycocyanin; Pigments; Red microalga; Cyanidioschyzon merolae
Strain(s): 1332 
PubMed: 28572707
DOI: 10.1007/s10811-016-1007-0
Rahman, M. M., Rahaman, M. S., Islam, M. R., Hossain, M. E., Mithi, FM., Ahmed, M., Saldías, M., Akkol, E. K., Sobarzo-Sánchez, E. 2021 Multifunctional therapeutic potential of phytocomplexes and natural extracts for antimicrobial properties. Antibiotics-Basel, 10, 1076 (article ID).
Keywords: natural products; phytocomplexes; antimicrobial activity; alkaloids; tannins; terpenoids
Strain(s): 204 
PubMed: 34572660
DOI: 10.3390/antibiotics10091076
Ramírez-Romero, A., Da Costa Magalhães, B., Dimitriades-Lemaire, A., Sassi, J.-F., Delrue, F., Steyer, J.-P. 2022 Chlorellaceae feedstock selection under balanced nutrient limitation. FERMENTATION, 8, 554 (article ID).
Keywords: biofuel; microalgal biomass; Chlorella; lipids
Strain(s): 2272173 
DOI: 10.3390/fermentation8100554
Ramírez‑Romero, A., Da Costa Magalhães, B., Matricon, L., Sassi, J.-F., Steyer, J.-P., Delrue, F. 2024 Aqueous phase recycling: impact on microalgal lipid accumulation and biomass quality. Environ. Sci. Pollut. Res., ,
Keywords: Renewable feedstock; Hydrothermal liquefaction; Green fuels; Microalgal biomass; Nutrient cycling
Strain(s): 2272173 
PubMed: 38438644
DOI: 10.1007/s11356-024-32701-7
Ramírez-Romero, A., Martin, M., Boyer, A., Bolzoni, R., Matricon, L., Sassi, J.-F., Steyer, J.-P., Delrue, F. 2023 Microalgae adaptation as a strategy to recycle the aqueous phase from hydrothermal liquefaction. Bioresour. Technol., 371, 128631 (article ID).
Keywords: Microalgae adaptation; Adaptive laboratory evolution; Hydrothermal liquefaction; Aqueous phase recycling
Strain(s): 227 
PubMed: 36646358
DOI: 10.1016/j.biortech.2023.128631
Ramya, M., Kayalvizhi, M., Haripriya, G., Rathinasabapathi, P. 2018 Detection of microcystin-producing cyanobacteria in water samples using loop-mediated isothermal amplification targeting mcyB gene. 3 Biotech, 8, 378 (article ID).
Keywords: Microcystin synthetase; LAMP; Microcystin; Cyanobacteria; McyB
Strain(s): 843 
PubMed: 30148028
DOI: 10.1007/s13205-018-1402-0
Ranga Rao, A., Ravishankar, G. A., Sarada, R. 2012 Cultivation of green alga Botryococcus braunii in raceway, circular ponds under outdoor conditions and its growth, hydrocarbon production. Bioresour. Technol., 123, 528-533.
Keywords: Microalgae; Botryococcus braunii; Outdoor cultivation; Hydrocarbon; Fatty acids
Strain(s): 836 
PubMed: 22940364
DOI: 10.1016/j.biortech.2012.07.009
Ranjan, P. & Kateriya, S. 2018 Localization and dimer stability of a newly identifed microbial rhodopsin from apolar, non-motile green algae. BMC Res. Notes, 11, 65 (article ID).
Keywords: Coccomyxa subellipsoidea; Proton-pumping rhodopsin; Optogenetics; Localization of the microbial rhodopsin in eukaryotes; Chlorella vulgaris
Strain(s): 2166 
PubMed: 29361974
DOI: 10.1186/s13104-018-3181-4
Ranjbar, R., Inoue, R., Katsuda, T., Yamaji, H., Katoh, S. 2008 High efficiency production of astaxanthin in an airlift photobioreactor. J. Biosci. Bioeng., 106, 204-207.
Keywords: Haematococcus pluvialis; airlift bubble column; liquid circulation;nirate concentration; astaxanthin
Strain(s): 144 
PubMed: 18804066
DOI: 10.1263/jbb.106.204
Ranjbar, R., Inoue, R., Shiraishi, H., Katsuda, T., Katoh, S. 2008 High efficiency production of astaxanthin by autotrophic cultivation of Haematococcus pluvialis in a bubble column photobioreactor. Biochem. Eng. J., 39, 575-580.
Keywords: Haematococcus pluvialis; autotrophic culture; bubble column; Fed-batch; nitrate concentration astaxanthin
Strain(s): 144 
DOI: 10.1016/j.bej.2007.11.010
Ray, A., Nayak, M., Ghosh, A. 2022 A review on co-culturing of microalgae: A greener strategy towards sustainable biofuels production. Sci. Total Environ., 802, 149765 (article ID).
Keywords: Microalgae-fungi; Microalgae-yeast; Microalgae-bacteria; Co-cultivation; Biomass; Lipid
Strain(s): 227 
PubMed: 34454141
DOI: 10.1016/j.scitotenv.2021.149765
Reeb, V. C., Peglar, M. T., Yoon, H. S., Bai, J. R., Wu, M., Siu, P., Grafenberg, J. L., Reyes-Prieto, A., Rummele, S. E., Gross, J., Bhattacharya, D. 2009 Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists. Mol. Phylogenet. Evol., 53, 202–211.
Keywords: Chromalveolata; Multigene phylogenetics; Plastidophila; Rhizaria; Supergroup; Tree of life
Strain(s): 13341335 
PubMed: 19398025
DOI: 10.1016/j.ympev.2009.04.012
Reichert,M., Bergmann,S. M., Hwang, J., Buchholz, R., Lindenberger, C. 2017 Antiviral activity of exopolysaccharides from Arthrospira platensis against koi herpesvirus. J. Fish Dis., 40, 1441–1450.
Keywords: antiviral substances; exopolysaccharides; KHVD; koi herpesvirus
Strain(s): 39 
PubMed: 28422294
DOI: 10.1111/jfd.12618
Reid, E. L., Worthy, C. A., Probert, I., Ali, S.T., Love, J., Napier, J., Littlechild, J. A., Somerfield, P. J., Allen , M. J. 2011 Coccolithophores: functional biodiversity, enzymes and bioprospecting. Mar. Drugs., 9, 586-602.
Keywords: functional biodiversity; bioprospecting; biocatalysis; coccolithophore
Strain(s): 2697 
PubMed: 21731551
DOI: 10.3390/md9040586
Rekully, CM., Faulkner, ST., Lachenmyer, EM., Cunningham, BR., Shaw, TJ., Richardson, TL., Myrick, ML. 2017 Fluorescence excitation spectroscopy for phytoplankton species classification using an all-pairs method: Characterization of a system with unexpectedly low rank. Appl. Spectrosc., 72, 442-462.
Keywords: Chemometrics; classification; fluorescence; optical computing; optical filters; phytoplankton
Strain(s): 704 
PubMed: 29069908
DOI: 10.1177/0003702817741278
Religia, P., Kato, Y., Fukushima, E. O., Matsuura, T., Muranaka, T., Watanabe, H. 2019 Atrazine exposed phytoplankton causes the production of non-viable 2 offspring on Daphnia magna. Mar. Environ. Res., 145, 177-183.
Keywords: Atrazine; Daphnia magna; Raphidocelis subcapitata; Risk assessment; Sublethal effects
Strain(s): 35 
PubMed: 30797563
DOI: 10.1016/j.marenvres.2019.02.007
Repetti, S. I., Iha, C., Uthanumallian, K., Jackson, C. J., Chen, Y., Chan C. X., Verbruggen, H. 2022 Nuclear genome of a pedinophyte pinpoints genomic innovationand streamlining in the green algae. New Phytol., 233, 2144–2154.
Keywords: Chlorophyta; genome evolution; green algae; nuclear genome; pedinophyte; streamlining; UTC; Viridiplantae
Strain(s): 2566 
PubMed: 34923642
DOI: 10.1111/nph.17926
Reyes-Prieto, A., Russell, S., Figueroa-Martinez, F., Jackson, C. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes. In Plastid Genome Evolution - Advances in Botanical Research, Eds. by Chaw, S.-M., Jansen, R. K., Academic press 85, pp. 95-127.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Archaeplastida; Plastid; Plastid genome; HGT
Strain(s): 763764 
DOI: 10.1016/bs.abr.2017.11.012
Rhee, JS., Choi, BS., Han, J., Hwang, SJ., Choi, IY., Lee, JS. 2012 Draft genome database construction from four strains (NIES-298, FCY-26, -27, and -28) of the Cyanobacterium Microcystis aeruginosa. J. Microbiol. Biotechnol., 22, 1208-1213.
Keywords: Cyanobacteria; Microcystis aeruginosa; genome
Strain(s): 298 
PubMed: 22814493
DOI: 10.4014/jmb.1112.12034
Rhee, JS., Ki, JS., Kim, BM., Hwang, SJ., Choi, IY., Lee, JS. 2012 HspA and HtpG Enhance Thermotolerance in the Cyanobacterium, Microcystis aeruginosa NIES-298. J. Microbiol. Biotechnol., 22, 118-125.
Keywords: Cyanobacteria; Microcystis aeruginosa; heat shock protein; thermotolerance
Strain(s): 298 
PubMed: 22297228
DOI: 10.4014/jmb.1108.08001
Rho, M. C., Matsunaga, K., Yasuda, K., Ohizumi, Y. 1996 A novel inhibitor of platelet aggregation from the Cyanophyceae Oscillatoria rosea (NIES-208). Planta Med., 62, 473-474.
Strain(s): 208 
PubMed: 8923815
DOI: 10.1055/s-2006-957944
Rho, M.-C., Yasuda, K., Matsunaga, K., Ohizumi, Y. 1997 A monogalactopyranosyl acylglycerol from Oltmannsiellopsis unicellularis (NIES-359). Phytochemistry, 44, 1507-1509.
Keywords: Oltmannsiellopsis unicellularis; Chlorophyceae; marine alga; glycolipid; monogalactopyranosyl acylglycerol; platelet aggregation
Strain(s): 359 
DOI: 10.1016/S0031-9422(96)00736-4
Rickaby, R.E.M., Henderiks, J., Young, J.N. 2010 Perturbing phytoplankton: Response and isotopic fractionation with changing carbonate chemistry in two coccolithophore species. Clim. Past., 6, 771-785.
Strain(s): 2696 
DOI: 10.5194/cp-6-771-2010
Riisberg, I., Edvardsen, B. 2008 Genetic variation in bloom-forming ichthyotoxic Pseudochattonella species (Dictyochophyceae, Heterokonta) using nuclear, mitochondrial and plastid DNA sequence data. Eur. J. Phycol., 43, 413-422.
Keywords: cox1; Dictyochophyceae; genetic variation; harmful algae; psbA; Pseudochattonella; rbcL; rDNA
Strain(s): 670 
DOI: 10.1080/06970260802299602
Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID).
Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression
Strain(s): 40764077 
PubMed: 33182359
DOI: 10.3390/microorganisms8111759
Robertson, B. R., Tezuka, N., Watanabe, M. M. 2001 Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content. Int. J. Syst. Evol. Microbiol., 51, 861-871.
Keywords: cyanobacteria; phycocyanin; phylogeny; 16S rDNA; Synechococcus
Strain(s): 937938939940941942943944945946947948949950951952953954955956957958959960961962963964965 
PubMed: 11411708
DOI: 10.1099/00207713-51-3-861
Rocap, G., Larimer, F. W., Lamerdin, J., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M., Hauser, L., Hess, W. R., Johnson, Z. I., Land, M., Lindell, D., Post, A. F., Regala, W., Shah, M., Shaw, S. L., Steglich, C., Sullivan, M. B., Ting, C. S., Tolonen, A., Webb, E. A., Zinser, E. R., Chisholm, S. W. 2003 Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature, 424, 1042-1047.
Strain(s): 28802887 
PubMed: 12917642
DOI: 10.1038/nature01947
Rockwell, N. C., Moreno, M. V., Martin, S. S., Lagarias, J. C. 2022 Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes. Photochem. Photobiol. Sci., 21, 471–491.
Keywords: Cyanobacteriochrome; Photoisomerization; Evolution; Structure/function
Strain(s): 21 
PubMed: 35411484
DOI: 10.1007/s43630-022-00213-3
Rodríguez-Salinas, E., Riveros-Rosas, H., Li, ZK., Fučíková, K., Brand JJ., Lewis, LA., González-Halphen, D. 2012 Lineage-specific fragmentation and nuclear relocation of the mitochondrial cox2 gene in chlorophycean green algae (Chlorophyta). Mol. Phylogenet. Evol., 64, 166-176.
Keywords: Mitochondrial genes; Cytochrome oxidase; Chlorophyte algae; Chlorophyceae; Gene migration; Gene fragmentation
Strain(s): 360484 
PubMed: 22724135
DOI: 10.1016/j.ympev.2012.03.014
Rogers, J. E., Devereux, R., James, J. B., George, S. E., Forshay, K. J. 2021 Seasonal distribution of cyanobacteria in three urban eutrophic lakes results from an epidemic-like response to environmental conditions. Curr. Microbiol., 78, 2298-2316.
Strain(s): 843 
PubMed: 33904973
DOI: 10.1007/s00284-021-02498-6
Rokitta, S. D., de Nooijer, L. J., Trimborn, S., de Vargas, C., Rost, B., John, U. 2011 Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania huxleyi (Haptophyta) and reflect specialization to different ecological niches. J. Phycol., 47, 829-838.
Keywords: endocytosis; life-cycle stages; microarray; quantitative RT-PCR; transcriptome profiling
Strain(s): 2697 
PubMed: 27020019
DOI: 10.1111/j.1529-8817.2011.01014.x
Rosas-Santiago, P., Zechinelli Pérez, K., Gómez Méndez, M. F., Vera López Portillo, F., Ruiz Salas, J. L., Cordoba Martínez, E., Acosta Maspon, A., Pantoja, O. 2021 A differential subcellular localization of two copper transporters from the COPT family suggests distinct roles in copper homeostasis in Physcomitrium patens. Plant Physiol. Biochem., 167, 459-469.
Keywords: Copper transport; Copper uptake; COPT; Physcomitrium patens
Strain(s): 2285 
PubMed: 34418592
DOI: 10.1016/j.plaphy.2021.08.023
Rounge, T. B., Rohrlack, T., Kristensen, T., Jakobsen, K. S. 2008 Recombination and selectional forces in cyanopeptolin NRPS operons from highly similar, but geographically remote Planktothrix strains. BMC Microbiol., 8, 141 (article ID).
Strain(s): 205 
PubMed: 18727817
DOI: 10.1186/1471-2180-8-141
Rubiyatno, Matsui, T., Mori, K., Toyama, T. 2021 Paramylon production by Euglena gracilis via mixotrophic cultivation using sewage effluent and waste organic compounds. Bioresour. Technol. Reports, 15, 100735 (article ID).
Strain(s): 48 
DOI: 10.1016/j.biteb.2021.100735
Rubiyatno, R., Mori, K., Inoue, D., Kim, S., Yu, J., Lee, T., Ike, M., Toyama, T. 2021 Isolation and characterization of Euglena gracilis-associated bacteria, Enterobacter sp. CA3 and Emticicia sp. CN5, capable of promoting the growth and paramylon production of E. gracilis under mixotrophic cultivation. Microorganisms, 9, 1496 (article ID).
Keywords: Euglena gracilis; paramylon; associated bacteria; growth promotion; paramylon production promotion; co-culture; Emticicia sp.; Enterobacter sp.
Strain(s): 48 
PubMed: 34361931
DOI: 10.3390/microorganisms9071496
Rueter, J. G., Ohki, K., Fujita,Y. 1990 The effect of iron nutrition on photosynthesis and nitrogen fixation in cultures of Trichodesmium (cyanophyceae). J. Phycol., 26, 30-35.
Strain(s): 3600 
DOI: 10.1111/j.0022-3646.1990.00030.x
Russell, S., Jackson, C., Reyes-Prieto, A. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).
Keywords: Archaeplastida; genomic distance; glauco-phytes; mitochondria; organelle genomics; plastid; substitution rates
Strain(s): 763764 
PubMed: 33142007
DOI: 10.1111/jeu.12831

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