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Differential effects of hydrogen peroxide and L-lysine treatments on the growth of freshwater Cyanophyta and Chlorophyta.
Ecologies,
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Keywords: hydrogen peroxide; L-lysine; algaecide; Microcystis aeruginosa; cyanobacteria Strain(s): 88, 102, 843, 4325 DOI: 10.3390/ecologies4020023 |
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Keywords: artificial seawater; coccolithophorids; Emiliania huxleyi; Gephyrocapsa oceanica; Helladosphaera; selenium-depletion; selenium-requirement Strain(s): 837, 838 DOI: 10.1093/oxfordjournals.pcp.a029603 |
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Evaluating the species boundaries of green microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) using integrative taxonomy and DNA barcoding with further implications for the species identification in environmental samples.
PLoS One,
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Davison, H. R., Pilgrim, J., Wybouw, N., Parker, J., Pirro, S., Hunter-Barnett, S., Campbell, P. M., Blow, F., Darby, A. C., Hurst, G. D. D., Siozios, S.
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Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group.
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Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii.
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The genome of antibiotic-producing colonies of the Pelagophyte alga Chrysophaeum taylorii reveals a diverse and non-canonical capacity for secondary metabolism.
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The effect of light availability and light wavelength on growth, 2-MIB biosynthesis, and 2-MIB-related gene expression in Pseudanabaena foetida var. intermedia.
Arch. Microbiol.,
Arch. Microbiol.,
367 (article ID).
Keywords: Cyanobacteria; 2-MIB; Gene expression; Light-dependent Strain(s): 512 PubMed: 39105810 DOI: 10.1007/s00203-024-04099-w |
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De Halperin, D. R., Mendoza, M. L., De Caire, G. Z.
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Axenic cultures of blue-green algae (Cyanophyta).
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Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
Nat. Commun.,
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Decelle, J., Probert, I., Bittner, L., Not, F.
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An original mode of symbiosis in open ocean plankton.
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Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R.
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PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy.
Mol. Ecol. Resour.,
15,
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Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists Strain(s): 763, 764, 2565 PubMed: 25740460 DOI: 10.1111/1755-0998.12401 |
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Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry.
Process Biochem.,
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Keywords: Long-chain fatty acids; Micractinium sp.; Strain improvement; Fluorescent activated cell sorter; Adaptive evolution Strain(s): 2590 DOI: 10.1016/j.procbio.2020.06.004 |
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del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I.
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The others: our biased perspective of eukaryotic genomes.
Trends Ecol. Evol.,
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Strain(s): 1000, 2582, 2584, 2587, 2590, 2670, 2673, 2691, 2693, 2694, 2695, 2696, 2697, 2699, 2700, 2707, 2751, 2753, 2755, 2756, 2758, 2761, 3369, 3370, 3371 PubMed: 24726347 DOI: 10.1016/j.tree.2014.03.006 |
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Algal ancestor of land plants was preadapted for symbiosis.
Proc. Natl. Acad. Sci. U. S. A.,
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Delmont, T. O. & Eren, A. M.
2018
Linking pangenomes and metagenomes: the Prochlorococcus metapangenome.
PeerJ,
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Delrue, F., Cerqueira, M. R. D., Compadre, A., Alvarez, P., Fleury, G., Escoffier, C., Sassi, J. F.
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Hydroponic farm wastewater treatment using an indigenous consortium.
Processes,
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Demura, M., Kawachi, M., Kunugi, M., Nishizawa, T., Kasai, F., Watanabe, M. M.
2007
Development of microsatellite markers for the red tide-forming harmful species Chattonella antiqua, C. marina, and C. ovata (Raphidophyceae).
Mol. Ecol. Notes,
7,
315-317.
Keywords: Chattonella; harmful algal bloom; microsatellite; phytoplankton; Raphidophyceae; red tide Strain(s): 2 DOI: 10.1111/j.1471-8286.2006.01592.x |
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Demura, M., Nakayama, T., Kasai, F., Kawachi, M.
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Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers.
Phycol. Res.,
62,
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Keywords: Chattonella marina var. antiqua; Chattonella marina var. marina; genetic structure; isolation by distance; microsatellite marker; population genetics Strain(s): 1, 2, 3, 14, 83, 84, 85, 86, 113, 114, 115, 116, 118, 121, 161, 557, 1974, 1975, 1976, 1977, 1978, 1980, 1981, 2383, 2390, 2391, 2405, 2406, 2509, 2510, 2511, 2514, 2515, 2517 DOI: 10.1111/pre.12047 |
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Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M.
2009
Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity.
Phycologia,
48,
518-535.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy Strain(s): 1, 2, 3, 5, 6, 9, 10, 14, 83, 84, 85, 113, 114, 116, 118, 146, 161, 293, 557, 561, 603, 671, 716, 849, 1974, 1975, 1976, 1977, 1978, 1980, 1981, 1986, 2383, 2391, 2405, 2406 DOI: 10.2216/08-98.1 |
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Denboh, T., Hendrayanti, D., Ichimura, T.
2001
Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data.
J. Phycol.,
37,
1063-1072.
Keywords: Charophyceae; Closterium; desmid; molecular phylogeny; placoderm; SSU rDNA; Zygnematales Strain(s): 52, 125, 165, 170, 174, 175, 180, 181, 185, 187, 188, 191, 194, 198, 199, 200, 339, 449 DOI: 10.1046/j.1529-8817.2001.00146.x |
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Denboh, T., Ichimura, T., Hendrayanti, D., Coleman, A. W.
2003
Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 Group I intron and ITS2 of nuclear rDNA.
J. Phycol.,
39,
960-977.
Keywords: biological species; Closterium; group I introns; ITS2; mating group; molecular phylogeny; speciation Strain(s): 172, 173, 174, 182, 183, 228, 229 DOI: 10.1046/j.1529-8817.2003.02145.x |
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Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon.
Algal Res.,
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Keywords: Chrysochromulina; Freshwater; Scale-less; Electron microscopy; Morphology; Cryptic species complexes Strain(s): 562 DOI: 10.1016/j.algal.2019.101492 |
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Derienko, T. & Pröschold, T.
2024
Solotvynia, a New Coccoid Lineage among the Ulvophyceae (Chlorophyta).
Microorganisms,
12,
868 (article ID).
Keywords: Chlorocystis; distribution; Halochlorococcum; Ignatius; ITS-2 secondary structure; marine coccoids; SSU/ITS phylogeny; Symbiochlorum Strain(s): 1838, 1839 PubMed: 38792698 DOI: 10.3390/microorganisms12050868 |
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Devi, A., Chiu, Y.-T., Hsueh, H.-T., Lin, T.-F.
2021
Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges.
Water Res.,
188,
116478 (article ID).
Keywords: biomolecular; drinking water; database; geo; mic; monitoring; Taq-Man probes Strain(s): 512, 4062, 4063, 4237, 4238 PubMed: 33045635 DOI: 10.1016/j.watres.2020.116478 |
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Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C.
2009
Comparative ecophysiology of the xanthophyll cycle in six marine phytoplanktonic species.
Protist,
160,
397-411.
Keywords: diatoxanthin; photoprotection; phytoplankton; picoplankton; pigments; xanthophyll cycle Strain(s): 2687 PubMed: 19375387 DOI: 10.1016/j.protis.2009.03.001 |
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Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C.
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Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light.
Limnol. Oceanogr.,
54,
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Strain(s): 2690 DOI: 10.4319/lo.2009.54.3.0823 |
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Dionisio, M. L., Tsuzuki, M., Miyachi, S.
1989
Blue light induction of carbonic anhydrase activity in Chlamydomonas reinhardtii.
Plant Cell Physiol.,
30,
215-219.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photoreceptor Strain(s): 2235 DOI: 10.1093/oxfordjournals.pcp.a077732 |
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Dionisio, M. L., Tsuzuki, M., Miyachi, S.
1989
Light requirement for carbonic anhydrase induction in Chlamydomonas reinhardtii.
Plant Cell Physiol.,
30,
207-213.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; light intensity Strain(s): 2235 DOI: 10.1093/oxfordjournals.pcp.a077731 |
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Dionisio-Sese, M. L., Fukuzawa, H., Miyachi, S.
1990
Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii.
Plant Physiol.,
94,
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Dionisio-Sese, M. L., Miyachi, S.
1992
The effect of sodium chloride on carbonic anhydrase activity in marine microalgae.
J. Phycol.,
28,
619-624.
Keywords: carbonic anhydrase; Cl- activation; Cl- inhibition; marine microalgae; NaCl effect; photosynthesis Strain(s): 2168 DOI: 10.1111/j.0022-3646.1992.00619.x |
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Dittami, S. M., Riisberg, I., Edvardsen, B.
2013
Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta).
Environ. Sci. Pollut. Res.,
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6824-6837.
Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR Strain(s): 670 PubMed: 23361173 DOI: 10.1007/s11356-012-1402-2 |
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do Amaral, S. C., Monteiro, P. R., Neto, J. d. S. P., Serra, G. M., Gonçalves, E. C., Xavier, L. P., Santos, A. V.
2021
Current knowledge on microviridin from cyanobacteria.
Mar. Drugs,
19,
17 (article ID).
Keywords: biotechnology; cyanobacteria; ecology; microviridin; oligopeptide Strain(s): 298, 834, 1211 PubMed: 33406599 DOI: 10.3390/md19010017 |
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Domínguez-Bocanegra, A. R., Legarreta, I. G., Jeronimo, F. M.
2004
Influence of environmental and nutritional factors in the production of astaxanthin from Haematococcus pluvialis.
Bioresour. Technol.,
92,
209-214.
Keywords: Haematococcus; Astaxanthin production; Light intensity; Aeration Strain(s): 144 PubMed: 14693455 DOI: 10.1016/j.biortech.2003.04.001 |
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Domínguez-Bocanegra, A. R., Ponce-Noyola, T., Torres-Muñoz, J. A.
2007
Astaxanthin production by Phaffia rhodozyma and Haematococcus pluvialis: a comparative study.
Appl. Microbiol. Biotechnol.,
75,
783-791.
Keywords: Haematococcus pluvialis; Phaffia rhodozyma; Astaxanthin synthesis; Coconut milk Strain(s): 144 PubMed: 17333170 DOI: 10.1007/s00253-007-0889-9 |
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Domínguez-Martín, M. A., Gómez-Baena, G., Díez J., López-Grueso, M. J., Beynon, R. J., García-Fernández, J. M.
2017
Quantitative proteomics shows extensive remodeling induced by nitrogen limitation in Prochlorococcus marinus SS120.
mSystems.,
2,
e00008-17 (article ID).
Keywords: marine cyanobacteria; nitrogen limitation; nitrogen metabolism; prochlorococcus; quantitative proteomics Strain(s): 2880 PubMed: 28593196 DOI: 10.1128/mSystems.00008-17 |
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Dong, X., Zhang, S., Chen, X., Lei, Z., Yuan, T., Shimizu, K., Utsumi, M.
2024
Preliminary tests on carbon and nitrogen emissions and nutrients availability upon application of algal-bacterial granules to arid and low fertility soil.
Chem. Eng. J.,
492,
152250 (article ID).
Keywords: Algal-bacterial aerobic granular sludge; Carbon mineralization; Elevated CO2 content; Nitrogen loss; Soil amendment Strain(s): 1726 DOI: 10.1016/j.cej.2024.152250 |
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Dong, Y. T., Krishnamoorthi, S., Tan, G. Z. H., Poh, Z. Y., Urano, D.
2024
Co-option of plant gene regulatory network in nutrient responses during terrestrialization.
Nat. Plants,
10,
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Strain(s): 67, 68, 2285 PubMed: 39592744 DOI: 10.1038/s41477-024-01851-4 |
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Donia, M. S., Schmidt, E. W.
2011
Linking chemistry and genetics in the growing cyanobactin natural products family.
Chem. Biol.,
18,
508-519.
Strain(s): 596 PubMed: 21513887 DOI: 10.1016/j.chembiol.2011.01.019 |
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Dorantes-Aranda, J. J., Nichols, P. D., Waite, T. D., Hallegraeff, G. M.
2013
Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells.
J. Phycol.,
2,
427-438.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1 Strain(s): 118 PubMed: 27008528 DOI: 10.1111/jpy.12053 |
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Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R.
2019
Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes.
Proc. Natl. Acad. Sci. U. S. A.,
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Keywords: heterotrophy; ochrophyte; phylogenomics; dual targeting; protist Strain(s): 1846 PubMed: 30872488 DOI: 10.1073/pnas.1819976116 |
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Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J.
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Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives.
PLoS Genet.,
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Strain(s): 4391 PubMed: 24453981 DOI: 10.1371/journal.pgen.1004008 |
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Dreher, T. W., Davis, E. W., Mueller, R. S., Otten, T. G.
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Comparative genomics of the ADA clade within the Nostocales.
Harmful Algae,
104,
102037 (article ID).
Keywords: Dolichospermum; Aphanizomenon; Anabaena; Mobilome; Genome synteny; Cyanotoxin genes Strain(s): 80, 81, 806 PubMed: 34023075 DOI: 10.1016/j.hal.2021.102037 |
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Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W.
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A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales.
Harmful Algae,
77,
93-107.
Keywords: Genomics; Metagenomics; Filamentous cyanobacteria Strain(s): 81 PubMed: 30005805 DOI: 10.1016/j.hal.2018.05.009 |
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Du, HW., Yang, LY., Wu, J., Xiao, L., Wang, XL., Jiang, LJ.
2012
Simultaneous removal of phosphorus and nitrogen in a sequencing batch biofilm reactor with transgenic bacteria expressing polyphosphate kinase.
Appl. Microbiol. Biotechnol.,
96,
265-272.
Keywords: Poly-phosphate kinase gene; Pseudomonas putida; Sequencing batch biofilm reactor; Phosphorus removal; Nitrogen removal Strain(s): 843 PubMed: 22218771 DOI: 10.1007/s00253-011-3839-5 |
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Dufresne, A., Garczarek, L., Partensky, F.
2005
Accelerated evolution associated with genome reduction in a free-living prokaryote.
Genome Biol.,
6,
R14 (article ID).
Strain(s): 2880, 2887 PubMed: 15693943 DOI: 10.1186/gb-2005-6-2-r14 |
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Dulić, T., Svirčev, Z., Palanački Malešević, T., Faassen, E. J., Savela, H., Hao, Q., Meriluoto, J.
2022
Assessment of common cyanotoxins in cyanobacteria of biological loess crusts.
Toxins,
14,
215 (article ID).
Keywords: cyanotoxins; biocrusts; loess; terrestrial cyanobacteria; sedimentary biosignatures; land restoration Strain(s): 107 PubMed: 35324712 DOI: 10.3390/toxins14030215 |
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Duque, P., Vieira, C. P., Vieira, J.
2022
Advances in novel animal Vitamin C biosynthesis pathways and the role of prokaryote-based inferences to understand their origin.
Genes,
13,
1917 (article ID).
Keywords: ascorbic acid; evolution; synthesis; aldonolactone oxidoreductases; insects; nematodes; prokaryotes Strain(s): 267 PubMed: 36292802 DOI: 10.3390/genes13101917 |
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Dwi, S., Hirata, K., Asada, Y., Miyamoto, K.
2001
Utilization of cyanobacterial biomass from water bloom for bioproduction of lactic acid.
World J. Microbiol. Biotech.,
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Keywords: cyanobacterium; CO2 supplementation; lactic acid; Lactobacillus agilis; L. amylovorus; L. ruminis; starch; water bloom Strain(s): 23, 44 DOI: 10.1023/A:1016638619 |
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Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z.
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The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš.
Toxins,
11,
725 (article ID).
Keywords: microcystin; biodegradation; hydrogen peroxide; treatment; cyanobacteria; bloom Strain(s): 107 PubMed: 31835838 DOI: 10.3390/toxins11120725 |
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Demura, M.
2020
Biomass productivity and paramylon content of 3 strains of Euglena gracilis.
Bull. Fac. Agr., Saga Univ.,
105,
1-7 (in Japanese with English summary).
Keywords: Euglena; paramylon; biomass productivity; cost Strain(s): 47, 48, 49 |
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