Reference list published in 2019 and 2020

1. Reference list published in 2020

Reference Strain (s)
Kayama, M., Chen, J.-F., Nakada, T., Nishimura, Y., Shikanai, T., Azuma, T., Miyashita, H., Takaichi, S., Kashiyama, Y., Kamikawa, R.  2020  A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems.  BMC Biol., 18, 126 (article ID). Chlamydomonad sp. NIES-4405
Matsuzaki, R., Kawachi, M,, Nozaki, H., Nohara, S., Suzuki, I.  2020  Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials.  PLoS One, e0238265 (article ID). Chloromonas fukushimae NIES-3389, NIES-3390, NIES-4452, NIES-4453
Saito, T., Ichihara, T., Inoue, H., Uematsu, T., Hamada, S., Watanabe, T., Takimura, Y., Webb, J.  2020  Comparison of areal productivity of Nannochloropsis oceanica between lab-scale and industrial-scale raceway pond.  Mar. Biotechnol. Nannochloropsis oceanica NIES-2145
Hirooka, S., Tomita, R., Fujiwara, T., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., Miyagishima, S.  2020  Efcient open cultivation of cyanidialean red algae in acidifed seawater.  Sci Rep, 10, 13794 (article ID). Cyanidium caldarium NIES-2137,
Cyanidioschyzon merolae NIES-3377
Nitta, N. et al.  2020  Raman image-activated cell sorting.  Nat. Commun., 11, 3452 (article ID). Chlamydomonas reinhardtii NIES-2463,
Euglena gracilis NIES-48,
Hamakko caudatus NIES-2293,
さらに表示する
Kurita, T., Moroi, K., Iwai, M., Okazaki, K., Shimizu, S., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T.  2020  Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES‐2145.  Genes Cells Nannochloropsis oceanica NIES-2145
Morimoto, D., Yoshida, T., Sawayama, S.  2020  Draft genome sequence of the astaxanthin-producing microalga Haematococcus lacustris Strain NIES-144.  Microbiol Resour Announc., 9, e00128-20 (article ID). Haematococcus lacustris NIES-144
Jiang, Y., Liu, Y.  2020  Influence of increased nutrient supply on Microcystis aeruginosa at cellular and proteomic levels.  Aquat. Microb. Ecol., 85, 47-58. Microcystis aeruginosa NIES-843
Niu, C., Du, G., Li, R., Wang, C.  2020  Interactive effects of increased temperature, elevated pCO2 and different nitrogen sources on the coccolithophore Gephyrocapsaoceanica.  PLoS One, e0235755 (article ID). Gephyrocapsa oceanica NIES-1318
Akizuki, S., Cuevas-Rodríguezb, F., Toda, T.  2020  Nitrification of anaerobic digestate using a consortium of microalgae and nitrifiers in an open photobioreactor with moving bed carriers.  Chemosphere Chlorella sorokiniana NIES-2173
Tomita-Yokotani, K., Kimura, S., Ong, M., Ajioka, R., Igarashi, Y., Fujishiro, H., Katoh, H., Hashimoto, H., Mita, H., Yokobori, S., Ohmori, M.  2020  Tolerance of dried cells of a terrestrial cyanobacterium, Nostoc sp. HK-01 to temperature cycles, helium-ion beams, ultraviolet radiation (172 and 254 nm), and gamma rays: Primitive analysis for space experiments.  Eco-Engineering, 32, 47-53. Nostoc sp. NIES-2109
Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D.  2020  Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.  FEMS Microbiol. Ecol., 76, 513-523. Nephroselmis astigmatica NIES-252,
Micromonas pusilla NIES-1411
Susanti, H., Yoshida, M., Nakayama, T., Nakada, T., Watanabe, M. M.  2020  A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov.  Phytotaxa, 432, 65-80. Ostravamonas trianguloculus NIES-4317, NIES-4318
Cho, Y.-L., Lee, Y.-C., Hsu, L.-C., Wang, C.-C., Chen, P.-C., Liu, S.-L., Teah, H.-Y., Liu, Y.-T., Tzou, Y.-M.  2020  Molecular mechanisms for Pb removal by Cyanidiales: a potential biomaterial applied in thermo-acidic conditions.  Chem. Eng. J., 401, 125828 (article ID). Cyanidioschyzon merolae NIES-3377,
Cyanidium caldarium NIES-551
Liu, S.-L., Chiang, Y.-R., Yoon, H. S., Fu, H.-Y.  2020  Comparative genome analysis reveals Cyanidiococcus gen. nov., a new extremophilic red algal genus sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta).  J. Phycol. Cyanidioschyzon merolae NIES-3377
Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y.v  2020  Cyanobacterial classification with the toxicity using MALDI Biotyper.  J. Am. Soc. Mass Spectrom., 31, 1572-1578. Acaryochloris marina NIES-2412,
Anabaenopsis sp. NIES-1698,
Aphanizomenon flos-aquae NIES-81,
さらに表示する
Isozaki, A., Nakagawa, Y., Loo, M. H., Shibata, Y., Tanaka, N., Setyaningrum, D. L., Park, J.-W., Shirasaki, Y., Mikami, H., Huang, D., Tsoi, H., Riche, C. T., Ota, T., Miwa, H., Kanda, Y., Ito, T., Yamada, K., Iwata, O., Suzuki, K., Ohnuki, S., Ohya, Y., Kato, Y., Hasunuma, T., Matsusaka, S., Yamagishi, M., Yazawa, M., Uemura, S., Nagasawa, K., ,Watarai, H. Di Carlo, D., Goda, K.  2020  Sequentially addressable dielectrophoretic array for high-throughput sorting of large-volume biological compartments.v  Sci. Adv., 6, eaba6712 (article ID). Euglena gracilis NIES-48
Tomaru, Y., Kimura, K.  2020  Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms.  Diversity-Basel, 12, 225 (article ID). Chaetoceros setoensis NIES-3712,
Chaetoceros tenuissimus NIES-3714, NIES-3715
Han, S.-I., Chang, S. H., Lee, C., Jeon, M. S., Heo, Y. M., Kim, S.  2020  Astaxanthin biosynthesis promotion with pH shock in the green microalga, Haematococcus lacustris.  Bioresour. Technol., 314, 123725 (article ID). Haematococcus lacustris NIES-144
Zhu, J., Wakisaka, M.  2020  Application of lignosulfonate as the growth promotor for freshwater microalga Euglena gracilis to increase productivity of biomass and lipids.  Fuel, 283, 118920 (article ID). Euglena gracilis NIES-48
Pascual, G., Sano, D., Sakamaki, T., Nishimura, O.  2020  Effects of chemical interaction of nutrients and EDTA on metals toxicity to Pseudokirckneriella subcapitata.  Ecotox. Environ. Safe., 203, 110966 (article ID). Raphidocelis subcapitata NIES-35
Azizi, M., Moteshafi, H., Hashemi, M.  2020  A novel CO2 steady feeding based on the pH steady strategy data in the Haematococcus pluvialis cultivation to maximize the cell growth and carbon bio-sequestration.  Bioresour. Technol., 314, 123752 (article ID). Haematococcus lacustris NIES-144
Xu, M., de Boer, H., Olafsdottir, E. S., Omarsdottir, S., Heidmarsson, S.  2020  Phylogenetic diversity of the lichenized algal genus Trebouxia (Trebouxiophyceae, Chlorophyta): a new lineage and novel insights from fungal-algal association patterns of Icelandic cetrarioid lichens (Parmeliaceae, Ascomycota).  Bot. J. Linnean Soc. Trebouxia anticipata NIES-1271,
Trebouxia corticola NIES-1278,
Trebouxia higginsiae NIES-1289
Qian, J., Liu, X, Ban, S, Fujiwara, M, Kodera, T, Akizuki, S, Toda, T.  2020  pH treatments in continuous cultivation to maximize microalgal production and nutrient removal from anaerobic digestion effluent of aquatic macrophytes.  J. Appl. Phycol. Chlorella sorokiniana NIES-2173
Churro, C., Semedo-Aguiar, A. P., Silva, A.D., Pereira-Leal, J. B., Leite, R. B.  2020  A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria.  Sci Rep, 10, 8679 (article ID). Calothrix sp. NIES-2100,
Nostoc linckia NIES-25,
Nostoc sp. NIES-2111
Pham, T.-L., Tran, T. H. Y., Hoang, N. S., Ngo, X. Q., Tran, T. T.  2020  Co-occurrence of microcystin-and geosminproducing cyanobacteria in the Tri An Reservoir, a drinking-water supply in Vietnam.  Fundam. Appl. Limnol., 193, 299-311. Microcystis aeruginosa NIES-102
Deka, D., Marwein, R., Chikkaputtaiah, C., Kaki, S. S., Azmeera, T., Boruah, H. P. D., Velmurugan, N.  2020  Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry.  Process Biochem., 96, 90-101. Isochrysis galbana NIES-2590
Tharek, A., Jamaluddin, H., Salleh, M. M., Yahya, N. A., Kaha, M., Hara, H., Iwamoto, K., Mohamad, S. E.  2020  Astaxanthin production by tropical microalgae strains isolated from environment in Malaysia.  Asian Jr. of Microbiol. Biotech. Env. Sc., 22, 168-173. Haematococcus lacustris NIES-144
Nozaki, H., Mahakham, W., Heman, W., Matsuzaki, R., Kawachi, M.  2020  A new preferentially outcrossing monoicous species of Volvox sect. Volvox (Chlorophyta) from Thailand.  PLoS One, e0235622 (article ID). Colemanosphaera angeleri NIES-3382,
Colemanosphaera charkowiensis NIES-3383,
Volvox capensis NIES-3874,
さらに表示する
Ohbayashi, R., Hirooka, S., Onuma, R., Kanesaki, Y., Hirose, Y., Kobayashi, Y., Fujiwara, T., Furusawa, C., Miyagishima, S.  2020  Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria.  Front. Microbiol., 11, 786 (article ID). Geminocystis sp. NIES-3708
Shen, Q., Shimizu, K., Miao, H., Tsukino, S., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M.  2020  Effects of elevated nitrogen on the growth and geosmin productivity of Dolichospermum smithii.  Environ. Sci. Pollut. Res. Dolichospermum smithii NIES-824
Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N.  2020  Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean.  Microbiol Resour Announc., 9, e00367-20 (article ID). Triparma laevis f. inornata NIES-2565
Watanabe, S.  2020  Reclassification of Chlamydomonas monticola as Heterochlamydomonas (Volvocales, Chlorophyceae).  Phycol. Res. Heterochlamydomonas monticola NIES-157
Krausfeldt, L. E., Farmer, A. T., Castro, H. F., Boyer, G. L., Campagna, S. R., Wilhelm, S. W.  2020  Nitrogen flux into metabolites and microcystins changes in response to different nitrogen sources in Microcystis aeruginosa NIES‐843.  Environ. Microbiol., 22, 2419-2431. Microcystis aeruginosa NIES-843
Antonaru, L. A., Cardona, T., Larkum, A. W. D., Nürnberg, D. J.  2020  Global distribution of a chlorophyll f cyanobacterial marker.  ISME J., 14, 2275–2287. Calothrix parasitica NIES-267,
Calothrix sp. NIES-3974,
Hydrococcus rivularis NIES-593
Ng, F.-L., Phang, S.-M., Iwamoto, M., Manaka, T., Thong, C.-H., Shimosawa, K., Periasamy, V., Kumar, G. G., Yunus, K., Fisher, A. C.  2020  Algal biophotovoltaic devices: Surface potential studies.  ACS Sustain. Chem. Eng., 8, 10511-10520. Chlorella vulgaris var. vulgaris NIES-642
Nakanishi, A., Iritani, K., Sakihama, Y., Ozawa, N., Mochizuki, A., Watanabe, M.  2020  Construction of cell-plastics as neo-plastics consisted of cell-layer provided green alga Chlamydomonas reinhardtii covered by two-dimensional polymer.  AMB Express, 10, 112 (article ID). Chlamydomonas reinhardtii NIES-2235
Yamashita, K., Tokunaga, E.  2020  Noninvasive and safe cell viability assay for Paramecium using natural pigment extracted from food.  Sci Rep, 10, 10996 (article ID). Chlamydomonas reinhardtii NIES-2238
Kereya, M. S., Mariam, I., Shaikh, K. M., Nesamma, A. A., Jutur, P. P.  2020  Photosynthetic carbon partitioning and metabolic regulation in response to very-low and high CO2 in Microchloropsis gaditana NIES 2587.  Front. Plant Sci., 981 (article ID). Microchloropsis gaditana NIES-2587
Miyauchi, H., Okada, K., Fujiwara, S., Tsuzuki, M.  2020  Characterization of CO2 fixation on algal biofilms with an infrared gas analyzer and importance of a space-rich structure on the surface.  Algal Res., 46, 101814 (article ID). Parachlorella kessleri NIES-2160
Hikihara, R., Yamasaki, Y., Shikata, T., Nakayama, N., Sakamoto, S., Kato, S., Hatate, H., Tanaka, R.  2020  Analysis of phytosterol, fatty acid, and carotenoid composition of 19 microalgae and 6 bivalve species.  J. Aquat. Food Prod. Technol., 29, 461-479. Chattonella marina var. antiqua NIES-1,
Heterosigma akashiwo NIES-10,
Skeletonema marinoi-dohrnii complex NIES-324
Onduka, T., Kono, K., Ito, M., Ohkubo, N., Hano, T., Ito, K., Mochida, K.  2020  Ecological risk assessment of an antifouling biocide triphenyl (octadecylamine) boron in the Seto Inland Sea, Japan.  Mar. Pollut. Bull., 157, 111320 (article ID). Skeletonema marinoi-dohrnii complex NIES-324
Nishimura. Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K-I., Hashimoto, T., Inagaki, Y., Ohkuma, M.  2020  Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista.  Front. Ecol. Evol., 8, 140 (article ID). Leucocryptos marina NIES-1335
Akizuki, S., Cuevas-Rodríguez, G., T. T.  2020  Anaerobic digestion effluent treatment using microalgae and nitrifiers in an outdoor raceway pond with fluidized carriers.  Water Sci. Technol. Chlorella sorokiniana NIES-2173
Yamaguchi, H., Suzuki, S., Kawachi, M.  2020  Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan.  Microbiol Resour Announc., 9, e00052-20 (article ID). Microcystis aeruginosa NIES-3787, NIES-3804, NIES-3806, NIES-3807
Chamizo, S., Adessi, A., Certini, G., De Philippis, R.  2020  Cyanobacteria inoculation as a potential tool for stabilization of burned soils.  Restor. Ecol. Phormidium ambiguum NIES-2121,
Scytonema javanicum NIES-1956
Shikata, T., Taniguchi, E., Sakamoto, S., Kitatsuji, S., Yamasaki, Y., Yoshida, M., Oikawa, H.  2020  Phylogeny, growth and toxicity of the noxious red-tide dinoflagellate Alexandrium leei in Japan.  Reg. Stud. Mar. Sci., 36, 101265 (article ID). Nannochloropsis oculata NIES-2146
Harada, R., Hirakawa, Y., Yabuki, A., Kashiyama, Y., Maruyama, M., Onuma, R., Soukal, P., Miyagishima, S., Hampl, V., Tanifuji, G., Inagaki, Y.  2020  Inventory and evolution of mitochondrion-localized family a DNA polymerases in Euglenozoa.  Pathogens, 9, 257 (article ID). Eutreptiella gymnastica NIES-381
Kim, K., Yoon, Y., Cho, H., Hwang, S.  2020  Molecular probes to evaluate the synthesis and production potential of an odorous compound (2-methylisoborneol) in cyanobacteria.  Int. J. Environ. Res. Public Health, 17, 1933 (article ID). Anabaena cylindrica NIES-19,
Dolichospermum smithii NIES-824,
Pseudanabaena foetida var. intermedia NIES-512
Jiang, Y., Chen, Y., Yang, S., Li, R.  2020  Phylogenetic relationships and genetic divergence of paralytic shellfish toxin- and cylindrospermopsin- producing Cylindrospermopsis and raphidiopsis.  Harmful Algae, 93, 101792 (article ID). Raphidiopsis curvata NIES-932,
Raphidiopsis raciborskii NIES-991, NIES-1041
Kim, Y. E., Matter, I. A., Lee, N., Jung, M., Lee, Y. C., Choi, S. A., Lee, S. Y., Kim, J. R., Oh, Y. K.  2020  Enhancement of astaxanthin production by Haematococcus pluvialis using magnesium aminoclay nanoparticles.  Bioresour. Technol., 307, 123270 (article ID). Haematococcus lacustris NIES-144
Shizuka, K., Ikenaga, M., Murase, J., Nakayama, N., Matsuya, N., Kakino, W., Taruya, H., Maie, N.  2020  Diversity of 2-MIB-producing cyanobacteria in Lake Ogawara: microscopic and molecular ecological approaches.  Aquacult. Sci., 68, 9-23. Pseudanabaena cinerea NIES-4062, NIES-4063,
Pseudanabaena yagii NIES-4237, NIES-4238
Sekine, M., Yoshida, A., Akizuki, S., Kishi, M., Toda, T.  2020  Microalgae cultivation using undiluted anaerobic digestate by introducing aerobic nitrification–desulfurization treatment.  Wat. Sci. Tech. Chlorella sorokiniana NIES-2173
Moog, D., Nozawa, A., Tozawa, Y., Kamikawa, R.  2020  Substrate specifcity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red algaderived complex plastids.  Sci Rep, 10, 1167 (article ID). Nitzschia sp. NIES-3581
Karpf, S., Riche, C. T., Di Carlo, D., Goel, A., Zeiger, W. A., Suresh, A., Portera-Cailliau, C., Jalali, B.  2020  Spectro-temporal encoded multiphoton microscopy and fluorescence lifetime imaging at kilohertz frame-rates.  Nat. Commun., 11, 2062 (article ID). Euglena gracilis NIES-48
Qiu, X., Mukai, K., Shimasaki, Y., Wu, M., Chen, C., Lu, Y., Ichinose, H., Nakashima, T., Kato-Unoki, Y., Oshima, Y.  2020  Diurnal variations in expression of photosynthesis-related proteins in the harmful Raphidophyceae Chattonella marina var. antiqua.  J. Exp. Mar. Biol. Ecol., 527, 151361 (article ID). Chattonella marina var. antiqua NIES-1
Qiu, X., Chen, C., Shimasaki, Y., Mukai, K., Teramoto, A., Wu, M., Oshima, Y.  2020  Time-series responses in photosynthetic activity, 2-cysteine peroxiredoxin gene expression, and proteomics of Chattonella marina var. antiqua under different oxidative stress.  Harmful Algae, 94, 101808 (article ID). Chattonella marina var. antiqua NIES-1
Kamei-Ishikawa, N., Maeda, T., Soma, M., Yoshida, N., Sameshima, Y., Sasamoto, M., Higashiyama, Y., Touno, E., Ito, A.  2020  Tylosin degradation during manure composting and the effect of the degradation byproducts on the growth of green algae.  Sci. Total Environ., 718, 137295 (article ID). Raphidocelis subcapitata NIES-35
Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B.  2020   Extremophiles, 23, 635–647. Mastigocladus sp. NIES-592, NIES-3754,
Pelatocladus sp. NIES-4106
Hashizume, M., Yoshida, M., Demura, M., Watanabe, M. M.  2020  Culture study on utilization of phosphite by green microalgae.  J. Appl. Phycol., 32, 889–899. Coccomyxa subellipsoidea NIES-2166,
Chlorella vulgaris NIES-2170,
Tetradesmus obliquus NIES-2280
Feng, S., Liu, F., Zhu, S., Feng, P., Wang, Z., Yuan, Z., Shang, C., Chen, H.  2020  Performance of a microalgal-bacterial consortium system for the treatmentof dairy-derived liquid digestate and biomass production.  Bioresour. Technol., 306, 123101 (article ID). Chlorella vulgaris var. vulgaris NIES-227
Nagai, T.  2020  Sensitivity differences among seven algal species to 12 herbicides with various modes of action.  J. Pestic. Sci., 44, 225-232. Synechococcus leopoliensis NIES-3277
Harmon, J., Mikami, H., Kanno, H., Ito, T., Goda, K.  2020  Accurate classification of microalgae by intelligent frequency-division-multiplexed fluorescence imaging flow cytometry.  OSA Continuum, 3, 430-440. Hamakko caudatus NIES-2293,
Gloeomonas anomalipyrenoides NIES-3640
Sarai, C., Tanifuji, G., Nakayama, T., Kamikawa, R., Takahashi, K., Yazaki, E., Matsuo, E., Miyashita, H., Ishida, K-I., Iwataki, M., Inagaki, Y.  2020  Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis.  Proc. Nati. Acad. Sci. U. S. A., 117, 5364-5375. Lepidodinium chlorophorum NIES-1868
Liu, X., Fujiwara, M., Kodera, T., Watanabe, K., Akizuki, S., Kishi, M., Koyama, M., Toda, T., Ban, S.  2020  Conditions for continuous cultivation of Chlorella sorokiniana and nutrient removal from anaerobic digestion effluent of aquatic macrophytes.  Int. Biodeterior. Biodegrad., 149, 104923 (article ID). Chlorella sorokiniana NIES-2168
Azizi, M., Moteshafi, H., Hashemi, M.  2020  Distinctive nutrient designs using statistical approach coupled with light feeding strategy to improve the Haematococcus pluvialis growth performance and astaxanthin accumulation.  Bioresour. Technol., 300, 122594 (article ID). Haematococcus lacustris NIES-144
Mao, F., He, Y., Gin, K. Y.  2020  Antioxidant responses in cyanobacterium Microcystis aeruginosa caused by two commonly used UV filters, benzophenone-1 and benzophenone-3, at environmentally relevant concentrations.  J. Hazard. Mater., 396, 122587 (article ID). Microcystis aeruginosa NIES-843
Thakong, W., Shimizu, K., Kodato, M., Iwami, N., Whangchai, N., Itayama,T.  2020  Sequencing of 18S rRNA gene of Bdelloid rotifers and design of the primers  Maejo Int. J. Energ. Environ. Commun., 1-2, 55-63. Microcystis aeruginosa NIES-843
Jiang, Y., Liu, Y., Zhang, J.  2020  Antibiotic contaminants reduced the treatment efficiency of UV-C on Microcystis aeruginosa through hormesis.  Environ. Pollut., 261, 114193 (article ID). Microcystis aeruginosa NIES-843
Popin, R. V., Delbaje, E., Abreu, V.A.C., Rigonato, J., Dörr, F.A., Pinto, E., Sivonen, K., Fiore, M.F.  2020  Genomic and metabolomic analyses of natural products in Nodularia spumigena isolated from a shrimp culture pond.  Toxins, 12, Nodularia sp. NIES-3585
Hirose, Y., Misawa, N., Yonekawa, C., Nagao, N., Watanabe, M., Ikeuchi, M., Eki, T.  2020  Characterization of the genuine type 2 chromatic acclimation in the two Geminocystis cyanobacteria.  DNA Res., 24, 387-396. Geminocystis sp. NIES-3708, NIES-3709
Erratt, K. J., Creed, I. F., Trick, C. G.  2020  Differential drawdown of ammonium, nitrate, and urea by freshwater chlorophytes and Cyanobacteria.  J. Phycol. Microcystis aeruginosa NIES-88, NIES-90, NIES-102, NIES-843
Akizuki, S., Kishi, M., Cuevas-Rodríguez, G., Toda, T.  2020  Effects of different light conditions on ammonium removal in a consortium of microalgae and partial nitrifying granules.  Water Res., 171, 115445 (article ID). Chlorella sorokiniana NIES-2173
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M.  2020  Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102.  J. Genomics, 8, 1-6. Microcystis aeruginosa NIES-102
Kishi, M., Yamada, Y., Katayama, T., Matsuyama, T., Toda, T.  2020  Carbon mass balance in Arthrospira platensis culture with medium recycle and high CO2 supply.  Appl. Sci., 10, 228 (article ID). Arthrospira platensis NIES-39
Turmel, M., Otis, C., Lemieux, C.  2020  Complete mitogenome of the chlorophyte green alga Marsupiomonas sp. NIES 1824 (Pedinophyceae).  Mitochondrial DNA Part B-R, 5, 548-550. Marsupiomonas sp. NIES-1824
Sato, N., Yoshitomi, T., Mori-Moriyama, N.  2020  Characterization and biosynthesis of lipids in Paulinella micropora MYN1. Evidence for efficient integration of chromatophores into cellular lipid metabolism.  Plant Cell Physiol., 61, 869–881. Paulinella micropora NIES-4060
Kim, T. Y., Hong, J. E., Park, H. M., Lee, U. J., Lee, S-Y.  2020  Decontamination of low-level contaminated water from radioactive cesium and cobalt using microalgae.  J. Water Environ. Technol., 323, 903-908. Vacuoliviride crystalliferum NIES-2860
Sakomoto, T., Takabe,Y., Uemura, T., Masuda, T., Hoshikawa, Y.  2020  Feed utilisation of Chlorella vulgaris cultivated with aquaculture effluent.  J. Radioanal. Nucl. Chem., 18, 17-26. Chlorella vulgaris NIES-2170
Thakur, R., Shiratori, T., Ishida, K-I.  2020  Taxon-rich multigene phylogenetic analyses resolve the phylogenetic relationship among deep-branching Stramenopiles.  Protist, 5, 125682 (article ID). Pseudophyllomitus vesiculosus NIES-4114
Lu, Z., Dai, J., Zheng, L., Teng, Z., Zhang, Q., Qiu, D., Song, L.d  2020  Disodium 2-oxoglutarate promotes carbon flux into astaxanthin and fatty acid biosynthesis pathways in Haematococcus.  Bioresour. Technol., 299, 122612 (article ID). Haematococcus lacustris NIES-144
Nomura, M., Kamikawa, R., Ishida, K-I.  2020  Fine structureo bservation of feeding behavior, Nephroselmis spp.-derived chloroplast enlargement, and mitotic processes in the Katablepharid Hatena arenicola.  Protist, 171, 125714 (article ID). Nephroselmis sp. NIES-1417
Hang, L. T., Mori, K., Tanaka, Y., Morikawa, M., Toyama, T.  2020  Enhanced lipid productivity of Chlamydomonas reinhardtii with combination of NaCl and CaCl2 stresses.  Bioprocess. Biosyst. Eng. Chlamydomonas reinhardtii NIES-2235
Muhetaer, G., Asaeda, T., Jayasanka, S. M. D. H., Baniya, M. B., Abeynayaka, H. D. L., Rashid, M. H., Yan, H. Y.  2020  Effects of light intensity and exposure period on the growth and stress responses of two cyanobacteria species: Pseudanabaena galeata and Microcystis aeruginosa.  Water, 12, 407 (article ID). Microcystis aeruginosa NIES-111,
Pseudanabaena foetida var. intermedia NIES-512
Zhu, J., Wakisaka, M.  2020  Effect of two lignocellulose related sugar alcohols on the growth andmetabolites biosynthesis of Euglena gracilis.  Bioresour. Technol., 303, 122950 (article ID). Euglena gracilis NIES-48
Shen, X-F., Gao, L-J., Zhou, S-B., Huang, J-L., Wu, C-Z., Qin, Q-W., Zeng, R. J.  2020  High fatty acid productivity from Scenedesmus obliquus in heterotrophic cultivation with glucose and soybean processing wastewater via nitrogen and phosphorus regulation.  Sci. Total Environ., 708, 134596 (article ID). Tetradesmus obliquus NIES-2280
Yoshitomi, T., Kaminaga, S., Sato, N., Toyoshima, M., Moriyama, T., Yoshimoto, K.  2020  Formation of spherical palmelloid colony with enhanced lipid accumulation by gel encapsulation of Chlamydomonas debaryana NIES-2212.  Plant Cell Physiol., 61, 158–168. Chlamydomonas debaryana NIES-2212
Liang, Z., Geng, Y., Ji, C., Du, H., Wong, C. E., Zhang, Q., Zhang, Y., Zhang, P., Riaz, A., Chachar, S., Ding, Y., Wen, J., Wu, Y., Wang, M., Zheng, H., Wu, Y., Demko, V., Shen, L., Han, X., Zhang, P., Gu, X., Yu, H.  2020  Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta.  Adv. Sci., 7, 1901850 (article ID). Mesostigma viride NIES-296
Yamada, E., Sasai, K., Higa, R., Mizuguchi, H., Fuse Y.  2020  Characterization and dynamic analysis of dissolved proteins in Lake Biwa using two-dimensional electrophoresis.  Anal. Sci. Cryptomonas ovata NIES-275,
Fragilaria capucina NIES-391,
Microcystis aeruginosa NIES-109,
more
Natsuike, M., Endo, Y., Ito, H., Miyamoto, M., Yoshimura, C., Fujii, M.  2020  Iron uptake kinetics by coastal micro- and macro-algae in relation to riverine and coastal organic matter.  Estuar. Coast. Shelf Sci., 235, 106580 (article ID). Skeletonema marinoi-dohrnii complex NIES-323
Spoof, L., Jaakkola, S., Važić, T., Häggqvist, K., Kirkkala, T., Ventelä, A. M., Kirkkala, T., Svirčev, Z., Meriluoto, J.  2020  Elimination of cyanobacteria and microcystins in irrigation water—effects of hydrogen peroxide treatment.  Environ. Sci. Pollut. Res. Microcystis aeruginosa NIES-107
Tokodi, N., Drobac Backović, D., Lujić, J., Šćekić, I., Simić, S., Dordević, N., Dulić, T., Miljanović, N., Marinović, Z., Savela, H., Meriluoto, J., Svirčev, Z.  2020  Protected freshwater ecosystem with incessant cyanobacterial blooming awaiting a resolution.  Water, 12, 129 (article ID). Microcystis aeruginosa NIES-107
MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G.  2020  Origin and evolution of carboxysome positioning systems in cyanobacteria.  Mol. Biol. Evol. Anabaenopsis circularis NIES-21,
Arthrospira platensis NIES-39,
Calothrix brevissima NIES-22,
more
Hoshina, R., Hayakawa, M. M., Kobayashi, M., Higuchi, R., Suzaki, T.  2020  Pediludiella daitoensis gen. et sp. nov. (Scenedesmaceae, Chlorophyceae), a large coccoid green alga isolated from a Loxodes ciliate.  Sci Rep, 10, 628 (article ID). Pediludiella daitoensis NIES-4031
Praveenkumar, R., Lee, J., Vijaya, D., Lee, S. Y., Lee, K., Sim, S. J., Hong, M. E., Kim, Y.-E., Oh, Y.-K.  2020  Morphological change and cell disruption of Haematococcus pluvialis cyst during high-pressure homogenization for astaxanthin recovery.  Appl. Sci.-Basel, 10, 513 (article ID). Haematococcus lacustris NIES-144
Zhu, J. & Wakisaka, M.  2020  Finding of phytase: Understanding growth promotion mechanism of phytic acid to freshwater microalga Euglena gracilis.  Bioresour. Technol., 296, 122343 (article ID). Euglena gracilis NIES-48
Mikami, H., Kawaguchi, M., Huang, C.-J., Matsumura, H., Sugimura, T., Huang, K., Lei, C., Ueno, S., Miura, T., Ito, T., Nagasawa, K., Maeno, T., Watari, H., Yamagishi, M., Uemura, S., Ohnuki, S., Ohya, Y., Kurokawa, H., Matsusaka, S., Sun, C.-W., Ozeki, Y., Goda, K.  2020  Virtual-freezing fluorescence imaging flow cytometry.  bioRXiv Euglena gracilis NIES-48

2. Reference list published in 2019

Refarence Strain (s)
Toyama, T., Hanaoka, T., Yamada, K., Suzuki, K., Tanaka, Y., Morikawa, M., Mori, K.  2019  Enhanced production of biomass and lipids by Euglena gracilis via co-culturing with a microalga growth-promoting bacterium, Emticicia sp. EG3.  Biotechnol. Biofuels, 12, 205. NIES-48 Euglena gracilis
Zhu, J., Wakisaka, M.  2019  Effect of air nanobubble water on the growth and metabolism of Haematococcus lacustris and Botryococcus braunii.  J. Nutr. Sci. Vitaminol., 65, S212-S216. NIES-144 Haematococcus lacustris,
NIES-2199 Botryococcus braunii
Hiki, K., Tsuchikawa, M., Nakajima, F., Tobino, T.  2019  Identification of antioxidant genes in the ostracod Heterocypris incongruens through de novo transcriptome sequencing.  J. JSCE, 7, 133-142. NIES-94 Scenedesmus acutus
Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z.  2019  The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš.  Toxins, 11, 725 (article ID). NIES-107 Microcystis aeruginosa
Liu, J., Yang, C., Chi, Y., Wu, D., Dai, X., Zhang, X., Igarashi, Y., Luo, F.  2019  Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake.  J. Basic Microbiol., 59, 1112-1124. NIES-843 Microcystis aeruginosa
Umetsu, S., Kanda, M., Imai, I., Sakai, R., Fujita, M. J.  2019  Questiomycins, algicidal compounds produced by the marine bacterium Alteromonas sp. D and their production cue.  Molecules, 24, 4522 (article ID). NIES-1 Chattonella marina var. antiqua
Ikehara, T., Kuniyoshi, K., Yamaguchi, H., Tanabe, Y., Sano, T., Yoshimoto, M., Oshiro, N., Nakashima, S., Yasumoto-Hirose, M.  2019  First report of Microcystis strains producing MC-FR and -WR toxins in Japan.  Toxins, 11, 521 (article ID). NIES-4344, NIES-4345 Microcystis aeruginosa
Antoshvili, M. Caspy, I., Hippler, M., Nelson, N.  2019  Structure and function of photosystem I in Cyanidioschyzon merolae.  Photosynth Res., 139, 499-508. NIES-1804 Cyanidioschyzon merolae
Beneragama, C. K., Chamara, R. M. S. R., Kumara, G. D. K., Goto, K.  2019  Intraspecific plasticity in circadian rhythms within Euglena gracilis strain Z.  Int. J. Appi. Sci. Biotechnol., 7, 207-216. NIES-48 Euglena gracilis
Benico, G., Takahashi, K., Lum, W. M., Iwataki, M.  2019  Morphological variation, ultrastructure, pigment composition and phylogeny of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae, Dinophyceae).  Phycologia, 58, 405-418. NIES-4329 Asterodinium gracile
Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souzade, C., Pinto, E., Hansen, P. J., Larsen, T. O., Varga, E.  2019  A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum.  Harmful Algae, 81, 10-17. NIES-1017 , NIES-1018 , NIES-1812 Prymnesium parvum
Brito, M. L. M., Han, W. Q., Li, G. Q.  2019  Effects of diurnal fluctuation of temperature on growth, photosynthetic activity response of two morphotypes cells of Emiliania huxleyi.  Indian J. Mar. Sci., 48, 349-356. NIES-1318 Gephyrocapsa oceanica
Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P., Johansen, J. R.  2019  Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique Nostocalean (Cyanobacteria) genus based on a polyphasic approach.  J. Phycol., , NIES-592 Fischerella major,
NIES-3754, NIES-4106 Fischerella sp.
Chin, Y.-Y., Chu, W.-L., Kok, Y.-Y., Phang, S.-M., Wong, C.-Y., Tan, B.-K., Mustafa, E. M.  2019  Sensitivity of selected tropical microalgae isolated from a farmland and a eutrophic lake to atrazine and endosulfan.  J. Appl. Phycol. NIES-35 Raphidocelis subcapitata
Choi, H. I., Lee, J. S., Choi, J. W., Shin, Y. S., Sung, Y. J., Hong, M. E., Kwak, H. S., Kim, C. Y., Sim, S. J.  2019  Performance and potential appraisal of various microalgae as direct combustion fuel.  Bioresour. Technol., 273, 341-349. NIES-144 Haematococcus lacustris
Cunningham, B. R., Greenwold, M. J., Lachenmyer, E. M., Heidenreich, K, M., Davis, A. C., Dudycha, J. L., Richardson, T. L.  2019  Light capture and pigment diversity in marine and freshwater cryptophytes.  J. Phycol. NIES-697 Cryptomonas acuta,
NIES-698 Cryptomonas irregularis,
NIES-701 Rhodomonas chrysoidea,
more
Davison, J. R. & Bewley, C. A.  2019  Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii.  J. Nat. Prod., 82, 148-153. NIES-1699 Chrysophaeum taylorii
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A.  2019  Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon.  <Algal Res., 40, 101492. NIES-562 Chrysochromulina parva
Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R.  2019  Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes.  Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923. NIES-1846 Spumella sp.
Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S.  2019  Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae.  Plant Direct, 3, e00134 (article ID). NIES-3377 Cyanidioschyzon merolae
Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L.  2019  Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae.  Proc. R. Soc. B-Biol. Sci., 286, 20190655 (article ID). NIES-698 Cryptomonas irregularis,
NIES-702 Rhodomonas falcata
Hamamoto, Y. & Honda, D.  2019  Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem.  PLoS One, 14, e0208941 (article ID). NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-3712 Chaetoceros setoensis
Han, J.-I., Yao, J., Lee, C., Park, J., Choi, Y.-E.  2019  A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform.  Algal Res., 39, 101464. NIES-144 Haematococcus lacustris
Hano, T. & Tomaru, Y.  2019  Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus.  J. Chromatogr. B, 1128 NIES-3715 Chaetoceros tenuissimus
Higuchi, S., Sugahara, F., Pascual-Anaya, J., Takagi, W., Oisi, Y., Kuratani, S.  2019  Inner ear development in cyclostomes and evolution of the vertebrate semicircular canals.  Nature, 565, 347–350. NIES-3374 Chlorogonium capillatum
Hiramatsu, K., Ideguchi, T., Yonamine, Y., Lee, S. W., Luo, Y., Hashimoto, K., Ito, T., Hase, M., Park, J.-W., Kasai, Y., Sakuma, S., Hayakawa, T., Arai, F., Hoshino, Y., Goda, K.  2019  High-throughput label-free molecular fingerprinting flow cytometry.  Sci. Adv., 5, eaau0241 (article ID). NIES-48 Euglena gracilis,
NIES-144 Haematococcus lacustris
Hovde, B. T., Deodato, C. R., Andersen, R. A., Starkenburg, S. R., Barlow, S.B., Cattolico, R.A.  2019  Chrysochromulina: Genomic assessment and taxonomic diagnosis of the type species for an oleaginous algal clade.  Algal Res., 37, 307-319. NIES-562 Chrysochromulina parva
Hwang, S. W., Choi, H. I., Sim, S. J.  2019  Acidic cultivation of Haematococcus pluvialis for improved astaxanthin production in the presence of a lethal fungus.  Bioresour. Technol., 278, 138-144. NIES-144 Haematococcus lacustris
Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I.  2019  Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study.  Harmful Algae, 84, 139-150. NIES-1 Chattonella marina var. antiqua
Irshad, M., Myint, A. A., Hong, M. E., Kim, J., Sim, S. J.  2019  One-pot, simultaneous cell wall disruption and complete extraction of astaxanthin from Haematococcus pluvialis at room temperature.  ACS Sustain. Chem. Eng., 7, 13898-13910. NIES-144 Haematococcus lacustris
Iwai, S., Fujita, K., Takanishi, Y., Fukushi, K.  2019  Photosynthetic endosymbionts benefit from host’s phagotrophy, including predation on potential competitors.  Curr. Biol., 29, 3114-3119. NIES-227 Chlorella vulgaris var. vulgaris
Jiang, J. & Lu, Y.  2019  Metabolite profiling of Breviolum minutum in response to acidification.  Aquat. Toxicol., 213, 105215 (article ID). NIES-3808 Breviolum minutum
Jin, P., Liu, N., Gao, K.  2019  Physiological responses of a coccolithophore to multiple environmental drivers.  Mar. Pollut. Bull., 146, 225-235. NIES-1318 Gephyrocapsa oceanica
Kania, K., Zienkiewicz, M., Drożak, A.  2019  Stable transformation of unicellular green alga Coccomyxa subellipsoidea C-169 via electroporation.  Protoplasma NIES-2166 Coccomyxa subellipsoidea
Kashem, MA., Kimoto, K., Iribe, Y., Suzuki, M.  2019  Development of microalgae biosensor chip by incorporating microarray oxygen sensor for pesticides sensing.  Biosensors, 9, 133 (article ID). NIES-35 Raphidocelis subcapitata
Keshari, N., Gugger, M., Zhu, T., Lu, X.  2019  Compatible solutes profiling and carbohydrate feedstock from diversified cyanobacteria.  Algal Res., 43, 101637 (article ID). NIES-31 Oscillatoria laetevirens,
NIES-592 Fischerella major,
NIES-1031 Chroogloeocystis siderophila
Kim, M., Shin, B., Lee, J., Park, H. Y., Park, W.  2019  Culture-independent and culture-dependent analyses of the bacterial community in the phycosphere of cyanobloom-forming Microcystis aeruginosa.  Sci Rep, 9, 20416 (article ID). NIES-298 Microcystis aeruginosa
Kimura, S., Yamada, T., Ban, S., Koyama, M., Toda, T.  2019  Nutrient removal from anaerobic digestion effluents of aquatic macrophytes with the green alga, Chlorella sorokiniana.  Biochem. Eng. J., 142, 170-177. NIES-2173 Chlorella sorokiniana
Kuang, X., Peng, L., Chen, A., Xeng, Q., Luo, S., Shao, J.  2019  Enhancement mechanisms of copper(II) adsorption onto kaolinite by extracellular polymeric substances of Microcystis aeruginosa (cyanobacterium).  Int. Biodeterior. Biodegrad., 138, 8-14. NIES-843 Microcystis aeruginosa
Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E.  2019  Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage.  Algal Res., 41, 101547. NIES-144 Haematococcus lacustris
Lee, S., Thio, S. K., Park, S.-Y., Bae, S.  2019  An automated 3D-printed smartphone platform integrated withoptoelectrowetting (OEW) microfluidic chip for on-site monitoring of viablealgae in water.  Harmful Algae, 88 NIES-843 Microcystis aeruginosa,
NIES-2463 Chlamydomonas reinhardtii
Lin, Y., Ge, J., Zhang, Y., Ling, H., Yan, X., Ping, W.  2019  Monoraphidium sp. HDMA-20 is a new potential source of α-linolenic acid and eicosatetraenoic acid.  Lipids Health Dis., 18, 56 (article ID). NIES-244 Coelastrum astroideum
Liu, Z., Hou, Y., He, C., Wang, X., Chen, S., Huang, Z., Chen, F.  2019  Enhancement of linoleic acid content stimulates astaxanthin esterification in Coelastrum sp.  Bioresour. Technol. NIES-144 Haematococcus lacustris
Lu, Z., Zheng, L., Liu, J., Dai, J., Song, L.  2019  A novel fed-batch strategy to boost cyst cells production based on the understanding of intracellular carbon and nitrogen metabolism in Haematococcus pluvialis.  Bioresour Technol., 289, 121744 (article ID). NIES-144 Haematococcus lacustris
Makino, T., Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Nozaki, H.  2019  Taxonomic re-examination of two NIES strains of“Chlamydomonas” within the Reticulata group of the genus Chloromonas (Volvocales, Chlorophyceae).  Microb. Resour. Syst., 35, 13-23 NIES-2215 Chloromonas difformis,
NIES-2243 Chloromonas typhlos
Mathiot, C., Ponge, P., Gallard, B., Sassi, J.-F., Delrue, F., Le Moigne, N.  2019  Microalgae starch-based bioplastics: screening of ten strains and plasticization of unfractionated microalgae by extrusion.  Carbohydr. Polym., 208, 142-151. NIES-94 Scenedesmus acutus,
NIES-227 Chlorella vulgaris var. vulgaris,
NIES-2152 Parachlorella kessleri,
more
Matsuzaki, R., Nozaki, H., Takeuchi, N., Hara, Y., Kawachi, M.  2019  Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov.  PLoS One, 14, e0210986 (article ID). NIES-464 Gloeomonas lateperforata,
NIES-2379, NIES-2380 Chloromonas miwae,
more
Misaki, K., Morita, Y., Kobayashi, K., Sugawara, Y., Shimizu, Y., Kusakabe, T.  2019  Evaluation of algal photosynthesis inhibition activity for dissolved organic matter with the consideration of inorganic and coloring constituents.  Chemosphere, 224, 333-342. NIES-2170 Chlorella vulgaris,
NIES-2219 Chlamydomonas moewusii
Morsy, F. M., Elbadry, M., El-Sayed, W. S., Abd El-Hady, D.  2019  Dark and photofermentation H2 production from hydrolyzed biomass of the potent extracellular polysaccharides producing cyanobacterium Nostoc commune and intracellular polysaccharide (glycogen) enriched Anabaena variabilis NIES-2095.  Int. J. Hydrog. Energy, 44, 16199-16211. NIES-2095 Anabaena variabilis
Nagai, M., Hirano, T., Shibata, T.  2019  Phototactic algae-driven unidirectional transport of submillimeter-sized cargo in a microchannel.  Micromachines, 10, 130 (article ID). NIES-865 Volvox carteri f. nagariensis
Nakada, T., Tsuchida, Y., Tomita, M.  2019  Improved taxon sampling and multigene phylogeny of unicellular chlamydomonads closely related to the colonial volvocalean lineage Tetrabaenaceae-Goniaceae-Volvocaceae (Volvocales, Chlorophyceae).  Mol. Phylogenet. Evol., 130, 1-8. NIES-418 Astrephomene gubernaculifera,
NIES-437 Chlamydomonas fasciata,
NIES-456 Eudorina elegans,
more
Nobusawa, T., Yamakawa-Ayukawa, K., Saito, F., Nomura, S., Takami, A., Ohta, H.  2019  A homolog of Arabidopsis SDP1 lipase in Nannochloropsis is involved in degradation of de novo-synthesized triacylglycerols in the endoplasmic reticulum.  Biochim. Biophys. Acta Mol. Cell Biol. Lipids, 1864, 1185-1193. NIES-2145 Nannochloropsis oceanica
Nomura, M., Atsuji, K., Hirose, K., Shiba, K., Yanase, R., Nakayama, T., Ishida, K-I., Inaba, K.  2019  Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae.  Biol. Open, 8, bio036590 (article ID). NIES-4122 Chrysochromulina sp.
Nomura, T., Inoue, K., Uehara-Yamaguchi, Y., Yamada, K., Iwata, O., Suzuki, K., Mochida, K.  2019  Highly efficient transgene‐free targeted mutagenesis and single‐stranded oligodeoxynucleotide‐mediated precise knock‐in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins.  Plant Biotechnol. J. NIES-48 Euglena gracilis
Nozaki, H., Takusagawa, M., Matsuzaki, R., Misumi, O., Mahakham, W., Kawachi, M.  2019  Morphology, reproduction and taxonomy of Volvox dissipatrix (Chlorophyceae) from Thailand, with a description of Volvox zeikusii sp. nov.  Phycologia, 58, 192-199. NIES-731 Volvox zeikusii,
NIES-4128 Volvox dissipatrix
Ohmura, Y., Takeshita, S., Kawachi, M.  2019  Photobiont diversity within populations of a vegetatively reproducing lichen, Parmotrema tinctorum, can be generated by photobiont switching.  Symbiosis NIES-1446, NIES-1447, NIES-1448, NIES-1449, NIES-1450, NIES-1451, NIES-1452, NIES-1453, NIES-1454, NIES-1455 Trebouxia corticola
Okamoto, Y., Haraguchi, Y., Sawamura, N., Asahi, T., Shimizu, T.  2019  Mammalian cell cultivation using nutrients extracted from microalgae.  Biotechnol. Prog. NIES-27 Spirulina subsalsa,
NIES-39 Arthrospira platensis,
NIES-49 Euglena gracilis,
more
Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J.  2019  A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta).  Am. J. Bot., 106, 560-572. NIES-3851 Nitzschia sp.
Ota, S., Oshima, K., Yamazaki, T., Takeshita, T., Bišová, K., Zachleder, V., Hattori, M., Kawano, S.  2019  The Parachlorella genome and transcriptome endorse active RWP-RK, meiosis and flagellar genes in trebouxiophycean algae.  Cytologia, 84, 323-330. NIES-2152 Parachlorella kessleri
Ota, S., Yamaguchi, H., Vanel, F., Fuchida, S., Koshikawa, H., Yamagishi, T., Yamamoto, H., Kawachi, M.  2019  Differential heavy metal sensitivity in seven algal species from the NIES culture collection based on delayed fluorescence assays.  Phycol. Res. NIES-981 Cyanobium sp.,
NIES-1310 Emiliania huxleyi,
NIES-2670 Bathycoccus prasinos
Otaki, R., Oishi, Y., Abe, S., Fujiwara, S., Sato, N.  2019  Regulatory carbon metabolism underlying seawater-based promotion of triacylglycerol accumulation in Chlorella kessleri.  Bioresour. Technol., 289, 121686 (article ID). NIES-2152 Parachlorella kessleri
Oliveira, E. D. C. de, Cunha, A. C. da, Silva, N. B. da, Castelo-Branco, R., Morais, J., Schneider, M. P. C., Faustino, S. M. M., Ramos, V., Vasconcelos, V.  2019  Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River.  Phytotaxa, 387, 269-288. NIES-504 Leptolyngbya sp.,
NIES-512 Pseudanabaena foetida var. intermedia
Park, B. S., Kim, S., Kim. J.-H., Kim, J. H., Han, M.-S.  2019  Dynamics of Amoebophrya parasites during recurrent blooms of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters.  Harmful Algae, 84, 119-126. NIES-298 Microcystis aeruginosa
Qin, L., Wei, D., Wang, Z., Alam, M. A.  2019  Advantage assessment of mixed culture of Chlorella vulgaris and Yarrowia lipolytica for treatment of liquid digestate of yeast industry and cogeneration of biofuel feedstock.  J. Appl. Phycol., 187, 856–869. NIES-227 Chlorella vulgaris
Religia, P., Kato, Y., Fukushima, E. O., Matsuura, T., Muranaka, T., Watanabe, H.  2019  Atrazine exposed phytoplankton causes the production of non-viable 2 offspring on Daphnia magna.  Mar. Environ. Res., 145, 177-183. NIES-35 Raphidocelis subcapitata
Shen, X.-F., Qin, Q.-W., Yan, S.-K., Huang, J.-L., Liu, K., Zhou, S.-B.  2019  Biodiesel production from Chlorella vulgaris under nitrogen starvation in autotrophic, heterotrophic, and mixotrophic cultures.  J. Appl. Phycol. NIES-227 Chlorella vulgaris var. vulgaris
Shi, Y., Liu, Y., Zhang, J., Gao, B.  2019  Regulation of five-antibiotic mixture on Microcystis aeruginosa exposed to sublethal doses of ultraviolet radiation.  Int. J. Environ. Sci. Technol. NIES-843 Microcystis aeruginosa
Shiratori, T., Suzuki, S., Kakizawa, Y., Ishida, K-I.  2019  Phagocytosis-like cell engulfment by a planctomycete bacterium.  Nat. Commun., 10, 5529 (article ID). NIES-2670 Bathycoccus prasinos
Sugihara, S., Ozaki, T., Tojo, T., Endo, H., Saito, T., Takimura, Y.  2019  Identification of novel 3-ketoacyl-acyl carrier protein synthase involved in producing medium chain fatty acids from microalgae.  Bioresour. Technol. Reports NIES-2145 Nannochloropsis oceanica
Suzuki, S., Yamaguchi, H., Kawachi, M.  2019  Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949.  Microbiol Resour Announc., e00605-19 (article ID). NIES-80 Dolichospermum planctonicum,
NIES-905 Planktothrix agardhii,
NIES-1949 Sphaerospermopsis reniformis
Suzuki, S., Yamaguchi, H., Kawachi, M.  2019  The draft genome of a hydrogen-producing cyanobacterium, Arthrospira platensis NIES-46.  J. Genomics, 7, 56-59. NIES-46 Arthrospira platensis
Takaara, T., Sasaki, S., Fujii, M., Ito, H., Masago, Y., Omura, T.  2019  Lectin-stimulated cellular iron uptake and toxin generation in the freshwater cyanobacterium Microcystis aeruginosa.  Harmful Algae, 83, 25-33. NIES-478 Microcystis aeruginosa
Takahashi, K., Benico, G., Lum, W. M., Iwataki, M.  2019  Gertia stigmatica gen. et sp. nov. (Kareniaceae, Dinophyceae), a new marine unarmored dinoflagellate possessing the peridinin-type chloroplast with an eyespot.  Protist, 170, 125680 (article ID). NIES-4330 Gertia stigmatica
Tamamizu, K., Kumazaki, S.  2019  Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation.  Biochim. Biophys. Acta-Bioenerg., 1860, 78-88. NIES-2095 Anabaena variabilis,
NIES-2160 Parachlorella kessleri
Tanabe, Y. & Yamaguchi, H.  2019  Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan).  Microbiol Resour Announc., 8, e00001-19 (article ID). NIES-4285 Microcystis aeruginosa
Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M.  2019  A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa.  <FEMS Mircobiol. Lett., 366, fnz190 (article ID). NIES-4325 Microcystis aeruginosa
Tokunaga, S., Sanda, S., Uraguchi, Y., Nakagawa, S., Sawayama, S.  2019  Overexpression of the DOF-type transcription factor enhances lipid synthesis in Chlorella vulgaris.  Appl. Biochem. Biotechnol. NIES-2170 Chlorella vulgaris
Tomita, Y., Takeya, M., Suzuki, K., Nitta, N., Higuchi, C., Marukawa-Hashimoto, Y., Osanai, T.  2019  Amino acid excretion from Euglena gracilis cells in dark and anaerobic conditions.  Algal Res., 37, 169-177. NIES-48 Euglena gracilis
Tsuchikane, Y., & Sekimoto, H.  2019 The genus Closterium, a new model organism to study sexual reproduction in streptophytes.  New Phytol., 221, 99-104. NIES-67, NIES-69 Closterium peracerosum-strigosum-littorale complex
Tsuzuki, M., Okada, K., Isoda, H., Hirano, M., Odaka, T., Saijo, H., Aruga, R., Miyauchi, H., Fujiwara, S.  2019  Physiological properties of photoautotrophic microalgae and cyanobacteria relevant to industrial biomass production.  Mar. Biotechnol., 21, 406-415. NIES-2160 Parachlorella kessleri
Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C.  2019  Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code.  Genome Biol. Evol., 11, 1275–1292. NIES-2755 Chloropicon roscoffensis,
NIES-2758 Chloroparvula japonica,
NIES-3669 Chloroparvula pacifica,
more
Urrejola, C., Alcorta, J., Salas, L., Vásquez, M., Polz, M. F., Vicuña, R., Díez, B.  2019  Genomic features for desiccation yolerance and sugar biosynthesis in the extremophile Gloeocapsopsis sp. UTEX B3054.  Front. Microbiol., 10, 950 (article ID). NIES-1031 Chroogloeocystis siderophila
Wagstaff, B. A., Rejzek, M., Kuhaudomlarp, S., Hill, L., Mascia, I., Nepogodiev, S. A., Dorfmueller, H. C., Field, R. A.  2019  Discovery of an RmlC/D fusion protein in the microalga Prymnesium parvum and its implications for NDP-β-L-rhamnose biosynthesis in microalgae.  J. Biol. Chem., 294, 9172-9185. NIES-381 Eutreptiella gymnastica
Wan, M., Zhang, Z., Wang, R., Bai, W., Huang, J., Wang, W., Shen, G., Yu, A., Li, Y.  2019  High-yield cultivation of Botryococcus braunii for biomass and hydrocarbons.  Biomass Bioenerg., 131, 105399 (article ID). NIES-836 Botryococcus braunii
Wang, Z., Gui, H., Luo, Z., Zhen, Z., Yan, C., Xing, B.  2019  Dissolved organic phosphorus enhances arsenate bioaccumulation and biotransformation in Microcystis aeruginosa.  Environ Pollut., 252, 1755-1763. NIES-843 Microcystis aeruginosa
Wei, K., Jung, S., Amano, Y., Machida, M.  2019  Control of the buoyancy of Microcystis aeruginosa via colony formation induced by regulating extracellular polysaccharides and cationic ions.  SN Applied Sciences, 1, 1573 (article ID). NIES-843 Microcystis aeruginosa
Widyaningrum, D., Iida, D., Tanabe, Y., Hayashi, Y., Kurniasih, S. D., Ohama, T.  2019  Acutely induced cell mortality in the unicellular green alga Chlamydomonas reinhardtii (Chlorophyceae) following exposure to acrylic resin nanoparticles.  J. Phycol., 55, 118-133. NIES-35 Raphidocelis subcapitata,
NIES-144 Haematococcus lacustris,
NIES-362 Pandorina morum,
more
Yalikun, Y., Ota, N., Guo, B., Tang, T., Zhou, Y., Lei, C., Kobayashi, H., Hosokawa, Y., Li, M., Enrique Muñoz, H., Di Carlo, D., Goda, K., Tanaka Y.  2019  Effects of flow-induced microfluidic chip wall deformation on imaging flow cytometry.  Cytom. Part A NIES-48 Euglena gracilis
Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S.  2019  Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles).  J. Phycol., 55, 196-203. NIES-2565 Triparma laevis f. inornata
Yamashita, S. & Nozaki, H.  2019  Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae.  BMC Evol. Biol., 19, 120 (article ID). NIES-571 Tetrabaena socialis var. socialis
Yokono, M., Takabayashi, A., Kishimoto, J., Fujita, T., Iwai, M., Murakami, A., Akimoto, S., Tanaka, A.  2019  The PSI-PSII megacomplex in green plants.  Plant Cell Physiol., 60, 1098–1108. NIES-144 Haematococcus lacustris,
NIES-296 Mesostigma viride,
NIES-303 Penium margaritaceum,
more
Yoshitomi, T., Shimada, N., Iijima, K., Hashizume, M., Yoshimoto, K.  2019  Polyethyleneimine-induced astaxanthin accumulation in the green alga Haematococcus pluvialis by increased oxidative stress.  J. Biosci. Bioeng. NIES-144 Haematococcus lacustris
Yu, Y., Zeng, Y., Li, J., Yang, C., Zhang, X., Luo, F., Dai, X.  2019  An algicidal Streptomyces amritsarensis strain against Microcystis aeruginosa strongly inhibits microcystin synthesis simultaneously.  Sci. Total Environ., 650, 34-43. NIES-44 , NIES-90 , NIES-843 Microcystis aeruginosa
Zhang, H., Meng, G., Mao, F., Li, W., He, Y., Gin, K. Y.-H., Ong, C. N.  2019  Use of an integrated metabolomics platform for mechanistic investigations of three commonly used algaecides on cyanobacterium, Microcystis aeruginosa.  J. Hazard. Mater., 367, 120-127. NIES-843 Microcystis aeruginosa
Zhang, Z., Qu, C., Yao, R., Nie, Y., Xu, C., Miao, J., Zhong, B.  2019  The parallel molecular adaptations to the Antarctic cold environment in two psychrophilic green algae.  Genome Biol. Evol., 11, 1897-1908. NIES-691 Tetrabaena socialis
Zhou, L., Chen, G., Cui, N., Pan, Q., Song, X., Zou, G.  2019  Allelopathic effects on Microcystis aeruginosa and allelochemical identification in the cuture solutions of typical artificial floating-bed plants.  Bull. Environ. Contam. Toxicol., 102, 115–121. NIES-44 Microcystis aeruginosa
Zhu, J., Hong, D. D., Wakisaka, M.  2019  Phytic acid extracted from rice bran as a growth promoter for Euglena gracilis.  Open Chem., 17, 57-63. NIES-48 Euglena gracilis
Zhu, S., Feng, S., Xu, Z., Qin, L., Shang, C., Feng, P., Wang, Z., Yuan, Z.  2019  Cultivation of Chlorella vulgaris on unsterilized dairy-derived liquid digestate for simultaneous biofuels feedstock production and pollutant removal.  Bioresour. Technol., 285, 121353 (article ID). NIES-227 Chlorella vulgaris var. vulgaris
Zhu, S., Qin, L., Feng, P., Shang, C., Wang, Z., Yuan, Z.  2019  Treatment of low C/N ratio wastewater and biomass production using co-culture of Chlorella vulgaris and activated sludge in a batch photobioreactor.  Bioresour. Technol., 274, 313-320. NIES-227 Chlorella vulgaris var. vulgaris
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