Search Reference

Abe, J., Hirano, N., Komiya, A., Kanda, N., Fujiwara, A., Hori, S., Tsuchikane, Y., Sekimoto, H. 2016 Preparation of knockdown transformants of unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Bio-protocol, 6, e1813 (article ID).
Keywords: Knockdown; Alga; Closterium; Charophycean; Transformation
Strain(s): 6768 
DOI: 10.21769/BioProtoc.1813
Abe, J., Hiwatashi, Y., Ito, M., Hasebe, M., Sekimoto, H. 2008 Expression of exogenous genes under the control of endogenous HSP70 and CAB promoters in the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 49, 625-632.
Strain(s): 68 
PubMed: 18308758
DOI: 10.1093/pcp/pcn039
Abe, J., Hori, S., Sato, M., Sekimoto, H. 2016 Concanavalin A disrupts the release of fibrous material necessary for zygote formation of a unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Front. Plant Sci., 7, 1040 (article ID).
Keywords: charophycean; Closterium; conjugation; gamete; Concanavalin A (Con A); sexual reproduction
Strain(s): 6768 
PubMed: 27468295
DOI: 10.3389/fpls.2016.01040
Abe, J., Hori, S., Tsuchikane, Y., Kitao, N., Kato, M., Shiraiwa, H. 2011 Stable nuclear transformation of the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 52, 1676-1685.
Strain(s): 6768 
PubMed: 21804095
DOI: 10.1093/pcp/pcr103
Abe, J., Kubo, T., Takagi, Y., Saito, T., Miura, K., Fukuzawa, H., Matsuda, Y. 2004 The transcriptional program of synchronous gametogenesis in Chlamydomonas reinhardtii. Curr. Genet., 46, 304-315.
Strain(s): 2235 
PubMed: 15459796
DOI: 10.1007/s00294-004-0526-4
Abe, T., Tsuzuki, M., Kaplan, A., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. II. Effect of sodium concentration during growth on the induction of active transport system for IC. Plant Cell Physiol., 28, 671-677.
Keywords: Anabaena variabilis; CO2 accumulation; cyanobacterial growth; photosynthesis; sodium
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077343
Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. III. Some characteristics of the HCO3-transport system in cells grown under ordinary air. Plant Cell Physiol., 28, 867-874.
Keywords: Anabaena; carbonic anhydrase; IC transport; photosynthesis; sodium
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077368
Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis of Anabaena grown under ordinary air. I. Active species of inorganic carbon utilized for photosynthesis. Plant Cell Physiol., 28, 273-281.
Keywords: Anabaena; carbon dioxide fixation; cyanobacterium; IC transport photosynthesis
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077293
Abeynayaka, HDL., Asaeda, T., Rashid, MH. 2018 Effects of elevated pressure on Pseudanabaena galeata Böcher in varying light and dark environments. Environ. Sci. Pollut. Res., 25, 21224–21232.
Keywords: Cyanobacteria; Hydrostatic pressure; Pseudanabaena galeata Böcher; Prolonged darkness; Chlorophyll-a; Cell concentration
Strain(s): 512 
PubMed: 29779078
DOI: 10.1007/s11356-018-2218-5
Abram, M., Białek, R., Szewczyk, S., Karolczak, J., Gibasiewicz, K., Kargul, J. 2020 Remodeling of excitation energy transfer in extremophilic red algal PSI-LHCI complex during light adaptation. Biochim. Biophys. Acta-Bioenerg., 1861, 148093 (article ID).
Keywords: Photosystem I; Light harvesting complex I; Time-resolved fluorescence; Extremophilic red alga Cyanidioschyzon merolae; Light adaptation; Red chlorophylls
Strain(s): 1332 
PubMed: 31669460
DOI: 10.1016/j.bbabio.2019.148093
Agarkova, I. V., Lane, L. C., Dunigan, D. D., Quispe, C. F., Duncan, G. A., Milrot, E., Minsky, A., Esmael, A., Ghosh, J. F., Van Etten, J. L. 2021 Identification of a chlorovirus PBCV-1 protein involved in degrading the host cell wall during virus infection. Viruses-Basel, 13, 782 (article ID).
Keywords: Chlorella; Phycodnaviridae; chlorovirus; PBCV-1; algal lytic activity; cell wall degrading activity; alginate-like lyase
Strain(s): 25402541 
PubMed: 33924931
DOI: 10.3390/v13050782
Ahamefule, S. C., Ogbonna, J. C., Moneke, A. N., Ossai, N. I. 2018 Application of photosynthetic microalgae as efficient pH bio-stabilizers and bio-purifiers in sustainable aquaculture of Clarias gariepinus (African catfish) fry. Nig. J. Biotech., 35, 139-150.
Keywords: nitrogen removal; ammonia; nitrite; fishery; fish pond
Strain(s): 93 
DOI: 10.4314/njb.v35i2.17
Aida, T. M., Nonaka, T., Fukuda, S., Kujiraoka, H., Kumagai, Y., Maruta, R., Ota, M., Suzuki, I., Watanabe, M. M., Inomata, H., Smith Jr., R. L. 2016 Nutrient recovery from municipal sludge for microalgae cultivation with two-step hydrothermal liquefaction. Algal Res., 18, 61-68.
Keywords: Biosolid treatment process; High temperature water; Internal recycle; Wastewater treatment; Microalgae cultivation
Strain(s): 48 
DOI: 10.1016/j.algal.2016.06.009
Aikawa, S., Ho, S-H., Nakanishi, A., Chang, J-S., Hasunuma, T., Kondo, A. 2015 Improving polyglucan production in cyanobacteria and microalgae via cultivation design and metabolic engineering. Biotechnol. J., 10, 886-898.
Keywords: Bioethanol; Cyanobacteria; Metabolic engineering; Microalgae; Polyglucan
Strain(s): 39 
PubMed: 25867926
DOI: 10.1002/biot.201400344
Aikawa, S., Inokuma, K., Wakai, S., Sasaki, K., Ogino, C., Chang, J-S., Hasunuma, T., Kondo, A. 2018 Direct and highly productive conversion of cyanobacteria Arthrospira platensis to ethanol with CaCl2 addition. Biotechnol. Biofuels, 11, 50 (article ID).
Keywords: Ethanol conversion; Glycogen extraction; Cyanobacteria; Amylase-displaying yeast; Polysaccharide layer; Organic nutrient
Strain(s): 39 
PubMed: 29492105
DOI: 10.1186/s13068-018-1050-y
Aikawa, S., Izumi, Y., Matsuda, F., Hasunuma, T., Chang, J.-S., Kondo, A. 2012 Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply. Bioresour. Technol., 108, 211-215.
Keywords: Arthrospira platensis; Glycogen; Cyanobacteria; Light intensity; Nitrogen starvation
Strain(s): 39 
PubMed: 22277210
DOI: 10.1016/j.biortech.2012.01.004
Aikawa, S., Joseph, A., Yamada, R., Izumi, Y., Yamagishi, T., Matsuda, F., Kawai, H., Chang, J.-S., Hasunuma, T., Kondo, A. 2013 Direct conversion of Spirulina to ethanol without pretreatment or enzymatic hydrolysis processes. Energ. Environ. Sci., 6, 1844-1849.
Strain(s): 39 
DOI: 10.1039/C3EE40305J
Aizawa, K., Miyachi, S. 1986 Carbonic anhydrase and CO2 concentrating mechanisms in microalgae and cyanobacteria. FEMS Microbiol. Lett., 39, 215-233.
Keywords: aquatic algae; cyanobacteria; photoautotrophs; photorespiration; photosynthesis; transport
Strain(s): 2093216021732235 
DOI: 10.1111/j.1574-6968.1986.tb01860.x
Aizawa, K., Nakamura, Y., Miyachi, S. 1985 Variation of phosphoenolpyruvate carboxylase activity in Dunaliella associated with changes in atmospheric CO2 concentration. Plant Cell Physiol., 26, 1199-1203.
Keywords: carbonic anhydrase; Dunaliella; phosphoenolpyruvate carboxylase; photosynthesis; Porphyridium
Strain(s): 2138 
DOI: 10.1093/oxfordjournals.pcp.a077016
Aizawa, K., Tsuzuki, M., Miyachi, S. 1986 Kinetic studies on fhe active species of inorganic carbon absorbed by the cells of Dunaliella tertiolecta. Plant Cell Physiol., 27, 37-47.
Keywords: bicarbonate utilization; carbon dioxide; carbonic anhydrase; cell surface; Dunaliella tertiolecta; photosynthesis
Strain(s): 2170 
Akao, S., Hosoi, Y., Fujiwara, T. 2014 Utilization of water chestnut for reclamation of water environment and control of cyanobacterial blooms. Environ. Sci. Pollut. Res., 21, 2249-2255.
Keywords: Nitrogen; Phosphorus; Phenolic compounds; Potassium; Trapa natans
Strain(s): 87 
PubMed: 24046225
DOI: 10.1007/s11356-013-2102-2
Akatsuka, S., Sekimoto, H., Iwai, H., Fukumoto, R., Fujii, T. 2003 Mucilage secretion regulated by sex pheromones in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 44, 1081-1087.
Keywords: Closterium; mucilage; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1093/pcp/pcg131
Akatsuka, S., Tsuchikane, Y., Fukumoto, R., Fujii, T., Sekimoto, H. 2006 Physiological characterization of the sex pheromone protoplast-release-inducing protein from the Closterium peracerosum-strigosum-littorale complex (Charophyta). Phycol. Res., 54, 116-121.
Keywords: Closterium; conjugation; mucilage; protoplast release; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1111/j.1440-1835.2006.00418.x
Akcaalan, R., Young, FM., Metcalf, JS., Morrison, LF., Albay, M., Codd, GA. 2006 Microcystin analysis in single filaments of Planktothrix spp. in laboratory cultures and environmental blooms. Water Res., 40, 1583-1590.
Keywords: Planktothrix rubescens; Planktothrix agardhii; Microcystin immunoassay; Single filaments; Cyanobacteria
Strain(s): 595 
DOI: 10.1016/j.watres.2006.02.020
Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2020 Anaerobic digestion effluent treatment using microalgae and nitrifiers in an outdoor raceway pond with fluidized carriers. Water Sci. Technol., 82, 1081–1091.
Keywords: high-ammonia-containing wastewater; immobilization; light-stress; microalgal-bacterial consortia; nitrification; photo-oxygenation
Strain(s): 2173 
DOI: 10.2166/wst.2020.226
Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2021 Nitrification of anaerobic digestate using a consortium of microalgae and nitrifiers in an open photobioreactor with moving bed carriers. Chemosphere, 263, 127948 (article ID).
Keywords: Bacterial immobilization; light attenuation; light stress; high-ammonia wastewater; photo-oxygenation
Strain(s): 2173 
PubMed: 33297018
DOI: 10.1016/j.chemosphere.2020.127948
Akizuki, S., Kishi, M., Cuevas-Rodríguez, G., Toda, T. 2020 Effects of different light conditions on ammonium removal in a consortium of microalgae and partial nitrifying granules. Water Res., 171, 115445 (article ID).
Keywords: Energy-saving process; Photo-oxygenation; Short-cut nitrogen removal; Ammonium removal pathway; Empirical model
Strain(s): 2173 
PubMed: 31954203
DOI: 10.1016/j.watres.2019.115445
Aktas, T. S., Fujibayashi, M., Takeda, F., Maruo, C., Nishimura, O. 2014 The role of rapid mixing condition on picophytoplankton floc growth. Desalin. Water Treat., 52, 1404-1413.
Keywords: Velocity gradient; Rapid mixing time; Picophytoplankton; Floc formation and breakage; Turbidity removal
Strain(s): 1348 
DOI: 10.1080/19443994.2013.787951
Aktas, T. S., Takeda, F., Maruo, C., Chiba, N., Nishimura, O. 2012 A comparison of zeta potentials and coagulation behaviors of cyanobacteria amd algae. Desalin. Water Treat., 48, 294-301.
Keywords: Zeta potential; Coagulation; Turbidity; Cyanobacteria; algae
Strain(s): 8713482170 
DOI: 10.1080/19443994.2012.698828
Alamsjah, M. A., Hirao, S., Ishibashi, F., Fujita , Y. 2005 Isolation and structure determination of algicidal compounds from Ulva fasciata. Biosci. Biotechnol. Biochem., 69, 2186-2192.
Keywords: algicidal compounds; Ulva fasciata; hexadeca-4,7,10,13-tetraenoic acid; octadeca-6,9,12,15-tetraenoic acid; α-linolenic acid
Strain(s): 15462 
PubMed: 16306701
DOI: 10.1271/bbb.69.2186
Alamsjah, M. A., Hirao, S., Ishibashi, F., Oda, T., Fujita, Y. 2008 Algicidal activity of polyunsaturated fatty acids derived from Ulva fasciata and U. pertusa (Ulvaceae, Chlorophyta) on phytoplankton. J. Appl. Phycol., 20, 713-720.
Keywords: Algicidal compound; Red tide phytoplankton; Ulva fasciata; Ulva pertusa
Strain(s): 137221251252254359381462486 
DOI: 10.1007/s10811-007-9257-5
Alamsjah, M. A., Ishibe, K., Kim, D., Yamaguchi, K., Ishibashi, F., Fujita, Y., Oda, T. 2007 Selective toxic effects of polyunsaturated fatty acids derived from Ulva fasciata on red tide phytoplankter species. Biosci. Biotechnol. Biochem., 71, 265-268.
Keywords: α-linolenic acid; linoleic acid; Ulva fasciata; red tide phytoplankter
Strain(s): 3 
PubMed: 17213644
DOI: 10.1271/bbb.60475
Al-Azab, A. J. S., Widyaningrum, D., Hirakawa, H., Hayashi, Y., Tanaka, S., Ohama, T. 2021 A resin cyanoacrylate nanoparticle as an acute cell death inducer to broad spectrum of microalgae. Algal Res., 54, 102191 (article ID).
Keywords: Cell death; Coccolith; Non-green algae; ROS; Poly (isobutylcyanoacrylate) nanoparticles
Strain(s): 15715274331534590615699712900101713081310241127642778 
DOI: 10.1016/j.algal.2021.102191
Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B. 2019 Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria. Extremophiles, 23, 635–647.
Keywords: Fischerella: Mastigocladus: Distribution: Thermophile: Nitrogen fxation: Photosynthesis: Multicellularity: Hot springs
Strain(s): 59237544106 
PubMed: 31512055
DOI: 10.1007/s00792-019-01125-4
Allen, M. B. 1959 Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte. Arch. Mikrobiol., 32, 270-277.
Strain(s): 298 
DOI: 10.1007/BF00409348
Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017 Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species. Algal Res., 21, 191-202.
Keywords: Astaxanthin productivity; Haematococcus pluvialis; Haematococcus rubicundus; Functional traits; Common-garden experiment; Intraspecific variation
Strain(s): 144 
DOI: 10.1016/j.algal.2016.10.021
Altenburger, R., Schmitt-Jansen, M., Riedl, J. 2008 Bioassays with unicellular algae: deviations from exponential growth and its implications for toxicity test results. J. Environ. Qual., 37, 16-21.
Strain(s): 4282 
PubMed: 18178874
DOI: 10.2134/jeq2006.0556
Anam, K., Rahman, D. Y., Hidhayati, N., Rachmayati, R., Susilaningsih, D., Agustini, N. W. S., Praharyawan, S., Susanti, H., Apriastini, M. 2021 Lipid accumulation on optimized condition through biomass production in green algae. IOP Conf. Ser.: Earth Environ. Sci., 762, 012075 (article ID).
Strain(s): 215221692170 
DOI: 10.1088/1755-1315/762/1/012075
Anas, A. R. J., Nakajima, A., Naruse, C., Tone, M., Asukabe, H., Harada, K. 2016 Determination of fVIIa-sTF inhibitors in toxic Microcystis cyanobacteria by LC-MS technique. Mar. Drugs, 14, 7 (article ID).
Keywords: cyanobacteria; toxic Microcystis; anticoagulant; fVIIa-sTF inhibitors; peptides; aeruginosins; blood coagulation cascade
Strain(s): 891021031072981025104310581071108510991133 
PubMed: 26729138
DOI: 10.3390/md14010007
Andemichael, H., Lee, J. W. 2016 Toxicological study of biofuel ethanol with blue green alga Spirulina platensis. Algal Res., 18, 110-115.
Keywords: Spirulina platensis; Biofuel ethanol; Cyanobacteria; Ethanol tolerance bioassay; Biofuel ethanol toxicological effect
Strain(s): 39 
DOI: 10.1016/j.algal.2016.05.032
Ando, D., Fujisawa, T., Katagi, T. 2017 Fate of flumioxazin in aquatic plants: Two algae (Pseudokirchneriella subcapitata, Synechococcus sp.), duckweed (Lemna sp.), and water milfoil (Myriophyllum elatinoides). J. Agric. Food Chem., 65, 8813-8822.
Keywords: aquatic plants; conjugation; flumioxazin; metabolism; sediment exposure; water exposure
Strain(s): 35937 
PubMed: 28920683
DOI: 10.1021/acs.jafc.7b03355
Ando, T., Nagase, H., Eguchi, K., Hirooka, T., Nakamura, T., Miyamoto, K., Hirata, K. 2007 A novel method using cyanobacteria for ecotoxicity test of veterinary antimicrobial agents. Environ. Toxicol. Chem., 26, 601-606.
Keywords: Antimicrobial agent; Cyanobacterium; Ecotoxicity test; Algal toxicity
Strain(s): 1923441073277 
PubMed: 17447543
DOI: 10.1897/06-195R.1
Ando, T., Otsuka, S., Nishiyama, M., Sendo, K., Watanabe, M. M., Matsumoto, S. 2003 Toxic effects of dichloromethane and trichloroethlene on the growth of planktonic green algae, Chlorella vulgaris NIES227, Selenastrum capricornutum NIES35, and Volvulina steinii NIES545. Microbes Environ., 18, 43-46.
Keywords: algal growth potential (AGP); bioindicator; dichloromethane; organic solvents; trichloroethlene
Strain(s): 35227545 
DOI: 10.1264/jsme2.18.43
Annoura, T., Nara, T., Makiuchi, T., Hashimoto, T., Aoki, T. 2005 The origin of dihydroorotate dehydrogenase genes of kinetoplastids, with special reference to their biological significance and adaptation to anaerobic, parasitic conditions. J. Mol. Evol., 60, 113-127.
Keywords: Dihydroorotate dehydrogenase; Trypanosoma cruzi Bodonid; Kinetoplastid; Euglenozoa; Phylogenetic tree; Gene fusion; Horizontal gene transfer; Anaerobiosis
Strain(s): 48 
PubMed: 15696374
DOI: 10.1007/s00239-004-0078-8
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Strain(s): 2675933974 
PubMed: 32457503
DOI: 10.1038/s41396-020-0670-y
Antonaru, L. A., Nurnberg, D. J. 2017 Role of PatS and cell type on the heterocyst spacing pattern in a filamentous branching cyanobacterium. FEMS Mircobiol. Lett., 364 fnx154 (article ID).
Keywords: multicellularity; cyanobacteria; Stigonematales; cell differentiation; nitrogen fixation; heterocyst spacing pattern; PatS
Strain(s): 59237543756 
PubMed: 28859320
DOI: 10.1093/femsle/fnx154
Antoshvili, M. Caspy, I., Hippler, M., Nelson, N. 2019 Structure and function of photosystem I in Cyanidioschyzon merolae. Photosynth. Res., 139, 499-508.
Keywords: Photosynthesis; Photosystem I; Crystal structure; Synechocystis; Cyanobacteria; Membrane complexes
Strain(s): 1084 
PubMed: 29582227
DOI: 10.1007/s11120-018-0501-4
Aoki, S., Miyachi, S. 1964 Chromatographic analysis of acid-soluble polyphosphates in Chlorella cells. Plant Cell Physiol., 5, 241-250.
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Strain(s): 109 
PubMed: 18332548
DOI: 10.2116/analsci.24.389
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Strain(s): 109275665 
PubMed: 18997376
DOI: 10.2116/analsci.24.1461
Aoshima, J., Kubota, M., Nishimura, T., Iwamura, T. 1984 DNA polymerases of Chlorella. II. Characterization to distinguish the two enzymes. J. Biochem., 96, 461-473.
Strain(s): 2170 
Aoshima, J., Nishimura, T., Iwamura, T. 1982 DNA polymerases of Chlorella. I. Chloroplastic and nuclear DNA polymerases in synchronized algal cells. Cell Struct. Funct., 7, 327-340.
Strain(s): 2170 
Aoyama, K., Iwahori, K., Miyata, N. 2003 Application of Euglena gracilis cells to comet assay: evaluation of DNA damage and repair. Mutat. Res. Genet. Toxicol. Environ. , 538, 155-162.
Keywords: Comet assay; Single-cell gel electrophoresis; Euglena gracilis; DNA damage; DNA repair
Strain(s): 49 
DOI: 10.1016/S1383-5718(03)00113-X
Aoyama, K., Miyata, N., Iwahori, K. 2005 Evalution of DNA damaging potential in landfill leachates by comet assay using Euglena gracilis. Jpn. J. Water Treat. Biol., 41, 73-81.
Keywords: comet assay; Euglena gracilis; landfill leachate; umu test
Strain(s): 49 
DOI: 10.2521/jswtb.41.73
Aoyama, K., Uemura, I., Miyake, J., Asada, Y. 1997 Fermentative metabolism to produce hydrogen gas and organic compounds in a cyanobacterium, Spirulina platensis. J. Ferment. Bioeng., 83, 17-20.
Keywords: Spirulina; hydrogen; organic acid; ethanol
Strain(s): 46 
DOI: 10.1016/S0922-338X(97)87320-5
Araie, H., Sakamoto, K., Suzuki, I., Shiraiwa, Y. 2011 Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta). Plant Cell Physiol., 52, 1204-1210.
Strain(s): 837 
PubMed: 21632656
DOI: 10.1093/pcp/pcr070
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Keywords: Multicellularity; Volvocine algae; Tetrabaena socialis; DRP1
Strain(s): 5714121 
PubMed: 29212441
DOI: 10.1186/s12862-017-1091-z
Arakaki, Y., Kawai-Toyooka, H., Hamamura, Y., Higashiyama, T., Noga, A., Hirono, M., Olson, B. J. S. C., Nozaki, H. 2013 The simplest integrated multicellular organism unveiled. PLoS One, 8, e81641 (article ID).
Strain(s): 571 
PubMed: 24349103
DOI: 10.1371/journal.pone.0081641
Archibald, P. A. 1975 Trebouxia de Pulmaly (Chlorophyceae, Chlorococcales) and Pseudotrebouxia gen. nov. (Chlorophyceae, Chlorosarcinales). Phycologia, 14, 125-137.
Strain(s): 21832185218621872188 
DOI: 10.2216/i0031-8884-14-3-125.1
Arii, S., Yamashita, R., Tsuji, K., Tomita, K., Hasegawa, M., Bober, B., Harada, K. 2021 Differences in susceptibility of cyanobacteria species to lytic volatile organic compounds and influence on seasonal succession. 284, 284, 131378 (article ID).
Keywords: Susceptibility; Volatile organic compounds (VOCs); β-Cyclocitral; Minimal inhibitory concentration (MIC); Seasonal succession
Strain(s): 10211229880884316421652167716961728 
PubMed: 34217930
DOI: 10.1016/j.chemosphere.2021.131378
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Kinoshita, E., Suzaki, T. 2002 Ca2+-dependent cytoplasmic contractility of the heliozoan Actinophrys sol. Eur. J. Protistol., 38, 365-372.
Keywords: Cell model; Permeabilization; Contractile tubules; Heliozoa; Protozoa
Strain(s): 2497 
DOI: 10.1078/0932-4739-00879
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2005 Ca2+-dependent nuclear contraction of heliozoan Actinophrys sol. Cell Calcium, 38, 447-455.
Strain(s): 2497 
PubMed: 16099499
DOI: 10.1016/j.ceca.2005.06.034
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Ca2+-dependent in vivo contractility of a precipitate isolated from an extract of the heliozoan Actinophrys sol. Cell Motil. Cytoskeleton, 63, 57-65.
Keywords: contraction; precipitate; heliozoan; protozoa
Strain(s): 2497 
PubMed: 16362955
DOI: 10.1002/cm.20106
Arima, H., Horiguchi, N., Takaichi, S., Kofuji, R., Ishida, K-I., Wada, K., Sakamoto, T. 2012 Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species. FEMS Microbiol. Ecol., 79, 34-45.
Keywords: Anhydrobiosis; carotenoid; ferredoxin-NADP; oxidoreductase; nitrate/nitrite transporter; random amplified polymorphic DNA; water stress protein
Strain(s): 24282107210825382539 
PubMed: 22066798
DOI: 10.1111/j.1574-6941.2011.01195.x
Aruga, Y. 1965 Ecological studies of photo-synthesis and matter production of phytoplankton II. Photosynthesis of algae in relation to light intensity and temperature. Bot. Mag. Tokyo, 78, 360-365.
Strain(s): 19 
Asada, C., Doi, K., Sasaki, C., Nakamura, Y. 2012 Efficient extraction of starch from microalgae using ultrasonic homogenizer and its conversion into ethanol by simultaneous saccharification and fermentation. Natural Resources, 3, 175-179
Keywords: Bioethanol; Microalgae; Ultrasonic Treatment; Homoginizer; Starch
Strain(s): 437 
DOI: 10.4236/nr.2012.34023
Asada, Y., Kawamura, S. 1986 Screening for cyanobacteria that evolve molecular hydrogen under dark and anaerobic conditions. J. Ferment. Technol., 64, 553-556.
Strain(s): 19212336394621193277 
DOI: 10.1016/0385-6380(86)90081-6
Asada, Y., Kawamura, S., Ho, K.-K. 1987 Hydrogenase from the unicellular cyano-bacterium, Microcystis aeruginosa. Phytochemistry, 26, 637-640.
Keywords: Microcystis aeruginosa; cyanobacterium; hydrogenase; purification; properties
Strain(s): 44 
DOI: 10.1016/S0031-9422(00)84756-1
Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1998 Chemiluminescence flow-injection system for rapid detection of red tide phytoplankton, Chattonella antiqua. Anal. Lett., 31, 2279-2288.
Keywords: chemiluminescence; flow injection; superoxide; luciferin analogue; red tide
Strain(s): 113 
DOI: 10.1080/00032719808005302
Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1999 Highly sensitive chemiluminescence flow-injection detection of the red tide phytoplankton Heterosigma carterae. Anal. Chim. Acta, 390, 237-244.
Keywords: Chemiluminescence; Flow injection analysis; Red tide phytoplankton; Superoxide; Hydrogen peroxide; Heterosigma carterae
Strain(s): 6586 
DOI: 10.1016/S0003-2670(99)00145-2
Asai, R., Ootani, K., Nomura, Y., Nakamura, C., Ikebukuro, K., Arikawa, Y., Miyake, J., Karube, I. 2003 PCR-based ribosomal DNA detection technique for microalga (Heterosigma carterae) causing red tide and its application to a biosensor using labeled probe. Mar. Biotechnol., 5, 417-423.
Keywords: small subunit rDNA; Heterosigma carterae; fluorescence polarization; asymmetric polymerase chain reaction; surface plasmon resonance
Strain(s): 144 
PubMed: 14730424
DOI: 10.1007/s10126-002-0081-2
Asamizu, E., Miura, K., Kucho, K., Inoue, Y., Fukuzawa, H., Ohyama, K., Nakamura, Y., Tabata, S. 2000 Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii. DNA Res., 7, 305-307.
Keywords: Chlamydomonas reinhardtii; cDNA; EST; CO2 stress
Strain(s): 2235 
PubMed: 11089912
DOI: 10.1093/dnares/7.5.305
Asamizu, E., Nakamura, Y., Miura, K., Fukuzawa, H., Fujiwara, S., Hirono, M., Iwamoto, K., Matsuda, Y., Minagawa, J., Shimogawara, K., Takahashi, Y., Tabata, S. 2004 Establishment of publicly available cDNA material and information resource of Chlamydomonas reinhardtii (Chlorophyta), to facilitate gene function analysis. Phycologia, 43, 722-726.
Strain(s): 2235 
DOI: 10.2216/i0031-8884-43-6-722.1
Asamizu, E., Nakamura, Y., Sato, S., Fukuzawa, H., Tabata, S. 1999 A large scale structure analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags. DNA Res., 6, 369-373.
Keywords: green alga; Chlamydomonas reinhardtii; cDNA; EST; normalized library; similarity search
Strain(s): 2235 
PubMed: 10691129
DOI: 10.1093/dnares/6.6.369
Aso, M., Matsumae, R., Tanaka, A., Tanaka, R., Takabayashi, A. 2021 Unique peripheral antennas in the photosystems of the streptophyte alga Mesostigma viride. Plant Cell Physiol., 62, 436–446.
Keywords: Green algae; Iso-seq; Mesostigma viride; Native-PAGE; Photosystem
Strain(s): 296 
PubMed: 33416834
DOI: 10.1093/pcp/pcaa172
Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578.
Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling
Strain(s): 27394273818789100101102103104105107111112207208230266298416433478510512515592593604611808809835843846847905928931932945981989102510431058106110641068106910711076108510991101110511131115112611331134113511441157121516421643165216681672167316771678169820872131241226653708373337343736375537563757 
PubMed: 32501712
DOI: 10.1021/jasms.0c00148
Azaman, S. N. A., Wong, D. C. J., Tan, S. W., Yusoff, F. M., Nagao, N., Yeap, S. K. 2020 De novo transcriptome analysis of Chlorella sorokiniana: effect of glucose assimilation, and moderate light intensity. Sci Rep, 10, 17331 (article ID).
Strain(s): 2168 
PubMed: 33060668
DOI: 10.1038/s41598-020-74410-4
Azizi, M., Moteshafi, H., Hashemi, M. 2020 A novel CO2 steady feeding based on the pH steady strategy data in the Haematococcus pluvialis cultivation to maximize the cell growth and carbon bio-sequestration. Bioresour. Technol., 314, 123752 (article ID).
Keywords: Haematococcus pluvialis; CO2 feeding; Productivity; CO2 bio-fixation; RuBisCO activity
Strain(s): 144 
PubMed: 32629377
DOI: 10.1016/j.biortech.2020.123752
Azizi, M., Moteshafi, H., Hashemi, M. 2020 Distinctive nutrient designs using statistical approach coupled with light feeding strategy to improve the Haematococcus pluvialis growth performance and astaxanthin accumulation. Bioresour. Technol., 300, 122594 (article ID).
Keywords: H. pluvialis; Astaxanthin; Nutrients designing; Optimization; Light-feeding strategy
Strain(s): 144 
PubMed: 31901774
DOI: 10.1016/j.biortech.2019.122594
Bae, E. H., Kang, J.-H., Park, C.-S. 2020 New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae). Journal of Species Research, 9, 210-217.
Keywords: 16S rRNA; Microseira wollei; morphology; unrecorded
Strain(s): 4236 
DOI: 10.12651/JSR.2020.9.3.210
Baker, J. A., Entsch, B., McKay, D. B. 2003 The cyanobiont in an Azolla fern is neither Anabaena nor Nostoc. FEMS Mircobiol. Lett., 229, 43-47.
Keywords: Azolla fern; Cyanobacterial symbiont; Phylogenetic relationship
Strain(s): 4080 
PubMed: 14659541
DOI: 10.1016/S0378-1097(03)00784-5
Baldia, S. F., Fukami, K., Nishijima, T., Hata, T. 1995 Growth responses of Spirulina platensis to some physico-chemical factors and the kinetics of phosphorus utilization. Fish. Sci., 61, 331-335.
Keywords: Spirulina platensis; growth kinetics; physico-chemical factors; organic phosphorus; waste water
Strain(s): 46 
DOI: 10.2331/fishsci.61.331
Baldia, S. F., Nishijima, T., Fukami, K., Hata, Y. 1994 Studies on the chemical composition of a cyanophyte, Spirulina platensis. In The Third Asian Fisheries Forum, Eds. by Chou, L. M., et al., Asian Fisheries Society, Manila, Philippines, 1994, pp. 940-943.
Strain(s): 46 
Ban, S. 1992 Effects of photoperiod, temperature, and population density on induction of diapause egg production in Eurytemora affinis (Copepoda: Calanoida) in Lake Ohnuma, Hokkaido, Japan. J. Crustacean Biol., 12, 361-367.
Keywords: Eggs; Diapause; Female animals; Photoperiod; Nauplii; Egg production; Lakes; Population density; Autumn; Animals
Strain(s): 2822235 
DOI: 10.2307/1549029
Ban, S. 1994 Effect of temperature and food concentration on post-embryonic development, egg production and adult body size of calanoid copepod Eurytemora affinis. J. Plankton Res., 16, 721-735.
Strain(s): 282 
DOI: 10.1093/plankt/16.6.721
Ban, S., Minoda, T. 1994 Induction of diapause egg production in Eurytemora affinis by their own metabolites. Hydrobiologia, 292/293, 185-189.
Keywords: crowding effect; metabolites; diapause induction; Eurytemora affinis
Strain(s): 282 
DOI: 10.1007/978-94-017-1347-4_25
Baqué, M., Napoli, A., Fagliarone, C., Moeller, R., de Vera, J. P., Billi, D. 2020 Carotenoid raman signatures are better preserved in dried cells of the desert cyanobacterium Chroococcidiopsis than in hydrated counterparts after high-dose gamma irradiation. Life-Basel, 10, 83 (article ID).
Keywords: biosignatures; extremophiles; ionizing radiation; Raman spectroscopy; cyanobacteria; Mars exploration
Strain(s): 252100407341034105 
PubMed: 32521820
DOI: 10.3390/life10060083
Barcytė, D., Eikrem, W., Engesmo, A., Seoane, S., Wohlmann, J., Horák, A., Yurchenko, T., Eliáš, M. 2021 Olisthodiscus represents a new class of Ochrophyta. J. Phycol., 57, 1094-1118.
Strain(s): 15 
PubMed: 33655496
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Baresova, M., Pivokonsky, M., Novotna, K., Naceradska, J., Branyik, T. 2017 An application of cellular organic matter to coagulation of cyanobacterial cells (Merismopedia tenuissima). Water Res., 122, 70-77.
Keywords: Algal cellular organic matter; Coagulation; Cyanobacterial cells; Merismopedia tenuissima; Water treatment
Strain(s): 230 
PubMed: 28591663
DOI: 10.1016/j.watres.2017.05.070
Bass, D., Howe, A. T., Mylnikov, A. P., Vickerman, K., Chao, E. E., Smallbone, J. E., Snell, J., Cabral Jr., C., Cavalier-Smith, T. 2009 Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.. Protist, 160, 483-521.
Keywords: Cercomonas; Eocercomonas; Paracercomonas; Cavernomonas; 18S rDNA phylogeny; Agitata
Strain(s): 243424352436243724382439244024412442244324442445244924502451245224532454 
PubMed: 19589724
DOI: 10.1016/j.protis.2009.01.004
Batista, A. M. M., Woodhouse, J. N., Grossart, H.-P., Giani, A. 2019 Methanogenic archaea associated to Microcystis sp. in field samples and in culture. Hydrobiologia, 831, 1–4.
Keywords: Cyanobacteria; Methanogenic archaea; Bacterial community composition; Microcystis sp.; Tropical reservoir
Strain(s): 1011021114 
DOI: 10.1007/s10750-018-3655-3
Becker, B., Melkonian, M. 1991 2-keto-sugar acids in green flagellates: A chemical marker for prasinophycean scales. J. Phycol., 27, 498-504.
Keywords: cell wall composition; Chlorophyta; 2-keto-sugar acids; Prasinophyceae; scale composition
Strain(s): 2253 
DOI: 10.1111/j.0022-3646.1991.00498.x
Belmans, D., Laere, A. V. 1988 Effect of ionophores on the ATP-pool and glycerol content in cells of the halotolerant green alga Dunaliella tertiolecta. J. Gen. Microbiol., 134, 2261-2268.
Strain(s): 2258 
DOI: 10.1099/00221287-134-8-2261
Beltran, E. C., Neilan, B. 2000 Geographical segregation of the neurotoxin-producing cyanobacterium Anabaena circinalis. Appl. Environ. Microbiol., 66, 4468-4474.
Strain(s): 192123404180 
PubMed: 11010900
DOI: 10.1128/AEM.66.10.4468-4474.2000
Bendif, E. M., Probert, I., Carmichael, M., Romac, S., Hagino, K., de Vardas, C. 2014 Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huzleyi and Gephyrocapsa. J. Phycol., 50, 140-148.
Keywords: coccolithophore; DNA barcoding; Emiliania huxleyi; Gephyrocapsa oceanica; phylogeny; species complex
Strain(s): 10002697 
PubMed: 26988015
DOI: 10.1111/jpy.12147
Beneragama, C. K., Chamara, R. M. S. R., Kumara, G. D. K., Goto, K. 2019 Intraspecific plasticity in circadian rhythms within Euglena gracilis Int. J. Appl. Sci. Biotechnol., 7, 207-216.
Keywords: Euglena gracilis; Circadian rhythms; Intraspecific Plasticity
Strain(s): 48 
DOI: 10.3126/ijasbt.v7i2.24278
Benico, G., Takahashi, K., Lum, W. M., Iwataki, M. 2019 Morphological variation, ultrastructure, pigment composition and phylogeny of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae, Dinophyceae). Phycologia, 58, 405-418.
Keywords: 19′-Hexanoyloxyfucoxanthin; Apical structure complex (ASC); Brachidinium; Chloroplast; Karenia; Karlodinium; Pyrenoid; Takayama
Strain(s): 4329 
DOI: 10.1080/00318884.2019.1601948
Benke, P. I., Vinay Kumar, M. C. S., Pan, D., Swarup, S. 2015 A mass spectrometry-based unique fragment approach for the identification of microcystins. Analyst, 140, 1198-1206.
Strain(s): 843 
PubMed: 25525642
DOI: 10.1039/c4an01702a
Berge, T., Daugbjerg, N., Hansen, P. J. 2012 Isolation and cultivation of microalgae select for low growth rate and tolerance to high pH. Harmful Algae, 20, 101-110.
Keywords: Culture; Growth rates; Harmful algal blooms; Heterocapsa triquetra; Interspecific variation; Laboratory selection; pH; Phytoplankton; Species; Strains
Strain(s): 7235 
DOI: 10.1016/j.hal.2012.08.006
Berney, C., Geisen, S., Van Wichelen, J., Nitsche, F., Vanormelingen, P., Bonkowski, M., Bass, D. 2015 Expansion of the 'reticulosphere': diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist, 166, 271-295.
Keywords: Network-forming amoebae; reticulate; Variosea; Amoebozoa; molecuar phylogeny; SSU rDNA
Strain(s): 3722 
PubMed: 25965302
DOI: 10.1016/j.protis.2015.04.001
Bertuzz, S., Gustavs, L., Pandolfini, G., Tretiac, M. 2017 Heat shock treatments for the control of lithobionts: A case study with epilithic green microalgae. Int. Biodeterior. Biodegrad., 123, 236-243.
Keywords: Biocides; Biodeteriogens; Chlorophyll a fluorescence; Hydration; Polyols; Non-reducing sugars
Strain(s): 2166 
DOI: 10.1016/j.ibiod.2017.06.023
Bhattacharjee, S., Mishra, A. K. 2020 The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria. J. Exp. Bot., 71, 4639-4657.
Keywords: Altruistic adaptation; caspase homologues; horizontal gene transfer; orthocaspases, PCD morphotypes; programmed cell death
Strain(s): 843 
DOI: 10.1093/jxb/eraa213
Bhuiyan, MAH., Faria, DG., Horiguchi, T., Sym, SD., Suda, S. 2015 Taxonomy and phylogeny of Pyramimonas vacuolata sp. nov. (Pyramimonadales, Chlorophyta). Phycologia, 54, 323–332.
Keywords: 18S rDNA sequence; Morphology; Phylogeny; Pyramimonas; Pyramimonas vacuolata sp. nov.; rbcL; Taxonomy; Ultrastructure
Strain(s): 3400 
DOI: 10.2216/15-004.1
Bibby, T. S., Mary, I., Nield, J., Partensky, F., Barber, J. 2003 Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem. Nature, 424, 1051-1054.
Strain(s): 28802887 
PubMed: 12944966
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Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souzade, C., Pinto, E., Hansen, P. J., Larsen, T. O., Varga, E. 2019 A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum. Harmful Algae, 81, 10-17.
Keywords: Chemotaxonomy; Prymnesium parvum; ITS-sequencing; High resolution mass spectrometry; Prymnesin
Strain(s): 101710181812 
PubMed: 30638493
DOI: 10.1016/j.hal.2018.11.010
Blanc, G., Agarkova, I., Grimwood, J., Kou, A., Brueggeman, A., Dunigan, D. D., Gurnon, J., Ladunga, I., Lindquist, E., Lucas, S., Pangilinan, J., Proschold, T., Salamov, A., Schmutz, J., Weeks, D., Yamada, T., Lomsadze, A., Borodovsky, M., Claverie, J. M., Grigoriev, I. V., Van Etten, J. L. 2012 The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 13, R39 (article ID).
Strain(s): 2166 
PubMed: 22630137
DOI: 10.1186/gb-2012-13-5-r39
Bock, N. A., Charvet, S., Burns, J., Gyaltshen, Y., Rozenberg, A., Duhamel ,S., Kim, E. 2021 Experimental identification and in silico prediction of bacterivory in green algae. ISME J., 15, 1987-2000.
Strain(s): 254296626995 
PubMed: 33649548
DOI: 10.1038/s41396-021-00899-w
Boo, S. M., Kim, H. S., Shin, W., Boo, G. H., Cho, S. M., Jo, B. Y., Kim, J.-H., Kim, J. H., Yang, E. C., Siver, P. A., Wolfe, A. P., Bhattacharya, D., Andersen, R. A., Yoon, H. S. 2010 Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Mol. Ecol., 19, 4328-4338.
Keywords: biogeography; endemism; Synura; Synurophyceae; ubiquity hypothesis
Strain(s): 2331007 
PubMed: 25241409
DOI: 10.1111/j.1365-294X.2010.04813.x
Boonmak, P., Liu, X., Ban, S., Sanoamuang, L. 2018 Effects of different algal diets and carbon supplies on larval development, growth and survival in the freshwater copepod Mongolodiaptomus malaindosinensis (Copepoda: Calanoida). Plankton Benthos Res., 13, 163-172.
Keywords: Chlamydomonas reinhardtii; Cryptomonas tetrapyrenoidosa; post-embryonic development; tropical copepod; zooplankton
Strain(s): 282 
DOI: 10.3800/pbr.13.163
Bouchier, C., Hertweck, C., de Marsac, N. T., Dittmann, E. 2008 Microcyclamide biosynthesis in two strains of Microcystis aeruginosa: from structure to genes and vice versa. Appl. Environ. Microbiol., 74, 1791-1797.
Strain(s): 298 
PubMed: 18245249
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Bowers, H. A., Tomas, C., Tengs, T., Kempton, J. W., Lewitus, A. J., Oldach, D. W. 2006 Raphidophyceae [Chadefaud ex Silva] systematics and rapid identification: sequence analyses and real-time PCR assays. J. Phycol., 42, 1333-1348.
Keywords: Chattonella; Fibrocapsa; Heterosigma; PCR; Raphidophyceae; Taqman
Strain(s): 670 
DOI: 10.1111/j.1529-8817.2006.00285.x
Bowler, C. et al. 2008 The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 39–244.
Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements
Strain(s): 4392 
PubMed: 18923393
DOI: 10.1038/nature07410
Brand, J. J., Wright, J. N. 1989 Hydrogen production by eukaryotic algae. Biotech. Bioeng., 33, 1482-1488.
Strain(s): 2151216921902194220122022203220422112213221922792291 
Brito, M. L. M., Han, W. Q., Li, G. Q. 2019 Effects of diurnal fluctuation of temperature on growth, photosynthetic activity response of two morphotypes cells of Emiliania huxleyi. Indian J. Mar. Sci., 48, 349-356.
Keywords: Calcified cells (C-Cells); Coccoliths; Emiliania huxleyi (E. huxleyi); Morphotypes cells; Naked cells (N-Cells); PAM fluorometry
Strain(s): 1318 
Brooks, A. E. 1966 The sexual cycle and intercrossing in the genus Astrephomene. J. Protozool., 13, 367-375.
Strain(s): 853854855 
DOI: 10.1111/j.1550-7408.1966.tb01922.x
Brown, I. I., Mummey, D., Cooksey. K. E. 2005 A novel cyanobacterium exhibiting an elevated tolerance for iron. FEMS Microbiol. Ecol., 52, 307-314.
Keywords: Novel cyanobacterium; Iron tolerance; Iron depositing hot spring; Great Yellowstone area
Strain(s): 1031 
DOI: 10.1016/j.femsec.2004.11.020
Buchmanna, K., Becker, B. 2009 The system of contractile vacuoles in the green alga Mesostigma viride (Streptophyta). Protist, 160, 427-443.
Keywords: Mesostigma viride; Streptophyta; contractile vacuole; 3-D reconstruction; transmission electron microscopy
Strain(s): 476 
PubMed: 19356977
DOI: 10.1016/j.protis.2009.01.002
Bürger, J., Miyachi, S., Galland, P., Senger, H. 1988 Quantum requirements of photosynthetic oxygen evolution and 77K fluorescence emission spectra in unicellular green algae grown under low- and high-CO2-conditions. Botanica Acta, 101, 229-232.
Strain(s): 21732235 
DOI: 10.1111/j.1438-8677.1988.tb00037.x
Busch, A., Nield, J., Hippler, M. 2010 The composition and structure of photosystem I-associatied antenna from Cyanidioschyzon merolae. Plant J., 62, 886-897.
Keywords: Cyanidioschyzon merolae; Lhcr; photosystem I; phycobilisomes; proteomics
Strain(s): 3377 
PubMed: 20230507
DOI: 10.1111/j.1365-313X.2010.04202.x
Butler, T., Golan, Y. 2020 Astaxanthin production from microalgae. In Microalgae biotechnology for food, health and high value products, Eds. by Alam, Md. A., Xu, J-L., Wang, Z., Springer, Singapore, pp. 175-242.
Keywords: Astaxanthin; Contamination; Biomass; Bioreactors; Extraction; H. pluvialis
Strain(s): 144 
DOI: 10.1007/978-981-15-0169-2_6
Cadel-Six, S., Dauga, C., Castets, A. M., Rippka, R., Bouchier, C., de Marsac, N. T., Welker, M. 2008 Halogenase genes in nonribosomal peptide synthetase gene clusters of Microcystis (Cyanobacteria): sporadic distribution and evolution. Mol. Biol. Evol., 25, 2031-2041.
Keywords: halogenase; cyanopeptolin; aeruginosin; DNA rearrangement; secondary peptide metabolite; chlorination; internal transcribed spacer; phylogeny
Strain(s): 8998101102298 
PubMed: 18614525
DOI: 10.1093/molbev/msn150
Canini, A., Civitareale, P., Marini, S., Grilli Caiola, M., Rotilio, G. 1992 Purification of iron superoxide dismutase from the cyano-bacterium Anabaena cylindrica Lemm. and localization of the enzyme in heterocysts by immunogold labeling. Planta, 187, 438-444.
Keywords: Anabaena; heterocyst; iron-superoxide dismutase (immunogold labeling)
Strain(s): 19 
PubMed: 24178137
DOI: 10.1007/BF00199961
Cannell, R. J. P., Owsianka, A. M., Walker, J. M. 1988 Results of a large-scale screening programme to detect antibacterial activity from freshwater algae. Br. Phycol. J., 23, 41-44.
Strain(s): 6862287 
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Cao, H., Shimura, Y., Kawachi, M., Yin, Y. 2014 Draft genome sequence of the toxic bloom-forming cyanobacterium Aphanizomenon flos-aquae NIES-81. GenomeA, 2, e00044-14 (article ID).
Strain(s): 81 
PubMed: 24526634
DOI: 10.1128/genomeA.00044-14
Cao, H., Shimura, Y., Steffen, M. M., Yang, Z., Lu, J., Joel, A., Jenkins, L., Kawachi, M., Yin, Y., Garcia-Pichel, F. 2020 The trait repertoire enabling cyanobacteria to bloom assessed through comparative genomic complexity and metatranscriptomics. mBio, 11, e01155-20 (article ID).
Keywords: Symbiodiniaceae; Durusdinium trenchii; WGS; MAAs; GMC oxidoreductase
Strain(s): 81843 
PubMed: 32605986
DOI: 10.1128/mBio.01155-20
Carbone, D. A., Pellone, P., Lubritto, C., Ciniglia, C. 2021 Evaluation of microalgae antiviral activity and their bioactive compounds. Antibiotics-Basel, 10, 746 (article ID).
Keywords: microalgae; virus; antiviral compounds; SARS-CoV-2; microalgae antiviral activity; coronavirus disease
Strain(s): 204 
PubMed: 34202941
DOI: 10.3390/antibiotics10060746
Cardol, P., Bailleul, B., Rappaport, F., Derelle, E., Béal, D., Breyton, C., Bailey, S., Wollman, F. A., Grossman, A., Moreau, H., Finazzi, G. 2008 An original adaptation of photosynthesis in the marine green alga Ostreococcus. Proc. Nati. Acad. Sci. U. S. A., 105, 7881-7886.
Keywords: marine environment; PTOX; water cycle; eletron flow; photoprotection
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PubMed: 18511560
DOI: 10.1073/pnas.08027621
Carefoot, J. R. 1966 Sexual reproduction and intercrossing in Volvulina steinii. J. Phycol., 2, 150-156.
Strain(s): 896897898 
PubMed: 27053484
DOI: 10.1111/j.1529-8817.1966.tb04614.x
Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P., Johansen, J. R. 2020 Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique Nostocalean (Cyanobacteria) genus based on a polyphasic approach. J. Phycol., 56, 425-436.
Keywords: cyanobacteria; Phylogeny; 16S rDNA; systematics
Strain(s): 59237544106 
PubMed: 31837017
DOI: 10.1111/jpy.12954
Cattolico, R. A., Jacobs, M. A., Zhou, Y., Chang, J., Duplessis, M., Lybrand, T., McKay, J., Ong, H. C., Sims, E., Rocap, G. 2008 Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics, 9, 211-230.
Strain(s): 293 
PubMed: 18462506
DOI: 10.1186/1471-2164-9-211
Cellamare, M., Duval, C., Drelin, Y., Djediat, C., Touibi, N., Agogué, H., Leboulanger, C., Ader, M., Bernard, C. 2018 Characterization of phototrophic microorganisms and description of new cyanobacteria isolated from the saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean). FEMS Microbiol. Ecol., 94 fiy108 (article ID).
Keywords: cyanobacteria; microalgae; crater-lake; saline-alkaline lake; polyphasic approach; Arthrospira
Strain(s): 1410 
PubMed: 29878107
DOI: 10.1093/femsec/fiy108
Chamizo, S., Adessi, A., Certini, G., De Philippis, R. 2020 Cyanobacteria inoculation as a potential tool for stabilization of burned soils. Restor. Ecol., 28, S106-S114.
Keywords: biocrust; erosion; exopolysaccharide content; hydrophobicity; penetration resistance; wildfire
Strain(s): 19562121 
DOI: 10.1111/rec.13092
Chamizo, S., Adessi, A., Mugnai, G., Simiani, A., De Philippis, R. 2019 Soil type and cyanobacteria species influence the macromolecular and chemical characteristics of the polysaccharidic matrix in induced biocrusts. Microb. Ecol., 78, 482–493.
Keywords: Biological soil crust; Cyanobacteria inoculation; Molecular weight; Monosaccharide composition; Loosely bound; EPS; Tightly bound EPS
Strain(s): 19562121 
PubMed: 30535915
DOI: 10.1007/s00248-018-1305-y
Chamizo, S., Mugnai, G., Rossi, F., Certini, G., De Philippis, R. 2018 Cyanobacteria inoculation improves soil stability and fertility on different textured soils: Gaining insights for applicability in soil restoration. Front. Environ. Sci., 6, 49 (article ID).
Keywords: autotrophic organisms; biocrust development; exopolysaccharides; organic carbon; soil nitrogen, soil; degradation
Strain(s): 19562121 
DOI: 10.3389/fenvs.2018.00049
Chen, M., Rubin, G. M., Jiang, G., Raad, Z., Ding, Y. 2021 Biosynthesis and heterologous production of mycosporine-like amino acid palythines. J. Org. Chem., 86, 11160–11168.
Strain(s): 25 
PubMed: 34006097
DOI: 10.1021/acs.joc.1c00368
Chen, M., Tian, L.-L., Ren, C.-Y., Xu, C.-Y., Wang, Y.-Y., Li, L. 2019 Extracellular polysaccharide synthesis in a bloom-forming strain of Microcystis aeruginosa: implications for colonization and buoyancy. Sci Rep, 9, 1251 (article ID).
Strain(s): 87889820429884324812549 
PubMed: 30718739
DOI: 10.1038/s41598-018-37398-6
Cheng, T., Zhang, W., Xhang, W., Yuan, G., Wang, H., Liu, T. 2017 An oleaginous filamentous microalgae Tribonema minus exhibits high removing potential of industrial phenol contaminants. Bioresour. Technol., 238, 749-754.
Keywords: Oleaginous filamentous microalgae; Phenol removal; Phenol-uptake capacity; Residual phenol
Strain(s): 2175 
PubMed: 28526282
DOI: 10.1016/j.biortech.2017.05.040
Chernomor, O., Peters, L., Schneidewind, J., Loeschcke, A., Knieps-Grünhagen, E., Schmitz, F., von Lieres, E.,Kutta, R. J., Svensson, V., Jaeger, K., Drepper, T.,von Haeseler, A., Krauss, U. 2021 Complex evolution of light-dependent protochlorophyllide oxidoreductases in aerobic anoxygenic phototrophs: origin, phylogeny and function. Mol. Biol. Evol., 38, 819-837.
Keywords: light-driven enzyme; chlorophyll biosynthesis; evolution; aerobic anoxygenic phototrophic bacteria; photosynthesis
Strain(s): 9812135 
PubMed: 32931580
DOI: 10.1093/molbev/msaa234
Chihara, M., Inouye, I., Takahata, N. 1986 Oltmannsiellopsis., a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae). Arch. Protistenk., 132, 313-324.
Strain(s): 359360 
DOI: 10.1016/S0003-9365(86)80026-4
Chin, Y.-Y., Chu, W.-L., Kok, Y.-Y., Phang, S.-M., Wong, C.-Y., Tan, B.-K., Mustafa, E. M. 2019 Sensitivity of selected tropical microalgae isolated from a farmland and a eutrophic lake to atrazine and endosulfan. J. Appl. Phycol., 31, 2981–299.
Keywords: Atrazine; Endosulfan; Microalgae; Oxidative stress; Chlorella; Scenedesmus
Strain(s): 35 
DOI: 10.1007/s10811-019-01800-1
China, S., Fujii, K. 2018 Isolation of high-CO2-acclimated Micractinium sp. strains from eutrophic reservoir water. Algal Res., 34, 126-133.
Keywords: Micractinium sp.; High-CO2-acclimation; Vitamin; γ-Aminobutyric acid; C18 unsaturated fatty acid
Strain(s): 41294130 
DOI: 10.1016/j.algal.2018.07.015
Chiu, Y.-T., Yen, H.-K., Lin, T.-F. 2016 An alternativemethodtoquantify2-MIB producing cyanobacteriain in drinking water reservoirs: Method development and field applications. Environ. Res., 151, 618-627.
Keywords: Cyanobacteria; 2-methylisoborneol(2-MIB); 2-MIB-synthesis gene(mibC gene); Tasteandodor; Real-timePCR
Strain(s): 8151282490521042116 
PubMed: 27607443
DOI: 10.1016/j.envres.2016.08.034
Cho, Y., Hidema, S., Omura, T., Koike, K., Koike, K., Oikawa, H., Konoki, K., Oshima, Y., Yotsu-Yamashita, M. 2021 SxtA localizes to chloroplasts and changes to its 3′UTR may reduce toxin biosynthesis in non-toxic Alexandrium catenella (Group I). Harmful Algae, 101, 101972 (article ID).
Keywords: Saxitoxin; Biosynthesis; Dinoflagellate; Chloroplast; Localization; 3′UTR
Strain(s): 678 
PubMed: 33526188
DOI: 10.1016/j.hal.2020.101972
Cho, Y., Ozeki, R., Yotsu-Yamashita, M., Oshima, Y. 2013 Single-cell analysis of paralytic shellfish toxins in Alexandrium tamarense by HPLC with post-column fluorescent derivatization. Harmful Algae, 25, 47-53.
Keywords: Single-cell analysis; Alexandrium tamarense; Paralytic shellfish toxins
Strain(s): 678 
DOI: 10.1016/j.hal.2013.02.005
Cho, Y.-L., Lee, Y.-C., Hsu, L.-C., Wang, C.-C., Chen, P.-C., Liu, S.-L., Teah, H.-Y., Liu, Y.-T., Tzou, Y.-M. 2020 Molecular mechanisms for Pb removal by Cyanidiales: a potential biomaterial applied in thermo-acidic conditions. Chem. Eng. J., 401, 125828 (article ID).
Keywords: Cyanidiales; Thermoacidophilic; Lead; Speciation; XAS; Protein secondary structure
Strain(s): 5513377 
DOI: 10.1016/j.cej.2020.125828
Choi, G-G., Ahn, C-Y., Oh, H-M. 2012 Phylogenetic relationships of Arthrospira strains inferred from 16S rRNA gene and cpcBA-IGS sequences. Algae, 27, 75-82.
Keywords: Arthrospira (Spirulina); cpcBA-IGS; phylogenetic analysis; 16S rRNA gene
Strain(s): 3946 
DOI: 10.4490/algae.2012.27.2.075
Choi, H. I., Lee, J. S., Choi, J. W., Shin, Y. S., Sung, Y. J., Hong, M. E., Kwak, H. S., Kim, C. Y., Sim, S. J. 2019 Performance and potential appraisal of various microalgae as direct combustion fuel. Bioresour. Technol., 273, 341-349.
Keywords: Microalgae; Solid fuel; Direct combustion; The holistic analyses; Negative emissions
Strain(s): 144 
PubMed: 30448687
DOI: 10.1016/j.biortech.2018.11.030
Choi, H. J., Joo, J.-H., Kim, J.-H., Wang, P., Ki, J.-S. 2018 Morphological characterization and molecular phylogenetic analysis of Dolichospermum hangangense (Nostocales, Cyanobacteria) sp. nov. from Han River, Korea. Algae, 33, 143-156.
Keywords: Dolichospermum hangangense; morphology; rbcLX; 16S rRNA; 16S-23S ITS
Strain(s): 817168116831934 
DOI: 10.4490/algae.2018.33.5.2
Choi, K., Imai, A., Kim, B., Matsushige, K. 2001 Properties of dissolved organic carbon (DOC) released by three species of blue-green algae. Korean J. Limnol., 34, 20-29.
Keywords: extracellular organic carbon; fractionation; blue-green algae; growth phases
Strain(s): 4474204 
Choi, K., Ueki, M., Imai, A., Kim, B., Kawabata, Z. 2004 Photoalteration of dissolved organic matter (DOM) released from Microcystis aeruginosa in different growth phases: DOM-fraction distribution and biodegradability. Arch. Hydrobiol., 159, 271-286.
Keywords: algal DOM; growth phase; UV effects; photoalteration; biodegradability; chemical composition
Strain(s): 843 
DOI: 10.1127/0003-9136/2004/0159-0271
Choi, Y. Y., Joun, J. M., Lee, J., Hong, M. E., Pham, H., Chang, W. S., Sim, S. J. 2017 Development of large-scale and economic pH control system for outdoor cultivation of microalgae Haematococcus pluvialis using industrial flue. Bioresour. Technol., 244, 1235-1244.
Keywords: Haematococcus pluvialis; Astaxanthin; Polymeric thin-film photobioreactor; Autotrophic buffer system; Flue gas
Strain(s): 144 
PubMed: 28647321
DOI: 10.1016/j.biortech.2017.05.147
Choi, YY., Hong, ME., Jin, ES., Woo, HM., Sim, SJ 2018 Improvement in modular scalability of polymeric thin-film photobioreactor for autotrophic culturing of Haematococcus pluvialis using industrial flue gas. Bioresour. Technol., 249, 519-526.
Keywords: Haematococcus pluvialis; Autotrophic; Bubble column photobioreactor; Scale-up; Hydrodynamic property
Strain(s): 144 
PubMed: 29078178
DOI: 10.1016/j.biortech.2017.10.060
Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida
Strain(s): 76376496613691961 
PubMed: 24680917
DOI: 10.1016/j.ympev.2014.03.019
Chonudomkul, D., Yongmanitchai, W., Theeragool, G., Kawachi, M., Kasai, F., Kaya, K., Watanabe, M. M. 2004 Morphology, genetic diversity, temperature tolerance and toxicity of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) strains from Thailand and Japan. FEMS Microbiol. Ecol., 48, 345-355.
Keywords: toxic cyanobacteria; Cylindrospermopsis raciborskii; STRR sequences; Thailand; Japan; low-temperature adapted group; genotypic clusters
Strain(s): 99199299310401041 
PubMed: 19712304
DOI: 10.1016/j.femsec.2004.02.014
Chu, C. Y., Liao, W. R., Huang, R., Lin, L. P. 2004 Haemagglutinating and antibiotic activities of freshwater microalgae. World J. Microbiol. Biotechnol., 20, 817–825.
Keywords: Antibiotic activity; erythrocytes; freshwater microalgae; haemagglutination
Strain(s): 22622721592163216521692175218922082211221322142229223122332240224122432247224832773284 
DOI: 10.1007/s11274-004-8712-6
Chumpolkulwong, N., Kakizono, T., Ishii, H. 1997 Enzymatic conversion of b-carotene to astaxanthin by cell-extracts of a green alga Haematococcus pluvialis. Biotechnol. Lett., 19, 443-446.
Strain(s): 144 
DOI: 10.1023/A:1018392010218
Churro, C., Semedo-Aguiar, A. P., Silva, A.D., Pereira-Leal, J. B., Leite, R. B. 2020 A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Sci Rep, 10, 8679 (article ID).
Strain(s): 252100 
PubMed: 32457360
DOI: 10.1038/s41598-020-64774-y
Ciniglia, C., Cascone, C., Giudice, R. L., Pinto, G., Pollio, A. 2005 Application of methods for assessing the geno- and cytotoxicity of Triclosan to C. ehrenbergii. J. Hazard. Mater., 122, 227-232.
Keywords: Closterium ehrenbergii; Triclosan; sexual reproduction; vegetative reproduction; comet assay
Strain(s): 228229 
Coesel, P. F. M. 1991 Ammonium dependency in Closterium aciculare T. West, a planktonic desmid from alkaline, eutrophic waters. J. Plankton Res., 13, 913-922.
Strain(s): 258 
DOI: 10.1093/plankt/13.5.913
Coleman, A. W. 1959 Sexual isolation in Pandorina morum. J. Protozool., 6, 249-264.
Strain(s): 886887 
DOI: 10.1111/j.1550-7408.1959.tb04366.x
Coleman, A. W. 1988 The autofluorescent flagellum: a new phylogenetic enigma. J. Phycol., 24, 118-120.
Keywords: autofluorescence; Chrysophyceae; flagellum; fluorescence; heterokont; Ochromonas; photoreceptor; Prymnesium
Strain(s): 21422144 
DOI: 10.1111/j.1529-8817.1988.tb04465.x
Coleman, A.W. 2001 Biogeography and speciation in the Pandorina/Volvulina (Chlorophyta) superclade. J. Phycol., 37, 836-851.
Keywords: biogeography; ITS; Pandorina; Volvulina; Volvocaceae; phylogenetics; speciation; Yamagishiella
Strain(s): 583 
DOI: 10.1046/j.1529-8817.2001.01043.x
Connell, L. 2002 Rapid identification of marine algae (Raphidophyceae) using three-primer peR amplification of nuclear internal transcribed spacer (ITS) regions from fresh and archived material. Phycologia, 41, 15-21.
Strain(s): 115 
DOI: 10.2216/i0031-8884-41-1-15.1
Connell, L., Cattolico, R. A. 1996 Fragile algae: axenic culture of field-collected samples of Heterosigma carterae. Mar. Biol., 125, 421-426.
Strain(s): 293 
DOI: 10.1007/BF00346322
Conradi, F. D., Mullineaux, C. W., Wilde, A. 2020 The role of the cyanobacterial Type IV pilus machinery in finding and maintaining a favourable environment. Life-Basel, 10, 252 (article ID).
Strain(s): 2133 
PubMed: 33114175
DOI: 10.3390/life10110252
Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl. Environ. Microbiol., 69, 5716-5721.
Strain(s): 13411342134313441345134613471348 
PubMed: 12957969
DOI: 10.1128/AEM.69.9.5716-5721.2003
Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting. J. Microbiol. Methods, 55, 361-370.
Keywords: cell culture; eukaryotic autotrophic picoplankton; flow cytometry; phycocyanin; phycoerythrin; Synechococcus
Strain(s): 13411342134313441345134613471348 
Cunningham, B. R., Greenwold, M. J., Lachenmyer, E. M., Heidenreich, K, M., Davis, A. C., Dudycha, J. L., Richardson, T. L. 2019 Light capture and pigment diversity in marine and freshwater cryptophytes. J. Phycol., 55, 552-564.
Strain(s): 697698701702708 
PubMed: 30468692
DOI: 10.1111/jpy.12816
Cunningham, Jr., F. X., Lee, H., Gantt, E. 2007 Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. Eukaryot. Cell, 6, 533-545.
Strain(s): 13323377 
PubMed: 17085635
DOI: 10.1128/EC.00265-06
Curren, E., Teruaki, Y., Kuwahara, V. S., Leong, S. C. Y. 2019 Rapid profiling of tropical marine cyanobacterial communities. Reg. Stud. Mar. Sci., 25, 100485 (article ID).
Keywords: Cyanobacteria; MinION-Oxford Nanopore sequencer; Biodiversity; 16S rRNA amplicon sequencing; Long-read sequencing; Coastal waters; Southeast Asia; Monitoring
Strain(s): 22254284321352481 
DOI: 10.1016/j.rsma.2018.100485
Danbara, A., Shiraiwa, Y. 1999 The requirement of selenium for the growth of marine coccolithophorids, Emiliania huxleyi, Gephyrocapsa oceanica and Helladosphaera sp. (Prymnesiophyceae). Plant Cell Physiol, 40, 762-766.
Keywords: artificial seawater; coccolithophorids; Emiliania huxleyi; Gephyrocapsa oceanica; Helladosphaera; selenium-depletion; selenium-requirement
Strain(s): 837838 
DOI: 10.1093/oxfordjournals.pcp.a029603
Darienko, T., Gustavs, L., Eggert, A., Wolf, W., Pröschold, T. 2015 Evaluating the species boundaries of green microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) using integrative taxonomy and DNA barcoding with further implications for the species identification in environmental samples. PLoS One, 10, e0127838 (article ID).
Strain(s): 22522353 
PubMed: 26080086
DOI: 10.1371/journal.pone.0127838
Davison, J. R., Bewley, C. A. 2019 Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii. J. Nat. Prod., 82, 148-153.
Strain(s): 1699 
PubMed: 30623657
DOI: 10.1021/acs.jnatprod.8b00858
De Halperin, D. R., Mendoza, M. L., De Caire, G. Z. 1973 Axenic cultures of blue-green algae (Cyanophyta). Physis secc. B. Buenos Aires., 32, 67-84 (in Spanish with English summary).
Strain(s): 37 
de Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R. 2018 Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nat. Commun., 9, 1341 (article ID).
Keywords: DNA methylation; Epigenomics; Molecular evolution; Transposition
Strain(s): 2285 
PubMed: 29632298
DOI: 10.1038/s41467-018-03724-9
Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445.
Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists
Strain(s): 7637642565 
PubMed: 25740460
DOI: 10.1111/1755-0998.12401
Deka, D., Marwein, R., Chikkaputtaiah, C., Kaki, S. S., Azmeera, T., Boruah, H. P. D., Velmurugan, N. 2020 Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry. Process Biochem., 96, 90-101.
Keywords: Long-chain fatty acids; Micractinium sp.; Strain improvement; Fluorescent activated cell sorter; Adaptive evolution
Strain(s): 2590 
DOI: 10.1016/j.procbio.2020.06.004
del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I. 2014 The others: our biased perspective of eukaryotic genomes. Trends Ecol. Evol., 29, 252-259.
Strain(s): 1000258225842587259026702673269126932694269526962697269927002707275127532755275627582761336933703371 
PubMed: 24726347
DOI: 10.1016/j.tree.2014.03.006
Delaux, P-M., Radhakrishnan, G.V., Jayaraman, D., Cheema, J., Malbreil, M., Volkening, J.D., Sekimoto, H., Nishiyama, T., Melkonian, M., Pokorny, L., Rothfels, C.J., Sederoff, H.W., Stevenson, D.W., Surek, B., Zhang, Y., Sussman, M.R., Dunand, C., Morris, R.J., Roux, C., Wong, G.K-S., Oldroyd, G.E.D., Ané, J-M. 2015 Algal ancestor of land plants was preadapted for symbiosis. Proc. Natl. Acad. Sci. U. S. A., 112, 13390-13395
Keywords: symbiosis; plant evolution; algae; plant–microbe interactions; phylogeny
Strain(s): 67 
PubMed: 26438870
DOI: 10.1073/pnas.1515426112
Delmont, T. O., Eren, A. M. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ, 6, e4320 (article ID).
Strain(s): 2880 
PubMed: 29423345
DOI: 10.7717/peerj.4320
Delrue, F., Cerqueira, M. R. D., Compadre, A., Alvarez, P., Fleury, G., Escoffier, C., Sassi, J. F. 2021 Hydroponic farm wastewater treatment using an indigenous consortium. Processes, 9, 519 (article ID).
Strain(s): 2272152 
DOI: 10.3390/pr9030519
Demura, M., Kawachi, M., Kunugi, M., Nishizawa, T., Kasai, F., Watanabe, M. M. 2007 Development of microsatellite markers for the red tide-forming harmful species Chattonella antiqua, C. marina, and C. ovata (Raphidophyceae). Mol. Ecol. Notes, 7, 315-317.
Keywords: Chattonella; harmful algal bloom; microsatellite; phytoplankton; Raphidophyceae; red tide
Strain(s): 2 
DOI: 10.1111/j.1471-8286.2006.01592.x
Demura, M., Nakayama, T., Kasai, F., Kawachi, M. 2014 Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers. Phycol. Res., 62, 102-108.
Keywords: Chattonella marina var. antiqua; Chattonella marina var. marina; genetic structure; isolation by distance; microsatellite marker; population genetics
Strain(s): 1231483848586113114115116118121161557197419751976197719781980198119821983198423832384238523862387238823892390239123922393239423952396239723982399240024012402240324042405240624072509251025112512251325142515251625172518 
DOI: 10.1111/pre.12047
Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy
Strain(s): 123569101483848511311411611814616129355756160367171684919741975197619771978198019811982198319841986238323842385238623872388238923912392239323942395239623972398239924002401240224032404240524062407 
DOI: 10.2216/08-98.1
Denboh, T., Hendrayanti, D., Ichimura, T. 2001 Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data. J. Phycol., 37, 1063-1072.
Keywords: Charophyceae; Closterium; desmid; molecular phylogeny; placoderm; SSU rDNA; Zygnematales
Strain(s): 52125165170174175180181185187188191194198199200271339449 
DOI: 10.1046/j.1529-8817.2001.00146.x
Denboh, T., Ichimura, T., Hendrayanti, D., Coleman, A. W. 2003 Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 Group I intron and ITS2 of nuclear rDNA. J. Phycol., 39, 960-977.
Keywords: biological species; Closterium; group I introns; ITS2; mating group; molecular phylogeny; speciation
Strain(s): 172173174182183228229 
DOI: 10.1046/j.1529-8817.2003.02145.x
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A. 2019 Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon. Algal Res., 40, 101492.
Keywords: Chrysochromulina; Freshwater; Scale-less; Electron microscopy; Morphology; Cryptic species complexes
Strain(s): 562 
DOI: 10.1016/j.algal.2019.101492
Devi, A., Chiu, Y.-T., Hsueh, H.-T., Lin, T.-F. 2021 Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges. Water Res., 188, 116478 (article ID).
Keywords: biomolecular; drinking water; database; geo; mic; monitoring; Taq-Man probes
Strain(s): 5124062406342374238 
DOI: 10.1016/j.watres.2020.116478
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Comparative ecophysiology of the xanthophyll cycle in six marine phytoplanktonic species. Protist, 160, 397-411.
Keywords: diatoxanthin; photoprotection; phytoplankton; picoplankton; pigments; xanthophyll cycle
Strain(s): 2687 
PubMed: 19375387
DOI: 10.1016/j.protis.2009.03.001
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnol. Oceanogr., 54, 823-836.
Strain(s): 2690 
DOI: 10.4319/lo.2009.54.3.0823
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Blue light induction of carbonic anhydrase activity in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 215-219.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photoreceptor
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077732
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Light requirement for carbonic anhydrase induction in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 207-213.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; light intensity
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077731
Dionisio-Sese, M. L., Fukuzawa, H., Miyachi, S. 1990 Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol., 94, 1103-1110.
Strain(s): 2235 
PubMed: 16667803
DOI: 10.1104/pp.94.3.1103
Dionisio-Sese, M. L., Miyachi, S. 1992 The effect of sodium chloride on carbonic anhydrase activity in marine microalgae. J. Phycol., 28, 619-624.
Keywords: carbonic anhydrase; Cl- activation; Cl- inhibition; marine microalgae; NaCl effect; photosynthesis
Strain(s): 2168 
DOI: 10.1111/j.0022-3646.1992.00619.x
Dittami, S. M., Riisberg, I., Edvardsen, B. 2013 Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta). Environ. Sci. Pollut. Res., 20, 6824-6837.
Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR
Strain(s): 670 
PubMed: 23361173
DOI: 10.1007/s11356-012-1402-2
do Amaral, S. C., Monteiro, P. R., Neto, J. d. S. P., Serra, G. M., Gonçalves, E. C., Xavier, L. P., Santos, A. V. 2021 Current knowledge on microviridin from cyanobacteria. Mar. Drugs, 19, 17 (article ID).
Keywords: biotechnology; cyanobacteria; ecology; microviridin; oligopeptide
Strain(s): 2988341211 
PubMed: 33406599
DOI: 10.3390/md19010017
Domínguez-Bocanegra, A. R., Legarreta, I. G., Jeronimo, F. M. 2004 Influence of environmental and nutritional factors in the production of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 92, 209-214.
Keywords: Haematococcus; Astaxanthin production; Light intensity; Aeration
Strain(s): 144 
PubMed: 14693455
DOI: 10.1016/j.biortech.2003.04.001
Domínguez-Bocanegra, A. R., Ponce-Noyola, T., Torres-Muñoz, J. A. 2007 Astaxanthin production by Phaffia rhodozyma and Haematococcus pluvialis: a comparative study. Appl. Microbiol. Biotechnol., 75, 783-791.
Keywords: Haematococcus pluvialis; Phaffia rhodozyma; Astaxanthin synthesis; Coconut milk
Strain(s): 144 
PubMed: 17333170
DOI: 10.1007/s00253-007-0889-9
Domínguez-Martín, M. A., Gómez-Baena, G., Díez J., López-Grueso, M. J., Beynon, R. J., García-Fernández, J. M. 2017 Quantitative proteomics shows extensive remodeling induced by nitrogen limitation in Prochlorococcus marinus SS120. mSystems., 2, e00008-17 (article ID).
Keywords: marine cyanobacteria; nitrogen limitation; nitrogen metabolism; prochlorococcus; quantitative proteomics
Strain(s): 2880 
PubMed: 28593196
DOI: 10.1128/mSystems.00008-17
Donia, M. S., Schmidt, E. W. 2011 Linking chemistry and genetics in the growing cyanobactin natural products family. Chem. Biol., 18, 508-519.
Strain(s): 596 
PubMed: 21513887
DOI: 10.1016/j.chembiol.2011.01.019
Dorantes-Aranda, J. J., Nichols, P. D., Waite, T. D., Hallegraeff, G. M. 2013 Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells. J. Phycol., 2, 427-438.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 118 
PubMed: 27008528
DOI: 10.1111/jpy.12053
Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R. 2019 Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923.
Keywords: heterotrophy; ochrophyte; phylogenomics; dual targeting; protist
Strain(s): 1846 
PubMed: 30872488
DOI: 10.1073/pnas.1819976116
Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID).
Strain(s): 4391 
PubMed: 24453981
DOI: 10.1371/journal.pgen.1004008
Dreher, T. W., Davis, E. W., Mueller, R. S., Otten, T. G. 2021 Comparative genomics of the ADA clade within the Nostocales. Harmful Algae, 104, 102037 (article ID).
Keywords: Dolichospermum; Aphanizomenon; Anabaena; Mobilome; Genome synteny; Cyanotoxin genes
Strain(s): 806 
PubMed: 34023075
DOI: 10.1016/j.hal.2021.102037
Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W. 2018 A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales. Harmful Algae, 77, 93-107.
Keywords: Genomics; Metagenomics; Filamentous cyanobacteria
Strain(s): 81 
PubMed: 30005805
DOI: 10.1016/j.hal.2018.05.009
Du, HW., Yang, LY., Wu, J., Xiao, L., Wang, XL., Jiang, LJ. 2012 Simultaneous removal of phosphorus and nitrogen in a sequencing batch biofilm reactor with transgenic bacteria expressing polyphosphate kinase. Appl. Microbiol. Biotechnol., 96, 265-272.
Keywords: Poly-phosphate kinase gene; Pseudomonas putida; Sequencing batch biofilm reactor; Phosphorus removal; Nitrogen removal
Strain(s): 843 
PubMed: 22218771
DOI: 10.1007/s00253-011-3839-5
Dufresne, A., Garczarek, L., Partensky, F. 2005 Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol., 6, R14 (article ID).
Strain(s): 28802887 
PubMed: 15693943
DOI: 10.1186/gb-2005-6-2-r14
Dwi, S., Hirata, K., Asada, Y., Miyamoto, K. 2001 Utilization of cyanobacterial biomass from water bloom for bioproduction of lactic acid. World J. Microbiol. Biotech., 17, 259-264.
Keywords: cyanobacterium; CO2 supplementation; lactic acid; Lactobacillus agilis; L. amylovorus; L. ruminis; starch; water bloom
Strain(s): 2344 
DOI: 10.1023/A:1016638619
Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z. 2019 The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš. Toxins, 11, 725 (article ID).
Keywords: microcystin; biodegradation; hydrogen peroxide; treatment; cyanobacteria; bloom
Strain(s): 107 
PubMed: 31835838
DOI: 10.3390/toxins11120725
Edvardsen, B., Eikrem, W., Shalchian-Tabrizi, K., Riisberg, I., Johnsen, G., Naustvoll, L., Throndsen, J. 2007 Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. J. Phycol., 43, 1054-1070.
Keywords: carotenoids; Chattonella; Dictyochophyceae; harmful algae; LSU rDNA; new taxon; phylogeny; SSU rDNA; ultrastructure
Strain(s): 670 
DOI: 10.1111/j.1529-8817.2007.00390.x
Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228.
Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy
Strain(s): 13331393 
DOI: 10.1080/09670262.2011.594095
Edwin, N., Akhwale, J. K., Mwirichia, R. 2019 Phylogenetic and morphological diversity of culturable cyanobacteria from Lake Magadi in Kenya. Afr. J. Bio. Sc., 1, 24-31.
Keywords: Cyanobacteria; Soda lakes; Extremophiles; Lake Magadi
Strain(s): 208 
DOI: 10.33472/AFJBS.1.4.2019.24-31
Ehara, M., Kitayama, T., Watanabe, K. I., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1999 Comprehensive molecular phylogenetic analysis of a heterokont alga (NIES 548) using genes from all three cellular compartments. Phycol. Res., 47, 225-231.
Keywords: cytochrome oxydase subunit I; Phaeophyceae; Tribonema; Xanthophyceae
Strain(s): 548 
DOI: 10.1046/j.1440-1835.1999.00166.x
Ehara, M., Watanabe, K. I., Kawai, H., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1998 Distribution of the mitochondrial deviant genetic code AUA for methionine in heterokont algae. J. Phycol., 34, 1005-1008.
Keywords: cytochrome oxydase subunit I; deviant genetic code; heterokont algae; Phaeophyceae; Xanthophyceae
Strain(s): 1 
DOI: 10.1046/j.1529-8817.1998.341005.x
Ehara, T., Ogasawara, Y., Osafune, T. 1990 Behavior of chloroplast nucleoids during the cell cycle of Chlamydomonas reinhardtii (Chlorophyta) in synchronized culture. J. Phycol., 26, 317-323.
Keywords: cell cycle; Chlamydomons; chloroplast division; DAPI; nucleoid
Strain(s): 2235 
DOI: 10.1111/j.0022-3646.1990.00317.x
Ehara, T., Osafune, T., Hase, E. 1985 Interactions between the nucleus and cytoplasmic organelles durihg the cell cycle of Euglena gracilis in synchronized cultures. III. Associations between the nucleus and chloroplasts at an early stage of the cell cycle under photoorganotrophic conditions (part II). Plant Cell Physiol., 26, 1155-1165.
Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; Euglena gracilis; three-dimensional chloroplast model
Strain(s): 48 
Ehara, T., Osafune, T., Hase, E. 1990 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in synchronized cultures. Exp. Cell Res., 190, 104-112.
Strain(s): 48 
DOI: 10.1016/0014-4827(90)90150-9
Ehara, T., Shihira-Ishikawa, I., Osafune, T., Hase, E., Ohkuro, I. 1975 Some structural characteristics of chloroplast degeneration in cells of Euglena gracilis Z during their heterotrophic growth in darkness. J. Electron Microscopy, 24, 253-261.
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a049978
Ehara, T., Sumida, S., Osafune, T. 1988 Dynamic morphological changes of organelles in Euglena gracilis Z. J. Tokyo Med. Coll., 46, 420-431.
Strain(s): 48 
Ehara, T., Sumida, S., Osafune, T., Hase, E. 1984 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in cynchronized cultures. I. Associations between the nucleus and chloroplasts at an early stage in the cell cycle under photoorganotrophic conditions (Part I). Plant Cell Physiol., 25, 1133-1146.
Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; chromosome; Euglena gracilis
Strain(s): 48 
Eikrem, W., Romari, K., Latasa, M., Le Gall, F., Throndsen, J., Vaulot, D. 2004 Florenciella parvula gen. et sp. nov. (Dictyochophyceae, Heterokontophyta), a small flagellate isolated from the English Channel. Phycologia, 43, 658-668.
Strain(s): 2684 
DOI: 10.2216/i0031-8884-43-6-658.1
Eio, E. J., Kawai, M., Niwa, C., Ito, M., Yamamoto, S., Toda, T. 2015 Biodegradation of bisphenol A by an algal-bacterial system. Environ. Sci. Pollut. Res., 22, 15145–15153.
Keywords: Algal-bacterial system; Bacterial consortium; Biodegradation; Bisphenol A; Inhibition; Photosynthetic oxygen
Strain(s): 2168 
PubMed: 26013738
DOI: 10.1007/s11356-015-4693-2
Eisentraeger, A., Dott, W., Klein, J., Hahn, S. 2003 Comparative studies on algal toxicity testing using fluorometric microplate and Erlenmeyer flask growth-inhibition assays. Ecotox. Environ. Safe., 54, 346-354.
Keywords: Algal growth-inhibition assay; Algal quantification; In vivo chlorophyll fluorescence; Testing volumina; Microplate; Evaluation parameters; Toxicological endpoints; EC value; Reference toxicants
Strain(s): 4282 
PubMed: 12651191
DOI: 10.1016/S0147-6513(02)00099-4
El Alaoui, S., Diez, J., Toribio, F., Gómez-Baena, G., Dufresne, A., García-Fernández, J. M. 2003 Glutamine synthetase from the marine cyanobacteria Prochlorococcus spp.; characterization, phylogeny and response to nutrient limitation. Environ. Microbiol., 5, 412-423.
Strain(s): 28802887 
PubMed: 12713467
DOI: 10.1046/j.1462-2920.2003.00433.x
Eliáš, M. Neustupa, J. 2009 Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae). a new genus for "budding" subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa. Fottea, 9, 169-177.
Keywords: evolution; Marvania; Stichococcus; phylogeny; Trebouxiophyceae; 18S rRNA
Strain(s): 996 
DOI: 10.5507/fot.2009.017
Endo, B., Fujii, T., Kamiya, Y., Sekimoto, H. 1997 Analysis of genomic sequences encoding a sex pheromone from the Closterium peracerosum-strigosum-littorale complex. J. Plant Res., 110, 463-467.
Keywords: cis-element; Closterium; genomic DNA; protoplast-release- inducing protein (PR-IP); sex pheromone; transcription
Strain(s): 6768 
DOI: 10.1007/BF02506807
Engesmo, A., Strand, D., Gran-Stadniczeñko, S., Edvardsen, B., Medlin, LK., Eikrem, W. 2018 Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae, 75, 105-117.
Keywords: Karenia mikimotoi; Karlodinium veneficum; Heterosigma akashiwo; Molecular monitoring; rDNA; 454 high throughput environmental; sequencing; SEM
Strain(s): 15 
PubMed: 29778220
DOI: 10.1016/j.hal.2018.04.007
Erata, M., Chihara, M. 1987 Cryptomonads from the Sugadaira-Moor, Central Japan. Bull. Sugadaira Mont. Res. Center, Univ. Tsukuba, 8, 57-69 (in Japanese with English summary).
Strain(s): 706713714715 
Erata, M., Chihara, M. 1989 Re-examination of Pyrenomonas and Rhodomonas (Class Cryptophyceae) through ultrastructural survey of red pigmented cryptomonads. Bot. Mag. Tokyo, 102, 429-443.
Keywords: nucleomorph; periplastidal compartment; Pyrenomonas; Rhodomonas
Strain(s): 697698699700701702705706 
DOI: 10.1007/BF02488125
Erata, M., Chihara, M. 1991 Cryptomonads of Japan (2) three species of Chroomonas. J. Jpn. Bot., 66, 7-11.
Strain(s): 706707708709710712713714727 
Erata, M., Kubota, M., Takahashi, T., Inouye, I., Watanabe, M. 1995 Ultrastructure and phototactic action spectra of two genera of cryptophyte flagellate algae, Cryptomonas and Chroomonas. Protoplasma, 188, 258-266.
Keywords: action spectrum; Chroomonas; Cryptomonas; cryptophyte; eyespot; phototaxis; phycobilin
Strain(s): 707714 
DOI: 10.1007/BF01280378
Erhard, M., von Döhren, H., Jungblut, P. 1997 Rapid typing and elucidation of new secondary metabolites of intact cyanobacteria using MALDI-TOF mass spectrometry. Nat. Biotechnol., 15, 906-909.
Keywords: cyanobacteria; secondary metabolites; MALD-TOF; PSD; microcystin; anabaenopeptolins
Strain(s): 90 
PubMed: 9306409
DOI: 10.1038/nbt0997-906
Erratt, K. J., Creed, I. F., Trick, C. G. 2020 Differential drawdown of ammonium, nitrate, and urea by freshwater chlorophytes and Cyanobacteria. J. Phycol., 56, 458-468.
Strain(s): 8890102843 
PubMed: 31875965
DOI: 10.1111/jpy.12960
Fang, L., Leliaert, F., Novis, P. M., Zhang, Z., Zhu, H., Liu, G., Penny, D., Zhong, B. 2018 Improving phylogenetic inference of core Chlorophyta using chloroplastsequences with strong phylogenetic signals and heterogeneous models. Mol. Phylogenet. Evol., 127, 248-255.
Keywords: Green algae; Phylogenomics; GC-heterogeneous sites; Heterogeneous models; Phylogenetic signals
Strain(s): 15453718371838 
PubMed: 29885933
DOI: 10.1016/j.ympev.2018.06.006
Faria, D. G., Kato, A., de la Peña, M., Suda, S. 2011 Taxonomy and phylogeny of Nephroselmis clavistella sp. nov. (Nephroselmidophyceae, Chlorophyta). J. Phycol., 6, 1388-1396.
Keywords: molecular phylogeny; morphology; Nephroselmidophyceae; Nephroselmis clavistella sp. nov.; scale morphology; taxonomy; ultrastructure
Strain(s): 2867 
PubMed: 27020363
DOI: 10.1111/j.1529-8817.2011.01059.x
Fawley, M. W. 1991 Disjunct distribution of the xanthophyll loroxanthin in the green algae (Chlorophyta). J. Phycol., 27, 544-548.
Keywords: carotenoids; Chlorophyta; high-performance liquid chromatography; loroxanthin; xanthophylls
Strain(s): 2285 
DOI: 10.1111/j.0022-3646.1991.00544.x
Featherston, J., Arakaki, Y., Hanschen, E. R., Ferris, PJ., Michod, R. E., Olson, B. J. S. C., Nozaki, H., Durand P. M. 2018 The 4-celled Tetrabaena socialis nuclear genome reveals the essential components for genetic control of cell number at the origin of multicellularity in the volvocine lineage. Mol. Biol. Evol., 35, 855-870.
Keywords: Volvocines; multicellularity; Tetrabaena socialis; evolutionary genomics
Strain(s): 571 
PubMed: 29294063
DOI: 10.1093/molbev/msx332
Featherston, J., Arakaki, Y., Nozaki, H., Durand, P. M., Smith, D. R. 2016 Inflated organelle genomes and a circularmapping mtDNA probably existed at the origin of coloniality in volvocine green algae. Eur. J. Phycol., 51, 369-377.
Keywords: Genome expansion; green microalga; mitochondrial DNA; plastid DNA; Tetrabaena socialis; Volvocine algae
Strain(s): 571 
DOI: 10.1080/09670262.2016.1198830
Feinstein, T. N., Traslavina, R., Sun, M.-Y., Lin, S. 2002 Effects of light on photosynthesis, grazing, and population dynamics of the heterotrophic dinoflagellate Pfiesteria piscicida (Dinophyceae). J. Phycol., 38, 659-669.
Keywords: cannibalism; grazing; growth; kleptoplastidy; light; Pfiesteria piscicida
Strain(s): 1730 
DOI: 10.1046/j.1529-8817.2002.01175.x
Feng, S., Liu, F., Zhu, S., Feng, P., Wang, Z., Yuan, Z., Shang, C., Chen, H. 2020 Performance of a microalgal-bacterial consortium system for the treatmentof dairy-derived liquid digestate and biomass production. Bioresour. Technol., 306, 123101 (article ID).
Keywords: Liquid digestate; C. vulgaris; Pollutant removal; Biomass production; Bacterial community analysis
Strain(s): 227 
PubMed: 32197188
DOI: 10.1016/j.biortech.2020.123101
Ferris, P., Olson, B. J., De Hoff, P. L., Douglass, S., Casero, D., Prochnik, S., Geng, S., Rai, R., Grimwood, J., Schmutz, J., Nishii, I., Hamaji, T., Nozaki, H., Pellegrini, M., Umen,J. G. 2010 Evolution of an expanded sex-determining locus in Volvox. Science, 328, 351-354.
Strain(s): 732733 
PubMed: 20395508
DOI: 10.1126/science.1186222
Fitriana, H.-N., Lee, S.-Y., Choi, S.-A., Lee, J.-Y., Kim, B.-L., Lee, J.-S., Oh, Y.-K. 2021 Electric stimulation of astaxanthin biosynthesis in Haematococcus pluvialis. Appl. Sci., 11, 3384 (article ID).
Keywords: microalgae; Haematococcus pluvialis; astaxanthin; electric treatment; stimulation; stress
Strain(s): 144 
DOI: 10.3390/app11083348
Fjiwara, T., Ohnuma, M. 2018 Procedures for transformation and their applications in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 87-103.
Keywords: Transformation; Homologous recombination; Gene targeting; biotechnology; Algae; Genetic engineering
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_7
Forni, C., Telo, F. R., Caiola, M. G. 1997 Comparative analysis of the polysaccharides produced by different species of Microcystis (Chroococcales, Cyanophyta) . Phycologia, 36, 181-185.
Strain(s): 8798102112 
DOI: 10.2216/i0031-8884-36-3-181.1
Foy, R. H., Gibson, C. E. 1982 Photosynthetic characteristics of planktonic blue-green algae: the response of twenty strains grown under high and low light. Br. Phycol. J., 17, 169-182.
Strain(s): 596 
DOI: 10.1080/00071618200650171
Franklin, D. J., Steinke, M., Young, J., Probert, I., Malin, G. 2010 Dimethylsulphoniopropionate (DMSP), DMSP-lyase activity (DLA) and dimethylsulphide (DMS) in 10 species of coccolothophore. Mar. Ecol. Prog. Ser., 410, 13-23.
Keywords: Marine sulphur cycle; Calcifying haptophytes; Biogeochemistry; Emiliania; Gephyrocapsa; Calcidiscus; Coccolithophores
Strain(s): 2694269626972707 
DOI: 10.3354/meps08596
Fritzsche, S., Blenk, P., Christian, J., Castiglione, K., Becke,r A. M. 2021 Inhibitory properties of microalgal extracts on the in vitro replication of cyprinid herpesvirus 3. bioRXiv
Keywords: antiviral; aquaculture; cyanobacteria; cyprinid herpesvirus 3; fish disease; koi herpes virus; microalgae
Strain(s): 39 
DOI: 10.1101/2021.03.05.434077
Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H. 2017 Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton. ACS Omega, 2, 3175–3182.
Keywords: Geological materials; Microbiology; Separation science; Toxicology; Water pollution
Strain(s): 324 
PubMed: 30023687
DOI: 10.1021/acsomega.7b00081
Fujii, K. 2012 Process integration of supercritical carbon dioxide extraction and acid treatment for astaxanthin extraction from a vegetative microalga. Food Bioprod. Process., 90, 762-766.
Keywords: Supercritical carbon dioxide; Microalgae; Monoraphidium sp.; Astaxanthin; Chlorophyll
Strain(s): 2267 
DOI: 10.1016/j.fbp.2012.01.006
Fujii, K., Imazato, E., Nakashima, H., Ooi, O., Saeki, A. 2006 Isolation of the non-fastidious microalga with astaxanthin-accumulating property and its potential for application to aquaculture. Aquaculture, 261, 285-293.
Keywords: Astaxanthin; Aquaculture; Microalgae; Monoraphidium
Strain(s): 2267 
DOI: 10.1016/j.aquaculture.2006.07.014
Fujii, K., Matsunobu, S., Takahashi, Y. 2014 Characterization of the new microalgal strains, Oogamochlamys spp., and their potential for biofuel production. Algal Res., 5, 164-170.
Keywords: Lipid; Biofuel; Microalgae; Oogamochlamys
Strain(s): 36433644 
DOI: 10.1016/j.algal.2014.08.003
Fujii, K., Nakajima, H, Anno, Y. 2008 Potential of Monoraphidium sp. GK12 for energy-saving astazanthin production. J. Chem. Tech. Biotechnol., 83, 1578-1584.
Keywords: astaxanthin; microalgae; Monoraphidium sp.; outdoor cultivation; energy-saving technology
Strain(s): 2267 
DOI: 10.1002/jctb.1978
Fujii, K., Nakashima, H., Hashidzume, Y. 2010 Isolation of folate-producing microalgae, from oligotrophic ponds in Yamaguchi, Japan. J. Appl. Microbiol., 108, 1421-1429.
Keywords: B-vitamins; Chlamydomonas; Chlorococcum; folate; microalgae; thiamine
Strain(s): 217222352848284928502851 
PubMed: 19796121
DOI: 10.1111/j.1365-2672.2009.04542.x
Fujii, K., Nakashima, H., Hashidzume, Y., Uchiyama, T., Mishiro, K., Kadota, Y. 2010 Potential use of the astaxanthin-producing microalga, Monoraphidium sp. GK12, as a functional aquafeed for prawns. J. Appl. Phycol., 22, 363-369.
Keywords: Astaxanthin; Vitamin; Unsaturated fatty acid; Microalgae; Monoraphidium; Functional aquafeed
Strain(s): 2267 
DOI: 10.1007/s10811-009-9468-z
Fujii, K., Yahashi, Y., Nakano, T., Imanishi, S., Baldia, S. F., Harada, K. 2002 Simultaneous detection and determination of the absolute configuration of thiazole-containing amino acids in a peptide. Tetrahedron, 58, 6873-6879.
Keywords: microcyclamide; absolute configuration; advanced Marfey's method; thiazole-containing (TZL-) amino acid
Strain(s): 101298 
DOI: 10.1016/S0040-4020(02)00748-2
Fujii, M., Sato, Y., Ito, H., Masago, Y., Omura, T. 2012 Monosaccharide composition of the outer membrane lipopolysaccharide and O-chain from the freshwater cyanobacterium Microcystis aeruginosa NIES-87. J. Appl. Microbiol., 113, 896-903.
Keywords: chemical characterization, lipopolysaccharide, Microcystis aeruginosa, O-chain
Strain(s): 87 
DOI: 10.1111/j.1365-2672.2012.05405.x
Fujisawa, T., Narikawa, R., Okamoto, S., Ehira, S., Yoshimura, H., Suzuki, I., Masuda, T., Mochimaru, M., Takaichi, S., Awai, K., Sekine, M., Horikawa, H., Yashiro, I., Omata, S., Takarada, H., Katano, Y., Kosugi, H., Tanikawa, S., Ohmori, K., Sato, N.,Ikeuchi, M., Fujita, N., Ohmori, M. 2010 Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39. DNA Res., 17, 85-103.
Keywords: cyanobacteria; Arthrospira; health supplement; genome; cAMP
Strain(s): 39 
PubMed: 20203057
DOI: 10.1093/dnares/dsq004
Fujise, D., Tsuji, K., Fukushima, N., Kawai, K., Harada, K. 2010 Analytical aspects of cyanobacterial volatile organic compounds for investigation of their production behavior. J. Chromatogr. A, 1217, 6122-6125.
Keywords: Cyanobacteria; Volatile organic compounds; Analysis; b-Cyclocitral; 2-Methyl-1-butanol; 3-Methyl-1-butanol; SPME
Strain(s): 87298 
DOI: 10.1016/j.chroma.2010.07.008
Fujita, K. 1958 The metabolism of acetate in Chlorella cells. J. Biochem., 46, 253-268.
Strain(s): 2170 
Fujita, Y. 1974 The light-induced oxidation-reduction reaction of cytochrome b-559 in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 15, 861-874.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075075
Fujita, Y. 1975 Further investigation of the light-induced cytochrome b-559 reaction in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 16, 1037-1048.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075223
Fujita, Y. 1976 The C550 photoresponse at room temperature observed in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 17, 187-191.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075258
Fujita, Y., Hattori, A. 1960 Formation of phycoerythrin in pre-illuminated cells of Tolypothrix tenuis with special reference to nitrogen metabolism. Plant Cell Physiol., 1, 281-292.
Strain(s): 37 
Fujita, Y., Hattori, A. 1960 Effect of chromatic lights on phycobilin formation in a blue-green alga, Tolypothrix tenuis. Plant Cell Physiol., 1, 293-303.
Strain(s): 37 
Fujita, Y., Hattori, A. 1962 Changes in composition of cellular material during formation of phycobilin chromoproteids in a blue-green alga, Tolypothrix tenuis. J. Biochem., 52, 38-42.
Strain(s): 37 
PubMed: 13895763
Fujita, Y., Hattori, A. 1962 Photochemical interconversion between precursors of phycobilin chromoproteids in Tolypothrix tenuis. Plant Cell Physiol., 3, 209-220.
Strain(s): 37 
Fujita, Y., Hattori, A. 1962 Preliminary note on a new phycobilin pigment isolated from blue-green algae. J. Biochem., 51, 89-91.
Strain(s): 1937 
PubMed: 13895764
Fujita, Y., Hattori, A. 1963 Action spectrum of light-induced nitrite reduction in Anabaena cylindrica. J. Gen. Appl. Microbiol., 9, 257-265.
Strain(s): 19 
Fujita, Y., Hattori, A. 1963 Effects of second chromatic illumination on phycobilin chromo-protein formation in chromatically preillumi-nated cells of Tolypothrix tenuis. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 431-440.
Strain(s): 37 
Fujita, Y., Hattori, A. 1963 Occurrence of a purple bile pigment in phycoerythrin-rich cells of the blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 9, 253-256.
Strain(s): 37 
Fujita, Y., Murano, F. 1967 Photochemical activities of sonicated lamellae of spinach chloroplasts with special reference to the action of CRS (cytochrome c reducing substance). Plant Cell Physiol., 8, 269-281.
Strain(s): 19 
Fujita, Y., Murano, F. 1968 Occurrence of back flow of electrons against the action of photochemical system I in sonicated lamellar fragments. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 161-169.
Strain(s): 19 
Fujita, Y., Myers, J. 1966 Some properties of the cytochrome C reducing substance, a factor for light-induced redox reaction of cytochrome C in photosynthetic lamellae. Plant Cell Physiol., 7, 599-606.
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a079212
Fujita, Y., Ohama, H., Hattori, A. 1964 Hydrogenase activity of cell-free preparation obtained from the blue-green alga, Anabaena cylindrica. Plant Cell Physiol., 5, 305-314.
Strain(s): 19 
Fujita, Y., Pjon, C.-J., Suzuki, R. 1974 Studies on the Hill reaction of membrane fragments of blue-green algae V. A correlation between the solubilization of a photochemically active chromoprotein (ACP) and the inactivation of photosystem II activity in membrane fragments of Anabaena cylindrica. Plant Cell Physiol., 15, 779-787.
Strain(s): 19 
Fujita, Y., Suzuki, R. 1971 Studies on the Hill reaction of membrane fragments of blue-green algae I. Stabilizing effect of various media on the 2,6-dichlorophenol indophenol-Hill activity of membrane fragments obtained from Anabaena cylindrica and Anabaena variabilis. Plant Cell Physiol., 12, 641-651.
Strain(s): 1923 
Fujita, Y., Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae III. Fluorescence characteristics of membrane fragments of Anabaena variabilis and Anabaena cylindrica. Plant Cell Physiol., 14, 249-260.
Strain(s): 1923 
Fujita, Y., Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae IV. Carotenoid photobleaching induced by photosystem II action. Plant Cell Physiol., 14, 261-273.
Strain(s): 1923 
Fujita, Y., Tsuji, T. 1968 Photochemically active chromoprotein isolated from the blue-green alga Anabaena cylindrica. Nature, 219, 1270-1271.
Strain(s): 19 
PubMed: 5677430
DOI: 10.1038/2191270a0
Fujiwara, S., Fukuzawa, H., Tachiki, A., Miyachi, S. 1990 Structure and differential expression of two genes encoding carbonic anhydrase in Chlamydomonas reinhardtii. Proc. Nati. Acad. Sci. U. S. A., 87, 9779-9783.
Strain(s): 2235 
PubMed: 2124702
DOI: 10.1073/pnas.87.24.9779
Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S. 2019 Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae. Plant Direct, 3, e00134 (article ID).
Keywords: Cyanidioschyzon merolae; Galdieria sulphuraria; heterotroph; mixotroph; plasma membrane sugar transporter
Strain(s): 3377 
DOI: 10.1002/pld3.134
Fujiwara, T., Kanesaki, Y., Hirooka, S., Era, A., Sumiya, N., Yoshikawa, H., Tanaka, K., Miyagishima, S. 2015 A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 6, 657 (article ID).
Keywords: algae; plants; homologous recombination; conditional knockdown; gene inducible system
Strain(s): 3377 
PubMed: 26379685
DOI: 10.3389/fpls.2015.00657
Fujiwara, T., Kuroiwa, H., Yagisawa, F., Ohnuma, M., Yoshida, Y., Yoshida, M., Nishida, K., Misumi, O., Watanabe, S., Tanaka, K., Kuroiwa, T. 2010 The coiled-coil protein VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance of Cyanidioschyzon merolae. Plant Cell, 22, 772-781.
Strain(s): 3377 
PubMed: 20348431
DOI: 10.1105/tpc.109.070227
Fujiwara, T., Misumi, O., Tashiro, K., Yoshida, Y., Nishida, K., Yagisawa, F., Imamura, S., Yoshida, M., Mori, T., Tanaka, K., Kuroiwa, T. 2009 Peirodic gene expression patterns du9iring the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae. DNA Res., 16, 59-72.
Keywords: cell cycle; microarray; mitochondria-plastid division genes; organelle division genes; Cyanidioschyzon merolae
Strain(s): 3377 
PubMed: 19147531
DOI: 10.1093/dnares/dsn032
Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y. 2017 Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 8, e343 (article ID).
Keywords: algae, plants; photosynthetic eukaryotes; genetic modification; multiple transformation; chloramphenicol; CAT selection marker
Strain(s): 3377 
PubMed: 28352279
DOI: 10.3389/fpls.2017.00343
Fukuda, S., Iwamoto, K., Atsumi, M., Yokoyama, A., Nakayama, T., Ishida, K-I., Inouye, I., Shiraiwa, Y. 2014 Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J. Plant Res., 127, 79-89.
Keywords: Algal phytoremediation; Bioaccumulation; Radiopollution; Radionuclide elimination; Radioactive cesium; The Fukushima 1 Nuclear Power Plant accident
Strain(s): 243671155160203233246329333391405417440487503529531538548553587597678727805843859931995100310121015101710311044104512591326133113771382138814111435143914401441144214581728182618311833184018461862186519562131214421462147215021752176218522682325234123522377241124122437285428552856285828592860 
PubMed: 24346654
DOI: 10.1007/s10265-013-0596-9
Fukuda, S., Suzuki, I., Hama, T., Shiraiwa, Y. 2011 Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification. J. Oceanogr., 67, 17-25.
Keywords: Alkalization; Calcification; Coccolithophorid; Emiliania huxleyi; Inorganic carbon; Ocean acidification; pH change; pH effect; Photosynthesis; Respriration
Strain(s): 837 
DOI: 10.1007/s10872-011-0001-z
Fukuda, S., Suzuki, Y., Shiraiwa, Y. 2014 Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2 enrichment. Photosynth. Res., 121, 299-309.
Keywords: Acidification; CO2 enrichment; Calcification; Emiliania huxleyi; pH effect; Photosynthesis
Strain(s): 837 
PubMed: 24500605
DOI: 10.1007/s11120-014-9976-9
Fukumoto, R., Dohmae, N., Takio, K., Satoh, S., Fujii, T., Sekimoto, H. 2002 Purification and characterization of a pheromone that induces sexual cell division in the unicellular green alga Closterium ehrenbergii. Plant Physiol. Biochem., 40, 183-188.
Keywords: Closterium ehrenbergii; pheromone; sexual reproduction
Strain(s): 228229 
DOI: 10.1016/S0981-9428(01)01356-0
Fukumoto, R., Fujii, T., Sekimoto, H. 1997 Detection and evaluation of a novel sexual pheromone that induces sexual cell division of Closterium ehrenbergii (Chlorophyta). J. Phycol., 33, 441-445.
Keywords: Chlorophyta; Closterium ehrenbergii; conjugation; gametogenesis; gamete; pheromone; protoplast-release-inducing protein; sexual cell division
Strain(s): 228229 
DOI: 10.1111/j.0022-3646.1997.00441.x
Fukumoto, R., Fujii, T., Sekimoto, H. 1998 A newly identified chemotactic sexual pheromone from Closterium ehrenbergii. Sex. Plant Reprod., 11, 81-85.
Keywords: Closterium ehrenbergii; chemoattractant; conjugation; sexual pheromone; protoplast-release inducing protein
Strain(s): 228229 
DOI: 10.1007/s0049700501
Fukumoto, R., Fujii, T., Sekimoto, H. 2003 Cloning and characterization of a cDNA encoding a sexual cell division-inducing pheromone from a unicellular green alga Closterium ehrenbergii. J. Phycol., 39, 931-936.
Keywords: Closterium; conjugation; pheromone; sexual reproduction; RACE-PCR
Strain(s): 228229 
DOI: 10.1046/j.1529-8817.2003.03004.x
Fukumoto, T., Nishimura, T., Nagasawa, T., Kitajima, K., Iwamura, T. 1988 Exclusion chromatography with controlled-pore glass beads to isolate Chlorella chromatin and its applications. Anal. Biochem., 170, 463-471.
Strain(s): 2170 
PubMed: 3394945
DOI: 10.1016/0003-2697(88)90659-8
Fukuzawa, H., Fujiwara, S., Yamamoto, Y., Dionisio-Sese, M. L., Miyachi, S. 1990 cDNA cloning, sequence, and expression of carbonic anhydrase in Chlamydomonas reinhardtii: Regulation by environmental CO2 concentration. Proc. Nati. Acad. Sci. U. S. A., 87, 4383-4387.
Strain(s): 2235 
PubMed: 2112252
DOI: 10.1073/pnas.87.11.4383
Fukuzawa, H., Ishida, S., Miyachi, S. 1991 cDNA cloning and gene expression of carbonic anhydrase in Chlamydomonas reinhardtii. Can. J. Bot., 69, 1088-1096.
Keywords: photosynthesis; light regulation; zinc; CO2-concentrating mechanism; intracellular processing
Strain(s): 2235 
DOI: 10.1139/b91-139
Fuller, N. J., Campbell, C., Allen, D. J., Pitt, F. D., Le Gall, F., Vaulot, D., Scanlan, D. J. 2006 Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids. Aquat. Microb. Ecol., 43, 79-93.
Keywords: Photosynthetic picoeukaryotes; Plastid 16S rRNA; Arabian Sea; PCR
Strain(s): 25862588258926722673268726902693 
DOI: 10.3354/ame043079
Furihata, T., Pomprasirt, S., Sakurai, H. 1997 Characteristics of sulfite transport by Chlorella vulgaris. Plant Cell Physiol., 38, 398-403.
Keywords: Chlorella; plasma membrane; sulfite; transport
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a029182
Furusato, E., Asaeda, T., Manatunge, J. 2004 Tolerance for prolonged darkness of three phytoplankton species, Microcystis aeruginosa (Cyanophyceae), Scenedesmus quadricauda (Chlorophyceae), and Melosira ambigua (Bacillariophyceae). Hydrobiologia, 527, 153-162.
Keywords: algal bloom; artificial circulation; community succession; darkness tolerance; phytoplankton
Strain(s): 96298 
DOI: 10.1023/B:HYDR.0000043198.08168.d3
Gaget, V., Welker, M., Rippka, R., de Marsac, N. T. 2015 A polyphasic approach leading to the revision of the genus Planktothrix (Cyanobacteria) and its type species, P. agardhii, and proposal for integrating the emended valid botanical taxa, as well as three new species, Planktothrix paucivesiculata sp. nov.ICNP, Planktothrix tepida sp. nov.ICNP, Planktothrix serta sp. nov.ICNP, as genus and species names with nomenclatural standing under th ICNP. Syst. Appl. Microbiol., 38, 141-158.
Keywords: Polyphasic taxonomy; 16S rRNA gene; ITS; MLST; gyrB; rpoB; rpoC1; Planktothrix Anagnostidis & Komárek 1988ICN emend. gen. nov. ICNP
Strain(s): 9059281266 
DOI: 10.1016/j.syapm.2015.02.004
Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Nozaki, H., Smith, D. R. 2018 Exploring the limits and causes of plastid genome expansion in volvocine green algae. Genome Biol. Evol., 10, 2248-2254.
Keywords: Eudorina; genome expansion; mutational hazard hypothesis; Volvox; Yamagishiella
Strain(s): 378039823984 
PubMed: 30102347
DOI: 10.1093/gbe/evy175
Garcia, H. F. L. 2017 Mathematical modelling as a research tool in the cyanobacteria cultivation. PhD thesis, Friedrich-Alexander-Universität Erlangen-Nürnberg, Germany, 101 pp.
Strain(s): 39 
Garcia, N. S., Sexton, J., Riggins, T., Brown, J., Lomas, M. W., Martiny, A.C. 2018 High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions. Front. Microbiol., 9, 543 (article ID).
Strain(s): 2690 
PubMed: 29636735
DOI: 10.3389/fmicb.2018.00543
Gekeler, W., Grill, E., Winnacker, E.-L., Zenk, M. H. 1988 Algae sequester heavy metals via synthesis of phytochelatin complexes. Arch. Mikrobiol., 150, 197-202.
Strain(s): 687 
DOI: 10.1007/BF00425162
Gharaie Fathabad, S., Arumanayagam, A. S., Tabatabai, B., Chen, H., Lu, J., Sitther, V. 2019 Augmenting Fremyella diplosiphon cellular lipid content and unsaturated fatty acid methyl esters via sterol desaturase gene overexpression. Appl. Biochem. Biotechnol., 189, 1127-1140.
Keywords: Alkane; Biofuel; Cyanobacteria; Sterol desaturase; Transcript abundance
Strain(s): 210021073585 
PubMed: 31168708
DOI: 10.1007/s12010-019-03055-5
Ghosh, R., Makam, R., Krishnamurthy, V. 2018 Effect of critical parameters on biomass yield from Botryococcus braunii by Response surface methodology. Chem. Sci. Rev. Lett., 7, 409-420.
Keywords: Bio mass; Botryococcus Braunii; Microalgae; Response; Surface Methodology
Strain(s): 2199 
Giannelli, L., Yamada, H., Katsuda, T., Yamaji, H. 2015 Effects of temperature on the astaxanthin productivity and light harvesting characteristics of the green alga Haematococcus pluvialis. J. Biosci. Bioeng., 119, 345–350.
Keywords: Haematococcus pluvialis; Photobioreactor; Astaxanthin; Photosynthetic efficiency
Strain(s): 144 
PubMed: 25441445
DOI: 10.1016/j.jbiosc.2014.09.002
Giannelli, L., Yamaji, H., Katsuda, T. 2015 A numerical model for the quantification of light/dark cycles in microalgal cultures: Air-lift and bubble-column photobioreactor analysis by means of computational fluid dynamics. J. Chem. Eng. Jpn., 48, 61-71.
Keywords: Microalgae; Photobioreactor; Computational Fluid Dynamics; Flashing Light; Light Conversion Efficiency
Strain(s): 144 
DOI: 10.1252/jcej.14we093
Gile, G. H., Stern, R. F., James, E. R., Keeling, P. J. 2010 DNA barcoding of chlorarachniophytes using nucleomorph its sequences. J. Phycol., 46, 743-750.
Keywords: Bigelowiella; Chlorarachnion; culture collections; Gymnochlora; internal transcribed spacer; Lotharella; Norrisiella; Partenskyella
Strain(s): 62425842677 
DOI: 10.1111/j.1529-8817.2010.00851.x
Giovagnetti, V., Cataldo, M. L., Conversano, F., Brunet, C. 2010 Functional relation between growth, photosynthetic rate and regulation in the coastal picoeukaryote Phaeomonas sp. RCC 503 (Pinguiophyceae, Stramenopiles). J. Plankton Res., 32, 1501-1511.
Keywords: photoacclimation; picoeukaryote; xanthophyll cycle
Strain(s): 2693 
DOI: 10.1093/plankt/fbq074
Goldstein, M. 1964 Speciation and mating behavior in Eudorina. J. Protozool., 11, 317-344.
Strain(s): 735 
DOI: 10.1111/j.1550-7408.1964.tb01762.x
Gómez, F., Qiu, D., Lopes, R.M., Lin, S. 2015 Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the Dinoflagellate Gambierdiscus (Dinophyceae). PLoS One, 10, e0119676 (article ID).
Strain(s): 3451 
PubMed: 25831082
DOI: 10.1371/journal.pone.0119676
Gómez-Lojero, C., Leyva-Castillo, L. E., Herrera-Salgado, P., Barrera-Rojas, J., Ríos-Castro, E., Gutiérrez-Cirlos, E. B. 2018 Leptolyngbya CCM 4, a cyanobacterium with far-red photoacclimation from Cuatro Ciénegas Basin, México. Photosynthetica, 56, 342–353.
Keywords: chlorophyll f; Cuatro Ciénegas Basin; far-red light; photosynthesis; phycobilisomes.
Strain(s): 30 
DOI: 10.1007/s11099-018-0774-z
Gontcharov, A. A., Marin, B., Melkonian, M. 2003 Molecular phylogeny of conjugating green algae (Zygnemophyceae, Streptophyta) inferred from SSU rDNA sequence comparisons. J. Mol. Evol., 56, 89-104.
Keywords: Green algae; Streptophyta; Zygnemophyceae; Desmids; Molecular phylogeny; SSU rDNA
Strain(s): 125309 
PubMed: 12569426
DOI: 10.1007/s00239-002-2383-4
Gontcharov, A. A., Melkonian, M. 2011 A study of conflict between molecular phylogeny and taxonomy in the Desmidiaceae (Streptophyta, Viridiplantae): analyses of 291 rbcL sequences. Protist, 162, 253-267.
Strain(s): 285297452 
PubMed: 20971037
DOI: 10.1016/j.protis.2010.08.003
Gontcharov, A. A., Watanabe, M. M. 1999 Rare and new desmids (Desmidaceae, Chlorophyta) from Japan. Phycol. Res., 47, 233-240.
Keywords: desmids; new findings; new species; Japan
Strain(s): 839840841842 
DOI: 10.1046/j.1440-1835.1999.00172.x
González, M. A., Coleman, A. W., Gómez, P. I., Montoya, R. 2001 Phylogenetic relationship among various strains of Dunaliella (Chlorophyceae) based on nuclear ITS rDNA sequences. J. Phycol., 37, 604-611.
Keywords: Dunaliella; internal transcribed spacer; phylogenetics; rDNA; sequencing; strains; taxonomy
Strain(s): 35724107 
DOI: 10.1046/j.1529-8817.2001.037004604.x
González-Pleitera, M., Cirésa, S., Hurtado-Gallego, J., Leganés, F., Fernández-Piñas, F., Velázquez, D. 2019 Chapter 20 - Ecotoxicological assessment of antibiotics in freshwater using cyanobacteria. In Cyanobacteria: From Basic Science to Applications, Eds. by Mishra, A. K., Tiwari, D. N., Rai, A. N., Academic Press, pp. 339-417.
Keywords: Anabaena; Antibiotics; Biomarker; Bioreporter; Cyanobacteria; Ecotoxicology; Freshwater; Oxidative stress; Risk assessment
Strain(s): 192344107843 
DOI: 10.1016/B978-0-12-814667-5.00020-9
Gottschling, M., Keupp, H., Plotner, J., Knop, R., Willems, H., Kirsch, M. 2005 Phylogeny of calcareous dinoflagellates as inferred from ITS and ribosomal sequence data. Mol. Phylogenet. Evol., 36, 444-455.
Keywords: 5.8S rRNA; Calciodinellaceae; Internal transcribed spacer; Paleontology; Molecular systematics; Secondary structure
Strain(s): 7 
PubMed: 15964218
DOI: 10.1016/j.ympev.2005.03.036
Gowans, C. S. 1963 The conspecificity of Chlamydomonas eugametos and Chlamydomonas moewusii: an experimental approach. Phycologia, 3, 37-44.
Strain(s): 2219 
DOI: 10.2216/i0031-8884-3-1-37.1
Grauvogel, C., Petersen, J. 2007 Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte. Gene, 396(1), 125-133.
Keywords: evolution; primer design; cytosolic MVA pathway; plastid MEP pathway; Chlorophyta; Plantae; Cyanophora paradoxa
Strain(s): 476 
PubMed: 17433859
DOI: 10.1016/j.gene.2007.02.020
Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L. 2019 Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae. Proc. R. Soc. B-Biol. Sci., 286, 20190655 (article ID).
Keywords: photosynthesis; photosynthetically usable radiation; phycobilin; resource acquisition
Strain(s): 698702 
PubMed: 31088271
DOI: 10.1098/rspb.2019.0655
Grewe, C., Griehl, C. 2008 Time- and media-dependent secondary carotenoid accumulation in Haematococcus pluvialis. Biotechnol. J., 3, 1232-1244.
Keywords: Astaxanthin; Carotenoid biosynthesis; ; Haematococcus pluvialis; LC-MS; Media
Strain(s): 144 
PubMed: 18683169
DOI: 10.1002/biot.200800067
Grilli Caiola, M., Canini, A., Galiazzo, F., Rotilio, G. 1991 Superoxide dismutase in vegetative cells, heterocysts and akinetes of Anabaena cylindrica Lemm. FEMS Microbiol. Lett., 80, 161-166.
Keywords: Anabaena cylindrica; superoxide dismutase; heterocyst; nitrogenase activity
Strain(s): 19 
DOI: 10.1111/j.1574-6968.1991.tb04654.x
Grochau-Wright, Z. I., Hanschen, E. R., Ferris, P. J., Hamaji, T., Nozaki, H., Olson, B. J. S. C., Michod, R. E. 2017 Genetic basis for soma is present in undifferentiated volvocine green algae. J. Evol. Biol., 30, 1205–1218
Keywords: VARL domain; gene duplication; germ-soma differentiation; major transitions; multicellularity; volvocine algae
Strain(s): 1861 
PubMed: 28425150
DOI: 10.1111/jeb.13100
Grotjohann, N., Kowallik, W. 1989 Influence of blue light on the activity of phosphofructokinase in Chlorella kessleri. Physiol. Plant., 75, 43-46.
Keywords: blue/UV-photoreceptor; Chlorella kessleri; phosphofructokinase
Strain(s): 2160 
DOI: 10.1111/j.1399-3054.1989.tb02061.x
Gu, S., Dai, X., Niu, Q., Jiang, J., Liu, Y. 2021 Molecular, structural and biochemical characterization of a novel recombinant chlorophyllase from cyanobacterium Oscillatoria acuminata PCC 6304. Microb. Cell. Fact., 20, 14 (article ID).
Keywords: Chlorophyllase; Oscillatoria acuminata PCC 6304; Biochemical characteristic; Substrate specifcity; Catalytic triad
Strain(s): 2108 
DOI: 10.1186/s12934-020-01507-w
Guerriero, G., Sergeant, K., Legay, S., Hausman, J. F., Cauchie, H. M., Ahmad, I., Siddiqui, K. S. 2018 Novel insights from comparative in silico analysis of green microalgal cellulases. Int. J. Mol. Sci., 19, 1782 (article ID).
Keywords: cellulase; glycosyl hydrolase family 9; carbohydrate binding module (CBM); bioinformatics; RT-qPCR
Strain(s): 2863 
PubMed: 29914107
DOI: 10.3390/ijms19061782
Gugger, M., Lyra, C., Henriksen, P., Coute, A., Humbert, J.-F., Sivonen, K. 2002 Phylogenetic comparison of the cyanobacterial genera Anabena and Aphanizomenon. Int. J. Syst. Evol. Microbiol., 52, 1867-1880.
Keywords: Anabaena; Aphanizomenon; 16S rDNA; 16S-23S rDNA; RubisCO spacer
Strain(s): 81 
DOI: 10.1099/00207713-52-5-1867
Guidi-Rontani, C., Maheswari, U., Jabbari, K., Bowler, C. 2010 Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica. New Phytol., 185, 446-458.
Keywords: expressed sequence tags (ESTs); Fibrocapsa japonica; harmful algal blooms; heterokont; phylogeny; raphidophyte; stramenopile; toxicity
Strain(s): 4625606051303 
DOI: 10.1111/j.1469-8137.2009.03074.x
Guillou, L. 2011 Characterization of the Parmales: much more than the resolution of a taxonomic enigma. J. Phycol., 47, 2-4.
Strain(s): 2682336933703371 
DOI: 10.1111/j.1529-8817.2010.00951.x
Guillou, L., Chrétiennot-Dinet, M. J., Boulben, S., Moon-van der Staay, S. Y., Vaulot, D. 1999 Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): two new heterotrophic flagellates of picoplanktonic size. Protist, 150, 383-398.
Strain(s): 25862589 
DOI: 10.1016/S1434-4610(99)70040-4
Guillou, L., Chrétiennot-Dinet, M. J., Medlin, L. K., Claustre, H., Loiseaux-de Goër, S., Vaulot, D. 1999 Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J. Phycol., 35, 368-381.
Keywords: Bolidophyceae; diatoms; Heterokonta; marine picoeukaryotes; oligotrophic ocean; Stramenopiles
Strain(s): 2682 
DOI: 10.1046/j.1529-8817.1999.3520368.x
Guillou, L., Jacquet, S., Chrétiennot-Dinet, M. J., Vaulot, D. 2001 Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol., 26, 201-207.
Strain(s): 25862589 
DOI: 10.3354/ame026201
Guillou, L., Moon-van der Staay, S. Y., Claustre, H., Partensky, F., Vaulot, D. 1999 Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl. Environ. Microbiol., 65, 4528-4536.
Strain(s): 2586258926822691 
PubMed: 10508085
DOI: 10.1128/AEM.65.10.4528-4536.1999
Guionet, A., Hosseini, B., Teissié, J., Akiyama, H., Hosseini, H. 2017 A new mechanism for efficient hydrocarbon electro-extraction from Botryococcus braunii. Biotechnol. Biofuels, 10, 39 (article ID).
Keywords: Green energy; Biofuel; Hydrocarbon; Extraction; Botryococcus braunii kützing; Nanosecond pulsed electric field (nsPEF)
Strain(s): 836 
PubMed: 28228843
DOI: 10.1186/s13068-017-0724-1
Guionet, A., Oura, K., Akiyama, H., Hosano, H. 2019 The narrow window of energy application for oil extraction by arc discharge. J. Appl. Phycol., 31, 89–96.
Keywords: Botryococcus braunii; Hydrocarbons; Biofuel; Matrix; Extraction
Strain(s): 836 
DOI: 10.1007/s10811-018-1579-y
Guo, B., Lei, C., Ito, T., Jiang, Y., Ozeki, Y., Goda, K. 2016 High-throughput accurate single-cell screening of Euglena gracilis with fluorescence-assisted optofluidic time-stretch microscopy. PLoS One, 11, e0166214 (article ID).
Strain(s): 48 
PubMed: 27846239
DOI: 10.1371/journal.pone.0166214
Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017 High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy. Proc. of SPIE, 10076
Keywords: high-throughput screening; biofuel; Euglena gracilis; global warming; microfluidics; optofluidics; single-cell analysis; quantitative phase microscopy
Strain(s): 48 
DOI: 10.1117/12.2251157
Guo, Y., Zang, X., Cao, X., Zhang, F., Sun, D., Shang, M., Li, R., Yangzong, Z., Wei, X., Zhang, X. 2020 Cloning and expression of Allophycocyanin gene from Gracilariopsis lemaneiformis and studying the binding sites of phycocyanobilin on its α and β subunits. J. Appl. Phycol., 32, 2657-2671.
Keywords: Gracilariopsis lemaneiformis; Rhodophyta; Allophycocyanin; Expression; Fluorescence
Strain(s): 2104 
DOI: 10.1007/s10811-020-02102-7
Ha, J. H., Hidaka, T., Tsuno, H. 2009 Quantification of toxic Microcystis and evolution of its dominance ratio in blooms using real-time PCR. Environ. Sci. Technol., 43, 812-818.
Strain(s): 102 
PubMed: 19245020
DOI: 10.1021/es801265f
Ha, K., Takamura, N., Jang, M.-H. 2009 Microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish at different kairomone concentrations. Bull. Environ. Contam. Toxicol., 83, 761-765.
Keywords: microcystin; kairomone; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi
Strain(s): 89103107 
PubMed: 19669611
DOI: 10.1007/s00128-009-9841-2
Hagino, K., Bendif, E. M., Young, J. R. Kogame, K., Probert, I., Takano, Y., Horiguchi, T., de Vardas, C., Okada, H. 2011 New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliania huxleyi (Prymnesiophyceae) from the COX1b-ATP4 genes. J. Phycol., 47, 1164-1176.
Keywords: biogeography; coccolithophore; Emiliania huxleyi; mitochondrial DNA; morphotype
Strain(s): 83783810001311131213131314 
DOI: 10.1111/j.1529-8817.2011.01053.x
Hagiwara, T., Yagi, O., Takamura, Y., Sudo, R. 1984 Isolation of bacteria-free Microcystis aeruginosa from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 437-442 (in Japanese with English summary).
Strain(s): 604 
Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N., Bosch, T. C.G. 2018 Metabolic co-dependence drives the evolutionary ancient Hydra-Chlorella symbiosis. eLife, 7, e35122 (article ID).
Keywords: Chlorella; Hydra; evolutionary biology; genome; nitrogen metabolism; symbiosis
Strain(s): 216622352541 
PubMed: 29848439
DOI: 10.7554/eLife.35122
Hamada, S., Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Ito, M. 2006 Isolation of myosin XI genes from the Closterium peracerosum-strigosum-littorale complex and analysis of their expression during sexual reproduction. J. Plant Res., 119, 105-113.
Keywords: Closterium; Cytokinesis; Myosin XI; Real-time PCR; Sexual cell division; Sexual reproduction
Strain(s): 656768 
PubMed: 16456621
DOI: 10.1007/s10265-005-0249-8
Hamaji, T., Ferris, J. P., Nishii, I., Nishimura, Y., Nozaki, H. 2013 Distribution of the sex-determining geneMID and molecular correspondence of mating types within the isogamous genus Gonium (Volvocales, Chlorophyta). PLoS One, 8, e64385 (article ID).
Strain(s): 6526536546558518521038103917081710171124552457 
PubMed: 23696888
DOI: 10.1371/journal.pone.0064385
Hamaji, T., Ferris, P. J., Coleman, A.W., Waffenschmidt, S., Takahashi, F., Nishii, I., Nozaki, H. 2008 Identification of the minus-dominance gene ortholog in the mating-type locus of Gonium pectorale. Genetics, 178, 283-294.
Strain(s): 17101711 
PubMed: 18202374
DOI: 10.1534/genetics.107.078618
Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R. 2017 Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biol. Evol., 9, 993-999.
Keywords: Eudorina; linear mitochondrial DNA; telomere; Volvox; Yamagishiella
Strain(s): 39823984 
PubMed: 31972029
DOI: 10.1093/gbe/evx060
Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 1, 17 (article ID).
Strain(s): 398239833984398540184100 
DOI: 10.1038/s42003-018-0019-5
Hamaji, T., Mogi, Y., Ferris, P. J., Mori, T., Miyagishima, S., Kabeya, Y., Nishimura, Y., Toyoda, A., Noguchi, H., Fujiyama, A., Olson, B. J. S. C., Marriage, T. N., Nishii, I., Umen, J. G. Nozaki, H. 2016 Sequence of the Gonium pectorale mating locus reveals a complex and dynamic history of changes in volvocine algal mating haplotypes. G3-Genes Genomes Genet., 6, 1179-1189.
Keywords: Gonium; Chlamydomonas; Volvox; mating locus; evolution; Genetics of Sex
Strain(s): 2863 
PubMed: 26921294
DOI: 10.1534/g3.115.026229
Hamaji, T., Smith, DR., Noguchi, H., Toyoda, A., Suzuki, M., Kawai-Toyooka, H., Fujiyama, A., Nishii, I., Marriage, T., Olson, B. J. S. C., Nozaki, H. 2013 Mitochondrial and plastid genomes of the colonial green alga Gonium pectorale give insights into the origins of organelle DNA architecture within the Volvocales. PLoS One, 8, e57177 (article ID).
Strain(s): 2863 
PubMed: 23468928
DOI: 10.1371/journal.pone.0057177
Hamamoto, Y., Honda, D. 2019 Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem. PLoS One, 14, e0208941 (article ID).
Strain(s): 3243712 
PubMed: 30625142
DOI: 10.1371/journal.pone.0208941
Hamana, K. 2008 Cellular polyamines of phototrophs and beterotrophs belonging to the lower eukaryotic phyla Cercozoa, Euglenozoa, Heterokonta and Metamonada. J. Gen. Appl. Microbiol., 54, 135-140.
Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine
Strain(s): 9157186118253323330333548603622100210031011104413031380144014431444 
PubMed: 18497488
DOI: 10.2323/jgam.54.135
Hamana, K., Aizaki T., Arai, E., Saito, A., Uchikata, K., Ohnishi, H. 2004 Distribution of norspermidine s a cellular polyamine within micro green algae including non-photosynthetic achlorophyllous Polytoma, Polytomella, Prototheca and Helicosporidium. J. Gen. Appl. Microbiol., 50, 289-295.
Keywords: Chlorophyta; green alga; Helicosporidium; norspermidine; polyamine; Polytoma; Polytomella; Prototheca
Strain(s): 18251254255296329483486536 
Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─ Microb. Resour. Syst., 32, 179-186.
Keywords: cyanobacteria; homospermidine; polyamine; thermospermine
Strain(s): 208620872134241225393373 
Hamana, K., Furuchi, T., Nakamura, T., Hayashi, H., Niitsu, M. 2017 Occurrence of penta-amines, hexa-amines and N-methylated polyamines in unicellular eukaryotic organisms belonging to the phyla Heterokontophyta and Labyrinthulomycota of the subdomain Stramenopiles. J. Gen. Appl. Microbiol., 62, 320-325.
Keywords: Bioaccumulation; clam Corbicula leana; cyanotoxins; elimination; Microcystis
Strain(s): 2535 
PubMed: 27773915
DOI: 10.2323/jgam.2016.05.001
Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine analysis of unicellular, colonial, and multicellular green algae —Detection of aminobutylcadaverine, N1-aminopentylspermidine, N8-aminopentylspermidine, and penta-amines.— Microb. Resour. Syst., 34, 73-82.
Keywords: aminobutylcadaverine; aminopentylspermidine; green alga; penta-amine; polyamine; thermospermine
Strain(s): 1835242691735127112782185218722352261254025723983 
Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine distribution profiles in unicellular and multicellular red algae (phylum Rhodophyta) —Detection of 1,6-diaminohexane, aminobutylcadaverine, canavalmine and aminopropylcanavalmine.— Microb. Resour. Syst., 34, 83-91.
Keywords: aminobutylcadaverine; aminopropylcanavalmine; canavalmine; diaminohexane; polyamine; red algae; Rhodophyta
Strain(s): 55110321572195721382140263626622742 
Hamana, K., Kobayashi, M., Yokota, A., Sekiguchi, H., Niitsu, M. 2008 Cellular polyamine profiles in cyanobacteria. Microbiol. Cult. Coll., 24, 3-8.
Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine
Strain(s): 263336462062082302672683053614164334344815075975989319321031211521332135 
Hamana, K., Matsuzaki, S., Niitsu, M., Samejima, K., Nagashima, H. 1990 Polyamines of unicellular thermoacidophilic red alga Cyanidium caldarium. Phytochemistry, 29, 377-380.
Keywords: Cyanidium caldarium; Rhodophyta; red algae; polyamines; chemotaxonomy
Strain(s): 25021373891 
DOI: 10.1016/0031-9422(90)85082-Q
Hamana, K., Miyagawa, K., Matsuzaki, S. 1983 Occurrence of syn-homospermidine as the major polyamine in nitrogen-fixing cyanobacteria. Biochem. Biophys. Res. Commun., 112, 606-613.
Strain(s): 19373921293275 
PubMed: 6405746
DOI: 10.1016/0006-291X(83)91507-3
Hamana, K., Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240.
Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta
Strain(s): 82742762772823533886997067157417637641016101710321036133214411456145714621463146714733377 
PubMed: 17116972
DOI: 10.2323/jgam.52.235
Hamana, K., Niitsu, M., Hayashi, H. 2013 Occurrence of homospermidine and thermospermine as a cellular polyamine in unicellular chlorophyte and multicellular charophyte green algae J. Gen. Appl. Micobiol., 59, 313-319.
Keywords: green alga; homospermidine; polyamine; thermospermine
Strain(s): 1815116025529630636036364072283614091410141114191837216421993374 
PubMed: 24005181
DOI: 10.2323/jgam.59.313
Hamana, K., Sakamoto, A., Nishina, M., Niitsu, M. 2004 Cellular polyamine profile of the phyla Dinophyta, Apicomplexa, Ciliophora, Euglenozoa, Cercozoa and Heterokonta. J. Gen. Appl. Microbiol., 50, 297-303.
Keywords: Apicomlexa; Cercozoa; Ciliophora; Dinophyta; Euglenozoa; Heterokonta; norspermidine; polyamine
Strain(s): 12286304331381387463 
PubMed: 15747233
DOI: 10.2323/jgam.50.297
Han, J.-I., Yao, J., Lee, C., Park, J., Choi, Y.-E. 2019 A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform. Algal Res., 39, 101464.
Keywords: Haematococcus lacustris; Microfabricated structure; Astaxanthin; ROS; Mechanical stimulation
Strain(s): 144 
DOI: 10.1016/j.algal.2019.101464
Han, S.-I., Chang, S. H., Lee, C., Jeon, M. S., Heo, Y. M., Kim, S. 2020 Astaxanthin biosynthesis promotion with pH shock in the green microalga, Haematococcus lacustris. Bioresour. Technol., 314, 123725 (article ID).
Keywords: Haematococcus lacustris; Astaxanthin; pH shock; Biological change; Mass culture
Strain(s): 144 
PubMed: 32615445
DOI: 10.1016/j.biortech.2020.123725
Hanagata, N., Karube, I., Chihara, M., Silva, P. C. 1998 Reconsideration of the taxonomy of ellipsoidal species of Chlorella (Trebouxiophyceae, Chlorophyta), with establishment of Watanabea gen. nov. Phycol. Res., 46, 221-229.
Keywords: Chlorella saccharophila; ellipsoidal species of Chlorella; pyrenoid-lacking Chlorella-like algae: Watanabea gen. et sp. nov.
Strain(s): 2189 
DOI: 10.1111/j.1440-1835.1998.tb00117.x
Hanazato, T. 1991 Interrelations between Microcystis and Cladocera in the highly eutrophic Lake Kasumigaura, Japan. Int. Revue ges. Hydrobiol., 76, 21-36.
Keywords: Microcystis; Cladocera; toxicity; food chain; Lake Kasumigaura
Strain(s): 44298299 
DOI: 10.1002/iroh.19910760104
Handa, S., Nakahara, M., Tsubota, H., Deguchi, H., Nakano, T. 2003 A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res., 51, 203-210.
Keywords: aerial algae; molecular phylogeny; Stichococcus ampulliformis sp. nov.; Trebouxiophyceae; 18SrRNA gene
Strain(s): 996 
DOI: 10.1046/j.1440-1835.2003.00311.x
Hang, L. T., Mori, K., Tanaka, Y., Morikawa, M., Toyama, T. 2020 Enhanced lipid productivity of Chlamydomonas reinhardtii with combination of NaCl and CaCl2 stresses. Bioprocess. Biosyst. Eng., 43, 971–980.
Keywords: Chlamydomonas reinhardtii; NaCl; CaCl2; Lipid accumulation; Biofuel production
Strain(s): 2235 
PubMed: 32008095
DOI: 10.1007/s00449-020-02293-w
Hano, T., Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID).
Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase
Strain(s): 3715 
PubMed: 31499295
DOI: 10.1016/j.jchromb.2019.121779
Hanschen, E. R., Davison, D. R., Ferris, P. J., Michod, R. E. 2018 On the rediscovery of Volvox perglobator (Volvocales, Chlorophyceae) and the evolution of outcrossing from self-fertilization. Evol. Ecol. Res., 19, 299-318.
Keywords: homothallism; phylogenetics; reversion; self-fertilization; sexual reproduction; volvocine green algae
Strain(s): 2894214564584604745225415435445455645665685695715725745785826537327518518568728768778788808821038112211401148115611571362170817111713185924572569273833823388378037823986 
Hanschen, E. R., Ferris, P. J., Michod, R. E. 2014 Early evolution of the genetic basis for soma in the Volvocaceae. Evolution, 68, 2014-2025.
Keywords: Gene duplication; germ-soma differentiation; major transitions; multicellularity; regA; Volvox
Strain(s): 2739 
PubMed: 4689915
DOI: 10.1111/evo.12416
Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Multicellularity drives the evolution of sexual traits. Am. Nat., 192, E93-E10.
Keywords: sex; volvocine green algae; multicellularity; ancestral state; reconstruction; anisogamy; sexual dimorphism
Strain(s): 28941842145645846052254154354454556456656856957157257457858265373275185185685787287587687787888088288389189210381362171117132457256927383382338837803782 
PubMed: 30125231
DOI: 10.1086/698301
Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Repeated evolution and reversibilityof self-fertilization in the volvocinegreen algae. Evolution, 72, 386-398.
Keywords: Haploid; phylogenetics; self-fertilization; sex; sexual reproduction; volvocine green algae
Strain(s): 28941845645846054154354454556456656856957157257457858265373285185685787287587687787888088288389189210381362171117132457256927383382338837803782 
PubMed: 29134623
DOI: 10.1111/evo.13394
Hanschen, E. R., Marriage, T.N., Ferris, P.J., Hamaji, T., Toyoda, A., Fujiyama,A., Neme,R., Noguchi,H., Minakuchi, Y., Suzuki, M., Kawai-Toyooka, H., Smith, D.R., Sparks, H., Anderson, J., Bakaric, R., Luria, V., Karger, A., Kirschner, M.W., Durand, P.M., Michod, R.E., Nozaki, H., Olson, B.J. 2016 The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat. Commun., 7, 11370 (article ID).
Strain(s): 2863 
PubMed: 27102219
DOI: 10.1038/ncomms11370
Hara, Y. 1990 Chattonella ovata Y. Hara et Chihara mss. In Red Tide Organisms in Japan - An Illustrated Taxonomic Guide, Eds. by Fukuyo, Y., Takano, H., Chihara, M. & Matsuoka, K., Uchida Rokakuho, Tokyo, pp. 340-341 (in Japanese with English summary).
Strain(s): 603 
Hara, Y., Chihara, M. 1982 Ultrastructure and taxonomy of Chattonella (Class Raphidophyceae) in Japan. Jpn. J. Phycol. (Sôrui), 30, 47-56 (in Japanese with English summary).
Keywords: Chattonella; Chattonella marina comb. nov.; Raphidophyceae; red tides; taxonomy; ultrastructure
Strain(s): 161 
Hara, Y., Doi, K., Chihara, M. 1994 Four new species of Chattonella (Raphidophyceae, Chromophyta) from Japan. Jpn. J. Phycol. (Sôrui), 42, 407-420.
Keywords: Chattonella; C. globosa; C. minima; C. ovata; C. verruculosa; Raphidophyceae; red tide organisms; taxonomy
Strain(s): 118161603670849 
Hara, Y., Inouye, I., Chihara, M. 1985 Morphology and ultrastructure of Olisthodiscus luteus (Raphidophyceae) with special reference to the taxonomy. Bot. Mag. Tokyo, 98, 251-262.
Keywords: Heterosigma; Olisthodiscus luteus; Raphidophyceae; red tide flagellate; taxonomy of Olisthodiscus; ultrastructure of Olisthodiscus
Strain(s): 15 
DOI: 10.1007/BF02488775
Harada, K-I., Ozaki, K., Tsuzuki, S., Kato, H., Hasegawa, M., Kuroda, E. K., Arii, S., Tsuji, K. 2009 Blue color formation of cyanobacteria with b-cyclocitral. J. Chem. Ecol., 35, 1295-1301.
Keywords: b-cyclocitral; cyanobacteria; lysis; blue color formation; acid stress
Strain(s): 73102103112298611808 
PubMed: 19936836
DOI: 10.1007/s10886-009-9706-5
Harada, R., Hirakawa, Y., Yabuki, A., Kashiyama, Y., Maruyama, M., Onuma, R., Soukal, P., Miyagishima, S., Hampl, V., Tanifuji, G., Inagaki, Y. 2020 Inventory and evolution of mitochondrion-localized family a DNA polymerases in Euglenozoa. Pathogens, 9, 257 (article ID).
Keywords: DNA replication; family A DNA polymerase; plant and protist organellar DNA polymerase; Trypanosomatida; Kinetoplastea; Diplonemea; Euglenida; Prokinetoplastina
Strain(s): 381 
PubMed: 32244644
DOI: 10.3390/pathogens9040257
Haraguchi, Y., Shimizu, T. 2021 Three-dimensional tissue fabrication system by co-culture of microalgae and animal cells for production of thicker and healthy cultured food. Biotechnol. Lett., 43, 1117–1129.
Strain(s): 2170 
PubMed: 33689062
DOI: 10.1007/s10529-021-03106-0
Harashima, A., Watanabe, M., Fujishiro, I. 1988 Evolution of bioconvection patterns in a culture of motile flagellates. Phys. Fluids, 31, 764-775.
Strain(s): 6 
DOI: 10.1063/1.866812
Hariganeya, N., Tanimoto, Y., Yamaguchi, H., Nishimura, T., Tawong, W., Sakanari, H., Yoshimatsu, T., Sato, S., Preston, C. M., Adachi, M. 2013 Quantitative PCR method for enumeration of cells of cryptic species of the toxic marine dinoflagellate Ostreopsis spp. in Coastal Waters of Japan. PLoS One, 8, e57627 (article ID).
Strain(s): 4118 
PubMed: 23593102
DOI: 10.1371/journal.pone.0057627
Harke, M. J., Berry, D. L., Ammerman, J. W., Gobler, C. J. 2012 Molecular response of the bloom-forming cyanobacterium, Microcystis aeruginosa, to phosphorus Limitation. Microb. Ecol., 63, 188-198.
Strain(s): 843 
PubMed: 21720829
DOI: 10.1007/s00248-011-9894-8
Harke, M. J., Jankowiak, J. G., Morrell, B. K., Gobler, C. J. 2017 Transcriptomic responses in the bloom-forming cyanobacterium Microcystis 2 induced during exposure to zooplankton. Appl. Environ. Microbiol., 83, e02832-16 (article ID).
Keywords: microcystis; RNA-Seq; transcriptome; grazing
Strain(s): 843 
PubMed: 28003198
DOI: 10.1128/AEM.02832-16
Harmon, J., Mikami, H., Kanno, H., Ito, T., Goda, K. 2020 Accurate classification of microalgae by intelligent frequency-division-multiplexed fluorescence imaging flow cytometry. OSA Continuum, 3, 430-440.
Strain(s): 229336404141 
DOI: 10.1364/OSAC.387523
Hase, E., Mihara, S., Otsuka, H. 1959 An additional note on the nature of sulfur-containing peptide nucleotide complex obtained from Chlorella and yeast. J. Gen. Appl. Microbiol., 5, 43-50.
Strain(s): 2170 
DOI: 10.2323/jgam.5.43
Hase, E., Mihara, S., Otsuka, H., Tamiya, H. 1959 Sulfur-containing peptide-nucleotide complex isolated from Chlorella and yeast cells. Arch. Biochem. Biophys., 83, 170-177.
Strain(s): 2170 
PubMed: 13662003
DOI: 10.1016/0003-9861(59)90021-9
Hase, E., Mihara, S., Tamiya, H. 1960 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. I. Plant Cell Physiol., 1, 131-142.
Strain(s): 2170 
Hase, E., Mihara, S., Tamiya, H. 1960 Some data on the nature of sulfur-containing peptide-nucleotide compounds obtained from Chlorella cells at different developmental stages in their life cycle. J. Gen. Appl. Microbiol., 6, 61-67.
Strain(s): 2170 
DOI: 10.2323/jgam.6.61
Hase, E., Mihara, S., Tamiya, H. 1960 Sulfur-containing deoxypentose polynucleotides obtained from Chlorella cells. Biochim. Biophys. Acta, 39, 381-382.
Strain(s): 2170 
DOI: 10.1016/0006-3002(60)90187-6
Hase, E., Mihara, S., Tamiya, H. 1961 Capabilities of various sulfur substances in inducing the cell division of Chlorella arrested by sulfur deficiency. J. Gen. Appl. Microbiol., 7, 173-176.
Strain(s): 2170 
DOI: 10.2323/jgam.7.173
Hase, E., Mihara, S., Tamiya, H. 1961 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. II. Plant Cell Physiol., 2, 9-24.
Strain(s): 2170 
Hase, E., Miyachi, S., Mihara, S. 1963 A preliminary note on the phosphorus compounds in chloroplast and volutin granules isolated from Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 619-626.
Strain(s): 2170 
Hase, E., Morimura, Y., Mihara, S., Tamiya, H. 1958 The role of sulfur in the cell division of Chlorella. Arch. Mikrobiol., 32, 87-95.
Strain(s): 2170 
DOI: 10.1007/BF00409966
Hase, E., Morimura, Y., Tamiya, H. 1957 Some data on the growth physiology of Chlorella studied by the technique of synchronous culture. Arch. Biochem. Biophys., 69, 149-165.
Strain(s): 2170 
PubMed: 13445189
DOI: 10.1016/0003-9861(57)90482-4
Hase, E., Moriyama, Y., Tamiya, H. 1960 A short remark on the role of sulfur in the cell division of Chlorella. J. Gen. Appl. Microbiol., 6, 68-69.
Strain(s): 2170 
DOI: 10.2323/jgam.6.68
Hase, E., Otsuka, H., Mihara, S., Tamiya, H. 1959 Role of sulfur in the cell division of Chlorella, studied by the technique of synchronous culture. Biochim. Biophys. Acta, 35, 180-189.
Strain(s): 2170 
PubMed: 13851937
DOI: 10.1016/0006-3002(59)90346-4
Hasegawa, H., Maki, T., Asano, K., Ueda, K., Ueda, K. 2004 Detection of iron(III)-binding ligands originating from marine phytoplankton using cathodic stripping voltammetry. Anal. Sci., 20, 89-93.
Strain(s): 116 
PubMed: 14753263
DOI: 10.2116/analsci.20.89
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A. 2018 Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae. J. Appl. Phycol., 30 2215-2225.
Keywords: Microalgae; Growth; Fe uptake; APCs; Chelating ligands
Strain(s): 16 
DOI: 10.1007/s10811-018-1462-x
Hasegawa, M., Nishizawa, A., Tsuji, K., Kimura, S., Harada, K. 2012 Volatile organic compounds derived from 2-keto-acid decarboxylase in Microcystis aeruginosa. Microbes Environ., 27, 525-528.
Keywords: cyanobacteria; volatile organic compounds; 3-methyl-1-butanol; 2-keto-acid decarboxylase; Microcystis
Strain(s): 843 
PubMed: 23047148
DOI: 10.1264/jsme2.ME12099
Hasegawa, M., Yoshida, T., Yabuta, M., Terazima, M., Kumazaki, S. 2011 Anti-Stokes fluorescence spectra of chloroplasts in Parachlorella kessleri and maize at room temperature as characterized by near-infrared continuous-wave laser fluorescence microscopy and absorption microscopy. J. Phys. Chem. B, 115, 4184-4194.
Strain(s): 2160 
PubMed: 21417246
DOI: 10.1021/jp111306k
Hashimoto, H., Murakami, S. 1982 Changes in morphology and ultrastructure of chloroplast along its division cycle in Euglena gracilis cultured synchronously under photoautotrophic condition. Scientific Papers of the College of General Education, Univ. of Tokyo, 32, 55-64.
Strain(s): 48 
Hashimoto, H., Murakami, S. 1982 Chloroplast replication and loss of chloroplast DNA induced by nalidixic acid in Euglena gracilis. Cell Struct. Funct., 7, 111-120.
Strain(s): 48 
DOI: 10.1247/csf.7.111
Hashimoto, H., Murakami, S. 1983 Effects of cycloheximide and chloramphenicol on chloroplast replication in synchronously dividing cultured cells of Euglena gracilis. New Phytol., 94, 521-529.
Strain(s): 48 
DOI: 10.1111/j.1469-8137.1983.tb04861.x
Hashizume, M., Yoshida, M., Demura, M., Watanabe, M. M. 2020 Culture study on utilization of phosphite by green microalgae. J. Appl. Phycol., 32, 889–899.
Keywords: Phosphite utilization; Chlorella vulgaris; Coccomyxa subellipsoidea
Strain(s): 216621702280 
DOI: 10.1007/s10811-020-02088-2
Hasunuma, T., Kikuyama, F., Matsuda, M., Aikawa, S., Izumi, Y., Kondo, A. 2013 Dynamic metabolic profiling of cyanobacterial glycogen biosynthesis under conditions of nitrate depletion. J. Exp. Bot., 64, 2943-2954.
Keywords: 13C; cyanobacteria; glycogen; in vivo labelling; metabolic turnover; metabolomics
Strain(s): 39 
PubMed: 23658429
DOI: 10.1093/jxb/ert134
Hata, N., Ogbonna, J. C., Hasegawa, Y., Taroda, H., Tanaka, H. 2001 Production of astaxanthin by Haematococcus pluvialis in a sequential heterotrophic-photoautotrophic culture. J. Appl. Phycol., 13, 395-402.
Keywords: astaxanthin; carotenoids; Haematococcus pluvialis; heterotrophic; photoautotrophic; two phase culture
Strain(s): 144 
DOI: 10.1023/A:1011921329568
Hatakeyama, S., Fukushima, S., Kasai, F., Shiraishi, H. 1994 Assessment of herbicide effects on algal production in the Kokai River (Japan) using a model stream and Selenastrum bioassay. Ecotoxicology, 3, 143-156.
Keywords: herbicides; effects; algal production; algal community; channel carrying river water; bioassay; pesticide analysis
Strain(s): 35 
Hatano, S. 1978 Studies on frost hardiness in Chlorella ellipsoidea: Effects of antimetabolites, surfactants, hormones, and sugars on the hardening process in the light and dark. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 175-196.
Strain(s): 2170 
Hatano, S., Akashi, H., Nogata, Y., Yoshimoto, M. 1987 Fatty acid synthetase system in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness , Ed. by Li, P. H., Alan R. Liss, Inc., New York, pp. 101-115.
Strain(s): 2170 
Hatano, S., Hara, Y., Takahashi, M. 1983 Preliminary study on the effects of photoperiod and nutrients on the vertical migratory behavior of a red tide flagellate, Heterosigma akashiwo. Jpn. Jpn. J. Phycol. (Sôrui), 31, 263-269 (in Japanese with English summary).
Keywords: Heterosigma akashiwo; nutrients; photoperiod; vertical migration
Strain(s): 6 
Hatano, S., Joh, T., Miyamoto, T., Yoshimoto, M. 1992 Preparation of protoplasts from Chlorella ellipsoidea C-27. Plant Cell Physiol., 33, 651-655.
Keywords: cell wall-lytic enzyme; chitosanase; Chlorella ellipsoidea C-27; protoplast
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a078301
Hatano, S., Kabata, K. 1982 Transition of lipid metabolksm in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 145-156.
Strain(s): 2170 
Hatano, S., Kabata, K., Sadakane, H. 1981 Transition of lipid synthesis from chloroplasts to a cytoplasmic system during hardening in Chlorella ellipsoidea. Plant Physiol., 67, 216-220.
Strain(s): 6872170 
PubMed: 16661649
DOI: 10.1104/pp.67.2.216
Hatano, S., Kabata, K., Yoshimoto, M., Sadakane, H. 1982 Accumulation of free fatty acid during hardening of Chlorella ellipsoidea. Plant Physiol., 70, 1173-1177.
Strain(s): 2170 
PubMed: 16662634
DOI: 10.1104/pp.70.4.1173
Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. I. Development of frost hardiness of Chlorella ellipsoidea in cynchronous culture. Plant Cell Physiol., 17, 451-458.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075298
Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. II. Effects of inhibitors of RNA and protein synthesis and surfactants on the process of hardening. Plant Cell Physiol., 17, 643-651.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075320
Hattori, A. 1957 Studies on the metabolism of urea and other nitrogenous compounds in Chlorella ellipsoidea. J. Biochem., 44, 253-273.
Strain(s): 2170 
Hattori, A., Fujita, Y. 1959 Crystalline phycobilin chromoproteids obtained from a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 633-644.
Strain(s): 37 
DOI: 10.1093/jb/46.5.633
Hattori, A., Fujita, Y. 1959 Effect of pre-illumination on the formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 1259-1261.
Strain(s): 37 
Hattori, A., Fujita, Y. 1959 Formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis, as induced by illumination with colored lights. J. Biochem., 46, 521-524.
Strain(s): 37 
Hattori, A., Fujita, Y. 1959 Spectroscopic studies on the phycobilin pigments obtained from blue-green and red algae. J. Biochem., 46, 903-909.
Strain(s): 37 
Hattori, A., Uesugi, I. 1968 Ferredoxin-dependent photoreduction of nitrate and nitrite by subcellular preparations of Anabaena cylindrica. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 201-205.
Strain(s): 19 
Hautala, H., Lamminmäki, U., Spoof, L., Nybom, S., Meriluoto, J., Vehniäinen, M. 2013 Quantitative PCR detection and improved sample preparation of microcystin-producing Anabaena, Microcystis and Planktothrix. Ecotox. Environ. Safe., 87, 49-56.
Keywords: Microcystin; Cyanobacteria; Quantitative PCR; mcyB; Sample prepararion
Strain(s): 107 
DOI: 10.1016/j.ecoenv.2012.10.008
Hayakawa, T., Akita, Y., Arai, F. 2018 Parallel trapping of single motile cells based on vibration‑induced flow. Microfluid. Nanofluid., 22, 42 (article ID).
Keywords: Acoustofluidics; Cell manipulation; On-chip cell Manipulation; Vibration-induced flow; Motile cells
Strain(s): 48 
DOI: 10.1007/s1040 4-018-2062-4
Hayama, M., Nakada, T., Hamaji, T., Nozaki, H. 2010 Morphology, molecular phylogeny and taxonomy of Gonium maiaprilis sp. nov. (Goniaceae, Chlorophyta) from Japan. Phycologia, 49, 221-234.
Keywords: Chlorophyceae; Goniaceae; Gonium; Gonium maiaprilis sp. nov.; ITS; molecular phylogeny; morphology; rbcL; reproduction; taxonomy
Strain(s): 2455245624572458245924602461 
DOI: 10.2216/PH09-56.1
Hayashi, S., Jang, J. E., Itoh, K., Suyama, K., Yamamoto, H. 2011 Construction of river model biofilm for assessing pesticide effects. Arch. Environ. Contam. Toxicol., 60, 44-56.
Strain(s): 71489803 
PubMed: 20422166
DOI: 10.1007/s00244-010-9531-4
Hayashia, T., Otakia, R., Hiraia, K., Tsuzukia, M., Sato, N. 2017 Optimization of seawater-based triacylglycerol accumulation in a freshwater green alga, Chlorella kessleri, through simultaneous imposition of loweredtemperature and enhanced-light intensity. Algal Res., 28, 100-107.
Keywords: Chlorella kessleri; Freshwater green algae; Low temperature; Moderate light; Seawater; Triacylglycerol
Strain(s): 2152 
DOI: 10.1016/j.algal.2017.10.016
Hayashida, G., Schneider, C., Espíndola, L., Arias, D., Riquelme, C., Wulff-Zottele, C., Díaz-Palma, P., Rivas, M. 2017 Characterization of a Chlorophyta microalga isolated from a microbial mat in Salar de Atacama (northern Chile) as a potential source of compounds for biotechnological applications. Phycol. Res., 65, 202-211.
Keywords: Altiplane; Chlorella sorokiniana; extreme tolerant; microalgae; microbial mat; oleaginous strain, polyunsaturated; fatty acid; stearic acid
Strain(s): 2173 
DOI: 10.1111/pre.12176
Hayashi-Ishimaru, Y., Ehara, M., Inagaki, Y., Ohama, T. 1997 A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan. Curr. Genet., 32, 296-299.
Keywords: Prymnesiophyta; deviant genetic code; cytochrome c oxidase subunit I; the codon-capture theory
Strain(s): 8353388 
PubMed: 9342410
DOI: 10.1007/s002940050280
Hayashi-Ishimaru, Y., Ohama, T., Kawatsu, Y., Nakamura, K., Osawa, S. 1996 UAG is a sense codon in several chlorophycean mitochondria. Curr. Genet., 30, 29-33.
Keywords: deviant genetic code; COXI; Chlorophyceaen mitochondria; release factor
Strain(s): 96209227415 
PubMed: 8662206
DOI: 10.1007/s002940050096
Hee-jin, C., Baik-ho, K., Jeong-dong, K., Myung-soo, H. 2005 Streptomyces neyagawaensis as a control for the hazardous biomass of Microcystis aeruginosa (Cyanobacteria) in eutrophic freshwaters. Biol. Control, 33, 335-343.
Keywords: Antialgal bacterium; Streptomyces neyagawaensis; Microcystis aeruginosa; Biological control; Freshwater; Cyanobacterial bloom
Strain(s): 298 
DOI: 10.1016/j.biocontrol.2005.03.007
Hepperle, D., Nozaki, H., Hohenberger, S., Huss, V. A. R., Morita, E., Krienitz, L. 1998 Phylogenetic position of the Phacotaceae within the Chlamydophyceae as revealed by analysis of 18S rDNA and rbcL sequences. J. Mol. Evol., 47, 420-430.
Keywords: Phacotaceae; Volvocales; 18S rDNA phylogeny; lorica-bearing flagellates; green algae
Strain(s): 446858859861862 
PubMed: 9767687
DOI: 10.1007/PL00006399
Higashiyama, T., Yamada, T. 1991 Electrophoretic karyotyping and chromosomal gene mapping of Chlorella. Nucleic Acids Res., 19, 6191-6195.
Strain(s): 2163216621712189 
PubMed: 1956777
DOI: 10.1093/nar/19.22.6191
Higo, A., Kawashima, T., Borg, M., Zhao, M., López-Vidriero, I., Sakayama, H., Montgomery, S, A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T., Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y., Yamato, K. T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J. M., Twell, D., Berger, F., Araki, T. 2018 Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nat. Commun., 9, 5283 (article ID).
Strain(s): 6768 
PubMed: 30538242
DOI: 10.1038/s41467-018-07728-3
Higuchi, R., Song, C., Hoshina, R., Suzaki, T. 2018 Endosymbiosis-related changes in ultrastructure and chemical composition of Chlorella variabilis (Archaeplastida, Chlorophyta) cell wall in Paramecium bursaria (Ciliophora, Oligohymenophorea). Eur. J. Protistol., 66, 149-155.
Keywords: Cell wall; Chlorella variabilis; GlycosaminoglycansParamecium bursaria; Symbiosis
Strain(s): 3374 
PubMed: 30286318
DOI: 10.1016/j.ejop.2018.09.003
Higuchi, S., Sugahara, F., Pascual-Anaya, J., Takagi, W., Oisi, Y., Kuratani, S. 2019 Inner ear development in cyclostomes and evolution of the vertebrate semicircular canals. Nature, 565, 347–350.
Strain(s): 3374 
PubMed: 30518864
DOI: 10.1038/s41586-018-0782-y
Hiki, K., Tsuchikawa, M., Nakajima, F., Tobino, T. 2019 Identification of antioxidant genes in the ostracod Heterocypris incongruens through de novo transcriptome sequencing. J. JSCE, 7, 133-142.
Keywords: Heterocypris incongruens, ostracod, antioxidant genes, de novo transcriptome, toxicity, road dust
Strain(s): 94 
DOI: 10.2208/journalofjsce.7.1_133
Hikihara, R., Yamasaki, Y., Shikata, T., Nakayama, N., Sakamoto, S., Kato, S., Hatate, H., Tanaka, R. 2020 Analysis of phytosterol, fatty acid, and carotenoid composition of 19 microalgae and 6 bivalve species. J. Aquat. Food Prod. Technol., 29, 461-479.
Keywords: Microalgae; bivalve; phytosterol; fucosterol; fatty acid
Strain(s): 110324 
DOI: 10.1080/10498850.2020.1749744
Hino, S. 1991 An examination of algal bioassay method for agricultural chemicals and heavy metals in a water environment. Hokkaido Kankyô Kagaku Kenkyû Sentâ Syohô, 18, 41-49 (in Japanese with English summary).
Strain(s): 228229 
Hirabaru, C., Izumo,A., Fujiwara, S., Tadokoro, Y., Shimonaga, T., Konishi, M., Yoshida, M., Fujita, N., Nakamura, Y., Yoshida, M., Kuroiwa, T., Tsuzuki, M. 2010 The primitive rhodophyte Cyanidioschyzon merolae contains a semiamylopectin-type, but not an amylose-type, α-glucan. Plant Cell Physiol., 51, 682-693.
Keywords: Amylose; Cyanidioschyzon; Floridean starch; Glycogen; Starch synthase; Semiamylopectin
Strain(s): 551 
PubMed: 20385610
DOI: 10.1093/pcp/pcq046
Hirabayashi, R., Imamura, N. 2003 Action mechanism of a selective anti-cyanobacterial compound, argimicin A. J. Antibiotics, 56, 154-159.
Strain(s): 414581102204230298592 
PubMed: 12715875
DOI: 10.7164/antibiotics.56.154
Hirai, A., Nishimura, T., Iwamura, T. 1979 Synthetic rates of chloroplast and cytoplasmic ribosomal ribonucleic acids during the cell cycle of Chlorella. Plant Cell Physiol., 20, 93-102.
Keywords: cell cycle; Chlorella; chloroplast rRNA; cytoplasmic rRNA; RNA synthesis; radioisotopic precursor
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075810
Hiraide, R., Kawai-Toyooka, H., Hamaji, T ., Matsuzaki, R., Kawafune, K., Abe, J., Sekimoto, H., Umen, J., Nozaki, H. 2013 The evolution of male–female sexual dimorphism predates the gender-based divergence of the mating locus gene MAT3/RB. Mol. Biol. Evol., 30, 1038-1040.
Keywords: gender-based divergence; gene conversion; male–female sexual dimorphism; MAT3/RB, mating type locus; volvocine algae
Strain(s): 722733866171017111859186139854018 
PubMed: 23364323
DOI: 10.1093/molbev/mst018
Hiramatsu, K., Ideguchi, T., Yonamine, Y., Lee, S. W., Luo, Y., Hashimoto, K., Ito, T., Hase, M., Park, J.-W., Kasai, Y., Sakuma, S., Hayakawa, T., Arai, F., Hoshino, Y., Goda, K. 2019 High-throughput label-free molecular fingerprinting flow cytometry. Sci. Adv., 5, eaau0241 (article ID).
Strain(s): 481444141 
PubMed: 30746443
DOI: 10.1126/sciadv.aau0241
Hirano, H., Iguchi, M., Nishimura, T., Iwamura, T. 1986 Isolation of high molecular weight cellular DNA with a novel granulated hydroxyapatite. Agric. Biol. Chem., 50, 219-221.
Strain(s): 2170 
Hirano, H., Takeda, Y., Iwamura, T. 1986 Unique repetitive sequences of 170 bp in Chlorella. Plant Mol. Biol., 7, 311-317.
Keywords: Chlorella; HaeIII family; repetitive sequence; tandem repeat
Strain(s): 21602170 
PubMed: 24302372
DOI: 10.1007/BF00752903
Hirano, M., Mori, H., Miura, Y., Matsunaga, N., Nakamura, N., Matsunaga, T. 1990 γ-linolenic acid production by microalgae. Appl. Biochem. Biotechnol., 24/25, 183-191.
Keywords: g-linolenic acid; Spirulina platensis; green algae; lipid; marine microalgae
Strain(s): 39 
DOI: 10.1007/BF02920244
Hirano, N., Marukawa, Y., Abe, J., Hashiba, S., Ichikawa, M., Tanabe, Y., Ito, M., Nishii, I., Tsuchikane, Y., Sekimoto, H. 2015 A receptor-like kinase, related to cell wall sensor of higher plants, is required for sexual reproduction in the unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 56, 1456-1462.
Keywords: Cell wall; Charophycean alga; Closterium peracerosum–strigosum–littorale complex; CrRLK1L-1; Receptor-like kinase; Sexual reproduction
Strain(s): 6768 
PubMed: 25941232
DOI: 10.1093/pcp/pcv065
Hirano, T., Masho, R., Koizumi, D., Tabata, S., Suzuki, K., Sakabe, M., Nakano, Y., Sato, N., Sudo, R. 2006 Ecotoxicity testing of bioremediation agents for shoreline oil-spill clean up. Jpn. J. Environ. Toxicol., 9, 115-131.
Keywords: ecotoxicity; bioremediation; oil-spill; acute toxicity; marine organisms
Strain(s): 324 
DOI: 10.11403/jset.9.115
Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
Strain(s): 2202220722122242 
PubMed: 27688324
DOI: 10.1128/genomeA.01070-16
Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N. 2017 Characterization of phosphoethanolamine-N-methyltransferases in green algae. Biochem. Biophys. Res. Commun., 488, 141-146.
Keywords: Green algal evolution; Chlamydomonas; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase
Strain(s): 22022207221222352242 
PubMed: 2848352
DOI: 10.1016/j.bbrc.2017.05.026
Hirashima, T., Toyoshima, M., Moriyama, T., Sato, N. 2018 Evolution of the phosphatidylcholine biosynthesis pathways in green algae: Combinatorial diversity of methyltransferases. J. Mol. Evol., 86, 68-76.
Keywords: Chlamydomonas; Metabolic diversity; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase; Phospholipid-N-methyltransferase
Strain(s): 2202220722122242 
PubMed: 29330556
DOI: 10.1007/s00239-017-9826-4
Hirata, K., Phunchindawan, M., Tukamoto, J., Goda, S., Miyamoto, K. 1996 Cryopreservation of microalgae using encapsulation-dehydration. CryoLetters, 17, 321-328.
Keywords: Dunaliella tertiolecta; microalgae; cryopreservation; encapsulation-dehydration
Strain(s): 8192224273244242375396422437 
Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K. 2017 Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii. Acta Crystallogr. F-Struct. Biol., F73, 86-89.
Keywords: D-threonine aldolase; Chlamydomonas reinhardtii; D-amino acids; crystallization
Strain(s): 2237 
PubMed: 28177318
DOI: 10.1107/S2053230X1602063X
Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K. 2017 Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii. Phytochemistry, 135, 18-23.
Keywords: Chlamydomonas reinhardtii; Chlamydomonadaceae; Green alga; Enzyme characterization; d-Amino acid; d-Threonine aldolase; Pyridoxal 5’-phosphate
Strain(s): 2237 
PubMed: 28038776
DOI: 10.1016/j.phytochem.2016.12.012
Hiroishi, S., Nakai, R., Seto, H., Yoshida, T., Imai, I. 2002 Identification of Heterocapsa circularisquama by means of antibody. Fish. Sci., 68, Suppl., 627-628.
Keywords: identification; Heterocapsa; dinoflagellate; antibody
Strain(s): 7235472473 
DOI: 10.2331/fishsci.68.sup1_627
Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1988 A new method for identification of inter- and intra-species of the red tide algae Chattonella antiqua and Chattonella marina (Raphidophyceae) by means of monoclonal antibodies. J. Phycol., 24, 442-444.
Keywords: Chattonella; identification; immunofluorescence; inter-species; intra-species; method; monoclonal antibody; red tide
Strain(s): 121483848586113114115116118121 
DOI: 10.1111/j.1529-8817.1988.tb04488.x
Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1989 A new method for inter- and intra-species identification of red tide algae Chattonella antiqua and Chattonella marina by means of monoclonal antibodies. In Red Tides: Biology, Environmental Science, and Toxicology, Eds. by Okaichi, T., Anderson, D. M. & Nemoto, T., Elsevier Science Pub., New York, pp. 299-300.
Strain(s): 8586118121 
Hirokawa, T., Hata, M., Takeda, H. 1982 Correlation between the starch level and the rate of starch synthesis during the developmental cycle of Chlorella ellipsoidea. Plant Cell Physiol., 23, 813-820.
Keywords: 14C-fixation; cell cycle; Chlorella ellipsoidea; photosynthesis; starch accumulation; starch synthesis; synchronous culture
Strain(s): 2170 
Hirokawa, T., Miyachi, S., Tamiya, H. 1958 Effect of hydrogen peroxide on the light-induced capacity of carbon dioxide-fixation in green algae. J. Biochem., 45, 1005-1010.
Strain(s): 2170 
Hirokawa, T., Takeda, H. 1980 Automatic analysing system for the liquid chromatography. J. Gen. Edu. Dept., Niigata Univ., 10, 97-106.
Strain(s): 2262170 
Hiroki, M., Shimizu, A., Li, R., Watanabe, M., Watanabe, M. M. 1998 Development of a database system useful for identification of Anabaena spp. (Cyanobacteria). Phycol. Res., 46, Suppl., 85-93.
Keywords: Anabaena; computer; cyanobacteria; database system; identification; morphology
Strain(s): 810819826835 
DOI: 10.1111/j.1440-1835.1998.tb00276.x
Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY. 2017 Acidophilic green algal genome provides insights into adaptation to an acidic environment. Proc. Natl. Acad. Sci. U. S. A., 114, E8304–E8313.
Keywords: acidic environment; acidophilic alga; comparative genomics; comparative transcriptomics; environmental adaptation
Strain(s): 2499 
PubMed: 28893987
DOI: 10.1073/pnas.1707072114
Hirooka, S., Tomita, R., Fujiwara, T., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., Miyagishima, S. 2020 Efficient open cultivation of cyanidialean red algae in acidified seawater. Sci Rep, 10, 13794 (article ID).
Strain(s): 21373377 
PubMed: 32839467
DOI: 10.1038/s41598-020-70398-z
Hirooka, T., Akiyama, Y., Tsuji, N., Nakamura, T., Nagase, H., Hirata, K., Miyamoto, K. 2003 Removal of hazardous phenols by microalgae under photoautotrophic conditions. J. Biosci. Bioeng., 95, 200-203.
Keywords: green algae; cyanobacteria; nitrophenol; chlorophenol; bisphenol A; photoautotrophic conditions
Strain(s): 192344422437 
PubMed: 16233393
DOI: 10.1016/S1389-1723(03)80130-5
Hirosawa, T. 1984 Near-UV and blue light effects in cyanobacteria. In Blue Light Effects in Biological Systems, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 39-47.
Strain(s): 193720933277 
Hirose, M., Reimer, J. D., Hidaka, M., Suda, S. 2008 Phylogenetic analyses of potentially free-living Symbiodinium spp. Isolated from coral reef sand in Okinawa, Japan. Mar. Biol., 155, 105-112.
Strain(s): 263826392640264126422643 
DOI: 10.1007/s00227-008-1011-2
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.
Keywords: Cyanobacteria; Genome; Photosensor; Thermophile
Strain(s): 3754 
PubMed: 26784989
DOI: 10.1016/j.jbiotec.2016.01.011
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Leptolyngbya sp. NIES-3755. GenomeA, 4, e00090-16 (article ID).
Strain(s): 3755 
PubMed: 26988037
DOI: 10.1128/genomeA.00090-16
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52.
Strain(s): 3756 
PubMed: 26656223
DOI: 10.1016/j.jbiotec.2015.12.002
Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015a Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3708, which performs type II complementary chromatic acclimation. GenomeA, 3, e00357-15 (article ID).
Strain(s): 3708 
PubMed: 25953174
DOI: 10.1128/genomeA.00357-15
Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015b Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3709, which harbors a phycoerythrin-rich phycobilisome. GenomeA, 3, e00385-15 (article ID).
Strain(s): 3709 
PubMed: 25931605
DOI: 10.1128/genomeA.00385-15
Hirose, Y., Misawa, N., Yonekawa, C., Nagao, N., Watanabe, M., Ikeuchi, M., Eki, T. 2017 Characterization of the genuine type 2 chromatic acclimation in the two Geminocystis cyanobacteria. DNA Res., 24, 387-396.
Keywords: Cyanobacteria; chromatic acclimation; phycobilisome; cyanobacteriochrome
Strain(s): 37083709 
PubMed: 28338901
DOI: 10.1093/dnares/dsx011
Hiwatari, T., Kasai, F., Watanabe, M. M., Nei, T. 1984 Cryopreservation of Scenedesmus acutus and Pediastrum duplex in liquid nitrogen - Survival and growth after freezing. Jpn. J. Freez. Dry., 30, 27-31 (in Japanese with English title).
Strain(s): 95213 
Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S. 2012 Detection and identification of potentially toxic cyanobacteria: Ubiquitous distribution of Microcystis aeruginosa and Cuspidothrix issatschenkoi in Japanese lakes. Harmful Algae, 16, 49-57.
Keywords: Anatoxin-a; Automated rRNA intergenic spacer analysis (ARISA); Cuspidothrix issatschenkoi; Cyanotoxin; Microcystin; Microcystis aeruginosa
Strain(s): 304077102111230512843905928932937991164516691698172919502116 
DOI: 10.1016/j.hal.2012.01.003
Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S.-I. 2011 Temporal variation in cyanobacteria species composition and photosynthetic activity in experimentally induced blooms. J. Plankton Res., 33, 1410-1416.
Keywords: cyanobacterial bloom; DCMU [3'-(3,4-dichlorophenyl)-1',1'-dimethyl urea]; maximum quantum yieldMicrocystis aeruginosa
Strain(s): 843 
DOI: 10.1093/plankt/fbr040
Hoef-Emden, K. 2012 Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS One, 7, e43652 (article ID).
Strain(s): 27470670871171271371410041370 
PubMed: 22970104
DOI: 10.1371/journal.pone.0043652
Hoef-Emden, K. 2014 Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist, 165, 123-143.
Keywords: Chroomonas; contractile vacuole; cryptomonads; floridoside; osmolarity; osmoregulation; osmotolerance; phylogeny
Strain(s): 7087127137141004 
PubMed: 24568876
DOI: 10.1016/j.protis.2014.01.001
Hoef-Emden, K. 2018 Revision of the genus Chroomonas HANSGIRG: The benefits of DNA-containing specimens. Protist, 169, 662-681.
Keywords: Chroomonas; novel species; phylogeny; ancient DNA; revision; Cryptophyceae
Strain(s): 7087121004 
PubMed: 30125802
DOI: 10.1016/j.protis.2018.04.005
Hoef-Emden, K., Melkonian, M. 2003 Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism. Protist, 154, 371-409.
Strain(s): 274276279 
PubMed: 14658496
DOI: 10.1078/143446103322454130
Hogetsu, D., Miyachi, S. 1970 Effect of oxygen on the light-enhanced dark carbon dioxide fixation in Chlorella cells. Plant Physiol., 45, 178-182.
Strain(s): 2170 
PubMed: 16657299
DOI: 10.1104/pp.45.2.178
Hogetsu, D., Miyachi, S. 1977 Effects of CO2 concentration during growth on subsequent photosynthetic CO2 fixation. Plant Cell Physiol., 18, 347-352.
Strain(s): 2160 
Hogetsu, D., Miyachi, S. 1979 Role of carbonic anhydrase in photosynthetic CO2 fixation in Chlorella. Plant Cell Physiol., 20, 747-756.
Keywords: carbonic anhydrase; Chlorella; CO2 fixation; photosynthesis; ribulose 1,5-bisphosphate carboxylase
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a075865
Honda, D., Yokota, A., Sugiyama, J. 1999 Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J. Mol. Evol., 48, 723-739.
Keywords: cyanobacteria; Synechococcus; phylogeny; ribosomal RNA; maximum-likelihood method; neighbor-joining method; rate homo- and heterogeneous models
Strain(s): 27208510211621182119 
PubMed: 10229577
DOI: 10.1007/PL00006517
Honda, R., Boonnorat, J., Chiemchaisri, C., Chiemchaisri, w., Yamamoto, K. 2012 Carbon dioxide capture and nutrients removal utilizing treated sewage by concentrated microalgae cultivation in a membrane photobioreactor. Bioresour. Technol., 125, 59-64.
Keywords: Carbon dioxide capture; Nutrients removal; Membrane photobioreactor; Microalgae; Botryococcus braunii
Strain(s): 2199 
PubMed: 23023237
DOI: 10.1016/j.biortech.2012.08.138
Honda, R., Rukapan, W., Komura, H., Teraoka, Y., Noguchi, M., Hoek, E.M.V. 2015 Effects of membrane orientation on fouling characteristics of forward osmosis membrane in concentration of microalgae culture. Bioresour. Technol., 197, 429-433.
Keywords: Forward osmosis; Microalgae; Membrane fouling; Extracellular polymeric substances (EPS)
Strain(s): 2170 
PubMed: 26356114
DOI: 10.1016/j.biortech.2015.08.096
Honda, R., Teraokab, Y., Noguchia, M., Yang, S. 2017 Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor. J. Water Environ. Technol., 15, 1-11.
Keywords: membrane photobioreactor; microalgae; resource recovery from wastewater
Strain(s): 2170 
DOI: 10.2965/jwet.15-085
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa. Fish. Sci., 78, 375-379.
Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ
Strain(s): 298 
DOI: 10.1007/s12562-011-0442-8
Hondo, S., Takahashi, M., Osanai, T., Matsuda, M., Hasunuma, T., Tazuke, A., Nakahira, Y., Chohnan, S., Hasegawa, M., Asayama, M. 2015 Genetic engineering and metabolite profiling for overproduction of polyhydroxybutyrate in cyanobacteria. J. Biosci. Bioeng., 120, 510-517.
Keywords: Acetyl-CoA; Cyanobacteria; Metabolite analysis; Nitrogen depletion; Polyhydroxybutyrate
Strain(s): 843 
PubMed: 26055446
DOI: 10.1016/j.jbiosc.2015.03.004
Hong, J. W., Kim, O. H., Jo, S. W., Kim, H., Jeong, M. R., Yoon, H. S. 2018 Characterization of alkane-producing Nostoc sp. isolated from a summer bloom for biofuel potential. J. Biobased Mater. Bioenergy, 12, 244-251.
Keywords: Alkane-Producing Genes; Biofuel; Cyanobacteria; Heptadecane; Potential; Feedstoc
Strain(s): 212109 
DOI: 10.1166/jbmb.2018.1757
Hong, M. E., Choi, S. P., Park, Y. I., Kim, Y. K., Chang, W. S., Kim, B. W., Sim, S. J. 2012 Astaxanthin production by a highly photosensitive Haematococcus mutant. Process Biochem., 47, 1972–1979.
Keywords: Haematococcus pluvialis; Astaxanthin; Photo-inducible mutant; Photo-sensitivity
Strain(s): 144 
DOI: 10.1016/j.procbio.2012.07.007
Hong, M. E.1, Choi, H. I., Kwak, H. S., Hwang, S. W., Sung, Y. J., Chang, W. S., Sim, S. J. 2018 Rapid selection of astaxanthin-hyperproducing Haematococcus mutant via azide-based colorimetric assay combined with oil-based astaxanthin extraction. Bioresour. Technol., 267, 175-181.
Keywords: Haematococcus pluvialis; Autotrophic astaxanthin production; High-throughput screening; Azide-based colorimetric assay; Oil-based astaxanthin extraction method
Strain(s): 144 
PubMed: 30014996
DOI: 10.1016/j.biortech.2018.07.033
Hong, M.-E., Choi, Y. Y., Sim, S. J. 2016 Effect of red cyst cell inoculation and iron (II) supplementation on autotrophic astaxanthin production by Haematococcus pluvialis under outdoor summer conditions. J. Biotechnol., 218, 25–33.
Keywords: Haematococcus pluvialis; Photoautotrophic culture; Astaxanthin; Summer outdoor conditions; Red cyst cell (aplanospore) inoculation method; Iron(Fe2+) supplementation method
Strain(s): 144 
PubMed: 26630998
DOI: 10.1016/j.jbiotec.2015.11.019
Honjo, M., Matsui, K., Ueki, M., Nakamura, R., Fuhrman, J. A., Kawabata, Z. 2006 Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond. J. Plankton Res., 28, 407-412.
Strain(s): 298 
DOI: 10.1093/plankt/fbi128
Hoppenrath, M., Yubuki, N., Stern, R., Leander, B. S. 2017 Ultrastructure and molecular phylogenetic position of a new marine sand-dwellin dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae). Eur. J. Phycol., 52, 208-224.
Keywords: Clone libraries; depth gradient; microscopy; NGS library; oxyphotobacteriav; stromatolites; taxonomy
Strain(s): 1367 
DOI: 10.1080/09670262.2016.1274788
Hori, K. Maruyama, F., Fujisawa, T., Togashi, T., Yamamoto, N., Seo, M., Sato, S., Yamada, T., Mori, H., Tajima, N., Moriyama, T., Ikeuchi, M., Watanabe, M., Wada, H., Kobayashi, K., Saito, M., Masuda, T., Sasaki-Sekimoto, Y., Mashiguchi, K., Awai, K., Shimojima, M., Masuda, S., Iwai, M., Nobusawa, T., Narise, T., Kondo, S., Saito, H., Sato, R., Murakawa, M., Ihara, Y., Oshima-Yamada, Y., Ohtaka, K., Satoh, M., Sonobe, K., Ishii, M., Ohtani, R., Kanamori-Sato, M., Honoki, R., Miyazaki, D., Mochizuki, H., Umetsu, J., Higashi, K., Shibata, D., Kamiya, Y., Sato, N., Nakamura, Y., Tabata, S., Ida, S., Kurokawa, K., Ohta, H. 2014 Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat. Commun., 5, 3978 (article ID).
Strain(s): 2285 
PubMed: 24865297
DOI: 10.1038/ncomms4978
Hori, S., Sekimoto, H., Abe, J. 2012 Properties of cell surface carbohydrates in sexual reproduction of the Closterium peracerosum–strigosum–littorale complex (Zygnematophyceae, Charophyta). Phycol. Res., 60, 254-260.
Keywords: cell-cell recognition; Closterium; ConcanavalinA; conjugation; lectin; Lycopersicon esculentum lectin; sexual reproduction
Strain(s): 6768 
DOI: 10.1111/j.1440-1835.2012.00656.x
Horiguchi, T. 1996 Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol. Res., 44, 143-150.
Keywords: Haramonas dimorpha gen et sp. nov.; mangrove; Raphidophyceae; taxonomy; tubular invagination; ultrastructure
Strain(s): 716 
DOI: 10.1111/j.1440-1835.1996.tb00043.x
Hoshina, R., Fujiwara, Y. 2013 Molecular characterization of Chlorella cultures of the National Institute for Environmental Studies culture collection with description of Micractinium inermum sp. nov., Didymogenes sphaerica sp. nov., Didymogenes soliella sp. nov., (Chlorellaceae, Trebouxiophyceae). Phycol. Res., 61, 124-132.
Keywords: Chlorella; Didymogenes; group 1 intron; internal transcribed spacer 2; Micractinium; species concept
Strain(s): 2167217121732330 
DOI: 10.1111/pre.12010
Hoshina, R., Hayakawa, M. M., Kobayashi, M., Higuchi, R., Suzaki, T. 2020 Pediludiella daitoensis gen. et sp. nov. (Scenedesmaceae, Chlorophyceae), a large coccoid green alga isolated from a Loxodes ciliate. Sci Rep, 10, 628 (article ID).
Strain(s): 4031 
PubMed: 31959793
DOI: 10.1038/s41598-020-57423-x
Hoshina, R., Imamura, N. 2008 Eu-Chlorella large subunit rDNA sequences and group I introns in ribosomal DNA of the paramecian symbiotic alga NC64A. Phycol. Res., 56, 21-32.
Keywords: Chlorella vulgaris; group I intron; intron phylogeny; intron transposition; large subunit ribosomal DNA; NC64A
Strain(s): 227 
DOI: 10.1111/j.1440-1835.2008.00481.x
Hoshina, R., Imamura, N. 2009 Phylogenetically close group I introns with different positions among Paramecium bursaria photobionts imply a primitive stage of intron diversification. Mol. Biol. Evol., 26, 1309-1319.
Keywords: degenerative homing; intron diversification; intron transposition; Paramecium bursaria symbiotic algae; reverse splicing
Strain(s): 2541 
PubMed: 19279084
DOI: 10.1093/molbev/msp044
Hoshina, R., Iwataki, M., Imamura, N. 2010 Chlorella variabilis and Micractinium reisseri sp. nov. (Chlorellaceae, Trebouxiophyceae): Redescription of the endosymbiotic green algae of Paramecium bursaria (Peniculia, Oligohymenophorea) in the 120th year. Phycol. Res., 58, 188-201.
Keywords: Chlorella variabilis; ITS2; Micractinium reisseri; Paramecium bursaria; species concept
Strain(s): 25402542 
DOI: 10.1111/j.1440-1835.2010.00579.x
Hoshina, R., Kamako, S.-I., Imamura, N. 2004 Phylogenetic position of endosymbiotic green algae in Paramecium bursaria Ehrenberg from Japan. Plant Biol., 6, 447-453.
Keywords: 18S rDNA; Chlorella; endosymbiont; ITS; Paramecium bursaria; phylogeny
Strain(s): 25402541 
DOI: 10.1055/s-2004-820888
Hoshina, R., Kato, Y., Kamako, S., Imamura, N. 2005 Genetic evidence of "American" and "European" type symbiotic algae of Paramecium bursaria Ehrenberg. Plant Biol., 7, 526-532.
Keywords: 18S rDNA; "American"; "European"; Chlorella; ITS; Paramecium bursaria; Phylogeny
Strain(s): 25402541 
DOI: 10.1055/s-2005-865912
Hoshina, R., Kobayashi, M., Suzaki, T., Kusuoka, Y. 2018 Brandtia ciliaticola gen. et sp. nov. (Chlorellaceae, Trebouxiophyceae) a common symbiotic green coccoid of various ciliate species. Phycol. Res., 66, 76-81.
Keywords: Chlorella; genus definition; rRNA structure
Strain(s): 403240334034 
DOI: 10.1111/pre.12194
Hoshina, R., Tsukii, Y., Harumoto, T., Suzaki, T. 2021 Characterization of a green Stentor with symbiotic algae growing in an extremely oligotrophic environment and storing large amounts of starch granules in its cytoplasm. Sci Rep, 11, 2865 (article ID).
Strain(s): 3374 
PubMed: 33536497
DOI: 10.1038/s41598-021-82416-9
Hosoi-Tanabe, S., Honda, D., Fukaya, S., Otake, I., Inagaki, Y., Sako, Y. 2007 Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar rephidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycol. Res., 55, 185-192.
Keywords: Chatonella verruculosa; Dictyochophyceae; flagellar apparatus; harmful algal bloom; phylogenetic analysis; Pseudochattonella verruculosa; Raphidophyceae
Strain(s): 670 
DOI: 10.1111/j.1440-1835.2007.00461.x
Hosoi-Tanabe, S., Otake, I., Sako, Y. 2006 Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C. marina, C. ovata, and C. verruculosa (Raphidophyceae) based on the rRNA gene family. Fish. Sci., 72, 1200-1208.
Keywords: Chattonella; genetic homogeneity; phylogenetic analysis; Raphidophyceae; rRNA gene family
Strain(s): 1586121558559603670 
DOI: 10.1111/j.1444-2906.2006.01277.x
Hosoi-Tanabe, S., Sako, Y. 2005 Species-specific detection and quantification of toxic marine Dinoflagellates Alexandrium tamarense and A. catenella by reai-time PCR assay. Mar. Biotechnol., 7, 506-514.
Keywords: toxic dinoflagellate; — Alexandrium; paralytic shellfish poisoning (PSP); real-time PCR; species-specific identification; quantification
Strain(s): 1712293331559603670 
PubMed: 16007374
DOI: 10.1007/s10126-004-4128-4
Hosokawa, Y., Miki-Noumura, T. 1987 Bending motion of Chlamydomonas axonemes after extrusion of central-pair microtubules. J. Cell Biol., 105, 1297-1301.
Strain(s): 2239 
Hosomi, M., Sudo, R. 1979 Studies on the effects of sediments on algal growth - Algal growth potential of sediments. Res. Rep. Natl. Inst. Environ. Stud., No. 6, 115-121 (in Japanese with English summary).
Strain(s): 35 
Hosoya, R., Hamana, K., Isobe, M., Yokota, A. 2005 Polyamine distribution profiles within Cyanobacteria. Microbiol. Cult. Coll., 21, 3-8.
Keywords: cyanobacteria; homospermidine; polyamine; spermidine
Strain(s): 19212228303437414445507378798081204208510512515592593610843846847209320962098210021022107210821182119212321242125212621282129213121323259327532763277 
Houdai, T., Matsuoka, S., Matsumori, N., Murata, M. 2004 Membrane-permeabilizing activities of amphidinol 3, polyene-polyhydroxy antifungal from a marine dinoflagellate. Biochem. Biophys. Acta, 1667, 91-100.
Keywords: amphidinol; Amphidinium klebsii; amphotericin B
Strain(s): 613 
PubMed: 15533309
DOI: 10.1016/j.bbamem.2004.09.002
Houdai, T., Matsuoka, S., Morsy, N., Matsumori, N., Satake, M., Murata, M. 2005 Hairpin conformation of amphidinols possibly accounting for potent membrane permeabilizing activities. Tetrahedron, 61, 2795-2802.
Keywords: amphidinol membrane-permeabilizaion
Strain(s): 613 
DOI: 10.1016/j.tet.2005.01.069
Houdai, T., Matsuoka, S., Murata, M., Satake, M., Ota, S., Oshima, Y., Rhodes, L. L. 2001 Acetate labeling patterns of dinoflagellate polyketides, amphidinols 2, 3 and 4. Tetrahedron, 57, 5551-5555.
Keywords: dinoflagellate; polyketides; biosynthesis; amphidinol; Amphidinium; isotopic labelling
Strain(s): 613 
DOI: 10.1016/S0040-4020(01)00481-1
Houndan, A., Billard, C., Marie, D., Not, F., Sáez, A. G., Young, J. R., Probert, I. 2003 Holococcolithophore-heterococcolithophore (Haptophyta) life cycles: flow cytometric analysis of relative ploidy levels. Systematics and Biodiversity, 4, 453-465.
Keywords: Coccolithophore; haplo-diploid; Haptophyta; heterococcolith; holococcolith; life cycle; microalgae; ploidy
Strain(s): 26942697 
DOI: 10.1017/S1477200003001270
Hovde, B. T., Deodato, C. R., Andersen, R. A., Starkenburg, S. R., Barlow, S.B., Cattolico, R.A. 2019 Chrysochromulina: Genomic assessment and taxonomic diagnosis of the type species for an oleaginous algal clade. Algal Res., 37, 307-319.
Keywords: Haptophyta; Chrysochromulina genome; nad evolution; FtsZ phylogeny; Meiosis; Taxon diagnosis
Strain(s): 562 
DOI: 10.1016/j.algal.2018.11.023
Howe, A. T., Bass, D., Vickerman, K., Chao, E. E., Cavalier-Smith, T. 2009 Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist, 160, 159-189.
Keywords: Glissomonadida; Sandonidae; Allapsidae; Bodomorphidae; Heteromita; phylogeny
Strain(s): 241424152417241824192421242224232424242524262427242824292430 
PubMed: 19324594
DOI: 10.1016/j.protis.2008.11.007
Htet, AN., Noguchi, M., Ninomiya, K., Tsuge, Y., Kuroda, K., Kajita, S., Masai, E., Katayama, Y., Shikinaka, K., Otsuka, Y., Nakamura, M., Honda, R., Takahashi, K. 2018 Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid. J. Biosci. Bioeng., 125, 717-722.
Keywords: Microalgae; Chlorella emersonii; Acid hydrolysis; Fermentation; Escherichia coli; 2-pyrone 4,6-dicarboxylic acid
Strain(s): 2151 
PubMed: 29395960
DOI: 10.1016/j.jbiosc.2017.12.026
Hu, ZY., Li, YT., Sommerfeld, M., Chen, F., Hu, Q. 2008 Enhanced protection against oxidative stress in an astaxanthin-overproduction Haematococcus mutant (Chlorophyceae). Eur. J. Phycol., 43, 365-376.
Keywords: astaxanthin; carotenogenesis; flow cytometry; Haematococcus pluvialis; oxidative stress; pigment mutant
Strain(s): 144 
DOI: 10.1080/09670260802227736
Hua, C., Ludsinb, S. A., Martinc, J. F., Dittmannd, E., Lee, J. 2018 Mycosporine-like amino acids (MAAs)—producing Microcystis in Lake Erie:Development of a qPCR assay and insight into its ecology. Harmful Algae, 77, 1–10.
Keywords: Shinorine; Porphyra; UV irradiation; Sunscreen; Eutrophication; Harmful algal bloom
Strain(s): 843 
PubMed: 30005796
DOI: 10.1016/j.hal.2018.05.010
Hua, J., Lee, R.W. 2012 Factors affecting codon bias in the mitochondrial genomes of the Streptophyte Mesostigma viride and the Chlorophyte Chlamydomonas reinhardtii. J. Eucaryot. Microbiol., 59, 287-289.
Keywords: Green algae; mutation; selection; synonymous codon usage
Strain(s): 296 
PubMed: 22340021
DOI: 10.1111/j.1550-7408.2011.00613.x
Hua, JM., Smith, D. R., Borza, T., Lee, R. W. 2012 Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas. Protist, 163, 105-115.
Keywords: Chlamydomonas; genome architecture; Mesostigma; mutation rate; silent substitution rate
Strain(s): 296476 
PubMed: 21621456
DOI: 10.1016/j.protis.2011.04.003
Huang, Y., Lee, H., Lai, C. 2013 Engineering of the growth environment of microalgae with high biomass and lipid productivity. J. Nanosci. Nanotechnol., 13, 2117-2121.
Keywords: Microalgae; Cultivation Environment; Carbon Dioxide; Biomass Productivity; Lipid Productivity
Strain(s): 2199 
DOI: 10.1166/jnn.2013.6877
Huang, Y.-T., Su, C.-P. 2014 High lipid content and productivity of microalgae cultivating under elevated carbon dioxide. Int. J. Environ. Sci. Technol., 11, 703-710.
Keywords: Biodiesel; Chlorella; Global warming; Light intensity
Strain(s): 2173 
DOI: 10.1007/s13762-013-0251-y
Huang, Y-T., Lai, C-W., Wu, B-W., Lin, K-S., Wu, J.C.S., Md Shahriar A Hossain, Yamauchi, Y., Wu, C.-W. 2017 Advances in bioconversion of microalgae with high biomass and lipid productivity. J. Taiwan Inst. Chem. Eng., 79, 37-42.
Keywords: Bioconversion; Fatty acid; methyl esters; Illumination; Microalgae
Strain(s): 2199 
DOI: 10.1016/j.jtice.2017.05.026
Hunsperger, H. M., Randhawa, T., Cattolico, R. A. 2015 Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol. Biol., 15, 16 (article ID).
Keywords: Chlorophyll synthesis; Horizontal gene transfer; Endosymbiotic gene transfer; Gene duplication; Algae; Protochlorophyllide
Strain(s): 29336048413632140 
PubMed: 25887237
DOI: 10.1186/s12862-015-0286-4
Huss, V. A. R., Wein, K. H., Kessler, E. 1988 Deoxyribonucleic acid reassociation in the taxonomy of the genus Chlorella. Arch. Mikrobiol., 150, 509-511.
Strain(s): 2163 
Hwang, S. W., Choi, H. I., Sim, S. J. 2019 Acidic cultivation of Haematococcus pluvialis for improved astaxanthin production in the presence of a lethal fungus. Bioresour. Technol., 278, 138-144.
Keywords: Haematococcus pluvialis; Paraphysoderma sedebokerensis; Acidic cultivation; Stress relief; Astaxant
Strain(s): 144 
PubMed: 30685617
DOI: 10.1016/j.biortech.2019.01.080
Ichimura, T. 1971 Sexual cell division and conjugation-papilla formation in sexual reproduction of Closterium strigosum. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, pp. 208-214.
Strain(s): 66262 
Ichimura, T. 1973 Culture of microalgae (6). Iden, 27, 97-101 (in Japanese).
Strain(s): 66173175179180181183198262338450 
Ichimura, T. 1973 The life cycle and its control in some species of Closterium, with special reference to the biological species problems. Thesis D. Sci., University of Tokyo, 69 pp., 11 tables, 40 figs.
Strain(s): 666768124125127174175176177179180181182183185198202262337338450451 
Ichimura, T. 1981 Mating types and reproductive isolation in Closterium ehrenbergii Meneghini. Bot. Mag. Tokyo, 94, 325-334.
Keywords: biosystematic study; Closterium ehrenbergii; mating group; mating type; reproductive isolation
Strain(s): 228229 
DOI: 10.1007/BF02493393
Ichimura, T. 1983 Hybrid inviability and predominant survival of mating type minus progeny in laboratory crosses between two closely related mating groups of Closterium ehrenbergii. Evolution, 37, 252-260.
Strain(s): 228229 
Ichimura, T. 1997 Chlamydomonas pulsatilla Wollenweber from a supra-littoral rockpool on a small island offshore the city of Muroran, Hokkaido, Japan. Algol. Stud., 85, 23-29.
Keywords: Chlamydomonas pulsatilla; euryhaline species; acetate; nutrition; supra-littoral rockpool
Strain(s): 122 
Ichimura, T., Itoh, T. 1977 17. Preservation methods of microalgae (I) [17. Bisaisôrui no hozonhô (I)]. In Preservation methods of microorganisms [Biseibutsu Hozonhô], Ed. by Nei, T., University of Tokyo Press, Tokyo, pp. 355-373 (in Japanese).
Strain(s): 19212223242728303132333436373839404144454647484950122123127131144152173175179180181182183185198200203206217226227241266267268271295309310334338379436448450455527 
Ichimura, T., Kasai, F. 1984 Post-zygotic isolation between allopatric mating groups of Closterium ehrenbergii Meneghini (Conjugato-phyceae). Phycologia, 23, 77-85.
Strain(s): 228229 
DOI: 10.2216/i0031-8884-23-1-77.1
Ichimura, T., Kasai, F. 1984 Time lapse analyses of sexual reproduction in Closterium ehrenbergii (Conjugatophyceae). J. Phycol., 20, 258-265.
Keywords: Closterium ehrenbergii; conjugation; desmids; mating type; sexual reproduction
Strain(s): 228229 
DOI: 10.1111/j.0022-3646.1984.00258.x
Ichimura, T., Kasai, F. 1985 Studies on the life cycle of Spinoclosterium cuspidatum (Bailey) Hirano (Conjugatophyceae). Phycologia, 24, 205-216.
Strain(s): 325 
DOI: 10.2216/i0031-8884-24-2-205.1
Ichimura, T., Kasai, F. 1987 Time-lapse analyses of sexual isolation between two closely related mating groups of the Closterium ehrenbergii species complex (Chlorophyta). J. Phycol., 23, 523-534.
Keywords: Closterium ehrenbergii; desmids; mating group; multiple-choice mating; no-choice mating; sexual interactions; sexual isolation; time-lapse photomicrography
Strain(s): 228229 
DOI: 10.1111/j.1529-8817.1987.tb04201.x
Ichimura, T., Kasai, F. 1989 Life cycles of homothallic and heterothallic clones of Triploceras gracile Bailey (Desmidiaceae, Chlorophyta). Phycologia, 28, 212-221.
Strain(s): 789790791792793794795796 
DOI: 10.2216/i0031-8884-28-2-212.1
Ichimura, T., Watanabe, M. 1974 The Closterium calosporum complex from the Ryukyu Islands - Variation and taxonomical problems. Mem. Natn. Sci. Mus. Tokyo, 7, 89-102, pls. 13-14.
Strain(s): 163164165168186187194271339340341 
Ichimura, T., Watanabe, M. M. 1977 An axenic clone of Microcystis aeruginosa Kutz. emend. Elenkin from Lake Kasumigaura. Bull. Jpn. Soc. Phycol., 25, 177-181.
Strain(s): 44 
Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J., 10, 2419-2434.
Strain(s): 25652682336933703371369937003701 
PubMed: 27003244
DOI: 10.1038/ismej.2016.38
Ichinomiya, M., Nakamachi, M., Shimizu, Y., Kuwata, A. 2013 Growth characteristics and vertical distribution of Triparma laevis (Parmales) during summer in the Oyashio region, western North Pacific. Aquat. Microb. Ecol., 68, 107-116.
Keywords: Triparma laevis; Parmales; Vertical distribution; Growth characteristics; Oyashio region
Strain(s): 2565 
DOI: 10.3354/ame01606
Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A. 2011 Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J. Phycol., 47, 144-151.
Keywords: Bolidophyceae; diatoms; heterokonts; Parmales; PDMPO; phylogeny; stramenopiles; Triparma laevis
Strain(s): 25652682 
PubMed: 27021720
DOI: 10.1111/j.1529-8817.2010.00926.x
Ichinose, T. M., Iwane, A. H. 2018 Cytological analyses by advanced electron microscopy. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 129-151.
Keywords: FIB-SEM; SBF-SEM; EM-tomography; EM (electron microscopy); Block-face imaging; Cryo-TEM; Cryo-TEM tomography; Cyanidioschyzon merolae; Physical fixation
Strain(s): 1804 
DOI: 10.1007/978-981-10-6101-1_9
Iehara, M. 1990 Kinetic analysis of the growth of Chlorella vulgaris. Biotech. Bioeng., 36, 198-206.
Strain(s): 227 
PubMed: 18595068
DOI: 10.1002/bit.260360212
Iida, H., Nishii, I., Inouye, I. 2011 Embryogenesis and cell positioning in Platydorina caudata (Volvocaceae, Chlorophyta). Phycologia, 50, 530-540.
Keywords: Volvocaceae; inversion; intercalation; cytoplasmic bridge; stalk; colony formation
Strain(s): 728729 
DOI: 10.2216/10-80.1
Iida, H., Ota, S., Inouye, I. 2013 Cleavage, incomplete inversion, and cytoplasmic bridges in Gonium pectorale (Volvocales, Chlorophyta). J. Plant Res., 126, 699-707.
Keywords: Cytoplasmic bridge; Gonium; Inversion; Multicellularity; Transmission electron microscopy; Volvocales
Strain(s): 645 
PubMed: 23455615
DOI: 10.1007/s10265-013-0553-7
Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238.
Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model
Strain(s): 115548670716 
PubMed: 17591448
DOI: 10.1016/j.ympev.2007.05.003
Iino, M., Hashimoto, H. 2003 Intermediate features of cyanelle division of Cyanophora paradoxa (Glaucocystophyta) between cyanobacterial and plastid division. J. Phycol., 39, 561-569.
Keywords: chloroplast division; cyanelle; Cyanophora paradoxa; endosymbiosis; Glaucocystophyta; peptidoglycan; plastid dividing-ring; plastid division; plastid envelope
Strain(s): 547 
DOI: 10.1046/j.1529-8817.2003.02132.x
Ikegami, S., Imai, I., Kato, J., Ohtake, H. 1995 Chemotaxis toward inorganic phosphate in the red tide alga Chattonella antiqua. J. Plankton Res., 17, 1587-1591.
Strain(s): 1 
DOI: 10.1093/plankt/17.7.1587
Ikehara, T., Kuniyoshi, K., Yamaguchi, H., Tanabe, Y., Sano, T., Yoshimoto, M., Oshiro, N., Nakashima, S., Yasumoto-Hirose, M. 2019 First report of Microcystis strains producing MC-FR and -WR toxins in Japan. Toxins, 11, 521 (article ID).
Keywords: Cyanobacteria; Microcystis; microcystins; environmental water; liquid chromatographymass spectrometry; protein phosphatase 2A inhibition assay
Strain(s): 43444345 
PubMed: 31505765
DOI: 10.3390/toxins11090521
Ikushima, T. 1975 Action of furylfuramide (AF-2) on chloroplasts of Euglena gracilis. Annu. Rep. Res. Reactor Inst. Kyoto Univ., 8, 83-85.
Strain(s): 48 
Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of aquatic humic substances on the growth of the cyanobacterium Microcystis aeruginosa. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 22, 555-560 (in Japanese with English summary).
Keywords: aquatic humic substances; Microcystis aeruginosa; iron limitation; siderophore; Lake Kasumigaura
Strain(s): 98 
Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of iron limitation and aquatic humic substances on the growth of Microcystis aeruginosa. Can. J. Fish. Aquat. Sci., 56, 1929-1937.
Strain(s): 98 
DOI: 10.1139/f99-131
Imai, I., Fujimaru, D., Nishigaki, T. 2002 Co-culture of fish with macroalgae and associated bacteria: A possible mitigation strategy for noxious red tides in enclosed coastal sea. Fish. Sci., 68, 493-496.
Keywords: red tide; mitigation; algicidal bacteria; macroalgae; co-culture of fish and macroalgae
Strain(s): 1 
DOI: 10.2331/fishsci.68.sup1_493
Imai, I., Hatano, M., Naito, K. 2004 Development of a chemically defined artificial medium for marine red tide-causing raphidophycean flagellates. Plankton Biol. Ecol., 95, 95-102.
Keywords: Chattonella; Fibrocapsa; artificial media; molybdenum; iodine
Strain(s): 1 
Imai, I., Ishida, Y., Hata, Y. 1993 Killing of marine phytoplankton by a gliding bacterium Cytophaga sp., isolated from the coastal sea of Japan. Mar. Biol., 116, 527-532.
Strain(s): 1 
DOI: 10.1007/BF00355470
Imai, I., Ishida, Y., Sakaguchi, K., Hata, Y. 1995 Algicidal marine bacteria isolated from northern Hiroshima Bay, Japan. Fish. Sci., 61, 628-636.
Keywords: algicidal bacteria; red tide; Chattonella; Alteromonas
Strain(s): 1 
DOI: 10.2331/fishsci.61.628
Imai, I., Ishida, Y., Sawayama, S., Hata, Y. 1991 Isolation of a marine gliding bacterium that kills Chattonella antiqua (Raphidophyceae). Nippon Suisan Gakkaishi, 57, 1409.
Strain(s): 1 
Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Detection and enumeration of microorganisms that are lethal to harmful phytoplankton in coastal waters. Plankton Biol. Ecol., 45, 19-29.
Keywords: red tide; Chattonella; Heterosigma; killer bacteria; viruses
Strain(s): 1 
Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Relationships between dynamics of red tide-causing raphidophycean flagellates and algicidal micro-organisms in the coastal sea of Japan. Phycol. Res., 46, 139-146.
Keywords: algicidal bacteria; Chattonella; Heterosigma; Raphidophyceae; red tide; virus
Strain(s): 1 
DOI: 10.1111/j.1440-1835.1998.tb00106.x
Imai, I., Nakagiri, S., Nagai, K., Nagasaki, K., Itakura, S., Yamaguchi, M. 1998 Fluctuations of algicidal microorganisms against the harmful dinoflagellate Heterocapsa circularisquama in Ago Bay, Mie Prefecture, Japan. Bull. Nansei Natl. Fish. Res. Inst., 31, 53-61 (in Japanese with English summary).
Keywords: red tide; Heterocapsa circularisquama; algicidal bacteria; viruses; Ago Bay
Strain(s): 1 
Imaizumi, M., Sekimoto, H., Noguchi, T. 2007 Induction of sex pheromone secretion and observations of the secretory pathway in the Closterium peracerosum-strigosum-littorale complex. Plant Sci., 173, 206-212.
Keywords: Closterium peracerosum-strigosum-littorale; Immunoelectron microscopy; Protoplast release-inducing protein; Sex pheromone; Sexual reproduction; Zygote formation
Strain(s): 6768 
DOI: 10.1016/j.plantsci.2007.05.002
Imamura, N., Motoike, I., Noda, M., Adachi, K., Konno, A., Fukami, H. 2000 Argimicin A, a novel anti-cyanobacterial compound produced by an algae-lysing bacterium. J. Antibiotics, 53, 1317-1319.
Strain(s): 102298 
DOI: 10.7164/antibiotics.53.1317
Imamura, N., Motoike, I., Shimada, N., Nishikori, M., Morisaki, H., Fukami, H. 2001 An efficient screening approach for anti-Microcystis compounds based on knowledge of aquatic microbial ecosystem. J. Antibiotics, 54, 582-587.
Strain(s): 102228 
PubMed: 11560377
DOI: 10.7164/antibiotics.54.582
Imamura, S., Hanaoka, M., Tanaka, K. 2008 The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I. EMBO J., 27, 2317-2327.
Strain(s): 3377 
PubMed: 18668124
DOI: 10.1038/emboj.2008.151
Imamura, S., Kanesaki, Y., Ohnuma, M., Inouye, T., Sekine, Y., Fujiwara, T., Kuroiwa, T., Tanaka, K. 2009 R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 106, 12548-12553.
Strain(s): 3377 
PubMed: 1959251
DOI: 10.1073/pnas.0902790106
Imamura, S., Nomura, Y., Takemura, T., Pancha, I., Taki, K., Toguchi, K., Tozawa, Y., Tanaka K. 2018 The checkpoint kinase TOR (target of rapamycin) regulates expression of a nuclear‐encoded chloroplast RelA‐SpoT homolog (RSH) and modulates chloroplast ribosomal RNA synthesis in a unicellular red alga. Plant J., 94, 327-339.
Keywords: RelA-SpoT homolog; ppGpp; red alga; ribosomal RNA; target of rapamycin
Strain(s): 3377 
PubMed: 29441718
DOI: 10.1111/tpj.13859
Imamura, S., Terashita, M., Ohnuma, M., Maruyama, S., Minoda, A., Weber, A. P. M., Inouye, T., Sekine, Y., Fujita, Y., Omata, T., Tanaka, K. 2010 Nitrate assimilatory genes and their transcriptional regulation in a unicellular red alga Cyanidioschyzon merolae: genetic evidence for nitrite reduction by a sulfite reductase-like enzyme. Plant Cell Physiol., 51, 707-717.
Keywords: Cyanidioschyzon merolae; Nitrate assimilation; Nitrite reductase; Nitrogen regulation; Red alga; Sulfite reductase
Strain(s): 3377 
PubMed: 20375110
DOI: 10.1093/pcp/pcq043
Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017 Application of MALDI Biotyper to cyanobacterial profiling. Rapid Commun. Mass Spectrom., 31, 325-332.
Strain(s): 738910210310711229861180880983584398910251043105810711099164216521672 
PubMed: 27862451
DOI: 10.1002/rcm.7793
Imase, M., Ohko, Y., Takeuchi, M., Hanada, S. 2013 Estimating the viability of Chlorella exposed to oxidative stresses based around photocatalysis. Int. Biodeterior. Biodegrad., 78, 1-6.
Keywords: Autofluorescence; Cell staining; Chlorella sorokiniana; Oxidative stress: TiO2 photocatalysis; Viability assay
Strain(s): 2169 
DOI: 10.1016/j.ibiod.2012.12.006
Imoto, Y., Kuroiwa, H., Yoshida, Y., Ohnuma, M., Fujiwara, T., Yoshida, M., Nishida, K., Yagisawa, F., Hirooka, S., Miyagishima, S.Y., Misumi, O., Kawano, S., Kuroiwa, T. 2013 Single-membrane-bound peroxisome division revealed by isolation of dynamin-based machinery. Proc. Nati. Acad. Sci. U. S. A., 110, 9583-9588.
Strain(s): 3377 
PubMed: 23696667
DOI: 10.1073/pnas.1303483110
Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I. 2019 Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study. Harmful Algae, 84, 139-150.
Keywords: Microcosm; Study; Chattonella; Harmful algal blooms (HAB); Seagrass; HAB ; prevention
Strain(s): 1 
PubMed: 31128798
DOI: 10.1016/j.hal.2018.12.004
Inaba, N., Watanabe, T., Sakami, T., Nishi, H., Tahara, Y., Imai, I. 2014 Temporal and spatial distribution of algicidal and growth-inhibiting bacteria in the coastal sea of southwest Japan. J. Plankton Res., 36, 388-397.
Keywords: algicidal bacteria; growth-inhibiting bacteria; particle-associated bacteria; free-living bacteria; harmful algal blooms
Strain(s): 1 
DOI: 10.1093/plankt/fbt119
Inada, Y. 1958 Stimulatory and inhibitory effect of light on the nitrate assimilation by Chlorella. J. Gen. Appl. Microbiol., 4, 153-162.
Strain(s): 2170 
DOI: 10.2323/jgam.4.153
Inagaki, Y., Ehara, M., Watanabe, K. I., Hayashi-Ishimaru, Y., Ohama, T. 1998 Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria. J. Mol. Evol., 47, 378-384.
Keywords: COXI phylogenetic tree; UGA codon; deviant genetic code; directional codon reassignment
Strain(s): 12227274 
PubMed: 9767683
DOI: 10.1007/PL00006395
Inagaki, Y., Hayashi-Ishimaru, Y., Ehara, M., Igarashi, I., Ohama, T. 1997 Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences. J. Mol. Evol., 45, 295-300.
Keywords: mitochondrial COXI gene; Dinoflagellata; Apicomplexa; Kinetoplastida; Euglenophyta; endosymbiosis; genetic code; malarian circle
Strain(s): 12381 
DOI: 10.1007/PL00006233
Inamori, Y., Ohno, Y., Kaya, K., Watanabe, M. M., Sudo, R. 1990 Studies on the removal and decomposition of Microcystis viridis toxic substance in the bio-film reactor. Jpn. J. Water Poll. Res., 13, 525-530 (in Japanese with English summary).
Keywords: Microcystis viridis; toxic substance cyanoviridin; bio-film reactor; hydraulic retention time
Strain(s): 102 
Inamura, E., Katayama, T., Taguchi, S. 2017 Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans. Plankton Benthos Res., 12, 15-24.
Keywords: mycosporine-glycine; palythene; palythine; porphyra-334; shinorine
Strain(s): 218 
DOI: 10.3800/pbr.12.15
Inoue, Y., Hata, T., Kawai, S., Okamura,H., Nishida, T. 2010 Elimination and detoxification of triclosan by manganese peroxidase from white rot fungus. J. Hazard. Mater., 180, 764-767.
Keywords: Triclosan; Bacterial growth inhibition; Algal growth inhibition; Manganese peroxidase; Ligninolytic enzymes; White rot fungi
Strain(s): 35 
PubMed: 20434837
DOI: 10.1016/j.jhazmat.2010.04.024
Inoue-Sakamoto, K., Nazifi, E., Tsuji, C., Asano, T., Nishiuchi, T., Matsugo, S., Ishihara, K., Kanesaki, Y., Yoshikawa, H., Sakamoto, T. 2018 Characterization of mycosporine-like amino acids in the cyanobacterium Nostoc verrucosum. J. Gen. Appl. Microbiol., 64, 203-211.
Keywords: antioxidant; environmental adaptation; mycosporine-like amino acid (MAA); mys genes
Strain(s): 25382539 
DOI: 10.2323/jgam.2017.12.003
Inoue-Sakamoto, K., Tanji, Y., Yamaba, M., Natsume, T., Masaura, T., Asano, T., Nishiuchi, T., Sakamoto, T. 2018 Characterization of extracellular matrix components from the desiccation-tolerant cyanobacterium Nostoc commune. J. Gen. Appl. Microbiol., 64, 15-25.
Keywords: anhydrobiosis; desiccation tolerance; extracellular polysaccharide (EPS); superoxide dismutase (SOD); water stress protein (WspA)
Strain(s): 21082538398939903991 
PubMed: 29225284
DOI: 10.2323/jgam.2017.03.001
Ioki, M., Ohkoshi, M., Nakajima, N., Nakahira-Yanaka, Y., Watanabe, M. M. 2012 Isolation of herbicide-resistant mutants of Botryococcus braunii. Bioresour. Technol., 109, 300-303.
Keywords: Botryococcus braunii; Paraquat; Methyl viologen; Basta; Glufosinate
Strain(s): 351192272302235 
PubMed: 21906932
DOI: 10.1016/j.biortech.2011.07.101
Irshad, M., Myint, A. A., Hong, M. E., Kim, J., Sim, S. J. 2019 One-pot, simultaneous cell wall disruption and complete extraction of astaxanthin from Haematococcus pluvialis at room temperature. ACS Sustain. Chem. Eng., 7, 13898-13910.
Keywords: Haematococcus pluvialis; One-pot method; Cell wall disruption; Extraction; Astaxanthin; Antioxidant activity; GRAS solvent
Strain(s): 144 
DOI: 10.1021/acssuschemeng.9b02089
Isaka, N., Kawai-Toyooka, H., Matsuzaki, R., Nakada, T., Nozaki, H. 2012 Description of two new monoecious species of Volvox sect. Volvox (Volvocaceae, Chlorophyceae), based on comparative morphology and molecular phylogeny of cultured material. J. Phycol., 48, 759-767.
Keywords: Chlorophyceae; cultures; molecular phylogeny; morphology; taxonomy; Volvocaceae; Volvox ferrisii sp. nov.; Volvox kirkiorum sp. nov.; Volvox sect. Volvox
Strain(s): 54327362737273827392740 
PubMed: 27011093
DOI: 10.1111/j.1529-8817.2012.01142.x
Iseki, M., Matsunaga, S., Murakami, A., Ohno, K., Shiga, K., Yoshida, K., Sugai, M., Takahashi, T., Hori, T., Watanabe, M. 2002 A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis. Nature, 415, 1047-1051.
Strain(s): 48 
PubMed: 11875575
DOI: 10.1038/4151047a
Ishibashi, Y., Ichiyanagi, J., Gotoh, M., Konno, H. 1993 Culture conditions and characteristics of offensive odor-producing substance in the genus Uroglena [Uroglena zoku no baiyôjôken to syûkibusshitsu tokusei]. In Proceedings of 27th Annual Meeting of Japan Society on Water Environment [Dai 27kai Nippon Mizukankyô-Gakkai Nenkaikôensyû], pp. 282-283 (in Japanese with English title).
Strain(s): 395 
Ishibashi, Y., Oikawa, E., Honda, H., Adachi, T., Nakatochi, M. 2007 Analyses of growth factors of taste and odor producing algae by a fuzzy neural network. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 44, 255-263 (in Japanese with English summary).
Keywords: musty odor; Phormidium tenue; Uroglena americana; fuzzy neural network; wind speed
Strain(s): 512 
DOI: 10.11532/proes1992.44.255
Ishida, K., Matsuda, H., Murakami, M. 1998 Four new microginins, linear peptides from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 54, 13475-13484.
Strain(s): 99299 
DOI: 10.1016/S0040-4020(98)00826-6
Ishida, K., Matsuda, H., Murakami, M. 1998 Micropeptins 88-A to 88-F, chymotrypsin inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 54, 5545-5556.
Strain(s): 88 
DOI: 10.1016/S0040-4020(98)00242-7
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Kawaguchipeptin A, a novel cyclic undecapeptide from cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 52, 9025-9030.
Strain(s): 88 
DOI: 10.1016/0040-4020(96)00452-8
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 The absolute stereochemistry of micropeptin 90. Tetrahedron Letters, 37, 9225-9226.
Strain(s): 90 
DOI: 10.1016/S0040-4039(96)02189-2
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Kawaguchipeptin B, an antibacterial cyclic undecapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 724-726.
Strain(s): 88 
DOI: 10.1021/np970146k
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Microginins 299-A and -B, leucine aminopeptidase inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-299). Tetrahedron, 53, 10281-10288.
Strain(s): 299 
DOI: 10.1016/S0040-4020(97)00684-4
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Micropeptins 478-A and -B, plasmin inhibitors from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 184-187.
Strain(s): 478 
DOI: 10.1021/np9606815
Ishida, K., Murakami, M. 2000 Kasumigamide, an antialgal peptide from the cyanobacterium Microcystis aeruginosa. J. Org. Chem., 65, 5898-5900.
Strain(s): 87439 
PubMed: 10987919
DOI: 10.1021/jo991918f
Ishida, K., Murakami, M., Matsuda, H., Yamaguchi, K. 1995 Micropeptin 90, a plasmin and trypsin inhibitor from the blue-green alga Microcystis aeruginosa (NIES-90). Tetrahedron Letters, 36, 3535-3538.
Strain(s): 90 
DOI: 10.1016/0040-4039(95)00547-P
Ishida, K., Nakagawa, H., Murakami, M. 2000 Microcyclamide, a cytotoxic cyclic hexapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 63, 1315-1317.
Strain(s): 298 
PubMed: 11000050
DOI: 10.1021/np000159p
Ishida, K., Okita, Y., Matsuda, H., Okino, T., Murakami, M. 1999 Aeruginosins, protease inhibitors from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 55, 10971-10988.
Strain(s): 8998298 
DOI: 10.1016/S0040-4020(99)00621-3
Ishida, K., Welker, M., Christiansen, G., Cadel-Six, S., Bouchier, C., Dittmann, E., Hertweck, C., de Marsac, N. T. 2009 Plasticity and evolution of aeruginosin biosynthesis in Cyanobacteria. Appl. Environ. Microbiol., 75, 2017-2026.
Strain(s): 98843 
PubMed: 19201978
DOI: 10.1128/AEM.02258-08
Ishida, T., Watanabe, M. M., Sugiyama, J., Yokota, A. 2001 Evidence for polyphyletic origin of the members of the orders of Oscillatoriales and Pleurocapsales as determined by 16S rDNA analysis. FEMS Microbiol. Lett., 201, 79-82.
Keywords: cyanobacterium; Pleurocapsales; 16S rDNA; phylogeny
Strain(s): 272085102116211821192128 
PubMed: 11445171
DOI: 10.1111/j.1574-6968.2001.tb10736.x
Ishida, T., Yokota, A., Sugiyama, J. 1997 Phylogenetic relationships of filamentous cyanobacterial taxa inferred from 16S rRNA sequence divergence. J. Gen. Appl. Microbiol., 43, 237-241.
Keywords: filamentous cyanobacteria; molecular phylogeny; Oscillatoriales; 16S rRNA
Strain(s): 272085102116211821192128 
PubMed: 12501325
DOI: 10.2323/jgam.43.237
Ishikawa, I. S. 1990 Characteristic structures of Spirulina trichome involved in gliding movement. Plant Morphol., 2, 7-14.
Keywords: gliding movement; Spirulina; thylakoid; trichome; motive force
Strain(s): 27 
DOI: 10.5685/plmorphol.2.7
Ishikawa, M., Takahashi, F., Nozaki, H., Nagasato, C., Motomura, T., Kataoka, H. 2009 Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes. Planta, 230, 543-552.
Keywords: aureochrome (AUREO); BL receptor; bZIP; LOV; stramenopiles
Strain(s): 12801017 
PubMed: 19544070
DOI: 10.1007/s00425-009-0967-6
Ishimitsu, M., Chihara, M. 1984 Four species of Cryptomonas (Class Cryptophyceae) in Japan. J. Jpn. Bot., 59, 161-169.
Strain(s): 274275276277278279280281282344345346347348 
Ishinishi, R., Matsuura, H., Tanaka, S., Nozawa, S., Tanada, K., Kawashita, N., Fujiyama, K., Miyasaka, H., Hirata, K. 2018 Isolation and characterization of a stress-responsive gene encoding a CHRD domain-containing protein from a halotolerant green alga. Gene, 640, 14-20.
Keywords: Stress response; Chlamydomonas reinhardtii; Secretory protein; Recombinant protein; Unknown function
Strain(s): 2235 
PubMed: 29017964
DOI: 10.1016/j.gene.2017.10.012
Ishitsuka, M. O., Kusumi, T., Kakisawa, H., Kaya, K., Watanabe, M. M. 1990 Microviridin: a novel tricyclic depsipeptide from the toxic cyanobacterium Microcystis viridis. J. Am. Chem. Soc., 112, 8180-8182.
Strain(s): 102 
Isono, T., Katoh, T. 1982 Cylindrical phycobilisomes from a blue-green alga, Anabaena variabilis. Plant Cell Physiol., 23, 1347-1355.
Keywords: blue-green alga (Anabaena variabilis); electron micrograph; cylindrical phycobilisomes; phycobilisomes; protein assembly
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076481
Isono, T., Katoh, T. 1983 Subparticles of Anabaena phycobilisomes. 1. Reconstruction of allophycocyanin cores and entire phycobilisomes. Plant Cell Physiol., 24, 357-368.
Keywords: allophycocyanin (assembly); blue-green algae (Anabaena variabilis); in vitro association (phycobilisome); phycobilisome core; phycobilisome; protein assembly
Strain(s): 2093 
Isozaki, A., Nakagawa, Y., Loo, M. H., Shibata, Y., Tanaka, N., Setyaningrum, D. L., Park, J.-W., Shirasaki, Y., Mikami, H., Huang, D., Tsoi, H., Riche, C. T., Ota, T., Miwa, H., Kanda, Y., Ito, T., Yamada, K., Iwata, O., Suzuki, K., Ohnuki, S., Ohya, Y., Kato, Y., Hasunuma, T., Matsusaka, S., Yamagishi, M., Yazawa, M., Uemura, S., Nagasawa, K., ,Watarai, H. Di Carlo, D., Goda, K. 2020 Sequentially addressable dielectrophoretic array for high-throughput sorting of large-volume biological compartments. Sci. Adv., 6, eaba6712 (article ID).
Strain(s): 484141 
PubMed: 32524002
DOI: 10.1126/sciadv.aba6712
Issarapayup, K., Powtongsook, S., Pavasant, P. 2009 Flat panel airlift photobioreactors for cultivation of vegetative cells of microalga Haematococcus pluvialis. J. Biotechnol., 142, 227-232.
Keywords: airlift photobioreactor; vegetative cells; astaxanthin; bioprocess design; microalga
Strain(s): 144 
PubMed: 19422861
DOI: 10.1016/j.jbiotec.2009.04.014
Issarapayup, K., Powtongsook, S., Pavasant, P. 2011 Economical review of Haematococcus pluvialis culture in flat-panel airlift photobioreactors. Aquac. Eng., 44, 65-71.
Keywords: Airlift photobioreactor; Microalga; Economical analysis; Bioprocess design
Strain(s): 144 
DOI: 10.1016/j.aquaeng.2011.03.002
Ito, T., Okabe, K., Mori, M. 2018 Growth reduction of Microcystis aeruginosa by clay ball elution solution. Appl. Clay Sci., 162, 223-229.
Keywords: Cyanobacterial bloom; Clay ball; Microcystis aeruginosa; Silicate; Diatom; Concrete
Strain(s): 711068 
DOI: 10.1016/j.clay.2018.06.018
Itoh, Y., Murakami, H., Ikeda, R. 1993 Studies on the growth limiting nutrients of red tide plankton in the tidal area [Kanchô-iki ni okeru akashio gen'in sôrui no zôshoku yokusei inshi no suitei]. Proc. Coast. Engineering, JSCE [Kaigan Kôgaku Ronbun-shû], 40, 1001-1005 (in Japanese without English title).
Strain(s): 323 
Itou, Y., Ishida, K., Shin, H. J., Murakami, M. 1999 Oscillapeptins A to F, serine protease inhibitors from the three strains of Oscillatoria agardhii. Tetrahedron, 55, 6871-6882.
Strain(s): 204205596 
DOI: 10.1016/S0040-4020(99)00341-5
Itou, Y., Okada, S., Murakami, M. 2001 Two structural isomeric siderophores from the freshwater cyanobacterium Anabaena cylindrica (NIES-19). Tetrahedron, 57, 9093-9099.
Keywords: iron; sidenophore; cyanobacteria; Anabaena cylindrica; CAS
Strain(s): 19 
DOI: 10.1016/S0040-4020(01)00934-6
Itou, Y., Suzuki, S., Ishida, K., Murakami, M. 1999 Anabaenopeptins G and H, potent carboxypeptidase A inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-595). Bioorg. Med. Chem. Lett., 9, 1243-1246.
Strain(s): 595 
PubMed: 10340607
DOI: 10.1016/S0960-894X(99)00191-2
Iwahori, K., Miyata, N., Umeda, Y., Aoyama, K., Shimoi, K., Kinae, N. 1999 Applicability of environmental microorganisms to alkaline single cell gel electrophoresis (comet) assay. Jpn. J. Water Treat. Biol., 35, 261-270 (in Japanese with English summary).
Keywords: comet assay; DNA damage; environmental microorganisms; Euglena gracilis; cell lysis; unwinding; electrophoresis; SDS; γ-irradiation
Strain(s): 49122403 
Iwahori, K., Miyata, N., Yamamoto, Y., Sone, D., Aoyama, K. 2004 Normalization of DNA damage indices in comet assay for comparing with various mutagenicity tests. Jpn. J. Water Treat. Biol., 40, 63-70.
Keywords: comet assay; tail moment; normalization; mutagenicity test
Strain(s): 49 
DOI: 10.2521/jswtb.40.63
Iwai, M., Hori, K., Sasaki-Sekimoto, Y., Shimojima, M., Ohta, H. 2015 Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation–inducible promoter from Chlamydomonas reinhardtii. Front. Microbiol. 6, 912 (article ID).
Keywords: algae; Nannochloropsis; phosphorus starvation; inducible promoter; triacylglycerol
Strain(s): 2145 
PubMed: 26441858
DOI: 10.3389/fmicb.2015.00912
Iwai, S., Fujita, K., Takanishi, Y., Fukushi, K. 2019 Photosynthetic endosymbionts benefit from host’s phagotrophy, including predation on potential competitors. Curr. Biol., 29, 3114-3119.
Strain(s): 227 
PubMed: 31495588
DOI: 10.1016/j.cub.2019.07.074
Iwami, N., Inamori, Y., Sugiura, N., Matsumura, M. 1996 Degradation characteris-tics of toxic Microcystis viridis by Mastigophora, Monas guttula using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ. 19, 140-146.
Keywords: degradation; Microcystis; microflagellate; toxic substance; aquatic large scale microcosm
Strain(s): 102 
Iwamoto, K., Ikawa, T. 2000 A novel glycolate oxidase requiring flavin mononucleotide as the cofactor in the prasinophycean alga Mesostigma viride. Plant Cell Physiol., 41, 988-991.
Keywords: flavin mononucleotide (FMN)-requiring enzyme; glycolate metabolism; glycolate oxidase; glycolate-oxidizing enzyme; Mesostigma viride; Prasinophyceae
Strain(s): 296 
PubMed: 11038060
DOI: 10.1093/pcp/pcd020
Iwamoto, K., Shiraiwa, Y. 2003 Characterization of NADH nitrate reductase from the coccolithophorid Emiliania huxleyi (Lohman) Hay & Mohler (Haptophyceae). Mar. Biotechnol., 5, 20-26.
Keywords: coccolithophorid; Emiliania huxleyi; enzyme purification; nitrate reductase; nitrate utilization
Strain(s): 837 
PubMed: 12925915
DOI: 10.1007/s10126-002-0051-8
Iwamoto, K., Shiraiwa, Y. 2012 Characterization of intracellular iodine accumulation by iodine-tolerant microalgae. Procedia Environ. Sco., 15, 34-42.
Keywords: growth stimulation; growth inhibition; haptophyte; iodine; iodine accumulation
Strain(s): 377837838 
DOI: 10.1016/j.proenv.2012.05.007
Iwamoto, K., Shiraiwa, Y. 2017 Accumulation of cesium by aquatic plants and algae. In Impact of Cesium on Plants and the Environment, Eds. by Gupta, D. & Walther, C., Springer International Publishing, pp. 171-185.
Keywords: Eustigmatophycean alga; Vacuoliviride crystalliferum; Fukushima 1st Nuclear Power Plant Accident; High cesium-accumulating microalgae; Phytoremediation; Radioactive cesium
Strain(s): 329145821312352 
DOI: 10.1007/978-3-319-41525-3_10
Iwamura, T. 1960 Distribution of nucleic acids among subcellular fractions of Chlorella. Biochim. Biophys. Acta, 42, 161-163.
Strain(s): 2170 
PubMed: 13718345
DOI: 10.1016/0006-3002(60)90766-6
Iwamura, T. 1962 Cellular distributions and properties of nucleic acid species in Chlorella. In Symposium in Institute of Applied Microbiology, University of Tokyo, Vol. III, pp. 259-278 (in Japanese).
Strain(s): 2170 
Iwamura, T. 1962 Characterization of the turnover of chloroplast deoxyribonucleic acid in Chlorella. Biochim. Biophys. Acta, 61, 472-474.
Strain(s): 2170 
DOI: 10.1016/0926-6550(62)90155-X
Iwamura, T. 1965 Change of nucleic acid content in Chlorella cells during the course of their life-cycle. J. Biochem., 42, 575-589.
Strain(s): 2170 
Iwamura, T. 1966 Nucleic acid in chloroplasts and metabolic DNA. Progr. Nucl. Acid Res. Mol. Biol., 5, 133-155.
Strain(s): 2170 
DOI: 10.1016/S0079-6603(08)60233-0
Iwamura, T. 1970 Phylogenetic aspects of algal biochemistry (1) DNA species in algae. Ann. NY Acad. Sci., 175, 488-510.
Strain(s): 2170 
Iwamura, T. 1987 The feasibility of Chlorella as the exchanger of CO2 for O2 and the food resources in the space station. In Biological Sciences in Space 1986, Eds. by Watanabe, S. et al., MYU Research, Tokyo, pp. 257-264.
Strain(s): 2170 
Iwamura, T., Aoshima, J. 1984 Multiplication of chloroplast DNA. Protein, Nucleic Acid and Enzyme, 29, 191-201 (in Japanese).
Strain(s): 2170 
Iwamura, T., Hase, E., Moriyama, Y., Tamiya, H. 1955 Life cycle of the green alga Chlorella with special reference to the protein and nucleic acids contents of cells in successive formative stages. In A.I. Virtanen homage volume, Biochemistry of Nitrogen, Helsinki, pp. 89-103.
Strain(s): 2170 
Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. I. Chromatographic analysis of the acid-soluble nucleotides. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 577-586.
Strain(s): 2170 
Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. II. Quantitative changes in component-nucleotides of the acid-soluble fraction of algal cells during their life-cycle. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 587-596.
Strain(s): 2170 
Iwamura, T., Katoh, K., Nishimura, T. 1982 Semi-conservative replication of chloroplast DNA in synchronized Chlorella. Cell Struct. Funct., 7, 71-86.
Strain(s): 2170 
DOI: 10.1247/csf.7.71
Iwamura, T., Kunieda, R. Kuwashima, S., Nishimura, T. 1988 Inhibition of growth of Chlorella by various drugs. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 23, 1-11.
Strain(s): 2170 
Iwamura, T., Kuwashima, S. 1964 Formation of adenosine 5-triphosphate from polyphosphate by a cell-free extract from Chlorella. J. Gen. Appl. Microbiol., 10, 83-86.
Strain(s): 2170 
DOI: 10.2323/jgam.10.83
Iwamura, T., Kuwashima, S. 1964 Further observations on the deoxyribonucleic acid species in Chlorella showing light-dependent metabolic turnover. Biochim. Biophys. Acta, 82, 678-679.
Strain(s): 2170 
PubMed: 14156741
Iwamura, T., Kuwashima, S. 1969 Two DNA species in chloroplasts of Chlorella. Biochim. Biophys. Acta, 174, 330-339.
Strain(s): 2170 
PubMed: 5766301
DOI: 10.1016/0005-2787(69)90258-5
Iwamura, T., Muto, N. 1964 Incorporation of 5-bromouracil into the two kinds of DNA in Chlorella. Plant Cell Physiol., 5, 359-360.
Strain(s): 2170 
Iwamura, T., Myers, J. 1959 Changes in the content and distribution of the nucleic acid bases in Chlorella during the life cycle. Arch. Biochem. Biophys., 84, 267-277.
Strain(s): 2170 
PubMed: 14406172
DOI: 10.1016/0003-9861(59)90591-0
Iwamura, T., Nagai, H., Ichimura, S. 1970 Improved methods for determining contents of chlorophyll, protein, ribonucleic acid, and deoxyribonucleic acid in planktonic populations. Int. Revue Ges. Hydrobiol., 55, 131-147.
Strain(s): 2170 
DOI: 10.1002/iroh.19700550106
Iwamura, T., Takeda, Y., Nishimura, T. 1990 A c-myc like DNA fragment in Chlorella. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 24, 23-40 (in Japanese).
Strain(s): 2170 
Iwasaka, M., Mizukawa, Y. 2014 Magneto-optical properties of biogenic photonic crystals in algae. J. Appl. Phys., 115, 17B501 (article ID).
Strain(s): 13041313 
DOI: 10.1063/1.4861556
Iwasaka, M., Mizukawa, Y. 2015 Effect of intense magnetic fields on the convection of biogenic guanine crystals in aqueous solution. J. Appl. Phys., 117, 17E127 (article ID).
Strain(s): 407 
DOI: 10.1063/1.4917330
Iwasaki, H., Sasada, K. 1969 Studies on the red tide dinoflagellates - II. On Heterosigma inlandica appeared in Gokasho Bay, Shima Peninsula. Bull. Jpn. Soc. Sci. Fish., 35, 943-947 (in Japanese with English summary).
Strain(s): 5 
Iwase, S., Abe, T. 2010 Identification and change in concentration of musty-odor compounds during frowth in blue-green algae. J. Sch. Marine Sci. Tech., Tokai Univ., 8, 27-33.
Strain(s): 5122119 
Iwata, H., Haji, A., Hashimoto, K., Mitsuyanagi, K., Kanegae, Y. 1991 Methods for producing heat-unsoluble β-1,3-glucan [Kanetsu gyôkosei β-1,3-glucan no seizôhô]. In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Hei3-163102, 5 pp. (in Japanese).
Strain(s): 474849 
Iwataki, M., Botes, L., Sawaguchi, T., Sekiguchi, K., Fukuyo, Y. 2003 Cellular and body scale structure of Heterocapsa ovata sp. nov. and Heterocapsa orientalis sp. nov. (Peridiniales, Dinophyceae). Phycologia, 42, 629-637.
Strain(s): 472 
DOI: 10.2216/i0031-8884-42-6-629.1
Iwataki, M., Hansen, G., Sawaguchi, T., Hiroishi, S., Fukuyo, Y. 2004 Investigations of body scales in twelve Heterocapsa species (Peridiniales, Dinophyceae), including a new species H. pseudotriquetra sp. nov. Phycologia, 43, 394-403.
Strain(s): 420472473 
DOI: 10.2216/i0031-8884-43-4-394.1
Izumi, Y., Aikawa, S., Matsuda, F., Hasunuma, T., Kondo, A. 2013 Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen. J. Chromatogr. B, 930, 90-97.
Keywords: Size-exclusion chromatography; Native glycogen; Qantitative analysis; Polyhydroxy methacrylate; Microalgae; Arthrospira platensis
Strain(s): 39 
PubMed: 23727872
DOI: 10.1016/j.jchromb.2013.04.037
Jaiswal, T. P., Chakraborty, S., Singh, P., Mishra, A. K., Singh, S. S. 2021 Description of hot spring dwelling Mastigocladus ambikapurensis sp. nov., using a polyphasic approach. Plant Syst. Evol., 307, 33 (article ID).
Keywords: 16S rRNA gene; Cyanobacteria; ITS; Mastigocladus; Phylogeny
Strain(s): 5923754 
DOI: 10.1007/s00606-021-01755-2
Jang, M. H., Ha, K., Lucas, M. C., Joo, G. J., Takamura, N. 2004 Changes in microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish. Aquat. Toxicol., 68, 51-59.
Keywords: Microcystis aeruginosa; microcystin; fish-induced defence; chemical cues; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi
Strain(s): 448899 
PubMed: 15110469
DOI: 10.1016/j.aquatox.2004.02.002
Jang, M.-H., Ha, K., Jung, J.-M., Lee, Y.-J., Takamura, N. 2006 Increased microcystin production of Microcystis aeruginosa by indirect exposure of nontoxic cyanobacteria: potential role in the development Microcystis bloom. Bull. Environ. Contam. Toxicol., 76, 957-962.
Strain(s): 7488204 
Jang, M.-H., Ha, K., Takamura, N. 2007 Reciprocal allelopathic responses between toxic cyanobacteria (Microcystis aeruginosa) and duckweed (Lemna japonica). Toxicon, 49, 727-733.
Keywords: Microcystis aeruginosa Kützing; Lemna japonica Landolg; microcystin; allelochemicals; reciprocal allelopathic responses; growth; eutrophic waters
Strain(s): 103107 
PubMed: 17207510
DOI: 10.1016/j.toxicon.2006.11.017
Jang, M.-H., Ha, K., Takamura, N. 2008 Microcystin production by Microcystis aeruginosa exposed to different stages of herbivorous zooplankton. Toxicon, 51, 882-889.
Keywords: Microcystis aeruginosa; induced defense; different stages of zooplankton; infochemicals; intracellular microcystin; extracellular microcystin
Strain(s): 8898103107 
PubMed: 18243271
DOI: 10.1016/j.toxicon.2007.12.015
Jang, M.-H., Jung, J.-M., Takamura, N. 2007 Changes in microcystin production in cyanobacteria exposed to zooplankton at different population densities and infochemical concentrations. Limnol. Oceanogr., 52, 1454-1466.
Strain(s): 8898107 
DOI: 10.4319/lo.2007.52.4.1454
Jang, M-H., Ha, K., Joo, G-J., Takamura, N. 2003 Toxin production of cyanobacteria is increased by exposure to zooplankton. Freshw. Biol., 48, 1540-1550.
Keywords: info-chemicals; microcystin production; Microcystis aeruginosa; zooplankton; zooplankton culture media filtrate
Strain(s): 44878899 
DOI: 10.1046/j.1365-2427.2003.01107.x
Jangir, M. M., Chowdhury, S., Bhagavatula, V. 2021 Differential response of photosynthetic apparatus towards alkaline pH treatment in NIES-39 and PCC 7345 strains of Arthrospira platensis. Int. Microbiol., 24, 219-231.
Keywords: Arthrospira platensis; Thylakoid; PBsomes; Alkalinity; PSII; PSI; TEM
Strain(s): 39 
PubMed: 33438119
DOI: 10.1007/s10123-021-00160-6
Jangir, M. M., Vani, B., Chowdhury, S. 2019 Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and In-silico studies: an indication towards alkaline pH acclimation. Physiol. Mol. Biol. Plants 25, 1175–1183.
Keywords: Arthrospira platensis NIES-39; Na+/H+ antiporters; pH; Real-time PCR; CPA family
Strain(s): 39 
PubMed: 31564780
DOI: 10.1007/s12298-019-00687-z
Janouskovec, J., Horák, A., Oborník, M., Lukes, J., Keeling, P. J. 2010 A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc. Natl. Acad. Sci. U. S. A., , 10949-10954.
Keywords: Apicomplexa: Chromera velia: CCMP3155: plastid evolution: chloroplast genome
Strain(s): 4391 
PubMed: 20534454
DOI: 10.1073/pnas.1003335107
Jeong, S.-Y., Son, H.-J. 2021 Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides. J. Microbiol., 59, 389-400.
Keywords: algicide; Bacillus sp. SY-1; Cochlodinium polykrikoides; harmful algal bloom; mycosubtilin
Strain(s): 23227238298316446682 
PubMed: 33779952
DOI: 10.1007/s12275-021-1086-8
Jester, B. et al. 2021 Expression and manufacturing of protein therapeutics in spirulina. bioRXiv
Keywords: Arthrospira platensis; spirulina; campylobacter; single‐domain antibody; VHH
Strain(s): 39 
DOI: 10.1101/2021.01.25.427910
Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID).
Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation
Strain(s): 3808 
PubMed: 31200330
DOI: 10.1016/j.aquatox.2019.05.017
Jiang, R., Qin, L., Feng, S., Huang, D., Wang, Z., Zhu, S. 2021 The joint effect of ammonium and pH on the growth of Chlorella vulgaris and ammonium removal in artificial liquid digestate. Bioresour. Technol., 325, 124690 (article ID).
Keywords: Chlorella vulgaris; Ammonium; pH; Free ammonia; Cell components; Extracellular organic matters
Strain(s): 227 
DOI: 1016/j.biortech.2021.124690
Jiang, Y., Chen, Y., Yang, S., Li, R. 2020 Phylogenetic relationships and genetic divergence of paralytic shellfish toxin- and cylindrospermopsin- producing Cylindrospermopsis and raphidiopsis. Harmful Algae, 93, 101792 (article ID).
Keywords: Biosynthesis; Cyanotoxin; Cylindrospermopsin; Gene cluster; Phylogeny; Saxitoxin
Strain(s): 9329911041 
PubMed: 32307073
DOI: 10.1016/j.hal.2020.101792
Jiang, Y., Liu, Y. 2020 Influence of increased nutrient supply on Microcystis aeruginosa at cellular and proteomic levels. Aquat. Microb. Ecol., 85, 47-58.
Keywords: Cyanobacteria; Nitrogen; Phosphorus; Protein-protein interaction network; Growth; Microcystis
Strain(s): 843 
DOI: 10.3354/ame01939
Jiang, Y., Liu, Y., Zhang, J. 2020 Antibiotic contaminants reduced the treatment efficiency of UV-C on Microcystis aeruginosa through hormesis. Environ. Pollut., 261, 114193 (article ID).
Keywords: Combined pollution; Ultraviolet irradiation; Cyanobacterial control; Microcystins; Proteomic resp
Strain(s): 843 
PubMed: 32088440
DOI: 10.1016/j.envpol.2020.114193
Jin, J., Zhang, X., Kusui, T. 2018 Preliminary toxicity Assessment of combined Sewer overflows in Toyama, Japan. J. Water Environ. Technol., 16, 185-198.
Keywords: combined sewer overflows (CSOs); toxicity identification evaluation (TIE); toxicity test; heavy metals; aquatic organisms
Strain(s): 35 
DOI: 10.2965/jwet.17-041
Jin, P., Gao, K. 2016 Reduced resilience of a globally distributed coccolithophore to ocean acidification: Confirmed up to 2000 generations. Mar. Pollut. Bull., 103, 101-108.
Keywords: Ocean acidification; Coccolithophore; Evolution; Phenotypic plasticity; Fitness
Strain(s): 1318 
PubMed: 26746379
DOI: 10.1016/j.marpolbul.2015.12.039
Jin, P., Gao, K., Beardall, J. 2013 Evolutionary responses of a coccolithophorid Gephyrocapsa oceanica to ocean acidification. Evolution, 67, 1869-1878.
Keywords: CCM; CO2; coccolithophore; Gephyrocapsa; pH; selection
Strain(s): 1318 
PubMed: 23815645
DOI: 10.1111/evo.12112
Jin, P., Gao, K., Villafañe, V. E., Campbell, D. A., Helbling, E. W. 2013 Ocean acidification alters the photosynthetic responses of a coccolithophorid to fluctuating ultraviolet and visible radiation. Plant Physiol., 162, 2084-2094.
Strain(s): 1318 
PubMed: 23749851
DOI: 10.1104pp.113.219543
Jin, P., Liu, N., Gao, K. 2019 Physiological responses of a coccolithophore to multiple environmental drivers. Mar. Pollut. Bull., 146, 225-235.
Keywords: Coccolithophores; Global change; Ocean acidification; Multiple drivers; Synergistical
Strain(s): 1318 
PubMed: 31426151
DOI: 10.1016/j.marpolbul.2019.06.032
Jo, B.-H., Lee, C. S., Song, H.-R., Lee, H.-G., Oh, H.-M. 2014 Development of novel microsatellite markers for strain-specific identification of Chlorella vulgaris. J. Microbiol. Biotechnol., 24, 10.3354/ame01939
Keywords: Chlorella vulgaris; chloroplast; microsatellite; marker; polymorphism; sequence repeat
Strain(s): 64164268612692170 
PubMed: 24931503
DOI: 10.4014/jmb.1405.05047
Jo, S.-W., Do, J.-M., Kang, N.-S., Park, J. M., Lee, J. H., Kim, H. S., Hong, J. W., Yoon, H.-S. 2020 Isolation, identification, and biochemical characteristics of a cold-tolerant Chlorella vulgaris KNUA007 isolated from King George Island, Antarctica. J. Mar. Sci. Eng., 8, 935 (article ID).
Keywords: Chlorella vulgaris; cold-tolerant; PUFAs (polyunsaturated fatty acids); calorific value
Strain(s): 227 
DOI: 10.3390/jmse8110935
Johansen, JR., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J Jr., Štenclová, L., Hauer, T. 2017 Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria). PLoS One, 12, e0186393 (article ID).
Strain(s): 21304073 
PubMed: 29073157
DOI: 10.1371/journal.pone.0186393
Johnson, L. M., Hoagland, K. D., Gretz, M. R. 1995 Effects of bromide and iodine on stalk secretion in the biofouling diatom Achnanthes longipes (Bacillariophyceae). J. Phycol., 31, 401-412.
Keywords: Achnanthes longipes; Bacillariophyceae; biofouling; bromide; diatom; EPS secretion; image analysis; inhibition of adhesion; iodine; Lotus-FITC; stalks
Strain(s): 330 
DOI: 10.1111/j.0022-3646.1995.00401.x
Jones, M. R., Pinto, E., Torres, M. A., Dörr, F., Mazur-Marzec, H., Szubert, K., Tartaglione, L., Dell'Aversano, C., Miles, C. O., Beach, D. G., McCarron, P., Sivonen, K., Fewer, D. P., Jokela, J., Janssen, E. M.-L. 2021 CyanoMetDB, a comprehensive public database of secondary metabolites from cyanobacteria. Water Res., 196, 117017 (article ID).
Strain(s): 90 
PubMed: 33765498
DOI: 10.1016/j.watres.2021.117017
Jong, L. W., Fujiwara, T., Hirooka, S., Miyagishima, S. 2021 Cell size for commitment to cell division and number of successive cell divisions in cyanidialean red algae. Protoplasma, 258, 1103–1118.
Keywords: Cell cycle; Cyanidiales; Cyanidioschyzon; Cyanidium; Galdieria; Multiple fission
Strain(s): 3377 
PubMed: 33675395
DOI: 10.1007/s00709-021-01628-y
Joo, J. C., Ahn, C. H., Lee, S., Jang, D-G., Lee, W. H., Ryu, B. R. 2016 Algal growth potential of Microcystis aeruginosa from reclaimed water. Water Environ. Res., 88, 54-62.
Keywords: algal growth potential (AGP); Microcystis aeruginosa; reclaimed water; recreational water reuse; soluble reactive phosphorus; wastewater reclamation plant
Strain(s): 298 
PubMed: 26803027
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Jouenne, F., Eikrem, W., Le Gall, F., Johnsen, G., Vaulot, D. 2011 Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a solitary coccoid prasinophyte from the South-East Pacific Ocean. Protist, 162, 70-84.
Keywords: binary fission; field emission scanning electron microscopy (FE-SEM); picoplankton; Prasinoderma; Prasinophyceae; taxonomy
Strain(s): 2582 
PubMed: 20674490
DOI: 10.1016/j.protis.2010.04.005
Ju, C., Van de Poel, B., Cooper,E.D., Thierer, J., Gibbons, T., Delwiche, C.F., Chang, C. 2015 Conservation of ethylene as a plant hormone over 450 million years of evolution. Nature Plants, 1, 14004 (article ID).
Strain(s): 995 
PubMed: 27246051
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Jung, J.-M., Lee, Y.-J., Park, H.-K., Jung, E.-Y., Joo, G.-J. 2003 The analysis of cyanobacterial neurotoxins by high-performance liquid chromatography-mass spectrometry. Algae, 18, 233-238.
Keywords: anatoxin-a; Aphanizomenon flos-aquae; cyanobacterial toxins; LC-MS; saxitoxin
Strain(s): 81 
DOI: 10.4490/ALGAE.2003.18.3.23
Jung, S. W., Kim, B.-H., Katano, T., Kong, D.-S., Han, M.-S. 2008 Pseudomonas flurescens HYK0210-SK09 offers species-specific biological control of winter algal blooms caused by freshwater diatom Stephanodiscus hantzschii. J. Appl. Microbiol., 105, 186-195.
Keywords: algicidal bacterium; algicidal mechanism; biological control; indoor mesocosm; Pseudomonas fluorescens; Stephanodiscus hantzschii
Strain(s): 1944298 
PubMed: 18266701
DOI: 10.1111/j.1365-2672.2008.03733.x
Jung, S.-H., McHardy, C., Rauh, C., Jahn, A., Luzi, G., Delgado, A., Buchholz, R., Lindenberger, C. 2021 A new approach for calculating microalgae culture growth based on an inhibitory efect of the surrounding biomass. Bioprocess. Biosyst. Eng., 44, 1671-1684.
Keywords: Algae cultivation; Numerical methods; Growth kinetics; Inhibitory efects
Strain(s): 39 
PubMed: 33860849
DOI: 10.1007/s00449-021-02550-6
Kabata, K., Sadakane, H., Kurose, M., Kobayakawa, A., Watanabe, T., Hatano, S. 1980 Changes in fatty acid composition of membrane fractions during hardening of Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 25, 91-97.
Strain(s): 2170 
Kabata, K., Sadakane, H., Miyachi, S., Nagata, K., Hatano, S., Watanabe, T. 1979 Studies on lipid changes during the development of frost hardiness in Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 23, 155-161.
Strain(s): 2170 
Kaeriyama, H., Katsuki, E., Otsubo, M., Yamada, K., Ichimi, K., Tada, K., Harrison, P. J. 2011 Effects of temperature and irradiance on growth of strains belonging to seven Skeletonema species isolated from Dokai Bay, southern Japan. Eur. J. Phycol., 46, 113-124.
Keywords: Dokai Bay; irradiance; physiology; Skeletonema species; specific growth rate; temperature
Strain(s): 2837283828392841284228432844 
DOI: 10.1080/09670262.2011.565128
Kaewpintong, K., Shotipruk, A., Powtongsook, S., Pavasant, P. 2007 Photoautotrophic high-density cultivation of vegetative cells of Haematococcus pluvialis in airlift bioreactor. Bioresour. Technol., 98, 288-295.
Keywords: Airlift bioreactors; Astaxanthin; Autotrophic; Bioprocess design; Bubble columns; Microalgae
Strain(s): 144 
PubMed: 16516464
DOI: 10.1016/j.biortech.2006.01.011
Kai, A., Yoshii, Y., Nakayama, T., Inouye, I. 2008 Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159, 435-457.
Keywords: flagellar apparatus; Phaeophyceae; Phaeothamniophyceae; pigment composition; Xanthophyceae; phylogeny
Strain(s): 1862186318641865 
PubMed: 18358776
DOI: 10.1016/j.protis.2007.12.003
Kajikawa, M., Yamato, K. T., Kohzu, Y., Shoji, S., Sakai, Y., Fukuzawa, H. 2006 A front-end desaturase from the green alga Chlamydomonas reinhardtii produces pinolenic and coniferonic acids by ω13 desaturation in methylotrophic yeast and tobacco. Plant Cell Physiol., 47, 64-73.
Keywords: Chlamydomonas reinhardtii; Δ5-unsaturated bis-methylene-interrupted fatty acids; fatty acid desaturase; Pichia pastoris; tobacco plant
Strain(s): 2235 
PubMed: 16267098
DOI: 10.1093/pcp/pci224
Kajiwara, S., Kakizono, T., Saito, T., Kondo, K., Ohtani, T., Nishio, N., Nagai, S., Misawa, N. 1995 Isolation and functional identification of a novel cDNA for astaxanthin biosynthesis from Haematococcus pluvialis, and astaxanthin synthesis in Escherichia coli. Plant Mol. Biol., 29, 343-352.
Keywords: astaxanthin; canthaxanthin; carotenoid; xanthophyll; Haematococcus pluvialis; green alga
Strain(s): 144 
PubMed: 7579184
DOI: 10.1007/BF00043657
Kakimoto, M., Ishikawa, T., Miyagi, A., Saito, K., Miyazaki, M., Asaeda, T., Yamaguchi, M., Uchiyama, H., Kawai-Yamada, M. 2014 Culture temperature affects gene expression and metabolic pathways in the 2-methylisoborneol-producing cyanobacterium Pseudanabaena galeata. J. Plant Res., 171, 292-300.
Keywords: 2-MIB; Cyanobacteria; Gene expression; Metabolomics; Temperature-induction
Strain(s): 512 
PubMed: 24140001
DOI: 10.1016/j.jplph.2013.09.005
Kakizono, T., Kobayashi, M., Nagai, S. 1992 Effect of carbon/nitrogen ratio on encystment accompanied with astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 403-405.
Strain(s): 144 
DOI: 10.1016/0922-338X(92)90041-R
Kakuta, S., Suzaki, T. 2007 Ca2+- and glycoconjugates-dependent prey capture in the heliozoan Actinophrys sol. Eur. J. Protistol., 44, 163-167.
Keywords: calium ion influx; Con A; exocytosis; extrusome; glycoprotein; secretory granule
Strain(s): 2497 
PubMed: 18178392
DOI: 10.1016/j.ejop.2007.11.001
Kamata, K., Piao, Z., Suzuki, S., Fujimori, T., Tajiri, W., Nagai, K., Iyoda, T., Yamada, A., Hayakawa, T., Ishiwara, M., Horaguchi, S., Belay, A., Tanaka, T., Takano, K., Hangyo M. 2014 Spirulina-templated metal microcoils with controlled helical structures for THz electromagnetic responses. Sci Rep, 4, 4919 (article ID).
Strain(s): 3946 
PubMed: 24815190
DOI: 10.1038/srep04919
Kamaya,Y., Tsuboi, S., Takada, T., Suzuki, K. 2006 Growth stimulation and inhibition effects of 4-hydroxybenzoic acid and some related compounds on the freshwater green alga Pseudokirchneriella subcapitata. Arch. Environ. Contam. Toxicol., 51, 537-541.
Strain(s): 35 
DOI: 10.1007/s00244-005-0320-4
Kamei-Ishikawa, N., Maeda, T., Soma, M., Yoshida, N., Sameshima, Y., Sasamoto, M., Higashiyama, Y., Touno, E., Ito, A. 2020 Tylosin degradation during manure composting and the effect of the degradation byproducts on the growth of green algae. Sci. Total Environ., 718, 137295 (article ID).
Keywords: Sheep feces; Half-life; Thermal degradation; Elution from artificial rainwater; Acute toxicity test; Raphidocelis subcapitata
Strain(s): 35 
DOI: 10.1016/j.scitotenv.2020.137295
Kamikawa, R., Asai, J., Miyahara, T., Murata, K., Oyama, K., Yoshimatsu, S., Yoshida, T., Sako, Y. 2006 Application of a real-time PCR assay to a comprehensive method of monitoring harmful algae. Mircobes Environ., 21, 163-173.
Keywords: harmful algal bloom (HAB); molecular monitoring; real-time PCR; red tide
Strain(s): 7121603 
DOI: 10.1264/jsme2.21.163
Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.
Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1
Strain(s): 272935763581 
PubMed: 29803116
DOI: 10.1016/j.protis.2018.04.009
Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID).
Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas
Strain(s): 4175341349137113731374 
PubMed: 23800323
DOI: 10.1186/1471-2148-13-131
Kamikawa, R., Masuda, I., Demura, M., Oyama, K., Yoshimatsu, S., Kawachi, M., Sako, Y. 2009 Mitochondrial group II introns in the Raphidophycean flagellate Chattonella spp. suggest a diatom-to-Chattonella lateral group II intron transfer. Protist, 160, 364-375.
Keywords: Chattonella; cytochrome c oxidase subunit 1 (cox1); diatoms; group II intron; lateral transfer; Raphidophyceae
Strain(s): 1231485861151181211614625575586036717168491303197519762391240124022403240434223429 
PubMed: 19346162
DOI: 10.1016/j.protis.2009.02.003
Kamikawa, R., Masuda, I., Oyama, K., Yoshimatsu, S., Sako, Y. 2007 Genetic variation in mitochondrial genes and intergenic spacer region in harmful algae Chattonella species. Fish. Sci., 73, 871-880.
Keywords: Chattonella sp.; cytochrome c oxidase subunit 1 (cox1); cytochrome c oxidase subunit 2 (cox2); genetic diversity; harmful algae; mitochondria
Strain(s): 123148586115118121161557558603671849342234283429 
DOI: 10.1111/j.1444-2906.2007.01408.x
Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570.
Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads
Strain(s): 1735041753458610451349 
PubMed: 19577655
DOI: 10.1016/j.ympev.2009.06.016
Kamikawa, R., Shiratori, T., Ishida, K-I., Miyashita, H., Roger, A. J. 2016 Group II intron-mediated trans-splicing in the green-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans. Genome Biol. Evol., 8, 458-466.
Keywords: Diphyllatia; introns; mitochondria; inverted repeats; trans-splicing
Strain(s): 3764 
PubMed: 26833505
DOI: 10.1093/gbe/evw011
Kamikawa, R., Tanifuji, G., Kawachi, M., Miyashita, H., Hashimoto, T., Inagaki, Y. 2015 Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum. Genome Biol. Evol, 7, 1133–1140.
Keywords: genome reduction; Lepidodinium; Pedinophyceae; secondary plastids; plastid replacement
Strain(s): 1868 
PubMed: 25840416
DOI: 10.1093/gbe/evv060
Kamikawa, R., Tanifuji, Ishikawa, G. S., Ishii, K., Matsuno, Y., Onodera, N. T., Ishida, K-I., Hashimoto, T., Miyashita, H., Mayama, S., Inagaki, Y. 2015 Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes. Mol. Biol. Evol., 32, 2598-2604.
Keywords: apochlorotic diatoms; nonphotosynthetic plastid genome; genome reduction; ATP synthase complex; Twin-arginine translocator
Strain(s): 3581 
PubMed: 26048548
DOI: 10.1093/molbev/msv134
Kamikawa, R., Yabuki, A., Nakayama, T., Ishida, K-I., Hashimoto, T., Inagaki, Y. 2011 Cercozoa comprises both EF-1α-containing and EFL-containing members. Eur. J. Protistol., 47, 24-28.
Keywords: Cercozoa; Elongation factor 1α; Elongation factor-like protein
Strain(s): 2378 
PubMed: 21071191
DOI: 10.1016/j.ejop.2010.08.002
Kamikawa, R., Yazaki, E., Tahara, M., Sakura, T., Matsuo, E., Nagamune, K., Hashimoto, T., Inagaki, Y. 2018 Fates of evolutionarily distinct, plastid‐type glyceraldehyde 3‐phosphate dehydrogenase genes in kareniacean dinoflagellates. J. Eukaryot. Microbiol., 65, 669-678.
Keywords: endosymbiotic gene transfer; gapC1 gene
Strain(s): 2411 
PubMed: 29478272
DOI: 10.1111/jeu.12512
Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y. 2015 Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae). Phycol. Res., 63, 19-28.
Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA
Strain(s): 357635773578357935803581 
DOI: 10.1111/pre.12072
Kamiya, A. 1988 Blue light-induced in vivo absorbance changes and in vitro activation of nitrate reductase in a nitrate-starved Chlorella mutant. Plant Cell Physiol., 29, 489-496.
Keywords: blue light effect; Chlorella; light-induced absorbancechange; NADH-nitrate reductase
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a077519
Kamiya, A. 1989 Effects of blue light and ammonia on nitrogen metabolism in a colorless mutant of Chlorella. Plant Cell Physiol., 30, 513-521.
Keywords: ammonia effect; blue light effect; Chlorella; glutamine synthetase; nitrate uptake; nitrogen metabolism
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a077770
Kamiya, A., Miyachi, S. 1974 Effects of blue light on respiration and carbon dioxyde fixation in colorless Chlorella mutant cells. Plant Cell Physiol., 15, 927-937.
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a075082
Kamiya, A., Miyachi, S. 1975 Blue light-induced formation of photphoenolpyruvate carboxylase in colorless Chlorella mutant cells. Plant Cell Physiol., 16, 729-736.
Strain(s): 2162 
Kamo, T., Shimogawara, K., Fukuzawa, H., Muto, S., Miyachi, S. 1990 Subunit constitution of carbonic anhydrase from Chlamydomonas reinhardtii. Eur. J. Biochem., 192, 557-562.
Strain(s): 2235 
PubMed: 2120056
DOI: 10.1111/j.1432-1033.1990.tb19261.x
Kanai, R., Aoki, S., Miyachi, S. 1965 Quantitative separation of inorganic polyphosphates in Chlorella cells. Plant Cell Physiol., 6, 467-473.
Strain(s): 2170 
Kanai, R., Miyachi, S., Miyachi, S. 1963 Light-induced formation and mobilization of polyphosphate "C" in Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 613-618.
Strain(s): 2170 
Kanazawa, T. 1958 Synchronous culture of Chlorella with special reference of the processes of assimilation of potassium magnesium and iron. J. Gen. Appl. Microbiol., 4, 102-107.
Strain(s): 2170 
DOI: 10.2323/jgam.4.102
Kanazawa, T., Fujita, C., Yuhara, T., Sasa, T. 1958 Mass culture of unicellular algae using "open circulation method". J. Gen. Appl. Microbiol., 4, 135-152.
Strain(s): 2170 
DOI: 10.2323/jgam.4.135
Kanazawa, T., Yanagisawa, T., Tamiya, H. 1966 Aliphatic amines occurring in Chlorella cells and changs of their contents during the life cycle of the alga. Z. Botanik, Festschr. f. E. Bünning, 54, 57-62.
Strain(s): 2170 
Kanda, H., Li, P., Ikehara, T., Yasumoto-Hirose, M. 2012 Lipids extracted from several species of natural blue–green microalgae by dimethyl ether: Extraction yield and properties. Fuel, 95, 88-92.
Keywords: Lipids; Microalgae; Extraction; Dimethyl ether
Strain(s): 5951263 
DOI: 10.1016/j.fuel.2011.11.064
Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H. 2017 CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex. Sci Rep, 7, 17873 (article ID).
Strain(s): 6768 
PubMed: 29259295
DOI: 10.1038/s41598-017-18251-8
Kaneko, H., Shimada, A. Hirayama, K. 2004 Short-term algal toxicity test based on phosphate uptake. Water Res., 38, 2173-2177.
Keywords: Selenastrum capricornutum; Phosphate uptake; Short-term toxicity test
Strain(s): 35 
PubMed: 15087199
DOI: 10.1016/j.watres.2004.02.006
Kaneko, H., Yamaguchi, M. 1995 Toxicity evaluation of municipal solid waste incinerator fly ash by algal assay. Reports Facul. Eng. Yamanashi Univ., 46, 84-89 (in Japanese with English summary).
Strain(s): 35 
Kaneko, H., Yamaguchi, M., Ikeda, F. 1996 Toxicity of municipal solid waste incinerator fly ash and the contribution of Cadmium. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 19, 563-568 (in Japanese with English summary).
Keywords: MWI fly ash; leachate; algal assay; Daphnia test; hazardous waste
Strain(s): 35 
Kaneko, T., Nakajima, N., Okamoto, S., Suzuki, I., Tanabe, Y., Tamaoki, M., Nakamura, Y., Kasai, F., Watanabe, A., Kawashima, K., Kishida, Y., Ono, A., Shimizu, Y., Takahashi, C., Minami, C., Fujishiro, T., Kohara, M., Katoh, M., Nakazaki, N., Nakayama, S., Yamada, M., Tabata, S., Watanabe, M. M. 2007 Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res., 14, 247-256.
Strain(s): 843 
PubMed: 18192279
DOI: 10.1093/dnares/dsm026
Kanesaki, Y., Imamura, S., Minoda, A., Tanaka, K. 2012 External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae. DNA Res., 19, 289-303.
Keywords: cell cycle; clustering analysis; Cyanidioschyzon; organelle; transcriptome
Strain(s): 3377 
PubMed: 22518007
DOI: 10.1093/dnares/dss013
Kang, B.-H., Tan, S., Ho, K.-K. 1988 Isolation of water-soluble cytochromes from cyanobacteria by adsorption chromatography. Archi. Biochem. Biophys., 263, 387-393.
Strain(s): 44 
PubMed: 3132107
DOI: 10.1016/0003-9861(88)90650-9
Kang, C. B. H., Ho. K.-K. 1991 Characteri-zation of a soluble inorganic pyrophosphatase from Microcystis aeruginosa. Archi. Biochem. Biophys., 289, 281-288.
Strain(s): 44 
PubMed: 1654852
DOI: 10.1016/0003-9861(91)90473-V
Kang, C. D., Lee, J. S., Park, T. H., Sim, S. J. 2005 Comparison of heterotrophic and photoautotrophic induction on astaxanthin production by Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 68, 237-241.
Strain(s): 144 
PubMed: 15711942
DOI: 10.1007/s00253-005-1889-2
Kang, C.-D., Sim, S.-J. 2008 Direct extraction of astaxanthin from Haematococcus culture using vegetable oils. Biotechnol. Lett., 30, 441–444.
Keywords: Astaxanthin; Direct extraction; Green process; Haematococcus pluvialis; Vegetable oil
Strain(s): 144 
PubMed: 17972016
DOI: 10.1007/s10529-007-9578-0
Kang, Y.-H., Park, C.-S., Han, M.-S. 2012 Pseudomonas aeruginosa UCBPP-PA14 a useful bacterium capable of lysing Microcystis aeruginosa cells and degrading microcystins. J. Appl. Phycol., 24, 1517-1525.
Keywords: Microcystis aeruginosa; Microcystins; Algicidal bacteria; Pseudomonas aeruginosa
Strain(s): 4494298 
DOI: 10.1007/s10811-012-9812-6
Kang, Y-H., Kang, S-K., Park, C-S., Joo, J-H., Lee, J-W., Han, M-S. 2016 Use of lactic acid bacteria as a biological agent against the cyanobacterium Anabaena flos-aquae. J. Appl. Phycol., 28, 1747-1757.
Keywords: Lactic acidbacteria; Cyanobacteriacidalbacteria; Anabaena flos-aquae; Biological control
Strain(s): 7594298 
DOI: 10.1007/s10811-015-0701-7
Kania, K., Zienkiewicz, M., Drożak, A. 2020 Stable transformation of unicellular green alga Coccomyxa subellipsoidea C-169 via electroporation. Protoplasma, 257, 607–611.
Keywords: Coccomyxa subellipsoidea C-169; Hygromycin B resistance; Electrotransformation; Electroporation; Stable genome transformation
Strain(s): 2166 
PubMed: 31741062
DOI: 10.1007/s00709-019-01447-2
Karan, T., Erenler, R., Altuner, Z. 2017 Isolation and molecular identification of some blue-green algae (cyanobacteria) from freshwater sites in Tokat province of Turkey. Turkish JAF Sci.Tech., 5
Keywords: Algae; 16S rRNA; Cyanobacteria; Molecular identification; Phycocyanine
Strain(s): 816 
DOI: 10.24925/turjaf.v5i11.1371-1378.1470
Kareya, M. S., Mariam, I., Shaikh, K. M., Nesamma, A. A., Jutur, P. P. 2020 Photosynthetic carbon partitioning and metabolic regulation in response to very-low and high CO2 in Microchloropsis gaditana NIES 2587. Front. Plant Sci., 11, 981 (article ID).
Keywords: Microchloropsis; biomass; carbon dioxide; oleaginous microalga; photosynthetic cell factories
Strain(s): 2587 
PubMed: 32719702
DOI: 10.3389/fpls.2020.00981
Karlsson, K. 2005 Liquid chromatotraphy - mass spectrometry in distribution and bioaccumulation studies of toxic cyanopeptides. PhD thesis, Åbo Akademi University, Turku, Finland, 62 pp.
Strain(s): 107 
Karpf, S., Riche, C. T., Di Carlo, D., Goel, A., Zeiger, W. A., Suresh, A., Portera-Cailliau, C., Jalali, B. 2020 Spectro-temporal encoded multiphoton microscopy and fluorescence lifetime imaging at kilohertz frame-rates. Nat. Commun., 11, 2062 (article ID).
Strain(s): 48 
PubMed: 32346060
DOI: 10.1038/s41467-020-15618-w
Kasai, F., Arts, M. T. 1998 The interactive effects of UV-B radiation and a herbicide on uptake and allocation of carbon in two strains of the green alga Scenedesmus. Aquat. Ecol., 31, 261-272.
Keywords: herbicide tolerance; photosynthesis; phytoplankton; simetryn; triazine herbicides; ultraviolet radiation
Strain(s): 802 
DOI: 10.1007/BF02493513
Kasai, F., Hanazato, T. 1995 Genetic changes in phytoplankton communities exposed to the herbicide simetryn in outdoor experimental ponds. Arch. Environ. Contam. Toxicol., 28, 154-160.
Strain(s): 797798799800801802 
DOI: 10.1007/BF00217610
Kasai, F., Hatakeyama, S. 1993 Herbicide susceptibility in two green algae, Chlorella vulgaris and Selenastrum capricornutum. Chemosphere, 27, 899-904.
Strain(s): 35227 
DOI: 10.1016/0045-6535(93)90019-2
Kasai, F., Hatakeyama, S. 1996 Changes in herbicide susceptibility of algae in a river running through an agricultural region. Ecol. Chem. (St.Petersburg), 5, 292-296.
Keywords: algal community; herbicide; simetryn; pretilachlor; pollution; effects
Strain(s): 803804805 
Kasai, F., Ichimura, T. 1986 Morphological variabilities of three closely related mating groups of Closterium ehrenbergii Meneghini (Chlorophyta). J. Phycol., 22, 158-168.
Keywords: cell shape and size; clonal culture; Closterium ehrenbergii; mating group; morphological variability; statistical analysis
Strain(s): 171228229 
DOI: 10.1111/j.1529-8817.1986.tb04159.x
Kasai, F., Ichimura, T. 1990 Temperature optima of three closely related mating groups of the Closterium ehrenbergii (Chlorophyta) species complex. Phycologia, 29, 396-402.
Strain(s): 228229 
DOI: 10.2216/i0031-8884-29-4-396.1
Kasai, F., Takamura, N., Hatakeyama, S. 1993 Effects of simetryne on growth of various freshwater algal taxa. Environ. Pollut., 79, 77-83.
Strain(s): 35447377102137151230231255275280298 
DOI: 10.1016/0269-7491(93)90180-V
Kashem, MA., Kimoto, K., Iribe, Y., Suzuki, M. 2019 Development of microalgae biosensor chip by incorporating microarray oxygen sensor for pesticides sensing. Biosensors, 9, 133 (article ID).
Keywords: biosensor chip; fluorescence oxygen sensor; microalgae; pesticides
Strain(s): 35 
PubMed: 31726653
DOI: 10.3390/bios9040133
Kashino, Y., Enami, I., Satoh, K., Katoh, S. 1990 Immunological cross-reactivity among corresponding proteins of photosystems I and II from widely divergent photosynthetic organisms. Plant Cell Physiol., 31, 479-488.
Keywords: antiserum; cross-reactivity; immunoblotting; photosystem; protein
Strain(s): 209321382235 
DOI: 10.1093/oxfordjournals.pcp.a077935
Kashiyama Y., Yokoyama A., Kinoshita Y., Shoji S., Miyashiya H., Shiratori T., Suga H., Ishikawa K., Ishikawa A., Inouye I., Ishida K., Fujinuma D., Aoki K., Kobayashi M., Nomoto S., Mizoguchi T., Tamiaki H. 2012 Ubiquity and quantitative significance of detoxification catabolism of chlorophyll associated with protistan herbivory. Proc. Nati. Acad. Sci. U. S. A., 109, 17328-17335.
Keywords: phototoxicity of chlorophylls; microbial herbivory; phagocytosis; biodiversity of eukaryotes; microbial loop
Strain(s): 281 
PubMed: 22949677
DOI: 10.1073/pnas.1207347109
Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910.
Strain(s): 8254274286324331353381494623624997101210131015132013301333133413351372137713881390139613971408143814391441186819642008214221442149230023052325241124332498250225662584258625892590267728783374360437753876 
PubMed: 30809012
DOI: 10.1038/s41396-019-0377-0
Kataoka, H. 2019 Quantitative analysis of tip growth, phototropic responses, and other blue light-dependent photoresponses of Vaucheria. In Phototropism, Part of the Methods in Molecular Biology book series, Ed. by Yamamoto, K. T., Humana Press, New York, NY, 1924, pp. 83-120.
Keywords: Apical expansion; Aureochrome; Blue light; Branching; Ca2+ ion; Coenocyte; Lightgrowth response; Negative phototropism; Polarotropism; Positive phototropism; Split-field illumination method; Unilateral illumination method; Vaucheria
Strain(s): 26142615 
PubMed: 30694469
DOI: 10.1007/978-1-4939-9015-3_8
Kataoka, T., Homma, T., Nakano, S., Hodoki, Y., Ohbayashi, K., Kondo, R. 2013 PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis. Harmful Algae, 23, 46-54.
Keywords: Microcystis aeruginosa; Quantitative PCR; 16S-23S rDNA ITS fegion; Selective detection; Intra-species variation
Strain(s): 4487909810110210310711111229860410621070 
DOI: 10.1016/j.hal.2012.12.003
Kato, A., Morita, N., Hiratsuka, T., Suda, S. 2009 Recent introduction of a freshwater red alga Chantransia macrospora (Batrachospermales, Rhodophyta) to Okinawa, Japan. Aquat. Invasions, 4, 567-574.
Keywords: Audouinella; Batrachospermum; Chantransia macrospora; freshwater algae; introduced species; macroalgae
Strain(s): 2636 
DOI: 10.3391/ai.2009.4.4.1
Kato, A., Obokata, J., Sasaki, K. 1981 Mating type interaction in Closterium peracerosum-strigosum-littorale: mating induced protoplast release. Plant Cell Physiol., 22, 1215-1222.
Keywords: Closterium peracerosum-strigosum-littorale; conjugation; disruped cell; mating type interaction; protoplast release
Strain(s): 6465 
DOI: 10.1093/oxfordjournals.pcp.a076273
Kato, A., Ohmura, K., Kanazawa, H., Sasaki, K. 1983 Natural and artificial production of protoplasts from heterothallic and homothallic Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 7-15.
Strain(s): 6465 
Kato, A., Sasaki, K. 1983 Effects of tunica-mycin on sexual reproduction in heterothallic strains of Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 1-6.
Strain(s): 6465 
Kato, S., Higuchi, S., Kondo, Y., Kitano, S., Nozaki, H., Tanaka, J. 2005 Rediscovery of the wild-extinct species Nitellopsis obtusa (Charales) in Lake Kawaguchi, Japan. J. Jpn. Bot., 80, 84-91.
Keywords: Charales; Nitellopsis; rbcL gene; rediscovery; wild-extinct species
Strain(s): 1638 
Kato, S., Sakayama, H., Sano, S., Kasai, F., Watanabe, M. M., Tanaka, J., Nozaki, H. 2008 Morphological variation and intraspecific phylogeny of the ubiquitous species Chara braunii (Charales, Charophyceae) in Japan. Phycologia, 47, 191-202.
Keywords: aquatic habitat; Chara braunii; Charales; Charophyceae; intergenic spacer region; intraspecific phylogeny; morphological variation, rbcL gene
Strain(s): 15861587158815891590159115931604 
DOI: 10.2216/07-27.1
Kato, T., Watanabe, M. F., Watanabe M. 1991 Allozyme divergence in Microcystis (Cyanophyceae) and its taxonomic inference. Algol. Stud., 64, 129-140.
Keywords: cyanophytes/cyanobacteria; Microcystis; allozyme divergence; allozyme genotype; allozyme study; cell size; molecular taxonomy
Strain(s): 105510581061106310641067106810701071107410771079108110841086109010911093109510971098 
Kato, T., Watanabe, M. F., Watanabe, M., Hara, Y. 1991 Allozyme genotype and toxin omposition of the Microcystis strains from Lake Okutama-ko (1). Bull. Natn. Sci. Mus., Tokyo, Ser. B 17, 1-4.
Strain(s): 11401141114511521159116011611163 
Kato, Y., Imamura, N., 2008 Effect of calcium ion on uptake of amino acids by symbiotic Chlorella F36-ZK isolated from Japanese Paramecium bursaria. Plant Sci., 174, 88-96.
Keywords: Paramecium bursaria; Chlorella; Calcium; Divalent cation; Amino acid transport; Symbiosis
Strain(s): 22721572540 
DOI: 10.1016/j.plantsci.2007.10.001
Kato, Y., Ueno, S., Imamura, N. 2006 Studies on the nitrogen utilization of endosymbiotic algae isolated from Japanese Paramecium bursaria. Plant Sci., 170, 481-486.
Keywords: Endosymbiont; Paramecium bursaria; Nitrogen utilization; Chlorella
Strain(s): 22725402541 
DOI: 10.1016/j.plantsci.2005.09.018
Katoh, H., Furukawa, J., Tomita-Yokotani, K. and Nishi 2012 Isolation and purification of an axenic diazotrophic drought-tolerant cyanobacterium, Nostoc commune, from natural cyanobacterial crusts and its utilization for field research on soils polluted with radioisotopes. Biochim. Biophys. Acta-Bioenerg., 18, 1499-1505.
Keywords: Cyanobacterium; Nostoc commune; Desiccation; Radiation; Space agriculture
Strain(s): 2114 
PubMed: 22417797
DOI: 10.1016/j.bbabio.2012.02.039
Katoh, H., Shiga, S., Nakahira, Y., Ohmori, M. 2003 Isolation and characterization of drought-tolerant cyanobacterium Nostoc sp. HK-01. Microbes Environ., 18, 82-88.
Keywords: cyanobacterium; drought-tolerance; hormogonia; Nostoc
Strain(s): 2109 
DOI: 10.1264/jsme2.18.82
Katoh, T., Gantt, E. 1979 Photosynthetic vesicles with bound phycobilisomes from Anbaena variabilis. Biochim. Biophys. Acta, 546, 383-393.
Strain(s): 2093 
DOI: 10.1016/0005-2728(79)90075-6
Katoh, T., Hirokawa, T., Miyachi, S. 1958 Effect of pre-illumination upon the Hill reaction in Chlorella cells. J. Biochem., 45, 907-912.
Strain(s): 2170 
Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. 2015 Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. Plant Syst. Evol., 301, 1725-1733.
Keywords: Volvocales; Divergent actin
Strain(s): 3515465767173374 
DOI: 10.1007/s00606-014-1187-5
Kato-Minoura, T., Okumura, M., Hirono, M., Kamiya, R. 2003 A novel family of unconventional actins in Volvocalean algae. J. Mol. Evol., 57, 555-561.
Keywords: Chlamydomonas; phylogeny; Volvocales
Strain(s): 158351546569 
PubMed: 14738314
DOI: 10.1007/s00239-003-2509-3
Katsuda, T., Lababpour, A., Shimahara, K., Katoh, S. 2004 Astaxanthin production by Haematococcus pluvialis under illumination with LEDs. Enzyme Microb. Technol., 35, 81-86.
Keywords: astaxanthin; light emitting diode; wavelength; accumulation of astaxanthin
Strain(s): 144 
DOI: 10.1016/j.enzmictec.2004.03.016
Katsuda, T., Shimahara, K., Shiraishi, H., Yamagami, K., Ranjbar, R., Katoh, S. 2006 Effect of flashing light from blue light emitting diodes on cell growth and astaxanthin production of Haematococcus pluvialis. J. Biosci. Bioeng., 102, 442-446.
Keywords: flashing light; blue light emitting diode; astaxanthin; Haematococcus pluvialis
Strain(s): 144 
PubMed: 17189172
DOI: 10.1263/jbb.102.442
Katsuda, T., Shiraishi, H., Ishizu, N., Ranjbar, R., Katoh, S. 2008 Effect of light intensity and frequency of flashing light from blue light emitting diodes on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 105, 216-220.
Keywords: flashing light; blue light emitting diode; light intensity; astaxanthin; Haematococcus pluvialis
Strain(s): 144 
PubMed: 18397771
DOI: 10.1263/jbb.105.216
Katsumata, M., Ikushima, Y., Bennett, K., Sato, Y., Takeuchi, A., Tatarazako, N., Hakamata, T. 2017 Validation of rapid algal bioassay using delayed fluorescence in an interlaboratory ring study. Sci. Total Environ., 605-606, 842-851.
Keywords: Chemical toxicity test; Growth inhibition; Alga; Delayed fluorescence; Surrogate of biomass
Strain(s): 35 
PubMed: 28683428
DOI: 10.1016/j.scitotenv.2017.06.228
Katsumata, M., Koike, T., Nishikawa, M., Kazumura, K., Tsuchiya, H. 2006 Rapid ecotoxicological bioassay using delayed fluorescence in the green alga Pseudokirchneriella subcapitata. Water Res., 40, 3393-3400.
Keywords: Delayed fluorescence; Algal growth inhibition test; Pseudokirchneriella subcapitata; Simazine (CAT); 3,5-dichlorophenol (3,5-DCP)
Strain(s): 35 
PubMed: 16970970
DOI: 10.1016/j.watres.2006.07.016
Kawachi, M., Kataoka, T., Sato, M., Noël, M.-H., Kuwata, A., Demura, M., Yamaguchi, H. 2016 Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community. Gene, 576, 708-716.
Keywords: 18S rRNA gene; 454 pyros equencing; Cryopreservation; Photosynthetic picoeukaryotes
Strain(s): 76519662842 
PubMed: 26506442
DOI: 10.1016/j.gene.2015.10.033
Kawachi, M., Nakayama, T., Kayama, M., Nomura, M., Miyashita, H., Bojo, O., Rhodes, L., Sym, S., Pienaar, R. N., Probert, I., Inouye, I., Kamikawa, R. 2021 Rappemonads are haptophyte phytoplankton. Curr. Biol., 31, 2395-2403.
Strain(s): 3900 
PubMed: 33773100
DOI: 10.1016/j.cub.2021.03.012
Kawafune K., Hongoh, Y., Hamaji, T ., Sakamoto, T., Kurata, T., Hirooka, S., Miyagishima, S., Nozaki, H. 2015 Two different rickettsial bacteria invading Volvox carteri. PLoS One, 10, e0116192 (article ID).
Strain(s): 397398732733866 
PubMed: 25671568
DOI: 10.1371/journal.pone.0116192
Kawafune, K., Hongoh, Y., Hamaji, T., Nozaki, H. 2012 Molecular identification of rickettsial endosymbionts in the non-phagotrophic Volvocalean green algae. PLoS One, 7, e31749 (article ID).
Strain(s): 425577 
PubMed: 22363720
DOI: 10.1371/journal.pone.0031749
Kawafune, K., Sato, M., Toyooka, K., Nozaki, H. 2013 Ultrastructure of the rickettsial endosymbiont "MIDORIKO" in the green alga Carteria cerasiformis as revealed by high-pressure freezing and freeze-substitution fixation. Protoplasma, 250, 949-953.
Keywords: Transmission electron microscopy; High-pressure freezing and freeze-substitution fixation; Rickettsiaceae; Endosymbiont; Carteria cerasiformis
Strain(s): 424426 
PubMed: 23178999
DOI: 10.1007/s00709-012-0469-4
Kawahara, K., Sagehashi, M., Fujii, T., Fujita, H., Hu, H.-Y., Sakoda, A. 2011 Potential of a green alga Botryococcus braunii for simultaneous water purification and biofuel production under open-air condition. J. Water Environ. Technol., 9, 29-37.
Keywords: biofuel production; Botryococcus braunii; Microcystis aeruginosa; water purification
Strain(s): 878361090 
DOI: 10.2965/jwet.2011.29
Kawahara, T., Kumaki, Y., Kamada, T., Ishii, T., Okino, T. 2009 Absolute configuration of chlorosulfolipids from the chrysophyta Ochromonas danica. J. Org. Chem., 74, 6016-6024.
Strain(s): 2142 
PubMed: 19627129
DOI: 10.1021/jo900860e
Kawahata, C., Yamamuro, M., Shiraiwa, Y. 2013 Changes in alkaline band formation and calcification of corticated charophyte Chara globularis. SpringerPlus, 2, 85 (article ID).
Keywords: Chara corallina; Chara globularis; Alkaline band; Acid band; SEM
Strain(s): 1585 
PubMed: 23543879
DOI: 10.1186/2193-1801-2-85
Kawai, H., Inouye, I. 1989 Flagellar autofluorescence in forty-four chloraphyll c-containig algae. Phycologia, 28, 222-227.
Strain(s): 515161 
DOI: 10.2216/i0031-8884-28-2-222.1
Kawai, H., Maeba, S., Sasaki, H., Okuda, K., Henry, E. C. 2003 Schizocladia ischiensis: a new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae. Protist, 154, 211-228.
Strain(s): 1044 
PubMed: 13677449
DOI: 10.1078/143446103322166518
Kawai, S., Araki, S., Kodama, Y. 2017 No mutual symbiosis following infection of algae-free Paramecium bursaria with symbiotic algae from Mayorella viridis. Symbiosis, 75, 51-59.
Keywords: Algae; Endosymbiosis; Mayorella viridis; Paramecium bursaria; Phalloidin
Strain(s): 692 
DOI: 10.1007/s13199-017-0517-0
Kawamura, K., Sumii, K., Matsumoto, M., Nakase, D., Kosaki, Y., Ishikawa, M. 2018 Determining the optimal cultivation strategy for microalgae for biodiesel production using flow cytometric monitoring and mathematical modeling. Biomass Bioenerg., 117, 24-31.
Keywords: Biofuel; Logistic equation; Optimal cultivation; Simulation model; Triacylglycerols
Strain(s): 2168 
DOI: 10.1016/j.biombioe.2018.07.005
Kawanobe, K. 1990 A report in the completion of the research work [Chôsa kenkyû syûryô hôkoku]. Unpublished report in Kankyô Hozen Kyôkai, 3 pp. (in Japanese).
Strain(s): 35227 
Kawasaki, S., Yoshida, R., Ohkoshi, K., Toyoshima, H., 2020 Coelastrella astaxanthina sp. nov. (Sphaeropleales, Chlorophyceae), a novel microalga isolated from an asphalt surface in midsummer in Japan. Phycol. Res., 68, 107-114.
Keywords: astaxanthin; dry conditions; photo-oxidative stress; Scenedesmaceae; terrestrial microalgae
Strain(s): 2151 
DOI: 10.1111/pre.12412
Kawase, Y.2, Imamura, S., Tanaka, K. 2017 A MYB-type transcription factor, MYB2, represses light-harvesting protein genes in Cyanidioschyzon merolae. FEBS Lett., 591, 2439-2448.
Keywords: dark acclimation; MYB-type transcription factor; phycobilisome
Strain(s): 3377 
PubMed: 28748638
DOI: 10.1002/1873-3468.12763
Kaya, K., Sano, T. 1998 A photodetoxifi-cation mechanism of the cyanobacterial hepatotoxin microcystin-LR by ultraviolet irradiation. Chem. Res. Toxicol., 11, 159-163.
Strain(s): 88 
Kaya, K., Sano, T. 2016 Chapter 18. Cyanobacterial retinoids. In Handbook of cyanobacterial monitoring and cyanotoxin analysis, Eds. byMeriluoto, J., Spoof, L., Codd, G. A., John Wiley & Sons, Ltd. pp. 173-178.
Strain(s): 364445462045126101222 
DOI: 10.1002/9781119068761.ch18
Kaya, K., Shiraishi, F., Uchida, H., Sano, T. 2011 A novel retinoic acid analogue, 7-hydroxy retinoic acid, isolated from cyanobacteria. Biochim. Biophys. Acta-Gen. Subj., 1810, 414-419.
Keywords: 7-hydroxy retinoic acid; RAR agonistic activity; cyanobacteria; UV stability
Strain(s): 444546512610931 
PubMed: 21145941
DOI: 10.1016/j.bbagen.2010.11.009
Kaya, K., Watanabe, M. M. 1990 Microcystin composition of an axenic clonal strain of Microcystis viridis and Microcystis viridis-containing waterblooms in Japanese freshwaters. J. Appl. Phycol., 2, 173-178.
Keywords: axenic Microcystis viridis; microcystin; toxic waterbloom; Japanese lakes
Strain(s): 102 
DOI: 10.1007/BF00023379
Kayama, M., Chen, J.-F., Nakada, T., Nishimura, Y., Shikanai, T., Azuma, T., Miyashita, H., Takaichi, S., Kashiyama, Y., Kamikawa, R. 2020 A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems. BMC Biol., 18, 126 (article ID).
Keywords: Carotenoid; NADPH; Non-photosynthetic plastid; Plastoquinol; Plastid terminal oxidase; Transient RNA interference knockdown
Strain(s): 4405 
PubMed: 32938439
DOI: 10.1186/s12915-020-00853-w
Kayano, K., Saruwatari, K., Kogure, T., Shiraiwa, Y. 2011 Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in in vitro CaCO3 crystallization. Mar. Biotechnol., 13, 83-92.
Keywords: Acid polysaccharide; Biomineralization; Coccolith; Coccolith polysaccharide; Calcium carbonate crystalization; Emiliania huxleyi
Strain(s): 837 
PubMed: 20336339
DOI: 10.1007/s10126-010-9272-4
Kayano, K., Shiraiwa, Y. 2009 Physiological regulation of coccolith polysaccharide production by phosphate availability in the coccolithophorid Emiliania huxleyi. Plant Cell Physiol., 50, 1522-1531.
Strain(s): 837 
PubMed: 19587028
DOI: 10.1093/pcp/pcp097
Keawtawee, T., Fukami, K., Songsangjinda, P., Muangyao, P. 2011 Isolation and characterization of Noctiluca-killing bacteria from a shrimp aquaculture pond in Thailand. Fish. Sci., 77, 657-664.
Keywords: Algicidal bacteria; Noctiluca scintillans; HABs; Shrimp aquacluture
Strain(s): 16 
DOI: 10.1007/s12562-011-0373-4
Keeling, p. J., Palmer, J. D. 2001 Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc. Nati. Acad. Sci. U. S. A., 98, 10745-10750.
Keywords: phylogeny; protein insertions; apicomplexa; recombination
Strain(s): 484 
PubMed: 11526220
DOI: 10.1073/pnas.191337098
Kerfeld, CA., Melnicki, MR., Sutter M., Dominguez-Martin, MA. 2017 Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs. New Phytol., 215, 937-951.
Keywords: carotenoids; carotenoproteins; cyanobacteria; nonphotochemical quenching; photoprotection; phylogenomics; protein structure; singlet oxygen (1O2) quenching
Strain(s): 3981843 
PubMed: 28675536
DOI: 10.1111/nph.14670
Keshari, N., Gugger, M., Zhu, T., Lu, X. 2019 Compatible solutes profiling and carbohydrate feedstock from diversified cyanobacteria. Algal Res., 43, 101637 (article ID).
Keywords: Cyanobacteria; Compatible solutes; Glucosylglycerol (GG); Sucrose; Trehalose; Glycogen
Strain(s): 315921031 
DOI: 10.1016/j.algal.2019.101637
Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J., Alverson, A. J. 2014 Transcriptomic insights into the life history of Bolidophytes, the sister lineage to diatoms. J. Phycol., 50, 977-983.
Keywords: Bolidomonas; diatoms; diplontic; haplodiplontic; life cycle; Parmales; transcriptome
Strain(s): 2682 
PubMed: 26988780
DOI: 10.1111/jpy.12222
Kessler, E., Huss, V. A. R. 1992 Comparative physiology and biochemistry and taxonomic assignment of the Chlorella (Chlorophyceae) strains of the Culture Collection of the University of Texas at Austin. J. Phycol., 28, 550-553.
Keywords: chemotaxonomy; Chlorella; Chlorophyta; UTEX culture collection; utilization for research and biotechnology
Strain(s): 6866872150215121602163216921752176 
DOI: 10.1111/j.0022-3646.1992.00550.x
Kettler, G., Martiny, A. C., Huang, K., Zucker, J., Coleman, M. L., Rodrigue, S., Chen, F., Lapidus, A., Ferriera, S., Johnson, J., Steglich, C., Church, G. M., Richardson, P., Chisholm, S. W. 2007 Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS One, 3, e231 (article ID).
Strain(s): 28813376 
PubMed: 18159947
DOI: 10.1371/journal.pgen.0030231
Khan, S. M. M. K., Arikawa, M., Omura, G., Suetomo, Y., Kakuta, S., Suzaki, T. 2003 Axopodial contraction in the heliozoon Raphidiophrys contractilis requires extracellular Ca2+. Zool. Sci., 20, 1367-1372.
Keywords: contraction; microtubules; contractile tubules; heliozoa; calcium
Strain(s): 2498 
DOI: 10.2108/zsj.20.1367
Khan, S. M. M. K., Arikawa, M., Suzaki, T. 2005 Toxic effect of heavy metal ions on the axopodia of the heliozoon Raphidiophrys contractilis. Jpn. J. Protozool., 38, 44-45.
Strain(s): 2498 
Khan, S. M. M. K., Yoshimura, C., Arikawa, M., Omura, G., Nishiyama, S., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Axopodial degradation in the heliozoon Raphidiophrys contractilis: a novel bioassay system for detecting heavy metal toxicity in an aquatic environment. Environ. Sci., 13, 193-200.
Strain(s): 2498 
PubMed: 17095991
Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y. 2017 Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex. Chemosphere, 175, 200-209.
Keywords: Sinking rate; Thalassiosira pseudonana; Skeletonema marinoi-dohrnii complex; Diuron
Strain(s): 324 
PubMed: 28222374
DOI: 10.1016/j.chemosphere.2017.02.054
Khoo, K. S., Lee, S. Y., Ooi, C. W., Fu, X., Miao, X., Ling, T. C., Show, P. L. 2019 Recent advances in biorefinery of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 288, 121606 (article ID).
Keywords: Astaxanthin; Haematococcus pluvialis; Cultivation; Pretreatment; Biorefinery
Strain(s): 144 
PubMed: 31178260
DOI: 10.1016/j.biortech.2019.121606
Ki, J.-S., Han, M.-S. 2007 Nuclear rDNA and chloroplast rbcL, rbcS and IGS sequence data, and their implications from the Japanese, Korean, and North American harmful algae, Heterosigma akashiwo (Raphidophyceae). Environ. Res., 103, 299-304.
Keywords: Heterosigma akashiwo; blooms; nuclear rDNA; rbcS; IGS
Strain(s): 293 
DOI: 10.1016/j.envres.2006.08.014
Ki, J.-S., Han, M.-S. 2007 Rapid molecular identification of the harmful freshwater dinoflagellate Peridinium in various life stages using genus-specific single-cell PCR. J. Appl. Phycol., 19, 467-470.
Keywords: dinoflagellate cyst; planozygote; rDNA
Strain(s): 495 
DOI: 10.1007/s10811-007-9157-8
Kim, B.-H., Oh, H.-M., Lee, Y.-K., Choi, G.-G., Ahn, C.-y., Yoon, B.-D., Kim, H.-S., 2006 Simple method for RNA preparation from cyanobacteria. J. Phycol., 42, 1137-1141.
Keywords: bead–phenol–chloroform method; cyanobacteria; RNA extraction; xanthogenate–SDS–phenol method
Strain(s): 3339230 
DOI: 10.1111/j.1529-8817.2006.00263.x
Kim, B.-H., Ramanan, R., Cho, D.-H., Choi, G.-G., La, H.-J., Ahn, C.-Y., Oh, H.-M., Kim, H.-S. 2012 Simple, rapid and cost-effective method for high quality nucleic acids extraction from different strains of Botryococcus braunii. PLoS One, 7, e37770 (article ID).
Strain(s): 836 
PubMed: 22662217
DOI: 10.1371/journal.pone.0037770
Kim, B.-H., Ramanan, R., Kang, Z., Cho, D.-H., Oh, H.-M., Kim, H.-S. 2016 Chlorella sorokiniana HS1, a novel freshwater green algal strain, grows and hyperaccumulates lipid droplets in seawater salinity. Biomass Bioenerg., 85, 300-305.
Keywords: Chlorella; Salt stress; Green algae; Lipid droplets; Biodiesel; Commercialization
Strain(s): 2150 
DOI: 10.1016/j.biombioe.2015.12.026
Kim, C.-J., Hung, Y.-H., Oh, H.-M, 2007 Factors indicating culture status during cultivation of Spirulina (Arthrospira) platensis. J. Microbiol., 45, 122-127.
Keywords: coil number; culture status; syanobacteria; floating activity; Spirulona platensis
Strain(s): 3946 
PubMed: 17483796
Kim, C.-J., Jung, Y.-H., Ahn, C.-Y., Lee, Y.-K., Oh, H.-M. 2010 Adsorption of turbid materials by the cyanobacterium Phormidium parchydematicum. J. Appl. Phycol., 22, 181-186.
Keywords: Chlorella vulgaris; Clay; Cyanobacteria; Phormidium parchydematicum; Turbid material
Strain(s): 39 
DOI: 10.1007/s10811-009-9440-y
Kim, D., Li, W. C., Matsuyama, Y., Cho, K., Yamasaki, Y., Takeshita, S., Yamaguchi, K., Oda, T. 2019 Extremely high level of reactive oxygen species (ROS) production in a newly isolated strain of the dinoflagellate Karenia mikimotoi. Eur. J. Phycol., 54, 632-640.
Keywords: Algae; harmful dinoflagellate; hydrogen peroxide; Karenia mikimotoi; reactive oxygen species (ROS); rotifer toxicity
Strain(s): 2411 
DOI: 10.1080/09670262.2019.1632936
Kim, D., Nakamura, A., Okamoto, T., Komatsu, N., Oda, T., Ishimatsu, A., Muramatsu, T. 1999 Toxic potential of the raphidophyte Olisthodiscus luteus: mediation by reactive oxygen species. J. Plankton Res., 21, 1017-1027.
Strain(s): 15 
DOI: 10.1093/plankt/21.6.1017
Kim, D., Oda, T., Ishimatsu, A., Muramatsu, T. 2000 Galacturonic-acid-induced increase of superoxide production in red tide phytoplankton Chattonella marina and Heterosigma akashiwo. Biosci. Biotechnol. Biochem., 64, 911-914.
Keywords: red tide plankton; Chattonella marina; Heterosigma akashiwo; galacturonic acid; reactive oxygen species
Strain(s): 6 
PubMed: 10830520
DOI: 10.1271/bbb.64.911
Kim, D., Okamoto, T., Oda, T., Tachibana, K., Lee, K. S., Ishimatsu, A., Matsuyama, Y., Honjo, T., Muramatsu, T. 2001 Possible involvement of the glycocalyx in the ichthyotoxicity of Chattonella marina (Raphidophyceae): immunological approach using antiserum against cell surface structures of the flagellate. Mar. Biol., 139, 625-632.
Strain(s): 615 
DOI: 10.1007/s002270100614
Kim, D., Sato, Y., Oda, T., Muramatsu, T., Matsuyama, Y., Honjo, T. 2000 Specific toxic effect of dinoflagellate Heterocapsa circularisquama on the rotifer Brachionus plicatilis. Biosci. Biotechnol. Biochem., 64, 2719-2722.
Keywords: red tide; Heterocapsa circularisquama; rotifer; toxicity; dinoflagellate
Strain(s): 6 
PubMed: 11210146
DOI: 10.1271/bbb.64.2719
Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2004 Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua. Aquat. Microb. Ecol., 35, 57-64.
Keywords: Cell cycles; Chattonella antiqua; Hydrogen peroxide; NIES culture tank; Reactive oxygen species; Red tide; Superoxide anion
Strain(s): 1 
DOI: 10.3354/ame035057
Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2005 Changes in O2- and H2O2 production by Chattonella antiqua during diel vertical migration under nutrient stratification. Aquat. Microb. Ecol., 39, 183-191.
Keywords: Chattonella antiqua; Diel vertical migration; Hydrogen peroxide; Nutrient stratification; Reactive oxygen species; Superoxide anion
Strain(s): 1 
DOI: 10.3354/ame039183
Kim, E., Graham, L. E. 2008 EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS One, 3, e0002621 (article ID).
Strain(s): 1335 
PubMed: 18612431
DOI: 10.1371/journal.pone.0002621
Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466.
Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution
Strain(s): 93695513331335 
PubMed: 16982820
DOI: 10.1093/molbev/msl120
Kim, E., Wilcox, L. W., Fawley, M. W., Graham, L. E. 2006 Phylogenetic position of the green flagellate Mesostigma viride based on alpha-tubulin and beta-tubulin gene sequences. Int. J. Plant Sci., 167, 873-883.
Keywords: Mesostigma; Coleochaete; Pterosperma; Nephroselmis; Mantoniella; Streptophyta; Viridiplantae; α-tubulin; β-tubulin
Strain(s): 955 
DOI: 10.1086/504391
Kim, J. I., Shin, W., Treimer, R. E. 2010 Multigene analyses of photosynthetic euglenoids and new family, Phacaceae (Euglenales). J. Phycol., 46, 1278-1287.
Keywords: discoid chloroplast; Euglenaceae; Euglenales; multigene analysis; Phacaceae; phylogeny; synapomorphy
Strain(s): 381 
DOI: 10.1111/j.1529-8817.2010.00910.x
Kim, K., Yoon, Y., Cho, H., Hwang, S. J 2020 Molecular probes to evaluate the synthesis and production potential of an odorous compound (2-methylisoborneol) in cyanobacteria. Int. J. Environ. Res. Public Health, 17, 1933 (article ID).
Keywords: 2-Methylisoborneol (2-MIB); cyanobacteria; molecular probes; mibC; real-time PCR
Strain(s): 19512824 
PubMed: 32188031
DOI: 10.3390/ijerph17061933
Kim, M., Shin, B., Lee, J., Park, H. Y., Park, W. 2019 Culture-independent and culture-dependent analyses of the bacterial community in the phycosphere of cyanobloom-forming Microcystis aeruginosa. Sci Rep, 9, 20416 (article ID).
Strain(s): 298 
PubMed: 31892695
DOI: 10.1038/s41598-019-56882-1
Kim, M.-C., Yoshinaga, I., Imai, I., Nagasaki, K., Itakura, S., Ishida, Y. 1998 A close relationship between algicidal bacteria and termination of Heterosigma akashiwo (Raphidophyceae) blooms in Hiroshima Bay, Japan. Mar. Ecol. Prog. Ser., 170, 25-32.
Keywords: algicidal bacteria; marine bacteria; marine phytoplankton; red tide; bloom; Raphidophyceae; Heterosigma akashiwo
Strain(s): 1 
DOI: 10.3354/meps170025
Kim, T. Y., Hong, J. E., Park, H. M., Lee, U. J., Lee, S-Y. 2020 Decontamination of low-level contaminated water from radioactive cesium and cobalt using microalgae. J. Radioanal. Nucl. Chem., 323, 903-908.
Keywords: Radionuclide; Microalgae; Cobalt; Cesium; Decontamination; Biosorption
Strain(s): 2860 
DOI: 10.1007/s10967-019-07008-4
Kim, Y. E., Matter, I. A., Lee, N., Jung, M., Lee, Y. C., Choi, S. A., Lee, S. Y., Kim, J. R., Oh, Y. K. 2020 Enhancement of astaxanthin production by Haematococcus pluvialis using magnesium aminoclay nanoparticles. Bioresour. Technol., 307, 123270 (article ID).
Keywords: Haematococcus pluvialis; Astaxanthin; Nanoparticle; Aminoclay; Lipid
Strain(s): 144 
PubMed: 32253126
DOI: 10.1016/j.biortech.2020.123270
Kim, Y.-S., Oyaizu, H., Matsumoto, S, Watanabe, M. M., Nozaki, H. 1994 Chloroplast small-subunit ribosomal RNA gene sequence from Chlamydomonas parkeae (Chlorophyta) : molecular phylogeny of a green alga with a peculiar pigment composition. Eur. J. Phycol., 29, 213-217.
Keywords: Chlamydomonas parkeae; Chlorophyta; chloroplast small-subunit (SSU) rRNA; phylogeny; pigment composition
Strain(s): 228254440468666 
DOI: 10.1080/09670269400650661
Kimbara, R., Isaka, N., Matsuzaki, R., Kawai-Toyooka, H., Kawachi, M., Nozaki, H. 2019 Morphological and molecular identification of the dioecious “African species Volvox rousseletii (Chlorophyceae) in the water column of a Japanese lake based on field-collected and cultured materials. PLoS One, 14, e0221632 (article ID).
Strain(s): 4336433743384339434043414342 
PubMed: 31465476
DOI: 10.1371/journal.pone.0221632
Kimpel, D. L., Togasaki, R. K., Miyachi, S. 1983 Carbonic anhydrase in Chlamydomonas reinhardtii I. Localization. Plant Cell Physiol., 24, 255-259.
Keywords: carbonic anhydrase; cell wall-less mutant; Chyamydomonas reinhardtii; periplasm; wall lysing enzyme
Strain(s): 22372238 
DOI: 10.1093/pcp/24.2.255
Kimura, B., Ishida, Y. 1986 Possible phago-trophic feeding of bacteria in a freshwater red tide Chrysophyceae Uroglena americana. Bull. Jpn. Soc. Sci. Fish., 52, 697-701.
Strain(s): 395 
Kimura, B., Ishida, Y., Kadota, H. 1986 Effect of naturally collected bacteria on growth of Uroglena americana, a freshwater red tide Chrysophyceae. Bull. Jpn. Soc. Sci. Fish., 52, 691-696.
Strain(s): 395 
Kimura, J. 2011 Screening for allelopathic activity on algal growth. Bull. Hiroshima Pref. Tech. Res. Inst., Publ. Health Environ. Center, 19, 37-46 (in Japanese).
Keywords: Microcystis; Chlorella; Nitzschia; growth inhibition; allelopathy
Strain(s): 88487642 
Kimura, K., Tomaru, Y. 2013 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. strain SS628-11 isolated from western Japan. PLoS One, 8, e82013 (article ID).
Strain(s): 3718 
PubMed: 24358139
DOI: 10.1371/journal.pone.0082013
Kimura, K., Tomaru, Y. 2017 Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses. Aquat. Microb. Ecol., 79, 79-83.
Keywords: Water temperature; Water salinity; Host-virus interactions; Diatom lysis
Strain(s): 37143716 
DOI: 10.3354/ame01818
Kimura, S., Yamada, T., Ban, S., Koyama, M., Toda, T. 2019 Nutrient removal from anaerobic digestion effluents of aquatic macrophytes with the green alga, Chlorella sorokiniana. Biochem. Eng. J., 142, 170-177.
Keywords: Chlorella sorokiniana; anaerobic digestion effluent; maximum algal yield; nutrient removal rate; aquatic macrophytes
Strain(s): 2173 
DOI: 10.1016/j.bej.2018.12.001
Kimura, Y., Kimura, S., Sato, S., Katho, H., Abe, T., Arai, M., Tomita-Yokotani, K. 2015 Evoluation of a cyanobacterium, Nostoc sp. HK-01, as food material for space agriculture on Mars. Biological Sciences in Space, 29, 24-31.
Keywords: Cyanobacteria; Food; Martian regolith simulant (MRS); Nostoc sp. HK-01; Radicalscavenging activity; Space Agriculture
Strain(s): 21092114 
DOI: 10.2187/bss.29.24
Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017 Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01. Biological Sciences in Space, 31, 1-8.
Keywords: compatible solute; cyanobacteria; extracellular polysaccharides; heat tolerance; life cycle of cell; Nostoc sp. HK-01
Strain(s): 2109 
DOI: 10.2187/bss.31.1
Kinoshita, E., Suzaki, T., Shigenaka, Y. 2001 The ultrastructure of contractile tubules in the heliozoan Actinophrys sol and their possible involvement in rapid axopodial contraction. J. Eucaryot. Microbiol., 48, 519-526.
Keywords: Axopodium; Ca2+-contraction; colchicine; electron microscopy
Strain(s): 2497 
PubMed: 11596916
DOI: 10.1111/j.1550-7408.2001.tb00187.x
Kinoshita, E., Suzaki, T., Sugiyama, M., Shigenaka, Y. 1995 Ultrastructure and rapid axopodial contraction of a heliozoan, Raphidiophyrys contractilis sp. nov. J. Eucaryot. Microbiol., 42, 283-288.
Keywords: Contraction; Heliozoa; microtubule pattern; new species; Raphidiophyrys; silicic scale; X-ray microanalysis
Strain(s): 24983374 
DOI: 10.1111/j.1550-7408.1995.tb01581.x
Kinugawa, K., Etoh, M., Kuba, T., Kusuda, T. 1999 A possibility of control and prevention of excessive phytoplankton growth by photochromism. J. Jpn. Soc. Wat. Environ., 22, 932-937 (in Japanese with English summary).
Keywords: photochromism; spironaphthoxazine; shielding sunlight; algal growth potential; eutrophication
Strain(s): 98 
Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017 Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities. Algal Res., 21, 213-222.
Keywords: Microalgae; Immobilized cultivation; Irradiation; Carbon dioxide; Twin-Layer; Carotenoid
Strain(s): 144 
DOI: 10.1016/j.algal.2016.10.025
Kishi, M., Kawai, M., Toda, T. 2015 Heterotrophic utilization of ethylene glycol and propylene glycol by Chlorella protothecoides. Algal Res., 11, 428-434.
Keywords: algae; Chlorella protothecoides; Ethylene glycol; Propylene glycol; Heterotrophic; pH
Strain(s): 215121682170 
DOI: 10.1016/j.algal.2015.04.020
Kishi, M., Toda, T. 2018 Carbon fixation properties of three alkalihalophilic microalgal strains under high alkalinity. J. Appl. Phycol., 30, 401–410.
Keywords: Algae; Cyanobacteria; Carbon dioxide; Alkalinity; Growth optimization
Strain(s): 392257 
DOI: 10.1007/s10811-017-1226-z
Kishi, M., Yamada, Y., Katayama, T., Matsuyama, T., Toda, T. 2020 Carbon mass balance in Arthrospira platensis culture with medium recycle and high CO2 supply. Appl. Sci., 10, 228 (article ID).
Keywords: Arthrospira; carbon dioxide; CO2 capture and utilization; mass balance; medium recycle; pH
Strain(s): 39 
DOI: 10.3390/app10010228
Kisugi, T., Okino, T. 2009 Micropeptins from the freshwater cyanobacterium Microcystis aeruginosa (NIES-100). J. Nat. Prod., 72, 777-781.
Strain(s): 100 
PubMed: 19260658
DOI: 10.1021/np800631t
Kitamura, N., Nakagawa, T., Yoshida, Y., Matsushima, H., Asada, Y. 2006 Studies on the growth control of toxic cyanobacteria by use of the water-extracts from the dead leaves of deciduous trees. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 43, 543-549.
Keywords: growth control; Microcystis aeruginosa; dead-leaves; deciduous trees; condensed tannin
Strain(s): 102 
DOI: 10.11532/proes1992.43.543
Kiyohara, T., Fujita, Y., Hattori, A., Watanabe, A. 1962 Effect of light on glucose assimilation in Tolypothrix tenuis. J. Gen. Appl. Microbiol., 8, 165-168.
Strain(s): 37 
Klemenčič, M., Funk, C. 2018 Structural and functional diversity of caspase homologues in non-metazoan organisms. Protoplasma, 255, 387-397.
Strain(s): 448432549 
PubMed: 28744694
DOI: 10.1007/s00709-017-1145-5
Ko, S. R., Lee, Y. K., Srivastava, A., Park, S. H., Ahn, C. Y., Oh, H. M. 2019 The selective inhibitory activity of a fusaricidin derivative on a bloom-Forming cyanobacterium, Microcystis sp. J. Microbiol. Biotechnol., 29, 59-65.
Keywords: Bloom control; cyanobacteria; fusaricidin; Microcystis; Paenibacillus polymyxa
Strain(s): 2394 
PubMed: 30394041
DOI: 10.4014/jmb.1804.04031
Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide,, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989.
Keywords: coherent X-ray diffraction imaging; X-ray free-electron laser; frozen-hydrated non-crystalline specimens; cryogenic X-ray diffraction experiment; structures of cells and cellular organelles
Strain(s): 2087 
PubMed: 27359147
DOI: 10.1107/S1600577516007736
Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., Nakasako, M. 2021 Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep, 11, 3877 (article ID).
Strain(s): 2087 
PubMed: 33594220
DOI: 10.1038/s41598-021-83401-y
Kobayashi, H., Ohta, S., Murao, N., Tachibana, H., Yamagata, S. 2000 Radiative transfer model for satellite remote sensing of ocean colors in coastal zones. J. Global Environ. Eng., 6, 13-31.
Keywords: equation of radiative transfer; coastal pollution; discharge of soil particle; red tide
Strain(s): 16 
DOI: 10.1117/12.411675
Kobayashi, K., Kimura, S., Togawa, E., Wada, M. 2013 Thermal expansion behavior of hydrate paramylon in the low-temperature region. Carbohydr. Polym., 91, 543-548.
Keywords: Paramylon; (1 → 3)-B-D-Glucan; Synchrotron X-ray powder diffraction; Solid-state 13C NMR; Thermal expansion; Phase transition
Strain(s): 48 
PubMed: 23121943
DOI: 10.1016/j.carbpol.2012.08.067
Kobayashi, M. 2000 In vivo antioxidant role of astaxanthin under oxidative stress in the green alga Haematococcus pluvialis. Appl. Microbilo. Biotechnol., 54, 550-555.
Strain(s): 144 
PubMed: 11092631
DOI: 10.1007/s002530000
Kobayashi, M., Hatta, K., Sugai, M. 1987 Endopolyploidy in Chlorella. Arch. Mikrobiol., 146, 309-314.
Strain(s): 2170 
DOI: 10.1007/BF00410927
Kobayashi, M., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1997 Abscisic acid-dependent algal morphogenesis in the unicellular green alga Haematococcus pluvialis. Plant Growth Regulation, 22, 79-85.
Keywords: abscisic acid; active oxygen; carotenoid; cyst formation; drought stress; Haematococcus pluvialis
Strain(s): 144 
DOI: 10.1023/A:1005862809711
Kobayashi, M., Kakizono, T., Nagai, S. 1991 Astaxanthin production by a green alga, Haematococcus pluvialis accompanied with morphological changes in acetate media. J. Ferment. Bioeng., 71, 335-339.
Strain(s): 144 
DOI: 10.1016/0922-338X(91)90346-I
Kobayashi, M., Kakizono, T., Nagai, S. 1993 Enhanced carotenoid biosynthesis by oxidative stress in acetate-induced cyst cells of a green unicellular alga, Haematococcus pluvialis. Appl. Environ. Microbiol., 59, 867-873.
Strain(s): 144 
PubMed: 16348895
DOI: 10.1128/AEM.59.3.867-873.1993
Kobayashi, M., Kakizono, T., Nagai, S. 1993 Photo-dependent astaxanthin biosynthesis in a green alga, Haematococcus pluvialis. Seibutsu-Kôgaku, 71, 233-237 (in Japanese with English summary).
Strain(s): 144 
Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S. 1992 Effects of light intensity, light quality, and illumination cycle on astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 61-63.
Strain(s): 144 
DOI: 10.1016/0922-338X(92)90271-U
Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S., Kurimura, Y., Tsuji, Y. 1997 Antioxidant role of astaxanthin in the green alga Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 48, 351-356.
Strain(s): 144 
DOI: 10.1007/s002530051
Kobayashi, M., Kakizono, T., Yamaguchi, K., Nishio, N., Nagai, S. 1992 Growth and asta-xanthin formation of Haematococcus pluvialis in heterotrophic and mixotrophic conditions. J. Ferment. Bioeng., 74, 17-20.
Strain(s): 144 
Kobayashi, M., Kurimura, Y., Kakizono, T., Nishio, N., Tsuji, Y. 1997 Morphological changes in the life cycle of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 84, 94-97.
Keywords: astaxanthin; encystment; germination; Haematococcus pluvialis; life cycle; maturation
Strain(s): 144 
DOI: 10.1016/S0922-338X(97)82794-8
Kobayashi, M., Kurimura, Y., Sakamoto, Y., Tsuji, Y. 1997 Selective extraction of astaxanthin and chlorophyll from the green alga Haematococcus pluvialis. Biotechnol. Tech., 11, 657-660.
Strain(s): 144 
DOI: 10.1023/A:1018455209445
Kobayashi, M., Kurimura, Y., Tsuji, Y. 1997 Light-independent, astaxanthin production by the green microalga Haematococcus pluvialis under salt stress. Biotechnol. Lett., 19, 507-509.
Strain(s): 144 
DOI: 10.1023/A:1018372900649
Kobayashi, M., Okada, T. 2000 Protective role of astaxanthin against u.v.-B irradiation in the green alga Haematococcus pluvialis. Biotechnol. Lett., 22, 177-181.
Keywords: antioxidant; astaxanthom; Haematococcus pluvialis oxidative stress; u.v.-B;
Strain(s): 144 
DOI: 10.1023/A:100564960983
Kobayashi, M., Todoroki, Y., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1998 Biological activities of abscisic acid analogs in the morphological change of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 85, 529-531.
Keywords: abscisic acid; astaxanthin; carotenogenesis; drought stress; encystment; plant hormone; Haematococcus pluvialis
Strain(s): 144 
DOI: 10.1016/S0922-338X(98)80076-7
Kobayashi, T. Takahara, M., Miyagishima, S, Kuroiwa, H., Sasaki, N., Ohta, N., Kuroiwa, T. 2002 Detection and localization of a chloroplast-encoded HU-like protein that may organize chloroplast nucleoids. Plant Cell, 14, 1579-1589.
Strain(s): 3377 
PubMed: 12119376
DOI: 10.1105/tpc.002717
Kobayashi, Y., Kanesaki, Y., Tanaka, A., Kuroiwa, H., Kuroiwa, T., Tanaka, K. 2009 Tetrapyrole signal as a cell cycle coordinator from organelle to nuclear DNA replication in plant cells. Proc. Nati. Acad. Sci. U. S. A., 106, 803-807.
Strain(s): 3377 
PubMed: 19141634
DOI: 10.1073/pnas.0804270105
Kobayashi, Y., Takusagawa, M., Harada, N., Fukao, Y., Yamaoka, S., Kohchi, T., Hori, K., Ohta, H., Shikanai, T., Nishimura, Y. 2016 Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. Genome Biol. Evol., 8, 1-16.
Keywords: chloroplast; nucleoid; evolution; endosymbiosis
Strain(s): 2285 
PubMed: 26608058
DOI: 10.1093/gbe/evv233
Kodani, S. 2002 Studies on antialgal compounds of algicidal bacteria. PhD thesis, University of Tokyo, Japan, 87 pp.
Strain(s): 19 
Kodani, S., Imoto, A., Mitsutani, A., Murakami, M. 2002 Isolation and identification of the antialgal compound, harmane (1-methyl-B-carboline), produced by the algicidal bacterium, Pseudomonas sp. K44-1. J. Appl. Phycol., 14, 109-114.
Keywords: Algicidal bacteria; Antialgal compound; Cyanobacteria; Harmane; Pseudomonas sp.; Water bloom
Strain(s): 1923102227299446506 
DOI: 10.1023/A:1019533414018
Kodani, S., Ishida, K., Murakami, M. 1998 Aeruginosin 103-A, a thrombin inhibitor from the cyanobactrium Microcystis viridis. J. Nat. Prod., 61, 1046-1048.
Strain(s): 103 
PubMed: 9722497
DOI: 10.1021/np980106w
Kodani, S., Ishida, K., Murakami, M. 1998 Dehydroradiosumin, a trypsin inhibitor from the cyanobacterium Anabaena cylindrica. J. Nat. Prod., 61, 854-856.
Strain(s): 19 
PubMed: 9644086
DOI: 10.1021/np980048e
Kodani, S., Ishida, K., Murakami, M. 1999 Occurrence and identification of UDP-N-acetylmuramyl-pentapeptide from the cyanobacterium Anabaena cylindrica. FEMS Microbiol. Lett., 176, 321-325.
Keywords: cyanobacterium; UDP-N-acetylmuramyl-pentapeptide; peptidoglycan
Strain(s): 19 
PubMed: 10427714
DOI: 10.1111/j.1574-6968.1999.tb13678.x
Koeduka, T., Ishizaki, K., Mwenda, C. M., Hori, K., Sasaki-Sekimoto, Y., Ohta, H., Kohchi, T., Matsui, K. 2015 Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family. Planta, 242, 1175-1186.
Keywords: Allene oxide synthase; Plant evolution; CYP74; Hydroperoxide lyase; C8 volatiles
Strain(s): 2285 
PubMed: 26105654
DOI: 10.1007/s00425-015-2355-8
Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 2 protoplast induction and regeneration of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 279-286.
Strain(s): 68521632189 
Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 3 interspecific cell fusion of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 287-293.
Strain(s): 68521632189 
Kohata, K., Watanabe, M. 1984 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (II) - Growth of Heterosigma akashiwo, red tide flagellate, in Microcosm. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 111-121 (in Japanese with English summary).
Strain(s): 6 
Kohata, K., Watanabe, M. 1986 Synchronous division and the pattern of diel vertical migration of Heterosigma akashiwo (Hada) Hada (Raphidophyceae) in a laboratory culture tank. J. Exp. Mar. Biol. Ecol., 100, 209-224.
Keywords: cell division; culture tank; DCMU-induced fluorescence; Heterosigma akashiwo; vertical migration
Strain(s): 6 
DOI: 10.1016/0022-0981(86)90163-2
Kohata, K., Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (V) - Growth and cell volume change of Heterosigma akashiwo, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 57-66 (in Japanese with English summary).
Strain(s): 6 
Kohata, K., Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VI) - Diurnal changes of C/N ratio and distribution of chloroplast pigments in the culture of Chattonella antiqua, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 67-77 (in Japanese with English summary).
Strain(s): 1 
Kohata, K., Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VII) - Growth and its mathematical model of Heterosigma akashiwo, a red tide flagellate, in light-limited synchronous cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 79-88 (in Japanese with English summary).
Strain(s): 6 
Kohata, K., Watanabe, M. 1988 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Chattonella antiqua (Raphidophyceae). J. Phycol., 24, 58-66.
Keywords: carotenoids; cellular carbon; Chattonella antiqua; chlorophyll; diel change; laboratory culture tank; light-dark cycles
Strain(s): 1 
DOI: 10.1111/j.1529-8817.1988.tb04456.x
Kohata, K., Watanabe, M. 1989 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Pyramimonas parkeae (Prasinophyceae). J. Phycol., 25, 377-385.
Keywords: carotenoids; cellurar carbon; chlorophyll; diel change; laboratory culture tank; light-dark cycles; loroxanthin dodecenoate; Pyremimonas parkeae
Strain(s): 254 
DOI: 10.1111/j.1529-8817.1989.tb00134.x
Kohata, K., Watanabe, M. M., Nakamura, Y., Watanabe, M. 1982 Growth and phosphate uptake kinetics in Olisthodiscus luteus: grown on synchronized batch cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 95-111 (in Japanese with English summary).
Strain(s): 6 
Kohata, K., Watanabe, M., Yamanaka, K. 1991 Highly sensitive determination of photosynthetic pigments in marine in situ samples by high-performance liquid chromatography. J. Chromatogr. A 558, 131-140.
Strain(s): 67254323353 
DOI: 10.1016/0021-9673(91)80118-Z
Koike, H., Shibata, M., Yasutomi, K., Kashino, Y., Satoh, K. 2000 Identification of photosystem I components from a glaucocystophyte, Cyanophora paradoxa: The PsaD protein has an N-terminal stretch homologous to higher plants. Photosynth. Res., 65, 207-217.
Keywords: Cyanophora paradoxa; glaucocystophyte; light harvesting complex; photosystem I; PsaD; PsaL
Strain(s): 547 
DOI: 10.1023/A:1010734912776
Kojima, E., Yamaguchi, Y. 1988 Photoproduction of hydrogen by adapted cells of Chlorella pyrenoidosa. J. Ferment. Technol., 66, 19-25.
Strain(s): 685 
DOI: 10.1016/0385-6380(88)90124-0
Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.” Photosynth. Res., 130, 445-467.
Keywords: Chlorophyll; Divinyl chlorophyll; Pheophytin; Photosynthesis; Prochlorococcus
Strain(s): 2086208728843376 
PubMed: 27334004
DOI: 10.1007/s11120-016-0283-5
Komor, E., Cho, B.-H., Kraus, M. 1988 The occurrence of the glucose-inducible transport systems for glucose, proline, and arginine in different species of Chlorella. Botanica Acta, 101, 321-326.
Keywords: Amino acid transport; induction by glucose; Chlorella; classification
Strain(s): 6872150 
DOI: 10.1111/j.1438-8677.1988.tb00051.x
Kondo, F., Ikai, Y., Oka, H., Ishikawa, N., Watanabe, M. F., Watanabe, M., Harada, K., Suzuki, M. 1992 Separation and identification of microcystins in cyanobacteria by frit-fast atom bombardment liquid chromatography / mass spectrometry. Toxicon, 30, 227-237.
Strain(s): 1213 
PubMed: 1529459
DOI: 10.1016/0041-0101(92)90865-3
Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M. 2000 Genetic typing of a bloom-forming cyanobacterial genus Microcystis in Japan using 16S rRNA gene sequence analysis. Plankton Biol. Ecol., 47, 1-6.
Keywords: genetic typing; 16S rDNA; Microcystis; cyanobacteria; phylogenetic analysis
Strain(s): 878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M., Hata, Y. 1999 Rapid DNA extraction from a bloom-forming cyanobacterium. Microbes Environ., 14, 157-161.
Keywords: DNA extraction; PCR; Microcystis; cyanobacteria
Strain(s): 878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
DOI: 10.1264/jsme2.14.157
Kondo, R., Kagiya, G., Komura, M., Yuki, Y., Hiroishi, S., Watanabe, M. 2000 Molecular taxonomy of a bloom-forming cyanobacterial genus Microcystis. Bull. Plankton Soc. Japan, 47, 25-33 (in Japanese with English summary).
Keywords: cyanobacteria; Microcystis; bacterial criteria; molecular analysis
Strain(s): 6878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
Kondo, R., Kagiya, G., Yuki, Y., Hiroishi, S., Watanabe, M. 1998 Taxonomy of a bloom-forming cyanobacterial genus Microcystis. Nippon Suisan Gakkaishi, 64, 291-292 (in Japanese with English title).
Strain(s): 87888990919899100101102104105106107108109110111112298299604 
Kondo, R., Komura, M., Hiroishi, S., Hata, Y. 1998 Detection and 16S rDNA sequence analysis of a bloom-forming cyanobacterial genus Microcystis. Fish. Sci., 64, 840-841.
Keywords: Microcystis; 16S rDNA; PCR
Strain(s): 107112 
DOI: 10.2331/fishsci.64.840
Kondo, R., Okamura, T. 2017 Growth and grazing kinetics of the facultative anaerobic nanoflagellate, Suigetsumonas clinomigrationis. Microbes Environ., 32, 80-83.
Keywords: anaerobic flagellate; growth rate; ingestion rate; Lake Suigetsu
Strain(s): 3647 
PubMed: 28190796
DOI: 10.1264/jsme2.ME16113
Kondo, R., Yoshida, T., Yuki, Y., Hiroishi, S. 2000 DNA-DNA reassociation among a bloom-forming cyanobacterial genus, Microcystis. Int. J. Syst. Evol. Microbiol., 50, 767-770.
Keywords: DNA hybridization; DNA G+C content; cyanobacteria; Microcystis
Strain(s): 878998102104111112298604 
PubMed: 10758887
DOI: 10.1099/00207713-50-2-767
Kong, F., Yamasaki, T., Kurniasih, S. D., Hou, L., Li, X., Ivanova, N., Okada, S., Ohama, T. 2015 Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains. Biotech. Bioeng., 120, 239-245.
Keywords: Transgene silencing; Position effect; Squalene synthase-like gene; Botryococcus braunii; Methyltransferase gene
Strain(s): 2235 
PubMed: 25660568
DOI: 10.1016/j.jbiosc.2015.01.005
Konno, R., Wakabayashi, A. 1987 Effects of chemical substance on the growth of algae [Sôrui no zôsyoku ni oyobosu kagakubusshitsu no eikyô]. Tokyo-to Kankyô Kagaku Kenkyûjo Nenpô. 1987, 4 pp. (in Japanese).
Strain(s): 35 
Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193.
Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum
Strain(s): 1617223323324 
PubMed: 18042429
DOI: 10.1016/j.protis.2007.09.004
Koskenniemi, K., Lyra, C., Rajaniemi-Wacklin, P., Jokela, J., Sivonen, K. 2007 Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea. Appl. Environ. Microbiol., 73, 2173-2179.
Strain(s): 8189102 
PubMed: 17277219
DOI: 10.1128/AEM.02746-06
Kotzabasis, K., Schuering, M., Senger, H. 1989 Occurrence of protochlorophyll and its phototransformation to chlorophyll in mutant C-2A' of Scenedesmus obliquus. Physiol. Plant., 75, 221-226.
Keywords: green algae; phototransformation; protochlorophyllide; protochlorophyllide reductase; Scenedesmus obliquus
Strain(s): 2280 
DOI: 10.1111/j.1399-3054.1989.tb06172.x
Koumura, Y., Suzuki, T., Yoshikawa, S., Watanabe, M., Iseki, M. 2004 The origin of photoactivated adenylyl cyclase (PAC), the Euglena blue-light receptor: phylogenetic analysis of orthologues of PAC subunits from several euglenoids and trypanosome-type adenylyl cyclases from Euglena gracilis. Photochem. Photobiol. Sci., 3, 580-586.
Strain(s): 48381 
PubMed: 5170488
DOI: 10.1039/b316075k
Krausfeldt, L. E., Farmer, A. T., Castro, H. F., Boyer, G. L., Campagna, S. R., Wilhelm, S. W. 2020 Nitrogen flux into metabolites and microcystins changes in response to different nitrogen sources in Microcystis aeruginosa NIES‐843. Environ. Microbiol., 22, 2419-2431.
Strain(s): 843 
PubMed: 32338427
DOI: 10.1111/1462-2920.15032
Krienitz, L., Bock, C., Nozaki, H., Wolf, M. 2011 SSU rRNA gene phylogeny of morphospecies affiliated to the bioassay alga "Selenastrum capricornutum" recovered the polyphyletic origin of crescent-shaped Chlorophyta. J. Phycol., 47, 880-893.
Keywords: Kirchneriella; Neocystis mucosa sp. nov..; Nephrochlamys; Raphidocelis; Rhombocystis; Selenastrum; SSU rRNA gene phylogeny; taxonomy; Tetranephris; ultrastructure
Strain(s): 2708270927102711271227132714 
PubMed: 27020023
DOI: 10.1111/j.1529-8817.2011.01010.x
Krivina, E. S., Temraleeva, A. D. 2020 Identification problems and cryptic diversity of Chlorella-clade microalgae (Chlorophyta). Microbiology, 89, 720-732.
Keywords: microalgae; morphology; ecology; phylogeny; 18S−ITS1−5.8S−ITS2 fragments; polyphasic approach
Strain(s): 2167217340324034 
DOI: 10.1134/S0026261720060107
Krupnik, T., Kotabová, E., van Bezouwen, L. S., Mazur, R., Garstka, M., Nixon, P. J., Barber, J., Kaňa, R., Boekema, E. J., Kargul, J. 2013 A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae. J. Biol. Chem., 288, 23529-23542.
Strain(s): 1332 
DOI: 10.1074/jbc.M113.484659
Krupnik, T., Wasilewska, W., Drożak, A., Romanowska, E., Zienkiewicz, M. 2018 Application of chloroplast promoters of Cyanidioschyzon merolae for exogenous protein expression. Algae, 33, 351-358.
Keywords: chloroplast promoters; chloroplast transformation; Cyanidioschyzon merolae
Strain(s): 1332 
DOI: 10.4490/algae.2018.33.12.5
Kuang, X., Peng, L., Chen, A., Xeng, Q., Luo, S., Shao, J. 2019 Enhancement mechanisms of copper(II) adsorption onto kaolinite by extracellular polymeric substances of Microcystis aeruginosa (cyanobacterium). Int. Biodeterior. Biodegrad., 138, 8-14.
Keywords: Microcystis aeruginosa; Extracellular polymeric substances; Copper(II); Adsorption kinetics; Adsorption isotherm
Strain(s): 843 
DOI: 10.1016/j.ibiod.2018.12.009
Kubo, T., Abe, J.,  Saito, T., Matsuda, Y. 2002 Genealogical relationships among laboratory strains of Chlamydomonas reinhardtii as inferred from matrix metalloprotease genes. Curr. Genet., 41, 115-122.
Keywords: Chlamydomonas reinhardtii; Chlamydomonas smithii; matrix metalloprotease genes; molecular phylogeny
Strain(s): 2235 
PubMed: 12073093
DOI: 10.1007/s00294-002-0284-0
Kubo, T., Kato, N., Hosoya, K., Kaya, K. 2008 Effective determination method for a cyanobacterial neurotoxin, β-N-methylamino-L-alanine. Toxicon, 51, 1264-1268.
Keywords: Cyanobacteria; Neurotoxin; BMAA; LC–ESI-MS; HILIC; SIM
Strain(s): 88 
PubMed: 18407310
DOI: 10.1016/j.toxicon.2008.02.015
Kubo, T., Saito, T., Fukuzawa, H., Matsuda, Y. 2001 Two tandemly-located matrix metalloprotease genes with different expression patterns in the Chlamydomonas sexual cell cycle. Curr. Genet., 40, 136-143.
Keywords: cell wall degradation; Chlamydomonas reinhardtii; gametolysin; zygote-specific gene
Strain(s): 2235 
PubMed: 11680823
DOI: 10.1007/s002940100239
Kuchitsu, K., Oh-hama, T., Tsuzuki, M., Miyachi, S. 1987 Detection and characterization of acidic compartments (vacuoles) in Chlorella vulgaris 11h cells by 31P-in vivo NMR spectroscopy and cytochemical techniques. Arch. Mikrobiol., 148, 83-87.
Strain(s): 2160 
Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Changes of starch localization within the chloroplast induced by changes in CO2 concentration during growth of Chlamydomonas reinhardtii. Independent regulation of pyrenoid starch and stroma starch. Plant Cell Physiol., 29, 1269-1278.
Keywords: Chlamydomonas (Chlorophyta); chloroplast; CO2 concentration; pyrenoid; starch; stroma
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077635
Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Characterization of the pyrenoid isolated from unicellular green alga Chlamydomonas reinhardtii. Particulate form of RuBisCO protein. Protoplasma, 144, 17-24.
Keywords: Chlamydomonas; pyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO); stroma
Strain(s): 2235 
DOI: 10.1007/BF01320276
Kumagai, M., Takamura, Y., Yagi, O., Sudo, R. 1986 Interactions between Microcystis aeruginosa and Moraxella nonliquefaciens. Jpn. J. Limnol., 47, 219-228 (in Japanese with English summary).
Keywords: blue-green algae; Microcystis; interaction
Strain(s): 604 
Kumazaki, S., Akari, M., Hasegawa, M. 2013 Transformation of thylakoid membranes during differentiation from vegetative cell into heterocyst visualized by microscopic spectral imaging. Plant Physiol., 161, 1321-1333.
Strain(s): 2095 
PubMed: 23274239
DOI: 10.1104/pp.112.206680
Kume, N., Isono, T., Katoh, T. 1982 Stability of cyanobacterial phycobilisomes in reference to their concentration. Photobiochem. Photobiophys., 4, 25-37.
Strain(s): 2093 
Kume, N., Katoh, T. 1982 Dissociation kinetics of Anabaena phycobilisomes. Plant Cell Physiol., 23, 803-812.
Keywords: Anabaena variabilis; blue-green alga; dissociation kinetics; molecular assembly; phycobiliprotein; phycobilisome
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076414
Kuno, S., Yoshida, T., Kamikawa, R., Hosoda, N., Sako, Y. 2010 The distribution of a phage-related insertion sequence element in the cyanobacterium, Microcystis aeruginosa. Microbes Environ., 25, 295-301.
Keywords: cyanobacteria; Microcystis; cyanophage; insertion sequence; horizontal gene transfer
Strain(s): 90919899101102112298604843105810671070108610981105 
DOI: 10.1264/jsme2.ME10125
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol., 78, 5353-5360.
Strain(s): 87102298 
PubMed: 22636003
DOI: 10.1128/AEM.00626-12
Kunugi, M., Matsumoto, M., Kondo, K. 2010 Effect of culture conditions on production of useful materials by Haematococcus pluvialis. Bull. Soc. Sea Water Sci., Jpn, 64, 297-304 (in Japanese with English summary).
Keywords: biomass; microalgae; carbon dioxide; useful material production
Strain(s): 144 
Kunugi, M., Satoh. S., Ihara. K., Shibata. K., Yamagishi. Y., Kogame. K., Obokata. J., Takabayashi. A., Tanaka. A. 2016 Evolution of green plants accompanied changes in light-harvesting systems. Plant Cell Physiol., 57, 1231-1243.
Keywords: Evolution; Green algae; Land plants; Light adaptation; Photosystem
Strain(s): 254141925412582 
PubMed: 27057002
DOI: 10.1093/pcp/pcw071
Kuramoto, T., Iwamoto, K., Izumi, M., Kirihata, M., Yoshizako, F. 1999 Asymmetric reduction of ethyl 2-methyl 3-oxobutanoate by Chlorella. Biosci. Biotechnol. Biochem., 63, 598-601.
Keywords: Chlorella; asymmetric reduction; ethyl 2-methyl 3-oxobutanoate; (2S, 3S)-ethyl 2-methyl 3-hydroxybutanoate; (2S, 3R)-ethyl 2-methyl 3-hydroxybutanoate
Strain(s): 226227 
PubMed: 10227152
DOI: 10.1271/bbb.63.598
Kurita, T., Moroi, K., Iwai, M., Okazaki, K., Shimizu, S., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T. 2020 Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES‐2145. Genes Cells, 25, 695-702.
Strain(s): 2145 
PubMed: 32888368
DOI: 10.1111/gtc.12805
Kuroda, A., Nakashima, T., Yamaguchi, K., Oda, T. 2005 Isolation and characterization of light-dependent hemolytic cytotoxin fromharmful red tide phytoplankton Chattonella marina. Comp. Biochem. Physiol. C-Pharmacol. Toxicol. Endocrinol., 141, 297-305.
Keywords: Red tide; Phytoplankton; Raphidophycean flagellate; Chattonella marina; Hemolysin; Photosensitizer; Pheophorbide a; Cytotoxin; Photodynamic therapy
Strain(s): 615 
PubMed: 16098818
DOI: 10.1016/j.cca.2005.07.009
Kuroda, M., Horino, T., Inoue, D., Morikawa, M., Ike, M. 2018 Biomass production and nutrient removal through cultivation of Euglena gracilis in domestic wastewater. Jpn. J. Water Treat. Biol., 54, 105-113.
Keywords: Euglena gracilis; biomass production; domestic wastewater; nutrient removal
Strain(s): 48 
DOI: 10.2521/jswtb.54.105
Kuroiwa, T. 1998 The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids. Bioessays, 20, 344-354.
Strain(s): 3377 
DOI: 10.1002/(SICI)1521-1878(199804)20:4<344::AID-BIES11>3.0.CO;2-2
Kuroiwa, T., Kuroiwa, H., Sakai, A., Takahashi, H., Toda, K., Itoh, R. 1998 The division apparatus of plastids and mitochondria. Int. Rev. Cytol., 181, 1-41.
Keywords: Cytokinesis; Organellokinesis; Organelle division; Mitochondrial division; Plastid division; FtsZ; Contractile ring; Cell division
Strain(s): 3377 
DOI: 10.1016/S0074-7696(08)60415-5
Kuroiwa, T., Ohnuma, M., Imoto, Y., Misumi, O., Nagata, N., Miyakawa, I., Fujishima, M., Yagisawa, F., Kuroiwa, H. 2016 Genome size of the ultrasmall unicellular freshwater green alga, Medakamo hakoo 311, as determined by staining with 4′,6-diamidino-2-phenylindole after microwave oven treatments: II. Comparison with Cyanidioschyzon merolae, Saccharomyces cerevisiae (n, 2n), and Chlorella variabilis. Cytologia, 81, 69-76.
Keywords: Ultrasmall genome size; Medakamo hakoo; Saccharyomyces cerevisiae; Chlorella variabilis; DAPI staining; Microwave oven
Strain(s): 3377 
DOI: 10.1508/cytologia.81.69
Kuroiwa, T., Ohnuma, M., Nozaki, H., Imoto, Y., Misumi, O., Kuroiwa, H. 2015 Cytological evidence of cell-nuclear genome size of a new ultra-small unicellular freshwater green alga, “Medakamo hakoo” strain M-hakoo 311 I. Comparison with Cyanidioschyzon merolae and Ostreococcus tauri. Cytologia, 80, 143-150.
Keywords: Ultra-small alga; Chlorophyte M. hakoo; Cyanidioschyzon merolae; Ostreococcus tauri; Genome size; Cytochemistry
Strain(s): 26733377 
DOI: 10.1508/cytologia.80.143
Kuroiwa, T., Suzuki, T., Ogawa, K., Kawano, S. 1981 The chloroplast nucleus: Distribution, number, size and shape, and a model for the multiplication of the chloroplast genome during chloroplast development. Plant Cell Physiol., 22, 381-396.
Keywords: chloroplast nuclei; classification (chloroplast); development (Chloroplast); division cycle (chloroplast)
Strain(s): 472572 
DOI: 10.1093/oxfordjournals.pcp.a076181
Kuroiwa, Y., Al-Maamari, R. S., Tasaki, M., Okamura, K., Sueyoshi, M., Nakashima, A., Yoshida, E., Suzuki, K. 2014 Spirulina subsalsa var. salina var. nov.: Thermo-halotolerant cyanobacteria accumulating two kinds of compatible solute, originated from the Sultanate of Oman. J. Environ. Biotechnol., 14, 43-56.
Keywords: Spirulina subsalsa var. salina var. nov.; Halospirulina; halotolerant; glycine betamine; O-α-D-glucopyranosyl-(1→2)-glycerole
Strain(s): 3373 
Kushibiki, A., Yokoyama, A., Iwataki, M., Yokoyama, J., West, J. A., Hara, Y. 2012 New unicellular red alga, Bulboplastis apyrenoidosa gen. et sp. nov. (Rhodellophyceae, Rhodophyta) from the mangroves of Japan: Phylogenetic and ultrastructural observations. Phycol. Res., 60, 114-122.
Keywords: Bulboplastis apyrenoidosa; chloroplast; Golgi body; mannitol; nucleus-associated organelles; small subunit rDNA; ultrastructure; unicellular red alga
Strain(s): 2742 
DOI: 10.1111/j.1440-1835.2012.00643.x
Kusui, T., Itatsu, Y., Jin, J. 2017 Whole effluent toxicity assessment of industrial effluents. In Toxicity and biodegradation testing, Eds. by Bidoia, E. D. & Montagnolli, R. N., Humana Press, New York, NY, pp. 331-347.
Strain(s): 35 
DOI: 10.1007/978-1-4939-7425-2_17
Kusumi, T., Ooi, T., Watanabe, M. M. Takahashi, H., Kakisawa, H. 1987 Cyanoviridin RR, a toxin from the cyanobacterium (blue-green alga) Microcystis viridis. Tetrahedron Letters, 28, 4695-4698.
Strain(s): 102 
DOI: 10.1016/S0040-4039(00)96600-0
Kusumi, T., Takata, Y., Itatsu, Y., Zha, J. 2014 Whole effluent toxicity assessment of industrial effluents in Toyama, Japan with a battery of short-term chronic bioassays. J. Water Environ. Technol., 12, 55-63.
Keywords: aqquatic organism; ecotoxic effect; industrial effluent; whole effluent toxicity (WET)
Strain(s): 35 
DOI: 10.2965/jwet.2014.55
Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N. 2020 Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean. Microbiol Resour Announc., 9, e00367-20 (article ID).
Strain(s): 2565 
DOI: 10.1128/MRA.00367-20
Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A. 2018 Bolidophyceae, a sister picoplanktonic group of diatoms – a review. Front. Mar. Sci., 5, 370 (article ID).
Keywords: bolidophyceae; parmales; diatoms; genetic diversity; mitosis; geographical distribution; seasonal dynamics and silicification
Strain(s): 25652682336933703371369937003701 
DOI: 10.3389/fmars.2018.00370
Kwak, H. S., Kim, J. Y. H., Sim, S. J. 2015 A microreactor system for cultivation of Haematococcus pluvialis and astaxanthin production. J. Nanosci. Nanotechnol., 15, 1618-1623.
Keywords: Astaxanthin; Haematococcus pluvialis; Microfluidic Devices; Nile Red; PDMS
Strain(s): 144 
PubMed: 26353702
DOI: 10.1166/jnn.2015.9321
Lababpour, A., Hada, K., Shimahara, K., Katsuda, T., Katoh, S. 2004 Effects of nutrient supply methods and illumination with blue light emitting diodes (LEDs) on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 98, 452-456.
Keywords: astaxanthin; Haematococcus pluvialis; blue light emitting diode (LED); nutrient supply
Strain(s): 144 
PubMed: 16233735
DOI: 10.1016/S1389-1723(05)00311-7
Lababpour, A., Shimahara, K., Hada, K., Kyoui, Y., Katsuda, T., Katoh, S. 2005 Fed-batch culture under illumination with blue light emitting diodes (LEDs) for astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 100, 339-342.
Keywords: astaxanthin; Haematococcus pluvialis; fed-batch culture; blue light emitting diode (LED)
Strain(s): 144 
PubMed: 16243287
DOI: 10.1263/jbb.100.339
Laflamme, M., Lee, R. W. 2003 Mitochondrial genome conformation among CW-group Chlorophycean algae. J. Phycol., 39, 213-220.
Keywords: Chlamydomonas; Chlorophyceae; gel electrophoresis; mitochondrial DNA conformation; phylogeny
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DOI: 10.1046/j.1529-8817.2003.02045.x
Lang, I., Hodac, L., Friedl, T., Feussner, I. 2011 Fatty acid profiles and their distribution patterns in microalgae: a comprehensive analysis of more than 2000 strains from the SAG culture collection. BMC Plant Biol., 11, 124 (article ID).
Keywords: Fatty Acid Profile; Spirulina; Fatty Acid Pattern; Multiple Strain; Canonical Variate Analysis
Strain(s): 4282 
PubMed: 21896160
DOI: 10.1186/1471-2229-11-124
Langer, G., Nehrke, G., Probert, I., Ly, J., Ziveri, P. 2009 Strain-specific responses of Emiliania huxleyi to change seawater carbonate chemistry. Biogeosciences, 6, 2637-2646.
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Lapsongpon, T., Leungprasert, S., Yoshimura, C. 2017 Pre-chlorination contact time and the removal and control of Microcystis aeroginosa in coagulation. 7th International Conference on Environment and Industrial Innovation, 012011 (article ID).
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Le Gall, F., Rigaut-Jalabert, F., Marie, D., Garczareck, L., Viprey, M., Godet, A., Vaulot, D. 2008 Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences, 5, 203-214.
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Lebre P. H., Cowan D. A 2019 Genomics of alkaliphiles. In Alkaliphiles in Biotechnology, Eds. by Mamo G., Mattiasson B., Springer, Cham, pp. 135-155.
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Lebret, K., Tesson, S. V. M., Kritzberg, E. S., Tomas, C., Rengefors, K. 2015 Phylogeography of the freshwater raphidophyte Gonyostomum semen confirms a recent expansion in northern Europe by a single haplotype. J. Phycol., 51, 768-781.
Keywords: Gonyostomum semen; ITS; LSU; phylogeography; raphidophyte SSU
Strain(s): 100913801808 
PubMed: 26986795
DOI: 10.1111/jpy.12317
Lee, C., Ahn, J.-W., Kim, J.-B., Kim, J. Y., Choi, Y.-E. 2018 Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength. World J. Microbiol. Biotechnol., 34, 96 (article ID).
Keywords: Gene expression; Carotenoid biosynthesis; Differentially expressed genes; Microalgae; LED wavelength
Strain(s): 144 
PubMed: 29916185
DOI: 10.1007/s11274-018-2459-y
Lee, C., Jeon, M. S., Vo, T-T., Park, C., Choi, J-S., Kwon, J., Roh, S. W., Choi, Y-E. 2018 Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria. J. Appl. Phycol., 30 1795–1806.
Keywords: Algal bloom; Cyanobacterium; Bacterial isolation; Microcystis; Biological control; Microcystin degradation
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DOI: 10.1007/s10811-018-1403-8
Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E. 2019 Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage. Algal Res., 41, 101547.
Keywords: Unicellular microalgae; Haematococcus spp.; Symbiotic bacteria; Achromobactersp.; Growth promotion; Auxin
Strain(s): 144 
DOI: 10.1016/j.algal.2019.101547
Lee, H., Ban, S. 1999 Effect of crowding on growth and reproduction of Simocephalus vetulus O.F.Muller. Hydrobiologia, 391, 135-145.
Keywords: flow-through technique; crowding effect; growth and reproduction; neonate size; reproductive investments; Simocephalus vetulus
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Lee, H.-W., Ban, S., Ando, Y., Ota, T., Ikeda, T. 1999 Deleterious effect of diatom diets on egg production and hatching success in the marine copepod Pseudocalanus newmani. Plankton Biol. Ecol., 46, 104-112.
Keywords: diatom effect; copepod; Pseudocalanus newmani; clutch size; hatching success
Strain(s): 7 
Lee, H-W., Ban, S., Ikeda, T., Matsuishi, T. 2003 Effect of temperature on development, growth and reproduction in the marine copepod Pseudocalanus newmani at satiating food condition. J. Plankton Res., 25, 261-271.
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Lee, J.-Y., Jeong, S.-Y. 2018 Characteristics and effects of algal-lytic bacterium for control of fresh water microalgae. J. Eng. Appl. Sci., 13, 2803-2808.
Keywords: Algal blooms; algal-lytic activity; fresh microalgae; Microcystis aeruginosa; Pseudomonas sp. JS-9; substance
Strain(s): 298 
Lee, K.-Y., Park, J.-H., Park, B.-S. 1996 CO2 fixation and SCP production using blue green algae. Theories and Applications of Chem. Eng. (Korea), 2, 489-492 (in Korean with English title).
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Lee, S, Kato, J, Takiguchi, N. Kuroda, A., Ikeda, T., Mitsutani, A., Ohtake, H. 2000 Involvement of an extracellular protease in algicidal activity of the marine bacterium Pseudoalteromonas sp. strain A28. Appl. Environ. Microbiol., 66, 4334-4339.
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Lee, S., Thio, S. K., Park, S.-Y., Bae, S. 2019 An automated 3D-printed smartphone platform integrated withoptoelectrowetting (OEW) microfluidic chip for on-site monitoring of viablealgae in water. Harmful Algae, 88, 101638 (article ID).
Keywords: Algae quantification; In-situ assessment; Viable algae; 3D-printed smartphone platform; Optoelectorwetting
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DOI: 10.1016/j.hal.2019.101638
Lee, T. Y., Praveenkumar, R., Oh, Y. K. Lee, K., Kim, S. H. 2016 Alginate microgels created by selective coalescence between core drops paired with an ultrathin shell. J. Mater. Chem. B, 4, 3232-3238.
Strain(s): 144 
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Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1994 In vivo fluorometric method for early detection of cyanobacterial waterblooms. J. Appl. Phycol., 6, 489-495.
Keywords: cyanobacteria; waterblooms; in vivo fluorescence; monitoring; Microcystis aeruginosa
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Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1995 Quantitative determination of cyanobacteria in mixed phytoplankton assemblages by an in vivo fluorimetric method. Anal. Chim. Acta, 302, 81-87.
Keywords: cyanobacteria; quantitative estimation; phycocyanin; waterblooms; Microcystis aeruginosa
Strain(s): 298512 
DOI: 10.1016/0003-2670(94)00425-L
Lee, T.-Y., Gotoh, N., Niki, E., Yokoyama, K., Tsuzuki, M., Takeuchi, T., Karube, I. 1995 Chemilluminescence detection of red tide phytoplankton Chattonella marina. Anal. Chem., 67, 225-228.
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Lee, Y.-K., Ahn, C.-Y., Kim, H.-S., Oh, H.-M. 2010 Cyanobactericidal effect of Rhodococcus sp. isolated from eutrophic lake on Microcystis sp. Biotechnol. Lett., 32, 1673-1678.
Keywords: Algicide; Bloom; Cyanobacteria; Microcystis; Rhodococcus
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DOI: 10.1007/s10529-010-0350-5
Lee, Y.-K., Soh, C.-W. 1991 Accumulation of astaxanthin in Haematococcus lacustris (Chlorophyta). J. Phycol., 27, 575-577.
Keywords: astaxanthin; chemostat cultures; chlorophyta; Haematococcus lacustris; photon flux density; specific growth rate
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Lee, Y.-K., Tan, H.-M. 1988 Interphylum protoplast fusion and genetic recombination of the algae Porphyridium cruentum and Dunaliella spp. J. Gen. Microbiol., 134, 635-641.
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Lei, C., Kobayashi, H., Wu, Y., Li, M., Isozaki, A., Yasumoto, A., Mikami, H., Ito, T., Nitta, N., Sugimura, T., Yamada, M., Yatomi, Y., Di Carlo, D., Ozeki, Y., Goda, K. 2018 High-throughput imaging flow cytometry by optofluidic time-stretch microscopy. Nat. Protoc., 13, 1603-1631.
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PubMed: 29976951
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Leikoski, N., Fewer, D. P., Jokela, J., Alakoski, P., Wahlsten, M., Sivonen, K. 2012 Analysis of an inactive cyanobactin biosynthetic gene cluster leads to discovery of new natural products from strains of the genus Microcystis. PLoS One, 7, e43002 (article ID).
Strain(s): 843 
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Lemieux, C., Otis, C., Turmel, M. 2000 Ancestral chloroplast in Mesostigma viride reveals an early branch of green plant evolution. Nature, 403, 649-652.
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Lemieux, C., Otis, C.,Turmel, M. 2014 Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol. Biol., 14, 211 (article ID).
Keywords: Chlorophyta; Trebouxiophyceae; Plastid genome; Phylogenomics
Strain(s): 18242166 
PubMed: 25270575
DOI: 10.1186/s12862-014-0211-2
Lemieux, C., Otis, C.,Turmel, M. 2014 Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species. BMC Evol. Biol., 14, 857 (article ID).
Keywords: Viridiplantae; Prasinophytes; Prasinococcales; Picocystis; Picoplanktonic algae; Nephroselmis; Plastid genome; Phylogenomics; Genome reduction; trans-spliced group II intron
Strain(s): 252 
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Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID).
Keywords: Chlorophyceae; Chlamydomonadales; Golenkiniaceae; Treubarinia, Jenufa genus; Plastid genome; Flagellar apparatus
Strain(s): 257425 
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Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D. 2011 Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiol. Ecol., 76, 513-523.
Keywords: whole-genome amplification; photosynthetic; microbial eukaryote; flow cytometry sorting; rRNA genes
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Lerche, K., Hallmann, A. 2009 Stable nuclear transformation of Gonium pectorale. BMC Biotechnol., 9, 64 (article ID).
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Li, JR., Wu, Y., Qi, YJ. 2014 microRNAs in a multicellular green alga Volvox carteri. Sci. China-Life Sci., 57, 36-45.
Keywords: Volvox; small RNA; microRNA; conservation; evolution
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Li, M., Muñoz, H. E., Goda, K., Di Carlo, D. 2017 Shape-based separation of microalga Euglena gracilis using inertial microfluidics. Sci Rep, 7, 10802 (article ID).
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Li, M., van Zee, M., Goda, K., Di Carlo, D. 2018 Size-based sorting of hydrogel droplets using inertial microfluidics. Lab Chip, 18, 2575-2582.
Strain(s): 48 
PubMed: 30046787
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Li, M., van Zee, M., Riche, C. T., Tofig, B., Gallaher, S. D., Merchant, S. S., Damoiseaux, R., Goda, K., Di Carlo, D. 2018 A gelatin microdroplet platform for high‐throughput sorting of hyperproducing single‐cell‐derived microalgal clones. Small, 14, 1803315 (article ID).
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Li, R., Carmichael, W. W., Pereira, P. 2003 Morphological and 16S rRNA gene evidence for reclassification of the paralytic shellfish toxin producing Aphanizomenon flos-aquae LMECYA 31 as Aphanizomenon issatschenkoi (Cyanophyceae). J. Phycol., 39, 814-818.
Keywords: Ahanizomenon issatschenkoi; cyanotoxin; 16S rDNA; morphology; gene sequences; taxonomy
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DOI: 10.1046/j.1529-8817.2003.02199.x
Li, R., Carmichael, W. W., Watanabe, M. M. 2000 Taxonomic re-evaluation of Aphanizomenon flos-aquae NH-5 based on morphology and 16S rRNA gene sequences. Hydrobiologia, 438, 99-105.
Keywords: Aphanizomenon; Cyanobacteria; 16S rRNA; morphology; sequences; taxonomy
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Li, R., Watanabe, M. M. 2004 Fatty acid composition of planktonic species of Anabaena (Cyanobacteria) with coiled trichomes exhibited a significant. Curr. Microbiol., 49, 376-380.
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Li, R., Watanabe, M., Watanabe, M. M. 2000 Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains. Hydrobiologia, 438, 117-138.
Keywords: Anabaena; cyanobacteria; identification; morphology; planktic; taxonomy
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DOI: 10.1023/A:1004170230774
Li, R., Yokota, A., Sugiyama, J., Watanabe, M., Hiroki, M., Watanabe, M. M. 1998 Chemotaxonomy of planktonic cyanobacteria based on non-polar and 3-hydroxy fatty acid composition. Phycol. Res., 46, 21-28.
Keywords: 3-hydroxy fatty acids; chemotaxonomy; fatty acid; non-polar fatty acids; planktonic cyanobacteria
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Li, WW., Xia, MS., Li, WB., Liu, LW., Yang, Y., Li, JH. 2018 Characterization of a putative S-layer protein of a colonial Microcystis strain. Curr. Microbiol., 75, 173-178.
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Li, Y., Qin, J. G. 2005 Comparison of growth and lipid content in three Botryococcus braunii strains. J. Appl. Phycol., 17, 551-556.
Keywords: temperature; irradiance; salinity; Botryococcus braunii; hydrocarbon
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Liang, Z., Geng, Y., Ji, C., Du, H., Wong, C. E., Zhang, Q., Zhang, Y., Zhang, P., Riaz, A., Chachar, S., Ding, Y., Wen, J., Wu, Y., Wang, M., Zheng, H., Wu, Y., Demko, V., Shen, L., Han, X., Zhang, P., Gu, X., Yu, H. 2020 Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta. Adv. Sci., 7, 1901850 (article ID).
Keywords: Mesostigma viride; evolution; green algae; multicellularity; Streptophyta
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PubMed: 31921561
DOI: 10.1002/advs.201901850
Lianga, Y., Kaczmarek, M. B., Kasprzak, A. K., Tang, J., Shah, M. M. R., Jin, P., Klepacz-Smółk, A., Cheng, J. J., Ledakowicz, S., Daroch, M. 2018 Thermosynechococcaceae as a source of thermostable C-phycocyanins: properties and molecular insights. Algal Res., 35, 223-235.
Keywords: Cyanobacteria; Phycocyanin; Thermophile; Thermostability; Phycobilisome; Natural pigment
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DOI: 10.1016/j.algal.2018.08.037
Lim, A. S., Jeong, H. J., Ok, J. H., Kim, S. J. 2018 Feeding by the harmful phototrophic dinoflagellate Takayama tasmanica (Family Kareniaceae). Harmful Algae, 74, 19-29.
Keywords: Grazing; Growth; Harmful algal bloom; Ingestion; Mixotrophy; Red tide
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Lin, S., Wu, Z., Yu, G., Zhu, M., Yu, B., Li, R. 2010 Genetic diversity and molecular phylogeny of Planktothrix (Oscillatoriales, cyanobacteria) strains from China. Harmful Algae, 9, 87-97.
Keywords: diversity; phylogeny; Planktothrix; 16S rRNA; rbcLX; rpoC1; taxonomy; water bloom
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Lin, W., Zhao, D., Luo, J. 2018 Distribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth. J. Appl. Phycol., 30, 839-850.
Keywords: Alkaline; phosphatase; Cyanobacteria; Dissolved organic phosphorus; Distribution
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DOI: 10.1007/s10811-017-1267-3
Lin, Y., Ge, J., Zhang, Y., Ling, H., Yan, X., Ping, W. 2019 Monoraphidium sp. HDMA-20 is a new potential source of α-linolenic acid and eicosatetraenoic acid. Lipids Health Dis., 18, 56 (article ID).
Keywords: PUFA; ALA; ETA; Microalgae; Monoraphidium
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Liu, C. B., Lin, L. P., Su, Y. C. 1996 Utilization of Chlorella vulgaris for uptake of nitrogen, phosphorus and heavy metals. J. Chin. Agr. Chem. Soc., 34, 331-343 (in Chinese with English summary).
Keywords: Chlorella vulgaris; heavy metals; nitrogen; phosphorus
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Liu, J. Y., Jiang, T., Zhang, J. P., Liang, D. C. 1999 Crystal structure of allophycocyanin from red algae Porphyra yezoensis at 2.2-angstrom resolution. J. Biol. Chem., 274, 16945-16952.
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Liu, J., Gerken, H., Li, Y. 2014 Single-tube colony PCR for DNA amplification and transformant screening of oleaginous microalgae. J. Appl. Microbiol., 26, 1719-1726.
Keywords: Biofuels; Colony PCR; High throughput; Microalgae; Single tube; Transformant screening
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DOI: 10.1007/s10811-013-0220-3
Liu, J., Yang, C., Chi, Y., Wu, D., Dai, X., Zhang, X., Igarashi, Y., Luo, F. 2019 Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake. J. Basic Microbiol., 59, 1112-1124.
Keywords: Bacillus licheniformis; Microcystis aeruginosa; algicidal bacterium; biocontrol agent; cyanobacterial blooms
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PubMed: 31502316
DOI: 10.1002/jobm.201900112
Liu, L., Chen, J., Lim, P-E., Wei, D. 2018 Dual-species cultivation of microalgae and yeast for enhanced biomass and microbial lipid production. J. Appl. Phycol., 30, 2997–3007.
Keywords: Chlorella; Oleaginous yeast; Artificial consortium; Mixed culture; Microbial lipid production
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Liu, S.-L., Chiang, Y.-R., Yoon, H. S., Fu, H.-Y. 2020 Comparative genome analysis reveals Cyanidiococcus gen. nov., a new extremophilic red algal genus sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta). J. Phycol., 56, 1428-1442.
Strain(s): 33774390 
DOI: 10.1111/jpy.13056
Liu, SH., Zhang, PY., Cong, BL., Liu, CL., Lin XZ., Shen, JH., Huang, XH. 2010 Molecular cloning and expression analysis of a cytosolic Hsp70 gene from Antarctic ice algae Chlamydomonas sp. ICE-L. Extremophiles, 14, 329-337.
Keywords: Antarctic ice algae; Chlamydomonas sp. ICE-L; Heat shock protein; Hsp70; Psychrophile; Stress
Strain(s): 843 
DOI: 10.1007%2Fs00792-010-0313-8
Liu, W., Au, D. W.T., Anderson, D. M., Lam, P. K.S., Wu, R. S.S. 2007 Effects of nutrients, salinity, pH and light: dark cycle on the production of reactive oxygen species in the alga Chattonella marina. J. Exp. Mar. Biol. Ecol., 346, 76-86.
Keywords: Chattonella marina; Iron; Nutrient; pH; Physical parameters; Plasma membrane; Reactive oxygen species; Redox
Strain(s): 3 
DOI: 10.1016/j.jembe.2007.03.007
Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2014 Effects of temperature on life history traits of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Limnology, 15, 85-97.
Keywords: Life history traits; Temperature effects; Eodiaptomus japonicus; Copepod dynamics; Individual variability
Strain(s): 2822235 
DOI: 10.1007/s10201-013-0417-9
Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2015 Combined effects of temperature and food concentration on growth and reproduction of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Freshw. Biol., 60, 2003-2018.
Keywords: copepod dynamics; egg production; Eodiaptomus japonicus; individual growth rates; temperature–food effects
Strain(s): 2822235 
DOI: 10.1111/fwb.12626
Liu, X., Fujiwara, M., Kodera, T., Watanabe, K., Akizuki, S., Kishi, M., Koyama, M., Toda, T., Ban, S. 2020 Conditions for continuous cultivation of Chlorella sorokiniana and nutrient removal from anaerobic digestion effluent of aquatic macrophytes. Int. Biodeterior. Biodegrad., 149, 104923 (article ID).
Keywords: Flow-through cultivation; pH-controlled process; Biomass recovery; Green algae; Energy recycling; Wastewater treatment
Strain(s): 2168 
DOI: 10.1016/j.ibiod.2020.104923
Liu, X., Syuhei, B. 2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter. J. Plankton Res., 39, 111-121.
Keywords: temperature acclimatization; metabolic rates; oxygen consumption rates; zooplankton; optical oxygen meter
Strain(s): 2822235 
DOI: 10.1093/plankt/fbw084
Liu, Y., Hao, A., Iseri, Y., Kuba, T., Zhang, A. 2014 A comparison of the mussel Anodonta woodiana's acute physiological responses to different algae diets. JOCET, 2, 126-131.
Keywords: Anodonta woodiana; microcystis aeruginosa; scenedesmus obliquus; scope for growth (SFG)
Strain(s): 902279 
DOI: 10.7763/JOCET.2014.V2.106
Liu, Y., Hao, A., Iseri, Y., Li, C., Zhang, Z., Kuba, T. 2015 Possible survival mechanisms of Sinanodonta woodiana exposed to microcystin. J. JSCE, 3, 259-267.
Keywords: Sinanodonta woodiana; selective feeding mechanism; Microcystis-blooming; detoxification mechanism; scope for growth (SFG)
Strain(s): 902279 
DOI: 10.2208/journalofjsce.3.1_259
Liu, Z., Hou, Y., He, C., Wang, X., Chen, S., Huang, Z., Chen, F. 2020 Enhancement of linoleic acid content stimulates astaxanthin esterification in Coelastrum sp. Bioresour. Technol., 300, 122649 (article ID).
Keywords: Linoleic acid; astaxanthin esterification; Coelastrum sp.; Free astaxanthin; Fatty acid profile
Strain(s): 144 
PubMed: 31896045
DOI: 10.1016/j.biortech.2019.122649
Livingston, G., Fukumori, K., Provete, D. B., Kawachi, M., Takamura, N., Leibold, M. A. 2017 Predators regulate prey species sorting and spatialdistribution in microbial landscapes. J. Anim. Ecol., 86, 501-510.
Keywords: bacteria; colonization; dispersal; disturbance; protists; spatial pattern; variation partitioning
Strain(s): 2239 
PubMed: 28138991
DOI: 10.1111/1365-2656.12639
Loganathan, N., Tsai, YC., Mueller-Cajar, O. 2016 Characterization of the heterooligomeric red-type rubisco activase from red algae. Proc. Nati. Acad. Sci. U. S. A., 113, 14019-14024.
Keywords: rubisco; activase; photosynthesis; AAA+ proteins; red algae
Strain(s): 1332 
PubMed: 27872295
DOI: 10.1073/pnas.1610758113
Logares, R., Shalchian-Tabrizi, K., Boltovskoy, A., Rengefors, K. 2007 Extensive dinoflagellate phylogenies indicate infrequent marine–freshwater transitions. Mol. Phylogenet. Evol., 45, 887-903.
Keywords: Dinoflagellates; Freshwater; Colonization; Phylogeny
Strain(s): 304463471495501 
PubMed: 17928239
DOI: 10.1016/j.ympev.2007.08.005
Lopes dos Santos, A., Gourvil, P., Tragin, M., Noël, M.-H., Decelle, J., Romac, S., Vaulot, D. 2016 Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J., 11, 512-528.
Strain(s): 275527562758366836693670367138353849 
PubMed: 27779617
DOI: 10.1038/ismej.2016.120
Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., Rodríguez, F., Noël, M.-H., Vaulot, D., Eikrem, W. 2017 Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Sci Rep, 7, 14019 (article ID).
Strain(s): 2755275627583667366836693670367138353849 
PubMed: 10.3775/jie.96.352
DOI: 10.1038/s41598-017-12412-5
Lu, J., Satoh, H., Takeuchi, T. 2008 Development of models of threshold and efficient algal densities for larval and juvenile tilapia Oreochromis niloticus on raw Spirulina. Aquaculture, 285, 249-254.
Keywords: assimilation; 14C labeling; CERAS (closed ecological recirculating aquaculture system); density; ingestion; Spirulina; Oreochromis niloticus
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2008.08.039
Lu, J., Takeuchi, T. 2004 Spawning and egg quality of the tilapia Oreochromis niloticus fed solely on raw Spirulina throughout three generations. Aquaculture, 234, 625-640.
Keywords: Closed ecological recirculating aquaculture system (CERAS); egg quality; larval quality; Oreochromis niloticus; parent; progeny; reproduction; spawn; Spirulina platensis
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2003.12.027
Lu, J., Takeuchi, T., Satoh, H. 2004 Ingestion and assimilation of three species of freshwater algae by larval tilapia Oreochromis niloticus. Aquaculture, 238, 437-449.
Keywords: carbon assimilation; closed ecological recirculating aquaculture system (CERAS); Chlorella; 14C labeling; Euglena; ingestion; Oreochromis niloticus; Spirulina
Strain(s): 3948641 
DOI: 10.1016/j.aquaculture.2004.05.002
Lu, J., Takeuchi, T., Satoh, H. 2006 Ingestion, assimilation and utilization of raw Spirulina by larval tilapia Oreochromis niloticus during larval development. Aquaculture, 254, 686-692.
Keywords: assimilation; 14C labeling; CERAS (closed ecological recirculating aquaculture system); ingestion; Spirulina; Oreochromis niloticus
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2005.11.002
Lu, Y., Zhuo, C., Li, Y., Li, H., Yang, M., Xu, D., He, H. 2020 Evaluation of filamentous heterocystous cyanobacteria for integrated pig-farm biogas slurry treatment and bioenergy production. Bioresour. Technol., 297, 122418 (article ID).
Keywords: Pig farm; Biogas slurry; Filamentous cyanobacteria; Wastewater treatment; Bioenergy
Strain(s): 3756 
PubMed: 31761632
DOI: 10.1016/j.biortech.2019.122418
Lu, Z., Dai, J., Zheng, L., Teng, Z., Zhang, Q., Qiu, D., Song, L. 2020 Disodium 2-oxoglutarate promotes carbon flux into astaxanthin and fatty acid biosynthesis pathways in Haematococcus. Bioresour. Technol., 299, 122612 (article ID).
Keywords: Haematococcus pluvialis; Disodium 2-oxoglutarate; Astaxanthin production; Fatty acids biosynthesis; Carbon allocation
Strain(s): 144 
PubMed: 31874452
DOI: 10.1016/j.biortech.2019.122612
Lu, Z., Zheng, L., Liu, J., Dai, J., Song, L. 2019 A novel fed-batch strategy to boost cyst cells production based on the understanding of intracellular carbon and nitrogen metabolism in Haematococcus pluvialis. Bioresour Technol., 289, 121744 (article ID).
Keywords: Haematococcus pluvialis; C/N metabolism; Astaxanthin biosynthesis; Series-gradient-fed strategy; Hyper-production
Strain(s): 144 
PubMed: 31323718
DOI: 10.1016/j.biortech.2019.121744
Lucksch, I.. 1932 Ernährungsphysiologische Untersuchungen an Chlamydomonadeen. Beih. Bot. Centralbl., 50, 64-94.
Strain(s): 220622132229 
Ludewig-Klingner, A. K., Michael, V., Jarek, M., Brinkmann, H., Petersen, J. 2018 Distribution and evolution of peroxisomes in alveolates (Apicomplexa, Dinoflagellates, Ciliates). Genome Biol. Evol., 10, 1-13.
Keywords: Vitrella brassicaformis; Toxoplasma gondii; glyoxylate cycle; diagnostic peroxins; catalase; phylogeny
Strain(s): 4391 
PubMed: 29202176
DOI: 10.1093/gbe/evx250
Luo, W., Kotut, K., Krienits, L. 2013 Hidden diversity of eukaryotic plankton in the soda lake Nakuru, Kenya, during a phase of low salinity revealed by a SSU rRNA gene clone library. Hydrobiologia, 702, 95-103.
Keywords: Chlorophyta; clone library; lake Nakuru; lesser flamingo; phytoflagellates; Soda lakes; SSU rRNA
Strain(s): 4461360 
DOI: 10.1007/s10750-012-1310-y
Luu, P. T., Son, D. T., Utsumi, M. 2016 Accumulation and elimination of Microcystins in freshwater clam Corbicula leana under laboratory conditions, assessment of risks to humans. J. Biotechnol., 14, 1-10.
Keywords: alga; heterokontophyte; hexa-amine; labyrinthulomycete; methylated polyamine; penta-amine
Strain(s): 1018001086 
Lyra, C., Suomalainen, S., Gugger, M., Vezie, C., Sundman, P., Paulin, L., Sivonen, K. 2001 Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int. J. Syst. Evol. Microbiol., 51, 13-526.
Keywords: cyanobacteria; 16S rRNA gene; RFLP; sequencing; REP; ERIC
Strain(s): 41447379818998102104 
DOI: 10.1099/00207713-51-2-513
Lysgaard, M. L., Eckford-Soper, L., Daugbjerg, N. 2018 Growth rates of three geographically separated strains of the ichthyotoxic Prymnesium parvum (Prymnesiophyceae) in response to six different pH levels. Estuar. Coast. Shelf Sci., 204, 98-102.
Keywords: Prymnesium parvum; pH response; Growth rate; Phenotypic plasticity; pH acclimation; Harmful algae
Strain(s): 1017 
DOI: 10.1016/j.ecss.2018.02.030
Lyu, Y., Richlen, M, L. Sehein, T. R, Chinain, M., Adachi, M., Nishimura, T., Xu, Y., Parsons, M. L., Smith, T. B., Zheng, T., Anderson, D. M. 2017 LSU rDNA based RFLP assays for the routine identification of Gambierdiscus species. Harmful Algae, 66, 20-28.
Keywords: Gambierdiscus; Ciguatera; RFLP; LSU rDNA
Strain(s): 4119 
PubMed: 28602250
DOI: 10.1016/j.hal.2017.04.009
Ma, M., Zhu, W., Wang, Z., Witkamp, G. J. 2003 Accumulation, assimilation and growth inhibition of copper on freshwater alga (Scenedesmus subspicatus 86.81 SAG) in the presence of EDTA and fulvic acid. Aquat. Toxicol., 63, 221-228.
Keywords: Copper; Toxicity; Alga; FIAM; BLM
Strain(s): 4282 
PubMed: 12711412
DOI: 10.1016/S0166-445X(02)00179-0
MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451.
Strain(s): 21222526303944738788267592806843932970209821002107210825493275375437563974407340744075410141034106 
PubMed: 31899489
DOI: 10.1093/molbev/msz308
MacKenzie, L. A., Smith, K. F., Rhodes, L. L., Brown, A., Langi, V., Edgar, M., Lovell, G., Preece, M. 2011 Mortalities of sea-cage salmon (Oncorhynchus tshawytscha) due to a bloom of Pseudochattonella verruculosa (Dictyochophyceae) in Queen Charlotte Sound, New Zealand. Harmful Algae, 11, 45-53.
Keywords: Pseudochattonella verruculosa; Dictyochophyceae; salmon kill; Queen Charlotte Sound; New Zealand
Strain(s): 1603 
DOI: 10.1016/j.hal.2011.07.003
Maeda, I., Kudou, S., Iwai, S. 2021 Efficient isolation and cultivation of endosymbiotic Chlorella from Paramecium bursaria on agar plates by co-culture with yeast cells. J. Microbiol. Methods, 186, 106254 (article ID).
Strain(s): 227 
PubMed: 34052226
DOI: 10.1016/j.mimet.2021.106254
Magonono, M., Oberholster, P. J., Addmore, S., Stanley, M., Gumbo, J. R. 2018 The presence of toxic and non-toxic Cyanobacteria in the sediments of the Limpopo River Basin: Implications for human health. Toxins, 10, 269 (article ID).
Keywords: cyanobacteria; cyanotoxins; nutrient enrichment; akinetes; harmful algal blooms; PCR; phylogenetic analyses
Strain(s): 40744103 
PubMed: 29970791
DOI: 10.3390/toxins10070269
Mai, J. C., Coleman, A. W. 1997 The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J. Mol. Evol., 44, 258-271.
Keywords: Angiosperms; Chlamydomonas; Ribosomal RNA; RNA secondary structure; Transcribed spacer
Strain(s): 691 
PubMed: 9060392
DOI: 10.1007/pl00006143
Maki, T., Imai, I. 2001 Effects of harmful dinoflagellate Heterocapsa circularisquama cells on the growth of intracellular bacteria. Microbes Environ., 16, 234-239.
Keywords: dinoflagellate; red tide; Heterocapsa circularisquama; intracellular bacteria; growth
Strain(s): 1 
Makino, T., Harada, H., Ikenaga, H., Matsuda, S., Takaichi, S., Shindo, K., Sandmann, G., Ogata, T., Misawa, N. 2008 Characterization of cyanobacterial carotenoid ketolase CrtW and hydroxylase CrtR by complementation analysis in Escherichia coli. Plant Cell Physiol., 49, 1867-1878.
Keywords: Anabaena sp. PCC 7120; β-carotene; carotenoid; CrtR; CrtW; Nostoc punctiforme
Strain(s): 2095 
PubMed: 18987067
DOI: 10.1093/pcp/pcn169
Makino, T., Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Nozaki, H. 2019 Taxonomic re-examination of two NIES strains of “Chlamydomonas” within the Reticulata group of the genus Chloromonas (Volvocales, Chlorophyceae). Microb. Resour. Syst., 35, 13-23.
Keywords: Chlamydomonas gerloffii; Chlamydomonas subangulosa; Chloromonas difformis nom. nov.; Chloromonas typhlos; molecular phylogeny; morphology; taxonomy
Strain(s): 22152243 
Makino, W., Ban, S. 2000 Response of life history traits to food conditions in a cyclopoid copepod from an oligotrophic environment. Limnol. Oceanogr., 45, 396-407.
Strain(s): 282 
DOI: 10.4319/lo.2000.45.2.0396
Makino, W., Ban, S. 2003 Fecal pellet production between molts in a cyclopoid copopod: patterns, individual variability and implications for growth and development. Hydrobiologia, 501, 101-107.
Keywords: Cyclops; molt; fecal pellet; variations; growth and development
Strain(s): 282 
DOI: 10.1023/A:1026211520190
Makita, Y., et al. 2021 Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nat. Commun., 12, 3593 (article ID).
Strain(s): 2893 
PubMed: 34135337
DOI: 10.1038/s41467-021-23741-5
Makiuchi, T., Nara, T., Annoura, T., Hashimoto, T., Aoki, T. 2007 Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups. Gene, 394(1-2), 78-86.
Keywords: gene fusion; de novo pyrimidine biosynthesis; lateral gene transfer; evolutionary marker
Strain(s): 48 
DOI: 10.1016/j.gene.2007.02.009
Malone, C. F. S., Genuário, D. B., Vaz, M. G. M. V., Fiore, M. F., Sant’Anna, C. L. 2021 Monilinema gen. nov., a homocytous genus (Cyanobacteria, Leptolyngbyaceae) from saline‐alkaline lakes of Pantanal wetlands, Brazil. J. Phycol., 57, 473-483.
Strain(s): 3755 
PubMed: 33211341
DOI: 10.1111/jpy.13106
Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2019 Fatty acid content and profile of the novel strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) cultivated at reduced nitrogen and phosphorusconcentrations. J. Phycol., 55, 1154-1165.
Keywords: Coccomyxa; fatty acid profile lipid; nitrogen and phosphorus deprivation; Trebouxiophyceae
Strain(s): 216622522353 
PubMed: 31318981
DOI: 10.1111/jpy.12903
Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2021 A new species of freshwater algae Nephrochlamys yushanlensis sp. nov. (Selenastraceae, Sphaeropleales) and its lipid accumulation during nitrogen and phosphorus starvation. J. Phycol., 57, 606-618.
Strain(s): 2166 
PubMed: 33296071
DOI: 10.1111/jpy.13116
Man-Aharonovich, D., Philosof, A., Kirkup, B. C., Le Gall, F., Yogev, T., Berman-Frank, I., Polz, M. F., Vaulot, D., Béjà, O. 2010 Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J., 4, 1044-1052.
Keywords: picoeukaryotes; PPEs; psbA; transcripts; Mediterranean Sea; diversity
Strain(s): 258826822687 
PubMed: 20237514
DOI: 10.1038/ismej.2010.25
Manali, K. M., Arunraj, R., Ramakrishnan, G. S., Ramya, M. 2019 Development of sensitive and specific multiplex PCR method for the detection of microcystin producing cyanobacteria in spirulina food supplements. Food Sci. Biotechnol., 28, 609-614.
Keywords: Spirulina food supplement; Multiplex PCR; Microcystin; Arthrospira platensis; Cyanotoxin
Strain(s): 843 
PubMed: 30956874
DOI: 10.1007/s10068-018-0476-0
Manali, KM., Arunraj, R., Kumar, T., Ramya, M. 2017 Detection of microcystin producing cyanobacteria in Spirulina dietary supplements using multiplex HRM quantitative PCR. J. Appl. Phycol., 29, 1279-1286.
Keywords: Microcystin; Arthrospira platensis; Multiplex HRM qPCR; Dietary supplements; Liquid; chromatography–high-resolution mass spectrometr
Strain(s): 843 
DOI: 10.1007/s10811-016-1011-4
Mano, H., Okamoto, S. 2016 Preliminary ecological risk assessment of 10 PPCPs and their contributions to the toxicity of concentrated surface water on an algal species in the middle basin of Tama River. J. Water Environ. Technol., 14, 423-436.
Keywords: bioassay; environmental risk; hazard quotien
Strain(s): 35 
DOI: 10.2965/jwet.15-045
Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Suzuki, Y., Park, CB., Yasui, N., Kobayashi, K., Tanaka, Y., Yamashita, N., Minamiyama, M. 2017 Water quality comparison of secondary effluent and reclaimed water to ambient river water of southern Okinawa Island via biological evaluation. Environ. Monit. Assess., 189, 442 (article ID).
Keywords: Bioassay; Ecological risk; Feasibility study; Water reclamation; Water reuse
Strain(s): 35 
PubMed: 28791526
DOI: 10.1007/s10661-017-6160-7
Mao, F., He, Y., Gin, K. Y. 2020 Antioxidant responses in cyanobacterium Microcystis aeruginosa caused by two commonly used UV filters, benzophenone-1 and benzophenone-3, at environmentally relevant concentrations. J. Hazard. Mater., 396, 122587 (article ID).
Keywords: Benzophenone-1; Benzophenone-3; Cyanobacteria; Oxidative stress
Strain(s): 843 
PubMed: 32335379
DOI: 10.1016/j.jhazmat.2020.122587
Mao, F., He, Y., Gin, KY. 2018 Evaluating the joint toxicity of two benzophenone-type UV filters on the Ggreen alga Chlamydomonas reinhardtii with response surface methodology. Toxics, 6, 8 (article ID).
Keywords: Chlamydomonas reinhardtii; benzophenone-1; benzophenone-3; joint toxicity; response surface methodology
Strain(s): 2463 
PubMed: 29320457
DOI: 10.3390/toxics6010008
Mao, F., He, Y., Kushmaro, A., Gin, KY. 2017 Effects of benzophenone-3 on the green alga Chlamydomonas reinhardtii and the cyanobacterium Microcystis aeruginosa. Aquat. Toxicol., 193, 1-8.
Keywords: Benzophenone-3; Toxicity; Green algae; Cyanobacteria; Photosynthesis; Uptake
Strain(s): 8432463 
PubMed: 28992446
DOI: 10.1016/j.aquatox.2017.09.029
Marie, D., Le Gall, F., Edern, R., Gourvil, P., Vaulot, D. 2017 Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. J. Phycol., 53, 271-282.
Keywords: antibiotics; BSA; flow cytometry; microalgal; cultures; nanoeukaryotes; phytoplankton; picoeukaryotes;; single cell sorting
Strain(s): 2672 
PubMed: 27878810
DOI: 10.1111/jpy.12495
Marin, B. 2012 Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist, 163, 778-805.
Keywords: Marsupiomonadales; Marsupiomonas; Pedinomonas; Pedinophyceae; Resultor; Resultomonas
Strain(s): 252483 
PubMed: 22192529
DOI: 10.1016/j.protis.2011.11.004
Marin, B., Melkonian, M. 1994 Flagellar hairs in prasinophytes (Chlorophyta): ultrastructure and distribution on the flagellar surface. J. Phycol., 30, 659-678.
Keywords: flagellar hairs; Mamiella; Mantoniella; Nephroselmis; Prasinophyceae; Pseudoscourfieldia; Pterosperma; Pyramimonas; Scherffelia; ultrastructure
Strain(s): 221483485 
DOI: 10.1111/j.0022-3646.1994.00659.x
Marin, B., Melkonian, M. 1999 Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist, 150, 399-417.
Strain(s): 475 
PubMed: 10714774
DOI: 10.1016/S1434-4610(99)70041-6
Marin, B., Melkonian, M. 2010 Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist, 161, 304-336.
Keywords: prasinophytes; SSU rDNA; LSU rDNA; ITS2; systematics; freshwater; Monomastigales; Dolichomastigales; Mamiellales; Monomastigaceae; Dolichomastigaceae; Crustomastigaceae; Bathycoccaceae
Strain(s): 252255360483 
PubMed: 20005168
DOI: 10.1016/j.protis.2009.10.002
Marron, A. O., Ratcliffe, S., Wheeler, G. L., Goldstein, R. E., King, N., Not, F., de Vargas, C., Richter, D. J. 2016 The evolution of silicon transport in eukaryotes. Mol. Biol. Evol., 33, 3226–3248.
Keywords: silicon; eukaryotes; SIT, Lsi2; convergent evolution; transporter
Strain(s): 2687 
PubMed: 27729397
DOI: 10.1093/molbev/msw209
Marshall, J. A., Hallegraeff, G. M. 1999 Comparative ecophysiology of the harmful alga Chattonella marina (Raphidophyceae) from South Australian and Japanese waters. J. Plankton Res., 21, 1809-1822.
Strain(s): 118 
DOI: 10.1093/plankt/21.10.1809
Marshall, J. A., Hovenden, M., Oda, T., Hallegraeff, G. M. 2002 Photosynthesis does influence superoxide production in the ichthyotoxic alga Chattonella marina (Raphidophyceae). J. Plankton Res., 24, 1231-1236.
Strain(s): 118 
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Marshall, J. A., Munday, B., Yoshizawa, Y., Hallegraeff, G. M. 2001 Effect of irradiance of superoxide production by Chattonella marina (Raphidophyceae) from south Australia and Japan. In Harmful Algal Blooms 2000, Eds. by Hallegraeff et al., UNESCO 2001., pp. 316-319.
Strain(s): 118 
Marshall, J. A., Newman, S. 2002 Differences in photoprotective pigment production between Japanese and Australian strains of Chattonella marina (Raphidophyceae). J. Exp. Mar. Biol. Ecol., 272, 13-27.
Keywords: ultraviolet radiation; microalgae; raphidophytes; Chattonella; mycosporine amino acids; pigments; xanthophyll cycle; stratospheric ozone depletion
Strain(s): 1118 
DOI: 10.1016/S0022-0981(02)00034-5
Marshall, J. A., Nichols, P. D., Hallegraeff, G. M. 2002 Chemotaxonomic survey of sterols and fatty acids in six marine raphidophyte algae. J. Appl. Phycol., 14, 255-265.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella subsalsa; chemotaxonomy; fatty acids; Fibrocapsa japonica; Heterosigma akashiwo; Olisthodiscus luteus; phycotoxins; raphydophytes; sterols
Strain(s): 15118 
Maruyama, I., Ando, Y., Maeda, T., Hirayama, K. 1989 Uptake of vitamin B12 by various strains of unicellular algae Chlorella. Nippon Suisan Gakkaishi, 55, 1785-1790.
Strain(s): 48226687215721692175 
Maruyama, I., Nakamura, T., Matubayashi, T., Ando, Y., Maeda, T. 1986 Identification of the alga known as "marine Chlorella" as a member of the Eustigmatophyceae. Jpn. J. Phycol. (Sôrui), 34, 319-325.
Strain(s): 2146 
Maruyama, K. 1977 Classification of Chlorella strain by infrared absorption spectra of cell samples. Bot. Mag. Tokyo, 90, 67-77.
Strain(s): 2262276856872151216321702175 
DOI: 10.1007/BF02489470
Maruyama, K. 1977 Classification of Chlorella strains by cell appearance and group sera. Bot. Mag. Tokyo, 90, 57-66.
Strain(s): 2262276852151216321702175 
DOI: 10.1007/BF02489469
Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-i, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2007 Centromere dynamics in the primitive red alga Cyanidioschyzon merolae. Plant J., 49, 1122-1129.
Keywords: centromere; CENH3; chromosome segregation; Cyanidioschyzon merolae
Strain(s): 3377 
PubMed: 17319844
DOI: 10.1111/j.1365-313X.2006.03024.x
Maruyama, S., Misawa, K., Iseki, M., Watanabe, M., Nozaki, H. 2008 Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes. BMC Evol. Biol., 8, 151 (article ID).
Strain(s): 48 
PubMed: 18485228
DOI: 10.1186/1471-2148-8-151
Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-I, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2004 The minimal eukaryotic ribosomal DNA units in the primitive red algae Cyanidioschyzon merolae. DNA Res., 11, 83-91.
Keywords: BAC library; Genome organization; Nucleolus
Strain(s): 3377 
PubMed: 15449541
DOI: 10.1093/dnares/11.2.83
Mary, I., Tu, C.-J., Grossman, A., Vaulot, D. 2004 Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313. Microbiol., 150, 1271-1281.
Strain(s): 2887 
Masuda, I., Kamikawa, R., Ueda, M., Oyama, K., Yoshimatsu, S., Inagaki, Y., Sako, Y. 2011 Mitochondrial genomes from two red tide forming raphidophycean algae Heterosigma akashiwo and Chattonella marina var. marina. Int. J. Syst. Evol. Microbiol., 10, 130-137.
Keywords: Chattonella; Genome evolution; Heterosigma; Mitochondrial genome; Red tide
Strain(s): 115121557558603 
DOI: 10.1016/j.hal.2010.08.004
Mathiot, C., Ponge, P., Gallard, B., Sassi, J.-F., Delrue, F., Le Moigne, N. 2019 Microalgae starch-based bioplastics: screening of ten strains and plasticization of unfractionated microalgae by extrusion. Carbohydr. Polym., 208/, 142-151.
Keywords: Microalgae; Bioplastics; Starch; Plasticization; Extrusion
Strain(s): 942272152217321952280 
PubMed: 30658785
DOI: 10.1016/j.carbpol.2018.12.057
Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Aeruginosins 102-A and B, new thrombin inhibitors from the cyanobacterium Microcystis viridis (NIES-102). Tetrahedron, 52, 14501-14506.
Strain(s): 102 
DOI: 10.1016/0040-4020(96)00890-3
Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Radiosumin, a trypsin inhibitor from the blue-green alga Plectonema radiosum. J. Org. Chem., 61, 8648-8650.
Strain(s): 515 
DOI: 10.1021/jo961130m
Matsuda, Y., Shimada, T., Sakamoto, Y. 1992 Ammonium ions control gametic differentiation and dedifferentiation in Chlamydomonas reinhardtii. Plant Cell Physiol., 33, 909-914.
Keywords: cell cycle progression; Chlamydomonas reinhardtii; NH4+ starvation; organic nitrogen compounds; sexual reproduction
Strain(s): 2238 
DOI: 10.1093/oxfordjournals.pcp.a078340
Matsumoto, C., Sugiyama, T., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. IX. Further comparative studies on Chlorella and spinach leaf ribulose-1,5-diphosphate carboxylase. Arch. Biochem. Biophys., 135, 282-287.
Strain(s): 2170 
PubMed: 5391472
DOI: 10.1016/0003-9861(69)90541-4
Matsumoto, H., Takechi, K., Sato, H., Takio, S., Takano, H. 2012 Treatment with antibiotics that interfere with peptidoglycan biosynthesis inhibits chloroplast division in the desmid Closterium. PLoS One, 7, e40734 (article ID).
Strain(s): 67 
PubMed: 22815801
DOI: 10.1371/journal.pone.0040734
Matsumoto, M., Mayama, S., Nemoto, M., Fukuda, Y., Muto, M., Yoshino, T., Matsunaga, T., Tanaka, T. 2014 Morphological and molecular phylogenetic analysis of the high triglyceride-producing marine diatom, Fistulifera solaris sp. nov. (Bacillariophyceae). Phycol. Res., 62, 257-268.
Keywords: 18S rDNA; JPCC DA0580; marine diatom; morphometric analyses
Strain(s): 2722 
DOI: 10.1111/pre.12066
Matsumoto, T., Kawachi, M., Miyashita, H., Inagaki, Y. 2012 Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. J. Plant Res., 125, 705-711.
Keywords: Plastid replacement; Tertiary endosymbiosis; Serial secondary endosymbiosis
Strain(s): 14111868 
PubMed: 22441568
DOI: 10.1007/s10265-012-0486-6
Matsumoto, T., Shinozaki, F., Chikuni, T., Yabuki, A., Takishita, K., Kawachi, M., Nakayama, T., Inouye, I., Hashimoto, T., Inagaki, Y. 2011 Green-colored plastids in the dinoflagellate genus Lepidodinium are of core Chlorophyte origin. Protist, 162, 268-276.
Strain(s): 626141918682432 
PubMed: 20829107
DOI: 10.1016/j.protis.2010.07.001
Matsunaga, N., Uehara, A., Murase, N., Kuriyoma, A. 2018 Cryopreservation of Spirulina (Arthrospira) platensis NIES-46 by snap-freezing considering trichome morphology. Cryobiology and Cryotechnology, 64, 75-83.
Keywords: Spirulina (Arthrospira) platensis; cyanobacteria; snap-freezing; cryopreservation; trichome morphology
Strain(s): 46 
DOI: 10.20585/cryobolcryotechnol.64.2_75
Matsunaga, S., Hori, T., Takahashi, T., Kubota, M., Watanabe, M., Okamoto, K., Masuda, K., Sugai, M. 1998 Discovery of signaling effect of UV-B/C light in the extended UV-A/blue-type action spectra for step-down and step-up photo-phobic responses in the unicellular flagellate alga Euglena gracilis. Protoplasma, 201, 45-52.
Keywords: action spectra; blue light; Euglena; photophobic responses; ultraviolet light
Strain(s): 48 
DOI: 10.1007/BF01280710
Matsunaga, S., Takahashi, T., Watanabe, M., Sugai, M., Hori, T. 1999 Control by ammonium ion of the change from step-up to step-down photophobically responding cells in the flagellate alga Euglena gracilis. Plant Cell Physiol., 40, 213-221.
Keywords: ammonium ion; blue light; Euglena; greening; photophobic responses
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a029530
Matsunaga, S., Watanabe, S., Sakaushi, S., Miyamura, S., Hori, T. 2003 Screening effect diverts the swimming directions from diaphototactic to positive phototactic in a disk-shaped green flagellate Mesostigma viride. Photochem. Photobiol., 77, 324-332.
Strain(s): 476477 
PubMed: 12685662
DOI: 10.1562/0031-8655(2003)077<0324:SEDTSD>2.0.CO;2
Matsuo, E., Inagaki, Y. 2018 Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates. PeerJ, 6, e5345 (article ID).
Strain(s): 1868 
PubMed: 30083465
DOI: 10.7717/peerj.5345
Matsuo, M., Katahata, A., Satoh, S., Matsuzaki, M., Nomura, M., Ishida, K. I., Inagaki, Y., Obokata, J. 2018 Characterization of spliced leader transsplicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer. PLoS One, 13, e0200961 (article ID).
Strain(s): 4060 
PubMed: 30024971
DOI: 10.1371/journal.pone.0200961
Matsushita, T., Kobayashi, Y., Nakamura, K., Matsui, Y., Ohno, K. 2010 Effect of transmembrane pressure on geosmin release from Cyanobacterial cell during microfiltration. Water Practice & Technology, 5, wpt2010049 (article ID).
Keywords: Cyanobacteria; geosmin; microfiltration; water treatment
Strain(s): 824 
DOI: 10.2166/wpt.2010.049
Matsuzaki, M. et al. 2004 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature, 428, 653-657.
Strain(s): 13323377 
PubMed: 15071595
DOI: 10.1038/nature02398
Matsuzaki, R., Hara, Y., Nozaki, H. 2012 A taxonomic revision of Chloromonas reticulata (Volvocales, Chlorophyceae), the type species of the genus Chloromonas, based on multigene phylogeny and comparative light and electron microscopy. Phycologia, 51, 74-85.
Keywords: Chloromonadinia; Chloromonas; Chloromonas chlorococcoides comb. nov.; Chloromonas lineage; Chloromonas typhlos comb. nov.; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales
Strain(s): 447 
DOI: 10.2216/11-18.1
Matsuzaki, R., Hara, Y., Nozaki, H. 2014 A taxonomic study of snow Chloromonas species (Volvocales, Chlorophyceae) based on light and electron microscopy and molecular analysis of cultured material. Phycologia, 53, 293–304.
Keywords: Chloromonadinia; Chloromonas fukushimae; Chloromonas tenuis; Molecular phylogeny; Morphology; Snow algae; Taxonomy; Ultrastructure
Strain(s): 2379238033893390 
DOI: 10.2216/14-3.1
Matsuzaki, R., Kawachi, M., Nozaki, H., Nohara, S., Suzuki, I. 2020 Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials. PLoS One, 15, e0238265 (article ID).
Strain(s): 3389339044524453 
PubMed: 2845939
DOI: 10.1371/journal.pone.0238265
Matsuzaki, R., Kawai-Toyooka, H., Hara, Y., Nozaki, H. 2015 Revisiting the taxonomic significance of aplanozygote morphologies of two “cosmopolitan” snow species of the genus Chloromonas (Volvocales, Chlorophyceae). Phycologia, 54, 491–502.
Keywords: Chloromonas brevispina; Chloromonas krienitzii sp. nov.; Chloromonas nivalis; Molecular phylogeny; Morphology; Snow algae; Ultrastructure
Strain(s): 23792380338937523753 
DOI: 10.2216/15-33.1
Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2010 Light and electron microscopy and molecular phylogenetic analyses of Chloromonas pseudoplatyrhyncha (Volvocales, Chlorophyceae). Phycol. Res., 58, 202-209.
Keywords: Chloromonadinia; Chloromonas; Chloromonas lineage; molecular phylogeny; morphology; pyrenoid; ultrastructure; Volvocales
Strain(s): 2563 
DOI: 10.1111/j.1440-1835.2010.00577.x
Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2013 Description of Chloromonas kasaiae sp. nov. (Volvocales, Chlorophyceae), based on comparative electron microscopy and molecular data. Phycologia, 52, 239-245.
Keywords: Chloromonadinia; Chloromonas kasaiae; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales
Strain(s): 2862 
DOI: 10.2216/12-083.1
Matsuzaki, R., Nozaki, H., Kawachi, M. 2018 Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species. PLoS One, 13, e0193603 (article ID).
Strain(s): 4642379238025632862338937073753 
PubMed: 29570718
DOI: 10.1371/journal.pone.0193603
Matsuzaki, R., Nozaki, H., Takeuchi, N., Hara, Y., Kawachi, M. 2019 Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov. PLoS One, 14, e0210986 (article ID).
Strain(s): 46423792380256328623389370737534284 
PubMed: 30677063
DOI: 10.1371/journal.pone.0210986
Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Kanesaki, Y., Yoshikawa, H., Mori, T., Nozaki, H. 2021 The Rubisco small subunits in the green algal genus Chloromonas provide insights into evolutionary loss of the eukaryotic carbon-concentrating organelle, the pyrenoid. BMC Ecol. Evol., 21, 11 (article ID).
Keywords: Chloromonas; Evolution; Green algae; Hydrophobicity of RBCS helices; Pyrenoid; Pyrenoid loss; Rubisco small subunit (RBCS)
Strain(s): 14442442522072212221522422243249937534284 
PubMed: 33514317
DOI: 10.1186/s12862-020-01733-1
Matumura, H., Muto, S., Miyachi, S. 1982 Light-induced conversion of NAD+ to NADP+ in Chlorella cells. Biochim. Biophys. Acta, 679, 300-307.
Strain(s): 21602161 
DOI: 10.1016/0005-2728(82)90300-0
Mazalová, P., Šarhanová, P., Ondřej, V., Poulíčková, A. 2011 Quantificaion of DNA content in freshwater microalgae using flow cytometry: a modified protocol for selected green microalgae. Fottea, 11, 317-328.
Keywords: DNA content; flow cytometry; desmids; microalgae; standards; Micrasterias pinnatifida
Strain(s): 783 
DOI: 10.5507/fot.2011.030
McDonald, S. M., Plant, J. N. Worden, A. Z. 2010 The mixed lineage nature of nitrogen transport and assimilation in marine eukaryotic phytoplankton: a case study of Micromonas. Mol. Biol. Evol., 27, 2268-2283.
Keywords: nitrogen; Micromonas; Ostreococcus; green algae; green lineage; quantitative PCR; genomics; phylogeny
Strain(s): 2672 
PubMed: 20457585
DOI: 10.1093/molbev/msq113
McKay, R. M., Gibbs, S. P. 1989 Immunocytochemical localization of ribulose 1,5-bisphosphate carboxylase/oxygenase in light-limited and light-saturated cells of Chlorella pyrenoidosa. Protoplasma, 149, 31-37.
Keywords: pyrenoid; ribulose 1,5-bisphosphate carboxylase/oxygenase; Chlorella pyrenoidosa; immunocytochemistry
Strain(s): 6872142 
McKindles, K. M., Manes, M. A., DeMarco, J. R., McClure, A., McKay, R. M., Davis, T. W., Bullerjahn, G. S. 2020 Dissolved microcystin release coincident with lysis of a Microcystis-dominated bloom in western Lake Erie attributed to a novel cyanophage. Appl. Environ. Microbiol., 86, e01397-20.
Strain(s): 843 
PubMed: 32859600
DOI: 10.1128/AEM.01397-20
Mcmillan, R. 1957 Morphogenesis and polymorphism of Ankistrodesmus spp. J. Gen. Microbiol., 17, 658-677.
Strain(s): 219021942195 
DOI: 10.1099/00221287-17-3-658
Meglič, A., Pecman, A., Rozina, T., Leštan, D., Sedmak, B. 2016 Electrochemical inactivation of cyanobacteria and microcystin degradation using a boron-doped diamond anode - A potential tool for cyanobacterial bloom control. J. Environ. Sci., 53, 248-261.
Keywords: Cyanobacterial bloom control; Boron-doped diamond anode; Electro-oxidation; Microcystin degradation; Protein phosphatase-1 inhibition; Water remediation
Strain(s): 843 
PubMed: 28372749
DOI: 10.1016/j.jes.2016.02.016
Meriluoto, J., Codd, G. A. (eds.) 2005 TOXIC: cyanobacterial monitoring and cyanotoxin analysis. Acta Acad. Aboensis, ser, B, Vol. 65(1), 149 pp.
Strain(s): 107 
Meriluoto, J., Karlsson, K., Spoof, L. 2004 High-throughput screening of ten microcystins and nodularins, cyanobacterial peptide hepatotoxins, by reversed-phase liquid chromatography-electrospray ionization mass spectrometry. Chromatographia, 59, 291-298.
Keywords: columun liquid chromatography; mass spectrometry detection; microcystins and nodularins; cyanobacteria; toxins
Strain(s): 107 
DOI: 10.1365/s10337-003-0163-y
Merola, A., Castaldo, R., De Luca, P., Gambardella, R., Musacchio, A., Taddei, R. 1981 Revision of Cyanidium caldarium. Three species of acidophilic algae. Giorn Bot. Ital., 115, 189-195.
Strain(s): 550 
DOI: 10.1080/11263508109428026
Metcalf, J. S., Bell, S. G., Codd, G. A. 2000 Production of novel polyclonal antibodies against the cyanobacterial toxin microcystin-LR and their application for the detection and quantification of microcystins and nodularin. Water Res., 34, 2761-2769.
Keywords: cyanobacteria; blue-green algae; microcystin; toxins; antibodies; immunoassays
Strain(s): 42102103104595 
DOI: 10.1016/S0043-1354(99)00429-7
Miao, H., Beardall, J., Gao, K. 2018 Calcification moderates the increased susceptibility to UV radiation of the coccolithophorid Gephryocapsa oceanica grown under elevated CO2 concentration: Evidence based on calcified and non-calcified cells. Photochem. Photobiol., 94, 994-1002.
Strain(s): 1318 
PubMed: 29701244
DOI: 10.1111/php.12928
Miao, M., Li, Z., Hwang, E.-A., Kim, H.-K., Lee, H., Kim, B.-H. 2020 Two new benthic diatoms of the genus Achnanthidium (Bacillariophyceae) from the Hangang River, Korea. Diversity-Basel, 12, 285 (article ID).
Keywords: Achnanthidium; freshwater; molecular phylogeny; morphology; rbcL; SSU; taxonomy
Strain(s): 372407410411412413414 
DOI: 10.3390/d12070285
Mihara, S. 1961 Changes in glucosamine content of Chlorella cells during the course of their life cycle. Plant Cell Physiol., 2, 25-29.