Search Reference

Danbara, A., Shiraiwa, Y. 1999 The requirement of selenium for the growth of marine coccolithophorids, Emiliania huxleyi, Gephyrocapsa oceanica and Helladosphaera sp. (Prymnesiophyceae). Plant Cell Physiol, 40, 762-766.
Keywords: artificial seawater; coccolithophorids; Emiliania huxleyi; Gephyrocapsa oceanica; Helladosphaera; selenium-depletion; selenium-requirement
Strain(s): 837838 
DOI: 10.1093/oxfordjournals.pcp.a029603
Darienko, T., Gustavs, L., Eggert, A., Wolf, W., Pröschold, T. 2015 Evaluating the species boundaries of green microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) using integrative taxonomy and DNA barcoding with further implications for the species identification in environmental samples. PLoS One, 10, e0127838 (article ID).
Strain(s): 22522353 
PubMed: 26080086
DOI: 10.1371/journal.pone.0127838
Davison, J. R., Bewley, C. A. 2019 Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii. J. Nat. Prod., 82, 148-153.
Strain(s): 1699 
PubMed: 30623657
DOI: 10.1021/acs.jnatprod.8b00858
De Halperin, D. R., Mendoza, M. L., De Caire, G. Z. 1973 Axenic cultures of blue-green algae (Cyanophyta). Physis secc. B. Buenos Aires., 32, 67-84 (in Spanish with English summary).
Strain(s): 37 
de Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R. 2018 Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nat. Commun., 9, 1341 (article ID).
Keywords: DNA methylation; Epigenomics; Molecular evolution; Transposition
Strain(s): 2285 
PubMed: 29632298
DOI: 10.1038/s41467-018-03724-9
Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445.
Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists
Strain(s): 7637642565 
PubMed: 25740460
DOI: 10.1111/1755-0998.12401
Deka, D., Marwein, R., Chikkaputtaiah, C., Kaki, S. S., Azmeera, T., Boruah, H. P. D., Velmurugan, N. 2020 Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry. Process Biochem., 96, 90-101.
Keywords: Long-chain fatty acids; Micractinium sp.; Strain improvement; Fluorescent activated cell sorter; Adaptive evolution
Strain(s): 2590 
DOI: 10.1016/j.procbio.2020.06.004
del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I. 2014 The others: our biased perspective of eukaryotic genomes. Trends Ecol. Evol., 29, 252-259.
Strain(s): 1000258225842587259026702673269126932694269526962697269927002707275127532755275627582761336933703371 
PubMed: 24726347
DOI: 10.1016/j.tree.2014.03.006
Delaux, P-M., Radhakrishnan, G.V., Jayaraman, D., Cheema, J., Malbreil, M., Volkening, J.D., Sekimoto, H., Nishiyama, T., Melkonian, M., Pokorny, L., Rothfels, C.J., Sederoff, H.W., Stevenson, D.W., Surek, B., Zhang, Y., Sussman, M.R., Dunand, C., Morris, R.J., Roux, C., Wong, G.K-S., Oldroyd, G.E.D., Ané, J-M. 2015 Algal ancestor of land plants was preadapted for symbiosis. Proc. Natl. Acad. Sci. U. S. A., 112, 13390-13395
Keywords: symbiosis; plant evolution; algae; plant–microbe interactions; phylogeny
Strain(s): 67 
PubMed: 26438870
DOI: 10.1073/pnas.1515426112
Delmont, T. O., Eren, A. M. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ, 6, e4320 (article ID).
Strain(s): 2880 
PubMed: 29423345
DOI: 10.7717/peerj.4320
Delrue, F., Cerqueira, M. R. D., Compadre, A., Alvarez, P., Fleury, G., Escoffier, C., Sassi, J. F. 2021 Hydroponic farm wastewater treatment using an indigenous consortium. Processes, 9, 519 (article ID).
Strain(s): 2272152 
DOI: 10.3390/pr9030519
Demura, M., Kawachi, M., Kunugi, M., Nishizawa, T., Kasai, F., Watanabe, M. M. 2007 Development of microsatellite markers for the red tide-forming harmful species Chattonella antiqua, C. marina, and C. ovata (Raphidophyceae). Mol. Ecol. Notes, 7, 315-317.
Keywords: Chattonella; harmful algal bloom; microsatellite; phytoplankton; Raphidophyceae; red tide
Strain(s): 2 
DOI: 10.1111/j.1471-8286.2006.01592.x
Demura, M., Nakayama, T., Kasai, F., Kawachi, M. 2014 Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers. Phycol. Res., 62, 102-108.
Keywords: Chattonella marina var. antiqua; Chattonella marina var. marina; genetic structure; isolation by distance; microsatellite marker; population genetics
Strain(s): 1231483848586113114115116118121161557197419751976197719781980198119821983198423832384238523862387238823892390239123922393239423952396239723982399240024012402240324042405240624072509251025112512251325142515251625172518 
DOI: 10.1111/pre.12047
Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy
Strain(s): 123569101483848511311411611814616129355756160367171684919741975197619771978198019811982198319841986238323842385238623872388238923912392239323942395239623972398239924002401240224032404240524062407 
DOI: 10.2216/08-98.1
Denboh, T., Hendrayanti, D., Ichimura, T. 2001 Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data. J. Phycol., 37, 1063-1072.
Keywords: Charophyceae; Closterium; desmid; molecular phylogeny; placoderm; SSU rDNA; Zygnematales
Strain(s): 52125165170174175180181185187188191194198199200271339449 
DOI: 10.1046/j.1529-8817.2001.00146.x
Denboh, T., Ichimura, T., Hendrayanti, D., Coleman, A. W. 2003 Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 Group I intron and ITS2 of nuclear rDNA. J. Phycol., 39, 960-977.
Keywords: biological species; Closterium; group I introns; ITS2; mating group; molecular phylogeny; speciation
Strain(s): 172173174182183228229 
DOI: 10.1046/j.1529-8817.2003.02145.x
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A. 2019 Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon. Algal Res., 40, 101492.
Keywords: Chrysochromulina; Freshwater; Scale-less; Electron microscopy; Morphology; Cryptic species complexes
Strain(s): 562 
DOI: 10.1016/j.algal.2019.101492
Devi, A., Chiu, Y.-T., Hsueh, H.-T., Lin, T.-F. 2021 Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges. Water Res., 188, 116478 (article ID).
Keywords: biomolecular; drinking water; database; geo; mic; monitoring; Taq-Man probes
Strain(s): 5124062406342374238 
DOI: 10.1016/j.watres.2020.116478
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Comparative ecophysiology of the xanthophyll cycle in six marine phytoplanktonic species. Protist, 160, 397-411.
Keywords: diatoxanthin; photoprotection; phytoplankton; picoplankton; pigments; xanthophyll cycle
Strain(s): 2687 
PubMed: 19375387
DOI: 10.1016/j.protis.2009.03.001
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnol. Oceanogr., 54, 823-836.
Strain(s): 2690 
DOI: 10.4319/lo.2009.54.3.0823
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Blue light induction of carbonic anhydrase activity in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 215-219.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photoreceptor
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077732
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Light requirement for carbonic anhydrase induction in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 207-213.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; light intensity
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077731
Dionisio-Sese, M. L., Fukuzawa, H., Miyachi, S. 1990 Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol., 94, 1103-1110.
Strain(s): 2235 
PubMed: 16667803
DOI: 10.1104/pp.94.3.1103
Dionisio-Sese, M. L., Miyachi, S. 1992 The effect of sodium chloride on carbonic anhydrase activity in marine microalgae. J. Phycol., 28, 619-624.
Keywords: carbonic anhydrase; Cl- activation; Cl- inhibition; marine microalgae; NaCl effect; photosynthesis
Strain(s): 2168 
DOI: 10.1111/j.0022-3646.1992.00619.x
Dittami, S. M., Riisberg, I., Edvardsen, B. 2013 Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta). Environ. Sci. Pollut. Res., 20, 6824-6837.
Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR
Strain(s): 670 
PubMed: 23361173
DOI: 10.1007/s11356-012-1402-2
do Amaral, S. C., Monteiro, P. R., Neto, J. d. S. P., Serra, G. M., Gonçalves, E. C., Xavier, L. P., Santos, A. V. 2021 Current knowledge on microviridin from cyanobacteria. Mar. Drugs, 19, 17 (article ID).
Keywords: biotechnology; cyanobacteria; ecology; microviridin; oligopeptide
Strain(s): 2988341211 
PubMed: 33406599
DOI: 10.3390/md19010017
Domínguez-Bocanegra, A. R., Legarreta, I. G., Jeronimo, F. M. 2004 Influence of environmental and nutritional factors in the production of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 92, 209-214.
Keywords: Haematococcus; Astaxanthin production; Light intensity; Aeration
Strain(s): 144 
PubMed: 14693455
DOI: 10.1016/j.biortech.2003.04.001
Domínguez-Bocanegra, A. R., Ponce-Noyola, T., Torres-Muñoz, J. A. 2007 Astaxanthin production by Phaffia rhodozyma and Haematococcus pluvialis: a comparative study. Appl. Microbiol. Biotechnol., 75, 783-791.
Keywords: Haematococcus pluvialis; Phaffia rhodozyma; Astaxanthin synthesis; Coconut milk
Strain(s): 144 
PubMed: 17333170
DOI: 10.1007/s00253-007-0889-9
Domínguez-Martín, M. A., Gómez-Baena, G., Díez J., López-Grueso, M. J., Beynon, R. J., García-Fernández, J. M. 2017 Quantitative proteomics shows extensive remodeling induced by nitrogen limitation in Prochlorococcus marinus SS120. mSystems., 2, e00008-17 (article ID).
Keywords: marine cyanobacteria; nitrogen limitation; nitrogen metabolism; prochlorococcus; quantitative proteomics
Strain(s): 2880 
PubMed: 28593196
DOI: 10.1128/mSystems.00008-17
Donia, M. S., Schmidt, E. W. 2011 Linking chemistry and genetics in the growing cyanobactin natural products family. Chem. Biol., 18, 508-519.
Strain(s): 596 
PubMed: 21513887
DOI: 10.1016/j.chembiol.2011.01.019
Dorantes-Aranda, J. J., Nichols, P. D., Waite, T. D., Hallegraeff, G. M. 2013 Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells. J. Phycol., 2, 427-438.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 118 
PubMed: 27008528
DOI: 10.1111/jpy.12053
Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R. 2019 Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923.
Keywords: heterotrophy; ochrophyte; phylogenomics; dual targeting; protist
Strain(s): 1846 
PubMed: 30872488
DOI: 10.1073/pnas.1819976116
Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID).
Strain(s): 4391 
PubMed: 24453981
DOI: 10.1371/journal.pgen.1004008
Dreher, T. W., Davis, E. W., Mueller, R. S., Otten, T. G. 2021 Comparative genomics of the ADA clade within the Nostocales. Harmful Algae, 104, 102037 (article ID).
Keywords: Dolichospermum; Aphanizomenon; Anabaena; Mobilome; Genome synteny; Cyanotoxin genes
Strain(s): 806 
PubMed: 34023075
DOI: 10.1016/j.hal.2021.102037
Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W. 2018 A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales. Harmful Algae, 77, 93-107.
Keywords: Genomics; Metagenomics; Filamentous cyanobacteria
Strain(s): 81 
PubMed: 30005805
DOI: 10.1016/j.hal.2018.05.009
Du, HW., Yang, LY., Wu, J., Xiao, L., Wang, XL., Jiang, LJ. 2012 Simultaneous removal of phosphorus and nitrogen in a sequencing batch biofilm reactor with transgenic bacteria expressing polyphosphate kinase. Appl. Microbiol. Biotechnol., 96, 265-272.
Keywords: Poly-phosphate kinase gene; Pseudomonas putida; Sequencing batch biofilm reactor; Phosphorus removal; Nitrogen removal
Strain(s): 843 
PubMed: 22218771
DOI: 10.1007/s00253-011-3839-5
Dufresne, A., Garczarek, L., Partensky, F. 2005 Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol., 6, R14 (article ID).
Strain(s): 28802887 
PubMed: 15693943
DOI: 10.1186/gb-2005-6-2-r14
Dwi, S., Hirata, K., Asada, Y., Miyamoto, K. 2001 Utilization of cyanobacterial biomass from water bloom for bioproduction of lactic acid. World J. Microbiol. Biotech., 17, 259-264.
Keywords: cyanobacterium; CO2 supplementation; lactic acid; Lactobacillus agilis; L. amylovorus; L. ruminis; starch; water bloom
Strain(s): 2344 
DOI: 10.1023/A:1016638619
Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z. 2019 The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš. Toxins, 11, 725 (article ID).
Keywords: microcystin; biodegradation; hydrogen peroxide; treatment; cyanobacteria; bloom
Strain(s): 107 
PubMed: 31835838
DOI: 10.3390/toxins11120725
Demura, M. 2020 Biomass productivity and paramylon content of 3 strains of Euglena gracilis. Bull. Fac. Agr., Saga Univ., 105, 1-7 (in Japanese with English summary).
Keywords: Euglena; paramylon; biomass productivity; cost
Strain(s): 474849 

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