1. Reference list published in 2019

Benico, G., Takahashi, K., Lum, W. M., Iwataki, M.  2019  Morphological variation, ultrastructure, pigment composition and phylogeny of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae, Dinophyceae).  Phycologia, 58, 405-418. NIES-4329 Asterodinium gracile
Takahashi, K., Benico, G., Lum, W. M., Iwataki, M.  2019  Gertia stigmatica gen. et sp. nov. (Kareniaceae, Dinophyceae), a new marine unarmored dinoflagellate possessing the peridinin-type chloroplast with an eyespot.  Protist, 170, 125680 (article ID). NIES-4330 Gertia stigmatica
Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M.  2019  A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa.  <FEMS Mircobiol. Lett., 366, fnz190 (article ID). NIES-4325 Microcystis aeruginosa
Iwai, S., Fujita, K., Takanishi, Y., Fukushi, K.  2019  Photosynthetic endosymbionts benefit from host’s phagotrophy, including predation on potential competitors.  , 29, 3114-3119. NIES-227 Chlorella vulgaris
Keshari, N., Gugger, M., Zhu, T., Lu, X.  2019  Compatible solutes profiling and carbohydrate feedstock from diversified cyanobacteria.  Algal Res., 43, 101637 (article ID). NIES-31 Oscillatoria laetevirens,
NIES-592 Fischerella major,
NIES-1031 Chroogloeocystis siderophila
Ota, S., Yamaguchi, H., Vanel, F., Fuchida, S., Koshikawa, H., Yamagishi, T., Yamamoto, H., Kawachi, M.  2019  Differential heavy metal sensitivity in seven algal species from the NIES culture collection based on delayed fluorescence assays.  Phycol. Res. NIES-981 Cyanobium sp.,
NIES-1310 Emiliania huxleyi,
NIES-2670 Bathycoccus prasinos
Hano, T. & Tomaru, Y.  2019  Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus.  J. Chromatogr. B, 1128 NIES-3715 Chaetoceros tenuissimus
Wang, Z., Gui, H., Luo, Z., Zhen, Z., Yan, C., Xing, B.  2019  Dissolved organic phosphorus enhances arsenate bioaccumulation and biotransformation in Microcystis aeruginosa.  Environ Pollut., 252, 1755-1763. NIES-843 Microcystis aeruginosa
Lee, S., Thio, S. K., Park, S.-Y., Bae, S.  2019  An automated 3D-printed smartphone platform integrated withoptoelectrowetting (OEW) microfluidic chip for on-site monitoring of viablealgae in water.  Harmful Algae, 88 NIES-843 Microcystis aeruginosa,
NIES-2463 Chlamydomonas reinhardtii
Nomura, T., Inoue, K., Uehara-Yamaguchi, Y., Yamada, K., Iwata, O., Suzuki, K., Mochida, K.  2019  Highly efficient transgene‐free targeted mutagenesis and single‐stranded oligodeoxynucleotide‐mediated precise knock‐in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins.  Plant Biotechnol. J. NIES-48 Euglena gracilis
Qin, L., Wei, D., Wang, Z., Alam, M. A.  2019  Advantage assessment of mixed culture of Chlorella vulgaris and Yarrowia lipolytica for treatment of liquid digestate of yeast industry and cogeneration of biofuel feedstock.  J. Appl. Phycol., 187, 856–869. NIES-227 Chlorella vulgaris
Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L.  2019  Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae.  Proc. R. Soc. B-Biol. Sci., 286, 20190655 (article ID). NIES-698 Cryptomonas irregularis,
NIES-702 Rhodomonas falcata
Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C.  2019  Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code.  Genome Biol. Evol., 11, 1275–1292. NIES-2755 Chloropicon roscoffensis,
NIES-2758 Chloroparvula japonica,
NIES-3669 Chloroparvula pacifica,
Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S.  2019  Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles).  J. Phycol., 55, 196-203. NIES-2565 Triparma laevis f. inornata
Lu, Z., Zheng, L., Liu, J., Dai, J., Song, L.  2019  A novel fed-batch strategy to boost cyst cells production based on the understanding of intracellular carbon and nitrogen metabolism in Haematococcus pluvialis.  Bioresour Technol., 289, 121744 (article ID). NIES-144 Haematococcus lacustris
Beneragama, C. K., Chamara, R. M. S. R., Kumara, G. D. K., Goto, K.  2019  Intraspecific plasticity in circadian rhythms within Euglena gracilis strain Z.  Int. J. Appi. Sci. Biotechnol., 7, 207-216. NIES-48 Euglena gracilis
Morsy, F. M., Elbadry, M., El-Sayed, W. S., Abd El-Hady, D.  2019  Dark and photofermentation H2 production from hydrolyzed biomass of the potent extracellular polysaccharides producing cyanobacterium Nostoc commune and intracellular polysaccharide (glycogen) enriched Anabaena variabilis NIES-2095.  Int. J. Hydrog. Energy, 44, 16199-16211. NIES-2095 Anabaena variabilis
Otaki, R., Oishi, Y., Abe, S., Fujiwara, S., Sato, N.  2019  Regulatory carbon metabolism underlying seawater-based promotion of triacylglycerol accumulation in Chlorella kessleri.  Bioresour. Technol., 289, 121686 (article ID). NIES-2152 Parachlorella kessleri
Yamashita, S. & Nozaki, H.  2019  Embryogenesis of flattened colonies implies the innovation required for the evolution of spheroidal colonies in volvocine green algae.  BMC Evol. Biol., 19, 120 (article ID). NIES-571 Tetrabaena socialis var. socialis
Jin, P., Liu, N., Gao, K.  2019  Physiological responses of a coccolithophore to multiple environmental drivers.  Mar. Pollut. Bull., 146, 225-235. NIES-1318 Gephyrocapsa oceanica
Nobusawa, T., Yamakawa-Ayukawa, K., Saito, F., Nomura, S., Takami, A., Ohta, H.  2019  A homolog of Arabidopsis SDP1 lipase in Nannochloropsis is involved in degradation of de novo-synthesized triacylglycerols in the endoplasmic reticulum.  Biochim. Biophys. Acta Mol. Cell Biol. Lipids, 1864, 1185-1193. NIES-2145 Nannochloropsis oceanica
Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J.  2019  A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta).  Am. J. Bot., 106, 560-572. NIES-3851 Nitzschia sp.
Jiang, J. & Lu, Y.  2019  Metabolite profiling of Breviolum minutum in response to acidification.  Aquat. Toxicol., 213, 105215 (article ID). NIES-3808 Breviolum minutum
Zhu, S., Feng, S., Xu, Z., Qin, L., Shang, C., Feng, P., Wang, Z., Yuan, Z.  2019  Cultivation of Chlorella vulgaris on unsterilized dairy-derived liquid digestate for simultaneous biofuels feedstock production and pollutant removal.  Bioresour. Technol., 285, 121353 (article ID). NIES-227 Chlorella vulgaris var. vulgaris
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A.  2019  Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon.  Algal Res., 40, 101492. NIES-562 Chrysochromulina parva
Brito, M. L. M., Han, W. Q., Li, G. Q.  2019  Effects of diurnal fluctuation of temperature on growth, photosynthetic activity response of two morphotypes cells of Emiliania huxleyi.  Indian J. Mar. Sci., 48, 349-356. NIES-1318 Gephyrocapsa oceanica
Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S.  2019  Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae.  Plant Direct, 3, e00134 (article ID). NIES-3377 Cyanidioschyzon merolae
Yokono, M., Takabayashi, A., Kishimoto, J., Fujita, T., Iwai, M., Murakami, A., Akimoto, S., Tanaka, A.  2019  The PSI-PSII megacomplex in green plants.  Plant Cell Physiol., 60, 1098–1108. NIES-144 Haematococcus lacustris,
NIES-296 Mesostigma viride,
NIES-303 Penium margaritaceum,
Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I.  2019  Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study.  Harmful Algae, 84, 139-150. NIES-1 Chattonella marina var. antiqua
Tsuzuki, M., Okada, K., Isoda, H., Hirano, M., Odaka, T., Saijo, H., Aruga, R., Miyauchi, H., Fujiwara, S.  2019  Physiological properties of photoautotrophic microalgae and cyanobacteria relevant to industrial biomass production.  Mar. Biotechnol., 21, 406-415. NIES-2160 Parachlorella kessleri
Yoshitomi, T., Shimada, N., Iijima, K., Hashizume, M., Yoshimoto, K.  2019  Polyethyleneimine-induced astaxanthin accumulation in the green alga Haematococcus pluvialis by increased oxidative stress.  J. Biosci. Bioeng. NIES-144 Haematococcus lacustris
Widyaningrum, D., Iida, D., Tanabe, Y., Hayashi, Y., Kurniasih, S. D., Ohama, T.  2019  Acutely induced cell mortality in the unicellular green alga Chlamydomonas reinhardtii (Chlorophyceae) following exposure to acrylic resin nanoparticles.  J. Phycol., 55, 118-133. NIES-35 Raphidocelis subcapitata,
NIES-144 Haematococcus lacustris,
NIES-362 Pandorina morum,
Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E.  2019  Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage.  Algal Res., 41, 101547. NIES-144 Haematococcus lacustris
Park, B. S., Kim, S., Kim. J.-H., Kim, J. H., Han, M.-S.  2019  Dynamics of Amoebophrya parasites during recurrent blooms of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters.  Harmful Algae, 84, 119-126. NIES-298 Microcystis aeruginosa
Wagstaff, B. A., Rejzek, M., Kuhaudomlarp, S., Hill, L., Mascia, I., Nepogodiev, S. A., Dorfmueller, H. C., Field, R. A.  2019  Discovery of an RmlC/D fusion protein in the microalga Prymnesium parvum and its implications for NDP-β-L-rhamnose biosynthesis in microalgae.  J. Biol. Chem., 294, 9172-9185. NIES-381 Eutreptiella gymnastica
Urrejola, C., Alcorta, J., Salas, L., Vásquez, M., Polz, M. F., Vicuña, R., Díez, B.  2019  Genomic features for desiccation yolerance and sugar biosynthesis in the extremophile Gloeocapsopsis sp. UTEX B3054.  Front. Microbiol., 10, 950 (article ID). NIES-1031 Chroogloeocystis siderophila
Zhang, Z., Qu, C., Yao, R., Nie, Y., Xu, C., Miao, J., Zhong, B.  2019  The parallel molecular adaptations to the Antarctic cold environment in two psychrophilic green algae.  Genome Biol. Evol., 11, 1897-1908. NIES-691 Tetrabaena socialis
Zhu, S., Feng, S., Xu, Z., Qin, L., Shang, C., Feng, P., Wang, Z., Yuan, Z.  2019  Cultivation of Chlorella vulgaris on unsterilized dairy-derived liquid digestate for simultaneous biofuels feedstock production and pollutant removal.  Bioresour. Technol., 285, 121353 (article ID). NIES-227 Chlorella vulgaris var. vulgaris
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A.  2019  Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon.  <Algal Res., 40, 101492. NIES-562 Chrysochromulina parva
Brito, M. L. M., Han, W. Q., Li, G. Q.  2019  Effects of diurnal fluctuation of temperature on growth, photosynthetic activity response of two morphotypes cells of Emiliania huxleyi.  , 48, 349-356. NIES-1318 Gephyrocapsa oceanica
Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S.  2019  Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae.  Plant Direct, 3, e00134 (article ID). NIES-3377 Cyanidioschyzon merolae
Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I.  2019  Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study.  Harmful Algae, 84, 139-150. NIES-1 Chattonella marina var. antiqua
Tsuzuki, M., Okada, K., Isoda, H., Hirano, M., Odaka, T., Saijo, H., Aruga, R., Miyauchi, H., Fujiwara, S.  2019  Physiological properties of photoautotrophic microalgae and cyanobacteria relevant to industrial biomass production.  Mar. Biotechnol., 21, 406-415. NIES-2160 Microcystis aeruginosa
Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L.  2019  Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae.  Proc. R. Soc. B-Biol. Sci., 286 NIES-698 Cryptomonas irregularis,
NIES-702 Rhodomonas falcata
Zhang, Z., Qu, C., Yao, R., Nie, Y., Xu, C., Miao, J., Zhong, B.  2019  The parallel molecular adaptations to the Antarctic cold environment in two psychrophilic green algae.  Genome Biol. Evol. NIES-691 Tetrabaena socialis
Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E.  2019  Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage.  Algal Res., 41, 101547. NIES-144 Haematococcus lacustris
Misaki, K., Morita, Y., Kobayashi, K., Sugawara, Y., Shimizu, Y., Kusakabe, T.  2019  Evaluation of algal photosynthesis inhibition activity for dissolved organic matter with the consideration of inorganic and coloring constituents.  Chemosphere, 224, 333-342. NIES-2170 Chlorella vulgaris,
NIES-2219 Chlamydomonas moewusii
Nozaki, H., Takusagawa, M., Matsuzaki, R., Misumi, O., Mahakham, W., Kawachi, M.  2019  Morphology, reproduction and taxonomy of Volvox dissipatrix (Chlorophyceae) from Thailand, with a description of Volvox zeikusii sp. nov.  Phycologia, 58, 192-199. NIES-731 Volvox zeikusii,
NIES-4128 Volvox dissipatrix
Chin, Y.-Y., Chu, W.-L., Kok, Y.-Y., Phang, S.-M., Wong, C.-Y., Tan, B.-K., Mustafa, E. M.  2019  Sensitivity of selected tropical microalgae isolated from a farmland and a eutrophic lake to atrazine and endosulfan.  J. Appl. Phycol. NIES-35 Raphidocelis subcapitata
Sugihara, S., Ozaki, T., Tojo, T., Endo, H., Saito, T., Takimura, Y.  2019  Identification of novel 3-ketoacyl-acyl carrier protein synthase involved in producing medium chain fatty acids from microalgae.  Bioresour. Technol. Reports NIES-2145 Nannochloropsis oceanica
Zhu, J., Hong, D. D., Wakisaka, M.  2019  Phytic acid extracted from rice bran as a growth promoter for Euglena gracilis.  Open Chem., 17, 57-63. NIES-48 Euglena gracilis
Shi, Y., Liu, Y., Zhang, J., Gao, B.  2019  Regulation of five-antibiotic mixture on Microcystis aeruginosa exposed to sublethal doses of ultraviolet radiation.  Int. J. Environ. Sci. Technol. NIES-843 Microcystis aeruginosa
Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R.  2019  Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes.  Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923. NIES-1846 Spumella sp.
Tokunaga, S., Sanda, S., Uraguchi, Y., Nakagawa, S., Sawayama, S.  2019  Overexpression of the DOF-type transcription factor enhances lipid synthesis in Chlorella vulgaris.  Appl. Biochem. Biotechnol. NIES-2170 Chlorella vulgaris
Lin, Y., Ge, J., Zhang, Y., Ling, H., Yan, X., Ping, W.  2019  Monoraphidium sp. HDMA-20 is a new potential source of α-linolenic acid and eicosatetraenoic acid.  Lipids Health Dis., 18, 56 (article ID). NIES-244 Coelastrum astroideum
Han, J.-I., Yao, J., Lee, C., Park, J., Choi, Y.-E.  2019  A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform.  Algal Res., 39, 101464. NIES-144 Haematococcus lacustris
Shen, X.-F., Qin, Q.-W., Yan, S.-K., Huang, J.-L., Liu, K., Zhou, S.-B.  2019  Biodiesel production from Chlorella vulgaris under nitrogen starvation in autotrophic, heterotrophic, and mixotrophic cultures.  J. Appl. Phycol. NIES-227 Chlorella vulgaris var. vulgaris
Nomura, M., Atsuji, K., Hirose, K., Shiba, K., Yanase, R., Nakayama, T., Ishida, K-I., Inaba, K.  2019  Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae.  Biol. Open, 8, bio036590 (article ID). NIES-4122 Chrysochromulina sp.
Takaara, T., Sasaki, S., Fujii, M., Ito, H., Masago, Y., Omura, T.  2019  Lectin-stimulated cellular iron uptake and toxin generation in the freshwater cyanobacterium Microcystis aeruginosa.  Harmful Algae, 83, 25-33. NIES-478 Microcystis aeruginosa
Religia, P., Kato, Y., Fukushima, E. O., Matsuura, T., Muranaka, T., Watanabe, H.  2019  Atrazine exposed phytoplankton causes the production of non-viable 2 offspring on Daphnia magna.  Mar. Environ. Res., 145, 177-183. NIES-35 Raphidocelis subcapitata
Nakada, T., Tsuchida, Y., Tomita, M.  2019  Improved taxon sampling and multigene phylogeny of unicellular chlamydomonads closely related to the colonial volvocalean lineage Tetrabaenaceae-Goniaceae-Volvocaceae (Volvocales, Chlorophyceae).  Mol. Phylogenet. Evol., 130, 1-8. NIES-418 Astrephomene gubernaculifera,
NIES-437 Chlamydomonas fasciata,
NIES-456 Eudorina elegans,
Hiramatsu, K., Ideguchi, T., Yonamine, Y., Lee, S. W., Luo, Y., Hashimoto, K., Ito, T., Hase, M., Park, J.-W., Kasai, Y., Sakuma, S., Hayakawa, T., Arai, F., Hoshino, Y., Goda, K.  2019  High-throughput label-free molecular fingerprinting flow cytometry.  Sci. Adv., 5, eaau0241 (article ID). NIES-48 Euglena gracilis,
NIES-144 Haematococcus lacustris
Mathiot, C., Ponge, P., Gallard, B., Sassi, J.-F., Delrue, F., Le Moigne, N.  2019  Microalgae starch-based bioplastics: screening of ten strains and plasticization of unfractionated microalgae by extrusion.  Carbohydr. Polym., 208, 142-151. NIES-94 Scenedesmus acutus,
NIES-227 Chlorella vulgaris var. vulgaris,
NIES-2152 Parachlorella kessleri,
Tsuchikane, Y., & Sekimoto, H.  2019 The genus Closterium, a new model organism to study sexual reproduction in streptophytes.  New Phytol., 221, 99-104. NIES-67, NIES-69 Closterium peracerosum-strigosum-littorale complex
Nagai, M., Hirano, T., Shibata, T.  2019  Phototactic algae-driven unidirectional transport of submillimeter-sized cargo in a microchannel.  Micromachines, 10, 130 (article ID). NIES-865 Volvox carteri f. nagariensis
Hwang, S. W., Choi, H. I., Sim, S. J.  2019  Acidic cultivation of Haematococcus pluvialis for improved astaxanthin production in the presence of a lethal fungus.  Bioresour. Technol., 278, 138-144. NIES-144 Haematococcus lacustris
Antoshvili, M. Caspy, I., Hippler, M., Nelson, N.  2019  Structure and function of photosystem I in Cyanidioschyzon merolae.  Photosynth Res., 139, 499-508. NIES-1804 Cyanidioschyzon merolae
Tanabe, Y. & Yamaguchi, H.  2019  Draft Genome Sequence of Microcystis aeruginosa NIES-4285, Isolated from Brackish Water (Lake Abashiri, Japan).  Microbiol Resour Announc., 8, e00001-19 (article ID). NIES-4285 Microcystis aeruginosa
Kimura, S., Yamada, T., Ban, S., Koyama, M., Toda, T.  2019  Nutrient removal from anaerobic digestion effluents of aquatic macrophytes with the green alga, Chlorella sorokiniana.  Biochem. Eng. J., 142, 170-177. NIES-2173 Chlorella sorokiniana
Higuchi, S., Sugahara, F., Pascual-Anaya, J., Takagi, W., Oisi, Y., Kuratani, S.  2019  Inner ear development in cyclostomes and evolution of the vertebrate semicircular canals.  Nature, 565, 347–350. NIES-3374 Chlorogonium capillatum
Zhou, L., Chen, G., Cui, N., Pan, Q., Song, X., Zou, G.  2019  Allelopathic effects on Microcystis aeruginosa and allelochemical identification in the cuture solutions of typical artificial floating-bed plants.  Bull. Environ. Contam. Toxicol., 102, 115–121. NIES-44 Microcystis aeruginosa
Kuang, X., Peng, L., Chen, A., Xeng, Q., Luo, S., Shao, J.  2019  Enhancement mechanisms of copper(II) adsorption onto kaolinite by extracellular polymeric substances of Microcystis aeruginosa (cyanobacterium).  Int. Biodeterior. Biodegrad., 138, 8-14. NIES-843 Microcystis aeruginosa
Hamamoto, Y. & Honda, D.  2019  Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem.  PLoS One, 14, e0208941 (article ID). NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-3712 Chaetoceros setoensis
Matsuzaki, R., Nozaki, H., Takeuchi, N., Hara, Y., Kawachi, M.  2019  Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov.  PLoS One, 14, e0210986 (article ID). NIES-464 Gloeomonas lateperforata,
NIES-2379, NIES-2380 Chloromonas miwae,
Hovde, B. T., Deodato, C. R., Andersen, R. A., Starkenburg, S. R., Barlow, S.B., Cattolico, R.A.  2019  Chrysochromulina: Genomic assessment and taxonomic diagnosis of the type species for an oleaginous algal clade.  Algal Res., 37, 307-319. NIES-562 Chrysochromulina parva
Davison, J. R. & Bewley, C. A.  2019  Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii.  J. Nat. Prod., 82, 148-153. NIES-1699 Chrysophaeum taylorii
Oliveira, E. D. C. de, Cunha, A. C. da, Silva, N. B. da, Castelo-Branco, R., Morais, J., Schneider, M. P. C., Faustino, S. M. M., Ramos, V., Vasconcelos, V.  2019  Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River.  Phytotaxa, 387, 269-288. NIES-504 Leptolyngbya sp.,
NIES-512 Pseudanabaena foetida var. intermedia
Ohmura, Y., Takeshita, S., Kawachi, M.  2019  Photobiont diversity within populations of a vegetatively reproducing lichen, Parmotrema tinctorum, can be generated by photobiont switching.  Symbiosis NIES-1446, NIES-1447, NIES-1448, NIES-1449, NIES-1450, NIES-1451, NIES-1452, NIES-1453, NIES-1454, NIES-1455 Trebouxia corticola
Tamamizu, K. & Kumazaki, S.  2019  Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation.  Biochim. Biophys. Acta-Bioenerg., 1860, 78-88. NIES-2095 Anabaena variabilis,
NIES-2160 Parachlorella kessleri
Choi, H. I., Lee, J. S., Choi, J. W., Shin, Y. S., Sung, Y. J., Hong, M. E., Kwak, H. S., Kim, C. Y., Sim, S. J.  2019  Performance and potential appraisal of various microalgae as direct combustion fuel.  Bioresour. Technol., 273, 341-349. NIES-144 Haematococcus lacustris
Zhang, H., Meng, G., Mao, F., Li, W., He, Y., Gin, K. Y.-H., Ong, C. N.  2019  Use of an integrated metabolomics platform for mechanistic investigations of three commonly used algaecides on cyanobacterium, Microcystis aeruginosa.  J. Hazard. Mater., 367, 120-127. NIES-843 Microcystis aeruginosa
Tomita, Y., Takeya, M., Suzuki, K., Nitta, N., Higuchi, C., Marukawa-Hashimoto, Y., Osanai, T.  2019  Amino acid excretion from Euglena gracilis cells in dark and anaerobic conditions.  Algal Res., 37, 169-177. NIES-48 Euglena gracilis
Cunningham, B. R., Greenwold, M. J., Lachenmyer, E. M., Heidenreich, K, M., Davis, A. C., Dudycha, J. L., Richardson, T. L.  2019  Light capture and pigment diversity in marine and freshwater cryptophytes.  J. Phycol. NIES-697 Cryptomonas acuta,
NIES-698 Cryptomonas irregularis,
NIES-701 Rhodomonas chrysoidea,
Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souzade, C., Pinto, E., Hansen, P. J., Larsen, T. O., Varga, E.  2019  A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum.  Harmful Algae, 81, 10-17. NIES-1017 , NIES-1018 , NIES-1812 Prymnesium parvum
Zhu, S., Qin, L., Feng, P., Shang, C., Wang, Z., Yuan, Z.  2019  Treatment of low C/N ratio wastewater and biomass production using co-culture of Chlorella vulgaris and activated sludge in a batch photobioreactor.  Bioresour. Technol., 274, 313-320. NIES-227 Chlorella vulgarisa var. vulgarisa
Tamamizu, K., Kumazaki, S.  2019  Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation.  BBA-Bioenergetics, 1860, 78-88. NIES-2095 Anabaena variabilis
Yu, Y., Zeng, Y., Li, J., Yang, C., Zhang, X., Luo, F., Dai, X.  2019  An algicidal Streptomyces amritsarensis strain against Microcystis aeruginosa strongly inhibits microcystin synthesis simultaneously.  Sci. Total Environ., 650, 34-43. NIES-44 , NIES-90 , NIES-843 Microcystis aeruginosa

2. Reference list published in 2018

Reference Strain (s)
Matsuo, M., Katahata, A., Satoh, S., Matsuzaki, M., Nomura, M., Ishida, K-I., Inagaki, Y., Obokata, J.  2018  Characterization of spliced leader transsplicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer.  PLoS One, 13, e0200961 (article ID). NIES-4060 Paulinella micropora
Delmont, T. O., Eren, A. M.  2018  Linking pangenomes and metagenomes: the Prochlorococcus metapangenome.  PeerJ, 6, e4320 (article ID). NIES-2880 Prochlorococcus marinus
Wei, K., Amano, Y., Machida, M., Asukabe, H., Harada, K.  2018  Effects of light and potassium ion on buoyancy regulation with gas vesicle in a cyanobacterium Microcystis aeruginosa NIES-843.  Water Air Soil Pollut., 229, 352 (article ID). NIES-843 Microcystis aeruginosa
Chamizo, S., Mugnai, G., Rossi, F., Certini, G., De Philippis, R.  2018  Cyanobacteria inoculation improves soil stability and fertility on different textured soils: Gaining insights for applicability in soil restoration.  Front. Environ. Sci., 6, 49 (article ID). NIES-1956 Scytonema javanicum,
NIES-2121 Phormidium ambiguum
Inoue-Sakamoto, K., Tanji, Y., Yamaba, M., Natsume, T., Masaura, T., Asano, T., Nishiuchi, T., Sakamoto, T.  2018  Characterization of extracellular matrix components from the desiccation-tolerant cyanobacterium Nostoc commune.  J. Gen. Appl. Microbiol., 64, 15-25. NIES-2108 Nostoc punctiforme,
NIES-2538, NIES-3989, NIES-3990, NIES-3991 Nostoc commune
Magonono, M., Oberholster, P. J., Addmore, S., Stanley, M., Gumbo, J. R.  2018  The presence of toxic and non-toxic Cyanobacteria in the sediments of the Limpopo River Basin: Implications for human health.  Toxins, 10, 269 (article ID). NIES-4103 Nostoc sp.
Hong, M. E.1, Choi, H. I., Kwak, H. S., Hwang, S. W., Sung, Y. J., Chang, W. S., Sim, S. J.  2018  Rapid selection of astaxanthin-hyperproducing Haematococcus mutant via azide-based colorimetric assay combined with oil-based astaxanthin extraction.  Bioresour. Technol., 267, 175-181. NIES-144 Haematococcus lacustris
Kawamura, K., Sumii, K., Matsumoto, M., Nakase, D., Kosaki, Y., Ishikawa, M.  2018  Determining the optimal cultivation strategy for microalgae for biodiesel production using flow cytometric monitoring and mathematical modeling.  Biomass Bioenerg., 117, 24-31. NIES-2168 Chlorella sorokiniana
Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W.  2018  A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales.  Harmful Algae, 77, 93-107. NIES-81 Aphanizomenon flos-aquae f. gracile
Choi, H. J., Joo, J.-H., Kim, J.-H., Wang, P., Ki, J.-S.  2018  Morphological characterization and molecular phylogenetic analysis of Dolichospermum hangangense (Nostocales, Cyanobacteria) sp. nov. from Han River, Korea.  Algae, 33, 143-156. NIES-817, NIES-1681, NIES-1683, NIES-1934 Dolichospermum planctonicum
Toyama, T., Kasuya, M., Hanaoka, T., Kobayashi, N., Tanaka, Y., Inoue, D., Sei, K., Morikawa, M., Mori, K.  2018  Growth promotion of three microalgae, Chlamydomonas reinhardtii, Chlorella vulgaris and Euglena gracilis, by in situ indigenous bacteria in wastewater efuent.  Biotechnol. Biofuels, 11, 176 (article ID). NIES-48 Euglena gracilis,
NIES-2172 Chlorella vulgaris,
NIES-2235 Chlamydomonas reinhardtii
Pröschold, T. & Darienko, T.  2018  The distinctions between Chlamydomonas incerta Pascher and Chlamydomonas globosa J.W. Snow and their taxonomic consequences.  Notulae Algarum, 56 NIES-2462 Chlamydomonas globosa
Boonmak, P., Liu, X., Ban, S., Sanoamuang, L.  2018 Effects of different algal diets and carbon supplies on larval development, growth and survival in the freshwater copepod Mongolodiaptomus malaindosinensis (Copepoda: Calanoida).  Plankton Benthos Res., 13, 163-172. NIES-282 Cryptomonas tetrapyrenoidosa
Allen, J. W., Tevatia, R., Demirel, Y., DiRusso, C. C., Black, P. N.  2018  Induction of oil accumulation by heat stress is metabolically distinct from N stress in the green microalgae Coccomyxa subellipsoidea C169.  PLoS One, 13, e0204505 (article ID). NIES-2166 Coccomyxa subellipsoidea
Higo, A., Kawashima, T., Borg, M., Zhao, M., López-Vidriero, I., Sakayama, H., Montgomery, S, A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T., Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y., Yamato, K. T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J. M., Twell, D., Berger, F., Araki, T.  2018  Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants.  Nat. Commun., 9, 5283 (article ID). NIES-67 , NIES-68 Closterium peracerosum-strigosum-littorale complex
Sun, L. W., Jiang, W. J.4, Zhang, J. Y., Wang, W. Q., Du, Y., Sato, H., Kawachi, M., Yu, R.  2018  Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS.  Environ. Monit. Assess., 190, 712 (article ID). NIES-206 Oscillatoria animalis,
NIES-230 Merismopedia tenuissima,
NIES-843 Microcystis aeruginosa,
Tsuchikane, Y., Kobayashi, H., Kato, M., Watanabe, J., Wu, J. T., Sekimoto, H.  2018  Identification of a new mating group and reproductive isolation in the Closterium peracerosum–strigosum–littorale complex.  J. Plant Res., 131, 735–746. NIES-53 , NIES-54 , NIES-55 , NIES-64 , NIES-65 , NIES-66 , NIES-67 , NIES-68 , NIES-261 , NIES-262 Closterium peracerosum–strigosum–littorale complex
Lee, J.-Y., Jeong, S.-Y.  2018  Characteristics and effects of algal-lytic bacterium for control of fresh water microalgae.  J. Eng. Appl. Sci., 13, 2803-2808. NIES-298 Microcystis aeruginosa
Tasmin, R., Shimasaki, Y., Tsuyama, M., Qiu, X., Khalil, F., Mukai, K., Khanam, M. R. M., Yamada, N., Fukuda, S., Kang, I. J., Oshima, Y.  2018  Effects of water temperature and light intensity on the acute toxicity of herbicide thiobencarb to a green alga, Raphidocelis subcapitata.  Environ. Sci. Pollut. Res., 25, 25363–25370. NIES-35 Raphidocelis subcapitata
Fang, L., Leliaert, F., Novis, P. M., Zhang, Z., Zhu, H., Liu, G., Penny, D., Zhong, B.  2018  Improving phylogenetic inference of core Chlorophyta using chloroplastsequences with strong phylogenetic signals and heterogeneous models.  Mol. Phylogenet. Evol., 127, 248-255. NIES-154 Kentrosphaera sp. ,
NIES-537 Ulothrix zonata,
NIES-1837 Blidingia minima,
Hong, J. W., Kim, O. H., Jo, S. W., Kim, H., Jeong, M. R., Yoon, H. S.  2018  Characterization of alkane-producing Nostoc sp. isolated from a summer bloom for biofuel potential.  J. Biobased Mater. Bioenergy, 12, 244-251. NIES-21 Anabaenopsis circularis,
NIES-2109 Nostoc sp.
Lee, C., Ahn, J.-W., Kim, J.-B., Kim, J. Y., Choi, Y.-E.  2018  Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength.  World J. Microbiol. Biotechnol., 34, 96 (article ID). NIES-144 Haematococcus lacustris
Takahashi, S., Tomita, M., Nakada, T.  2018  Morphology and phylogeny of a Japanese strain of Chlamydomonas augustae (Volvocales, Chlorophyceae).  J. Jpn. Bot., 93, 317-321. NIES-4143 Chlamydomonas augustae
Jin, J., Zhang, X., Kusui, T.  2018  Preliminary toxicity Assessment of combined Sewer overflows in Toyama, Japan.  J. Water Environ. Technol., 16, 185-198. NIES-35 Raphidocelis subcapitata
Suzuki, Y., Saijo, H., Takahashi, K., Kofujita, H., Ashitani, T.  2018  Growth-inhibitory components in Sugi (Cryptomeria japonica) extracts active against Microcystis aeruginosa.  Cogent Environ. Sci., 4, 1466401 (article ID). NIES-87 Microcystis aeruginosa
Batista, A. M. M., Woodhouse, J. N., Grossart, H.-P., Giani, A.  2018  Methanogenic archaea associated to Microcystis sp. in field samples and in culture.  Hydrobiologia< NIES-101, NIES-102, NIES-1114 Microcystis aeruginosa
Tokodi, N., Drobac, D., Meriluoto, J., Lujić, J., Marinović, Z., Važić, T., Nybom, S., Simeunović, J., Dulić, T., Lazić, G., Petrović, T., Vuković-Gačić, B., Sunjog, K., Kolarević, S., Kračun-Kolarević, M., Subakov-Simić, G., Miljanović, B., Codd, GA., Svirčev, Z.  2018  Cyanobacterial effects in Lake Ludoš, Serbia - Is preservation of adegraded aquatic ecosystem justified?  Sci. Total Environ., 635, 1047-1062. NIES-107 Microcystis aeruginosa
Tang, X. M., Krausfeldt, L. E., Shao, K., LeCleir, G. R., Stough, J. M. A., Gao, G., Boyer, G. L, Zhang, Y., Paerl, H. W., Qin, B., Wilhelm, S. W.  2018  Seasonal gene expression and the ecophysiological implications of toxic Microcystis aeruginosa blooms in Lake Taihu.  Environ. Sci. Technol. NIES-843 Microcystis aeruginosa
Muñoz, H. E, Li, M., Riche, C. T., Nitta, N., Diebold, E., Lin, J., Owsley, K., Bahr, M., Goda, K., Di Carlo, D.  2018  Single-cell analysis of morphological and metabolic heterogeneity in Euglena gracilis by fluorescence imaging flow cytometry.  Anal. Chem. NIES-48 Euglena gracilis
Sheng, B., Fan, F., Huang, J. K., Bai, W. M., Wang, J., Li, S. L., Li, W., Wan, M. X., Li, Y. G.  2018  Investigation on models for light distribution of Haematococcus pluvialis during astaxanthin accumulation stage with an application case.  Algal Res., 33, 182-189. NIES-144 Haematococcus lacustris
Li, M., van Zee, M., Riche, C. T., Tofig, B., Gallaher, S. D., Merchant, S. S., Damoiseaux, R., Goda, K., Di Carlo, D.  2018  A gelatin microdroplet platform for high‐throughput sorting of hyperproducing single‐cell‐derived microalgal clones.  Small NIES-48 Euglena gracilis
Yamagishi, T., Fuchida, S., Katsumata, M., Horie, Y., Mori, F., Kitayama, A., Kawachi, M., Koshikawa, H., Nozaki, T., Kumagai, H., Ishibashi, J-I., Tatarazako, N.  2018  Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981.  Ecotoxicology NIES-981 Cyanobium sp.
Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E.  2018  Multicellularity drives the evolution of sexual traits.  Am. Nat., 192, E93-E10. NIES-289 Gonium viridistellatum,
NIES-418 Astrephomene gubernaculifera,
NIES-421 Carteria crucifera,
Cellamare, M., Duval, C., Drelin, Y., Djediat, C., Touibi, N., Agogué, H., Leboulanger, C., Ader, M., Bernard, C.  2018  Characterization of phototrophic microorganisms and description of new cyanobacteria isolated from the saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean).  FEMS Microbiol. Ecol., 94. NIES-1410 Marsupiomonas sp.
Manali, K. M., Arunraj, R., Ramakrishnan, G. S., Ramya, M.  2018  Development of sensitive and specific multiplex PCR method for the detection of microcystin producing cyanobacteria in spirulina food supplements.  Food Sci. Biotechnol. NIES-843 Microcystis aeruginosa
Takeshita, T., Ivanov, I. N., Oshima, K., Ishii, K., Kawamoto, H., Ota, S., Yamazaki, T., Hirata, A., Kazama, Y., Abe, T., Hattori, M., Bišová,K., Zachleder, V., Kawano, S.  2018  Comparison of lipid productivity of Parachlorella kessleri heavy-ion beam irradiation mutant PK4 in laboratory and 150-L mass bioreactor, identification and characterization of its genetic variation.  Algal Res., 35, 416-426. NIES-2152 Parachlorella kessleri
Sakamoto, T., Hashimoto, A., Yamaba, M., Wada, N., Yoshida, T., Inoue-Sakamoto, K., Nishiuchi, T., Matsugo, S.  2018  Four chemotypes of the terrestrial cyanobacterium Nostoc communePhycol. Res. NIES-2538, NIES-3989, NIES-3990 Nostoc commune
Ito, T., Okabe, K., Mori, M.  2018  Growth reduction of Microcystis aeruginosa by clay ball elution solution.  Appl. Clay Sci., 162, 223-229. NIES-71 Achnanthidium minutissimum,
NIES-1068 Microcystis aeruginosa
Pröschold, T., Darienko, T., Krienitz, L., Coleman, A. W.  2018  Chlamydomonas schloesseri sp. nov. (Chlamydophyceae, Chlorophyta) revealed by morphology, autolysin cross experiments, and multiple gene analyses.  Phytotaxa, 362, 21-38. NIES-2462 Chlamydomonas globosa
Guionet, A., Oura, K., Akiyama, H., Hosano, H.  2018  The narrow window of energy application for oil extraction by arc discharge.  J. Appl. Phycol. NIES-836 Botryococcus braunii
Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Nozaki, H., Smith, D. R.  2018  Exploring the limits and causes of plastid genome expansion in volvocine green algae.  Genome Biol. Evol. NIES-3780 Volvox africanus,
NIES-3982 Yamagishiella unicocca,
NIES-3984 Eudorina sp.
Matsuo, E., Inagaki, Y.  2018  Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates.  PeerJ, 6, e5345 (article ID). NIES-1868 Lepidodinium chlorophorum
China, S., Fujii, K.  2018  Isolation of high-CO2-acclimated Micractinium sp. strains from eutrophic reservoir water.  Algal Research, 34, 126-133. NIES-4129 Micractinium sp.
Guerriero, G., Sergeant, K., Legay, S., Hausman, J. F., Cauchie, H. M., Ahmad, I., Siddiqui, K. S.  2018  Novel insights from comparative in silico analysis of green microalgal cellulases.  Int. J. Mol. Sci., NIES-2863 Gonium pectorale
Zongyi, Y., Lu, L., Chen, J., Wei, D.  2018  Effect of crude glycerol on heterotrophic growth of Chlorella pyrenoidosa and Coccomyxa subellipsoidea C-169.  J. Appl. Phycol. NIES-2166 Coccomyxa subellipsoidea
Singh, H. W., Wada, R. M., Sherwood, A. R.  2018  Diurnal patterns of airborne algae in the Hawaiian Islands: a preliminary study.  Aerobiologia NIES-3755 Leptolyngby sp.,
NIES-4105 Calothrix sp.
Abeynayaka, HDL., Asaeda, T., Rashid, MH.  2018  Effects of elevated pressure on Pseudanabaena galeata Böcher in varying light and dark environments.  Environ. Sci. Pollut. Res. NIES-512 Pseudanabaena foetida var. intermedia
Engesmo, A., Strand, D., Gran-Stadniczeñko, S., Edvardsen, B., Medlin, LK., Eikrem, W.  2018  Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae).  Harmful Algae, 75, 105-117. NIES-15 Olisthodiscus luteus
Qin, L., Liu, L., Wang, Z., Chen, W., Wei, D.  2018  Efficient resource recycling from liquid digestate by microalgae-yeast mixed culture and the assessment of key gene transcription related to nitrogen assimilation in microalgae.  Bioresour. Technol., 264, 90-97. NIES-227 Chlorella vulgaris var. vulgaris
Velichko, N. V., Emelijanova, M. S., Averina, S. G., Pinevich, A. A., Pinevich, A. V.  2018  Taxonomic attribution of “Oscillatoriales” strains within the bacteriological system of cyanobacteria: Identification algorithm for operational genera.  Microbiology, 87, 393-406. NIES-3735 Limnothrix sp.
Liu, L., Chen, J., Lim, P-E., Wei, D.  2018  Dual-species cultivation of microalgae and yeast for enhanced biomass and microbial lipid production.  J. Appl. Phycol. NIES-227 Chlorella vulgaris var. vulgaris
Shimakawa, G., Murakami, A., Niwa, K., Matsuda, Y., Wada, A., Miyake, C  2018  Comparative analysis of strategies to prepare electron sinks in aquatic photoautotrophs.  Photosynth. Res. NIES-705 Chroomonas placoidea,
NIES-1959 Porphyridium aerugineum,
NIES-2138 Porphyridium purpureum,
Lei, C., Kobayashi, H., Wu, Y., Li, M., Isozaki, A., Yasumoto, A., Mikami, H., Ito, T., Nitta, N., Sugimura, T., Yamada, M., Yatomi, Y., Di Carlo, D., Ozeki, Y., Goda, K.  2018  High-throughput imaging flow cytometry by optofluidic time-stretch microscopy.  Nat. Protoc., 13, 1603-1631. NIES-48 Euglena gracilis
Garcia, N. S., Sexton, J., Riggins, T., Brown, J., Lomas, M. W., Martiny, A.C.  2018  High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions.  Front. Microbiol., 9, 543 (article ID). NIES-2690 Pelagomonas calceolata
Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C.  2018  Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes.  BMC Genomics, 19, 458 (article ID). NIES-4076, NIES-4077 Symbiodinium sp.
Hua, C., Ludsinb, S. A., Martinc, J. F., Dittmannd, E., Lee, J.  2018  Mycosporine-like amino acids (MAAs)—producing Microcystis in Lake Erie:Development of a qPCR assay and insight into its ecology.  Harmful Algae, 77, 1–10. NIES-843 Microcystis aeruginosa
Araie, H., Nakamura, H., Toney, J. L., Haigg, H. A., Plancq, J., Shiratori, T., Leavitt, P. R., Seki, O., Ishida, K-I., Sawada, K., Suzuki, I., Shiraiwa, Y.  2018  Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates.  Org. Geochem., 121, 89-103. NIES-1000 Gephyrocapsa oceanica,
NIES-2697 Emiliania huxleyi
Miao, H., Beardall, J., Gao, K.  2018  Calcification moderates the increased susceptibility to UV radiation of the coccolithophorid Gephryocapsa oceanica grown under elevated CO2 concentration: Evidence based on calcified and non-calcified cells.  Photochem. Photobiol. NIES-1318 Gephyrocapsa oceanica
Nakamura, M., Yamagiwa, Y., HigashiuraA, N., Tokino, S., Maeda, T.  2018  Fundamental study on application of the newly isolated Euglena to wastewater treatment.  Jpn. J. Water Treat. Biol., 54, 39-46. NIES-47, NIES-48, NIES-49 Euglena gracilis
Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M.  2018  Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales.  Sci Rep, 8, 8058 (article ID). NIES-35 
de Mendoza, A., Bonnet, A., Vargas-Landin, D.B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R.  2018  Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.  Nat. Commun., 9, 1341 (article ID). NIES-2285 Klebsormidium nitens
Zhao, L., Song, Y., Li, L., Gan, N., Brand, JJ., Song, L.  2018  The highly heterogeneous methylated genomes and diverserestriction-modification systems of bloom-forming Microcystis.  Harmful Algae, 75, 87-93. NIES-843, NIES-2549 Microcystis aeruginosa
Wang, Y., Seppänen-Laakso, T., Rischer, H., Wiebe, M. G.  2018  Euglena gracilis growth and cell composition under different temperature, light and trophic conditions.  PLoS One, 13, e0195329 (article ID). NIES-48 Euglena gracilis
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A.  2018  Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae.  J. Appl. Phycol. NIES-16 Skeletonema costatum
Matsuzaki, R., Nozaki, H., Kawachi, M.  2018  Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species.  PLoS One, 13, e0193603 (article ID). NIES-464 Gloeomonas lateperforata,
NIES-2379 Chloromonas miwae,
NIES-2563 Chloromonas pseudoplatyrhyncha,
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A.  2018  Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae.  J. Appl. Phycol. NIES-16 Skeletonema costatum
Watanabe, S., Nakada, T.  2018  Gymnomonas nepalensis gen. et sp. nov. for the naked flagellate strain ‘Nepal’, formerly identified as Dunaliella lateralis (Volvocales, Chlorophyceae).  Phycol. Res. NIES-3572, NIES-4107 Gymnomonas nepalensis
Mousavi, S., Najafpour, G.D., Mohammadi, M., Seifi, M.H.  2018  Cultivation of newly isolated microalgae Coelastrum sp. in wastewater.  Bioprocess. Biosyst. Eng., 41, 519-530. NIES-244 Coelastrum astroideum
Tuji, A., Nakagawa, M., Sato, M., Yamaguchi, H.  2018  A new planktonic diatom, Craticula pseudocitrus sp. nov., Naviculales, Bacillariophyceae found in Lake Kasumigaura, Japan.  Bull. Natl. Mus. Nat. Sci., Ser. B, 44, 15-22. NIES-4015 Craticula pseudocitrus
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M.  2018  Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa.  J. Genomics, 6, 30-33. NIES-2481 Microcystis aeruginosa
Temraleeva, A. D.  2018  Cyanobacterial diversity in the soils of russian dry steppes and semideserts.  Microbiology, 87, 249-260. NIES-24 Nostoc commune
Lim, A. S., Jeong, H. J., Ok, J. H., Kim, S. J.  2018  Feeding by the harmful phototrophic dinoflagellate Takayama tasmanica (Family Kareniaceae).  Harmful Algae, 74, 19-29. NIES-2411 Karenia mikimotoi
Pollner, E., Farré, E. M., Bennlng, C.  2018  Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp.  Plant Cell Reports NIES-2145 Nannochloropsis oceanica,
NIES-2146 Nannochloropsis oculata
Peng, G., Martin, R.M., Dearth, S.P., Sun, X., Boyer, G.L., Campagna, S.R., Lin, S., Wilhelm, S.W.  2018  Seasonally relevant cool temperatures interact with N chemistry to increase microcystins produced in lab cultures of Microcystis aeruginosa NIES-843.  Environ. Sci. Technol., 4127-4136.52, NIES-843 Microcystis aeruginosa
Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H.  2018  Anisogamy evolved with a reduced sexdetermining region in volvocine green algae.  Communications Biology, 1, 17 (article ID). NIES-3982, NIES-3983 Yamagishiella unicocca,
NIES-3984, NIES-3985 Eudorina sp.,
Moten, D., Batsalova, T., Basheva, D., Mladenov, R., Dzhambazov, B., Teneva, I.  2018  Outer membrane efflux protein (OMEP) is a suitable molecular marker for resolving the phylogeny and taxonomic status of closely related cyanobacteria.  Phycol. Res., 66, 31-36. NIES-39 Arthrospira platensis,
NIES-843 Microcystis aeruginosa,
NIES-2104 Leptolyngbya sp.,
Yamasaki, Y., Fujita, M., Kawano, S., Baba, T.  2018  Effect of salinity on interspecific competition between the dinoflagellate Alexandrium catenella and the raphidophyte Heterosigma akashiwo.  Aquat. Microb. Ecol., 81, 73-82. NIES-10 Heterosigma akashiwo
Htet, AN., Noguchi, M., Ninomiya, K., Tsuge, Y., Kuroda, K., Kajita, S., Masai, E., Katayama, Y., Shikinaka, K., Otsuka, Y., Nakamura, M., Honda, R., Takahashi, K.  2018  Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid.  J. Biosci. Bioeng. NIES-2151 Graesiella emersonii
Shen, X-F., Hu, H., Ma, L-L., Lam, P. K. S., Yan, S-K., Zhou, S-B., Zeng, R. J.  2018  FAMEs production from Scenedesmus obliquus in autotrophic, heterotrophic and mixotrophic cultures under different nitrogen conditions.  Environ. Sci.-Wat. Res. Technol., 4, 461-468. NIES-2280 Tetradesmus obliquus
Sun, P., Cheng, K-W., He, Y., Liu, B., Mao, X., Chen, F.  2018  Screening and identification of inhibitors of advanced glycation endproduct formation from microalgal extracts.  Food Funct., 9, 1683-1691. NIES-144 Haematococcus lacustris
Lysgaard, M. L., Eckford-Soper, L., Daugbjerg, N.  2018  Growth rates of three geographically separated strains of the ichthyotoxic Prymnesium parvum (Prymnesiophyceae) in response to six different pH levels.  Estuar. Coast. Shelf Sci., 204, 98-102. NIES-1017 Prymnesium parvum
Toyoshima, M., Sato, N.  2018  Optimization of triacylglycerol and starch production in Chlamydomonas debaryana NIES-2212 with regard to light intensity and CO2 concentration.  Microbiology, 164, 359-368. NIES-2212 Chlamydomonas debaryana
Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y.  2018  Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers.  J. Environ. Safety. NIES-109 Microcystis aeruginosa,
NIES-275 Cryptomonas ovata,
NIES-665 Staurastrum dorsidentiferum
Schlüter, L., David, G. S., Jørgensen, N. O. G., Podduturi, R., Tucci, A., Dias, A. S., da Silva, R. J.  2018  Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production.  Aquac. Environ. Interact., 10, 35-48. NIES-107 Microcystis aeruginosa
Zhu, J., Wakisaka, M.  2018  Growth promotion of Euglena gracilis by ferulic acid from rice bran.  AMB Express, 8 NIES-48 Euglena gracilis
Ranjan, P., Kateriya, S.  2018  Localization and dimer stability of a newly identifed microbial rhodopsin from apolar, non-motile green algae.  BMC Res. Notes NIES-2166 Coccomyxa subellipsoidea
Tong, S., Gao, K., Hutchins, D. A.  2018  Adaptive evolution in the coccolithophore Gephyrocapsa oceanica following 1,000 generations of selection under elevated CO2.  Glob. Change Biol. NIES-1318 Gephyrocapsa oceanica
Lee, C., Jeon, M. S., Vo, T-T., Park, C., Choi, J-S., Kwon, J., Roh, S. W., Choi, Y-E.  2018  Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria.  J. Appl. Phycol. NIES-144 Haematococcus lacustris
Featherston, J., Arakaki, Y., Hanschen, ER., Ferris, PJ., Michod, RE., Olson, BJSC., Nozaki, H., Durand PM.  2018  The 4-celled Tetrabaena socialis nuclear genome reveals the essential components for genetic control of cell number at the origin of multicellularity in the volvocine lineage.  Mol. Biol. Evol., 35, 855-870. NIES-571 Tetrabaena socialis var. socialis
Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N., Bosch, T. C.G.  2018  Metabolic co-dependence drives the evolutionary ancient Hydra-Chlorella symbiosis.  bioRxχiv. NIES-2166 Coccomyxa subellipsoidea,
NIES-2235 Chlamydomonas reinhardtii,
NIES-2541 Chlorella variabilis
Zhang, C., Chen, G., Wang, Y., Guo, C., Zhou, J.  2018  Physiological and molecular responses of Prorocentrum donghaiense to dissolved inorganic phosphorus limitation.  Mar. Pollut. Bull., 129, 562-572. NIES-144 Haematococcus lacustris
Lin, W., Zhao, D., Luo, J.  2018  RDistribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth.  J. Appl. Phycol., 30, 839-850. NIES-30 Leptolyngbya sp.,
NIES-39 Arthrospira platensis,
NIES-81 Aphanizomenon flos-aquae f. gracile,
Hanschen, ER., Herron, MD., Wiens, JJ., Nozaki, H., Michod, RE.  2018  Repeated evolution and reversibilityof self-fertilization in the volvocinegreen algae.  Evolution, 72, 386-398. NIES-418 Astrephomene gubernaculifera,
NIES-456 Eudorina elegans,
NIES-460 Eudorina illinoisensis,
Song, H., Wang, Q., Liu, X., Hu, Y., Long, J., Liu, G., Hu, Z.  2018  Phylogenic diversity and taxonomic problems of the Dictyosphaerium morphotype within the Parachlorella clade (Chlorellaceae, Trebouxiophyceae).  J. Eucaryot. Microbiol., 65, 382-391. NIES-453 Dictyosphaerium pulchellum
Sausen, N., Malavasi, V., Melkonian, M.  2018  Molecular phylogeny, systematics and revision of the type species of Lobomonas, L. francei,(Volvocales, Chlorophyta) and closely related taxa.  J. Phycol. NIES-257 Hafniomonas laevis,
NIES-418 Astrephomene gubernaculifera,
NIES-456 Eudorina elegans,
Yoo, Y.D., Seong, K.A., Kima, H.S., Jeong, H.J., Yoon, E.Y., Park, J., Kim, J.I., Shin, W., Palenik, B.  2018  Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria.  Harmful Algae, 73, 98-109. NIES-381 Eutreptiella gymnastica
Aikawa, S., Inokuma, K., Wakai, S., Sasaki, K., Ogino, C., Chang, J-S., Hasunuma, T., Kondo, A.  2018  Direct and highly productive conversion of cyanobacteria Arthrospira platensis to ethanol with CaCl2 addition.  Biotechnol. Biofuels, 11 NIES-39 Arthrospira platensis
Gómez-Lojero, C., Leyva-Castillo, L. E., Herrera-Salgado, P., Barrera-Rojas, J., Ríos-Castro, E., Gutiérrez-Cirlos, E. B.  2018  Leptolyngbya CCM 4, a cyanobacterium with far-red photoacclimation from Cuatro Ciénegas Basin, México.  Photosynthetica NIES-30 Leptolyngbya sp.
Hirashima, T., Toyoshima, M., Moriyama, T., Sato, N.  2018  Evolution of the phosphatidylcholine biosynthesis pathways in green algae: Combinatorial diversity of methyltransferases.  J. Mol. Evol., 86, 68-76. NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Mao, F., He, Y., Gin, KY.  2018  Evaluating the joint toxicity of two benzophenone-type UV filters on the Ggreen alga Chlamydomonas reinhardtii with response surface methodology.  Toxics, 6, 8 (article ID). NIES-2463 Chlamydomonas reinhardtii
Piligaeva, A.V., Sorokinaab, K.N., Shashkovab, M.V., Parmon, V.N.  2018  Screening and comparative metabolic profiling of high lipid content microalgae strains for application in wastewater treatment.  Bioresour. Technol., 250, 538-547. NIES-2164 Auxenochlorella protothecoides,
NIES-2280 Tetradesmus obliquus
Hoshina, R., Kobayashi, M., Suzaki, T., Kusuoka, Y.  2018  Brandtia ciliaticola gen. et sp. nov. (Chlorellaceae, Trebouxiophyceae) a common symbiotic green coccoid of various ciliate species.  Phycol. Res., 66, 76-81. NIES-4032, NIES-4033, NIES-4034 Carolibrandtia ciliaticola
Choi, YY., Hong, ME., Jin, ES., Woo, HM., Sim, SJ  2018  Improvement in modular scalability of polymeric thin-film photobioreactor for autotrophic culturing of Haematococcus pluvialis using industrial flue gas.  Biores. Technol., 249, 519-526. NIES-144 Haematococcus lacustris
Ishinishi, R., Matsuura, H., Tanaka, S., Nozawa, S., Tanada, K., Kawashita, N., Fujiyama, K., Miyasaka, H., Hirata, K.  2018  Isolation and characterization of a stress-responsive gene encoding a CHRD domain-containing protein from a halotolerant green alga.  Gene, 640, 14-20. NIES-2235 Chlamydomonas reinhardtii
Ueki, N., Wakabayashi, K.  2018  Detergent-extracted Volvox model exhibits an anterior–posterior gradient in flagellar Ca2+ sensitivity.  Proc. Natl. Acad. Sci. U. S. A., NIES-4029 Volvox rousseletii

3. Reference list published in 2017

Reference Strain (s)
Hayashia, T., Otakia, R., Hiraia, K., Tsuzukia, M., Sato, N.  2017  Optimization of seawater-based triacylglycerol accumulation in a freshwater green alga, Chlorella kessleri, through simultaneous imposition of loweredtemperature and enhanced-light intensity.  Sci. Rep., 28, 46100 (article ID). NIES-2152 Parachlorella kessleri
Sugiyama, K., Ebisawa, M., Yamada, M., Nagashima, Y., Suzuki, H., Maoka, T., Takaichi, S.  2017  Functional lycopene cyclase (CruA) in cyanobacterium, Arthrospira platensis NIES-39, and its role in carotenoid synthesis.  Plant Cell Physiol., 58, 831-838. NIES-39 Arthrospira platensis
Yiu, S. K. F., Zhang, F. F., Au, D. W. T., Ho, K. C., Xu, S. J.  2017  The tolerance of rabbitfish siganus oramin to the ichthyotoxic alga Chattonella marina.  J. Marine Biol. Aquacult., 3, 1-4. NIES-3 Chattonella marina var. marina
Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H.  2017  CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex.  Sci Rep, 7, 17873 (article ID). NIES-67, NIES-68  Closterium peracerosum-strigosum-littoralecomplex
Rekully, CM., Faulkner, ST., Lachenmyer, EM., Cunningham, BR., Shaw, TJ., Richardson, TL., Myrick, ML.  2017  Fluorescence excitation spectroscopy for phytoplankton species classification using an all-pairs method: Characterization of a system with unexpectedly low rank.  Appl. Spectrosc. NIES-704 Chroomonas dispersa
Kusui, T., Itatsu, Y., Jin, J.  2017  Whole effluent toxicity assessment of industrial effluents.  In Toxicity and biodegradation testing, Eds. by Bidoia, E. D. & Montagnolli, R. N., Humana Press, New York, NY, 331-347. NIES-35 Pseudokirchneriella subcapitata
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E.  2017  Deletion of psbQ’ gene in Cyanidioschyzon merolae reveals the function of extrinsic PsbQ’ in PSII.  Plant Mol. Biol. NIES-3377 Cyanidioschyzon merolae
Johansen, JR., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J Jr., Štenclová, L., Hauer, T.  2017  Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria).  PLoS One, 12, e0186393 (article ID). NIES-2130 Scytonema sp.
Ando, D., Fujisawa, T., Katagi, T.  2017  Fate of flumioxazin in aquatic plants: Two algae (Pseudokirchneriella subcapitata, Synechococcus sp.), duckweed (Lemna sp.), and water milfoil (Myriophyllum elatinoides).  J. Agric. Food Chem., 65, 8813-8822. NIES-35 Pseudokirchneriella subcapitata,
NIES-937 Synechococcus sp.
Kawai, S., Araki, S., Kodama, Y.  2017  No mutual symbiosis following infection of algae-free Paramecium bursaria with symbiotic algae from Mayorella viridis.  Symbiosis NIES-692 Chlorogonium capillatum
Mao, F., He, Y., Kushmaro, A., Gin, KY.  2017  Effects of benzophenone-3 on the green alga Chlamydomonas reinhardtii and the cyanobacterium Microcystis aeruginosa.  Aquat. Toxicol., 193, 1-8. NIES-843 Microcystis aeruginosa,
NIES-2463 Chlamydomonas reinhardtii
Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M.  2017  Growth promotion effect of alginate oligosaccharides on Spirulina analyzed by repeated batch culture.  J. Jpn. Inst. Energy, 96, 352-356. NIES-39 Arthrospira platensis
Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., Rodríguez, F., Noël, M.-H., Vaulot, D., Eikrem, W.  2017  Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.  Sci Rep, 7, 14019 (article ID). NIES-2755 Chloropicon sieburthii,
NIES-2756 Chloroparvula pacifica,
NIES-2758 Chloroparvula japonica
Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY.  2017  Acidophilic green algal genome provides insights into adaptation to an acidic environment.  Proc. Natl. Acad. Sci. U. S. A., 114, E8304–E8313. NIES-2499 Chlamydomonas eustigma
Kondo, R., Okamura, T.  2017  Growth and grazing kinetics of the facultative anaerobic nanoflagellate, Suigetsumonas clinomigrationis.  Microbes Environ., 32, 80-83. NIES-3647 Suigetsumonas clinomigrationis
Huang, Y-T., Lai, C-W., Wu, B-W., Lin, K-S., Wu, J.C.S., Md Shahriar A Hossain, Yamauchi, Y., Wu, C.-W.  2017  Advances in bioconversion of microalgae with high biomass and lipid productivity.  J. Taiwan Inst. Chem. Eng., 79, 37-42. NIES-2199 Botryococcus braunii
Pengfei, J., Wang, H., Huang, W., Liu, W., Fan, Y., Miao, W.  2017  The allelopathic effect and safety evaluation of 3,4-Dihydroxybenzalacetone on Microcystis aeruginosa.  Pest. Biochem. Physiol. NIES-843 Microcystis aeruginosa
Wang, C., Wang, Z., Luo, F., Li, Y.  2017  The augmented lipid productivity in an emerging oleaginous model alga Coccomyxa subellipsoidea by nitrogen manipulation strategy.  World J. Microbiol. Biotechnol., 33, 160 (article ID). NIES-2166 Coccomyxa subellipsoidea
Yonamine, Y., Suzuki, Y., Ito, T., Miura, Y., Goda, K., Ozeki, Y., Hoshino, Y.  2017  Monitoring photosynthetic activity in microalgal cells by Raman spectroscopy with deuterium oxide as a tracking probe.  ChemBioChem, 18, 2063–2068. NIES-48 Euglena gracilis
Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Suzuki, Y., Park, CB., Yasui, N., Kobayashi, K., Tanaka, Y., Yamashita, N., Minamiyama, M.  2017  Water quality comparison of secondary effluent and reclaimed water to ambient river water of southern Okinawa Island via biological evaluation.  Environ. Monit. Assess., 189, 442 (article ID). NIES-35 Pseudokirchneriella subcapitata
Klemenčič, M., Funk, C.  2017  Structural and functional diversity of caspase homologues in non-metazoan organisms.  Protoplasma NIES-44 Microcystis aeruginosa,
NIES-843 Microcystis aeruginosa,
NIES-2549 Microcystis aeruginosa
Silas, S., Makarova, KS., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S.9, Krishnamurthy, SR., Fu, BXH., Hansen, LL., Wang, D., Sullivan, MB., Millard, A., Clokie, MR., Bhaya, D., Lambowitz, AM., Kyrpides, NC., Koonin, EV., Fire, AZ.  2017  On the origin of reverse transcriptaseUsing CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires.  mBio, 8, e00897-17 (article ID). NIES-39 Arthrospira platensis
Ohkubo, N., Tomaru, Y., Yamaguchi, H., Kitatsuji, S., Mochida, K.  2017  Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major).  Fish Physiol. Biochem., 43, 1603–1612. NIES-6 Heterosigma akashiwo
Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H.  2017  Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton.  ACS Omega, 2, 3175–3182. NIES-324 Skeletonema marinoi-dohrnii complex
Kerfeld, CA., Melnicki, MR., Sutter M., Dominguez-Martin, MA.  2017  Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs.  New Phytol., 215, 937-951. NIES-39 Arthrospira platensis,
NIES-81 Aphanizomenon flos-aquae,
NIES-843 Microcystis aeruginosa
Katsumata, M., Ikushima, Y., Bennett, K., Sato, Y., Takeuchi, A., Tatarazako, N., Hakamata, T.  2017  Validation of rapid algal bioassay using delayed fluorescence in an interlaboratory ring study.  Sci. Total Environ., 605-606, 842-851. NIES-35 Pseudokirchneriella subcapitata
Takenaka, S., Yoshikawa, T., Kadowaki, S., Okunishi, S., Maeda, H.  2017  Microflora in the soft Ttissue of the pacific oyster Crassostrea gigas exposed to the harmful microalga Heterosigma akashiwo.  Biocontrol Science, 22, 79-87. NIES-5 Heterosigma akashiwo
Tamura, I., Yasuda, Y., Kagota, K., Yoneda, S., Nakada, N., Vimal Kumar, V., Yutaka Kameda, Y., Kumiko Kimura, K., Norihisa Tatarazako, N., Hiroshi Yamamoto, H.  2017  Contribution of pharmaceuticals and personal care products (PPCPs) to whole toxicity of water samples collected in effluent-dominated urban streams.  Ecotox. Environ. Safe., 144, 338-350. NIES-35 Pseudokirchneriella subcapitata
Ngoc, N.M., Yokota, K., James, M., Inoue, Y.  2017  The estimation of bioavailable phosphorus in particulate forms by ultrasonic treatment.  J. Environ. Chem. Eng. NIES-44 Microcystis aeruginosa
Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M.  2017  Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection.  Microb. Resour. Syst., 33, 19-29. NIES-1 Chattonella marina var. antiqua,
NIES-8 Pleurochrysis roscoffensis,
NIES-9 Heterosigma akashiwo,
Yamamoto, K., Kawai-Toyooka, H., Hamaji, T., Tsuchikane, Y., Mori, T., Takahashi, F., Sekimoto, H., Ferris, P. J., Nozaki, H.  2017  Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids.  PLoS One, 12, e0180313 (article ID). NIES-3780 Volvox africanus,
NIES-3782 Volvox reticuliferus,
NIES-3783 Volvox reticuliferus,
Nozue, S., Katayama, M., Terazima, M., Kumazaki, S.  2017  Comparative study of thylakoid membranes in terminal heterocysts and vegetative cells from two cyanobacteria, Rivularia M-261 and Anabaena variabilis, by fluorescence and absorption spectral microscopy.  Biochim. Biophys. Acta-Bioenerg., 1858, 742-749. NIES-2095 Anabaena variabilis
Tomaru, Y., Toyoda, K., Kimura, K.  2017  Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan.  Hydrobiologia NIES-3714 Chaetoceros tenuissimus,
NIES-3716 Chaetoceros sp.
Kishi, M., Toda, T.  2017  Carbon fixation properties of three alkalihalophilic microalgal strains under high alkalinity.  J. Appl. Phycol. NIES-39 Arthrospira platensis,
NIES-2257 Dunaliella salina
Takeda, F., Minamiyama, M., Okamoto, S.  2017  Seasonal variation in ability of wastewater treatment for reduction in biological effects evaluated based on algal growth.  J. Water Environ. Technol., 15, 96-105. NIES-35 Pseudokirchneriella subcapitata
Hong, M., Choi, S. P., Park, Y., Kim, Y., Chang, W. S., Kim, B. W., Sim, S. J.  2017    , , . NIES-94 Scenedesmus acutus
Choi, Y. Y., Joun, J. M., Lee, J., Hong, M. E., Pham, H., Chang, W. S., Sim, S. J.  2017  Development of large-scale and economic pH control system for outdoor cultivation of microalgae Haematococcus pluvialis using industrial flue.  Biores. Technol., 244, 1235-1244. NIES-144 Haematococcus lacustris
Lapsongpon, T., Leungprasert, S., Yoshimura, C.  2017  Pre-chlorination contact time and the removal and control of Microcystis aeroginosa in coagulation.  7th International Conference on Environment and Industrial Innovation, 012011 (article ID). NIES-843 Microcystis aeruginosa
Baresova, M., Pivokonsky, M., Novotna, K., Naceradska, J., Branyik, T.  2017  An application of cellular organic matter to coagulation of cyanobacterial cells (Merismopedia tenuissima).  Wat. Res., 122, 70-77. NIES-230 Merismopedia tenuissima
Bertuzz, S., Gustavs, L., Pandolfini, G., Tretiac, M.  2017  Heat shock treatments for the control of lithobionts: A case study with epilithic green microalgae.  Int. Biodeterior. Biodegrad., 123, 236-243. NIES-2166 
Ohtaka,K., Hori, K., Kanno, Y., Seo, M., Ohta, H.  2017  Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens.  Plant Physiol., 174, 1621-1632. NIES-2285 Klebsormidium nitens
Grochau-Wright, Z. I., Hanschen, E. R., Ferris, P. J., Hamaji, T., Nozaki, H., Olson, B. J. S. C., Michod, R. E.  2017  Genetic basis for soma is present in undifferentiated volvocine green algae.  J. Evol. Biol., 30, 1205–1218. NIES-1861 Yamagishiella unicocca
Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, D. J., Archibald, J. M., Slamovits, C. H., 2017  The new red algal subphylum proteorhodophytina comprises the largest and most divergent plastid genomes known.  Curr. Biol., 27, 1-8. NIES-2662 Corynoplastis japonica,
NIES-2742 Bulboplastis apyrenoidosa
Guionet, A., Hosseini, B., Teissié, J., Akiyama, H., Hosseini, H.  2017  A new mechanism for efficient hydrocarbon electro-extraction from Botryococcus braunii.  Biotechnol. Biofuels, 10, . NIES-836 Botryococcus braunii
Cheng, T., Zhang, W., Xhang, W., Yuan, G., Wang, H., Liu, T.  2017  An oleaginous filamentous microalgae Tribonema minus exhibits high removing potential of industrial phenol contaminants.  Biores. Technol., 238, 749-754. NIES-2175 Muriella zofingiensis
Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K.  2017  Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii.  Phytochemistry, 135, 18-23. NIES-2237 Chlamydomonas reinhardtii
Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y.  2017  Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae.  Front. Plant Sci., 8, e343 (article ID). NIES-3377 Cyanidioschyzon merolae
Shiba, K., Inaba, K.  2017  Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae.  J. Plant Res., 130, 465-473. NIES-626 Pterosperma cristatum
Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R.  2017  Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae.  Genome Biol. Evol., 9, 993-999. NIES-3982 Yamagishiella unicocca,
NIES-3984 Eudorina sp.
Ngoc, N.M., Inoue, Y., Yokota, K.  2017  Ultrasonic extraction method for quantifying bioavailable phosphorus in particulate form.  J. Environ. Chem. Eng., 5, 2498-2507. NIES-44 Microcystis aeruginosa
Reichert,M., Bergmann,S. M., Hwang, J., Buchholz, R., Lindenberger, C.  2017  Antiviral activity of exopolysaccharides from Arthrospira platensis against koi herpesvirus.  J. Fish Dis., 40, 1441–1450. NIES-39 Arthrospira platensis
Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M.  2017  Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema.  Phycol. Res., 65, 217-225. NIES-16 Skeletonema marinoi-dohrnii complex,
NIES-223 Skeletonema marinoi-dohrnii complex,
NIES-2837 Skeletonema ardens,
Kohira, M., Matsumoto, T., Yamada, Y., Nanba, N., Kado, R.  2017  Effects of hydrogen peroxide on phytoplanktons, seaweed gametophytes, marine harpacticoid copepod and striped barnacle larvae.  Sessile Organisms, 34, 1-12 (in Japanese with English summary). NIES-235 Heterocapsa triquetra,
NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-586 Chaetoceros didymus,
Sekimoto, H.  2017  Sexual reproduction and sex determination in green algae.  J. Plant Res., 130, 423-431. NIES-235 Heterocapsa triquetra,
NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-586 Chaetoceros didymus,
Honda, R., Teraokab, Y., Noguchia, M., Yang, S.  2017  Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor.  J. Water Environ. Technol., 15, 1-11. NIES-2170 Chlorella vulgaris
Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y.  2017  Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex.  Chemosphere, 175, 200-209. NIES-324 Skeletonema marinoi-dohrnii complex
Yamagishi, T., Horie, Y., Tatarazako, N. 2017  Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata.  Chemosphere, 174, 1-7. NIES-35 Pseudokirchneriella subcapitata
Xuan, H., Dai, X., Li, J., Zhang, X., Yang, C., Luo, F.  2017  A Bacillus sp. strain with antagonistic activity against Fusarium graminearum kills Microcystis aeruginosa selectively.  Sci. Total Environ., 583, 214-221. NIES-44 Microcystis aeruginosa,
NIES-90 Microcystis aeruginosa,
NIES-843 Microcystis aeruginosa
Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017  Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.  PLoS One, 12, e0171259 (article ID). NIES-35 Pseudokirchneriella subcapitata
Kimura, K., Tomaru, Y. 2017  Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses.  Aquat. Microb. Ecol., 79, 79-83. NIES-3714 Chaetoceros tenuissimus,
NIES-3716 Chaetoceros sp.
Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017  Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01.  Biological Sciences in Space, 31, 1-8. NIES-2109 Nostoc sp.
Nagai, T.  2017  Predicting herbicide mixture effects on multiple algal species using mixture toxicity models.  Environ. Toxicol. Chem. NIES-71 Achnanthidium minutissimum,
NIES-487 Nitzschia palea,
NIES-512 Pseudanabaena foetida var. intermedia,
NIES-797 Desmodesmus subspicatus
Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N.  2017  Characterization of phosphoethanolamine-N-methyltransferases in green algae.  Biochem. Biophys. Res. Commun., 488, 141-146. NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Nakada, T., Tomita, M.  2017  Morphology and phylogeny of a new wall‐less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae).  J. Phycol., 53, 108-117. NIES-2254 Dunaliella parva,
NIES-2320 Rhysamphichloris similis,
NIES-3705 Rhysamphichloris curta,
Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K.  2017  Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii.  Acta Crystallogr. F-Struct. Biol., F73, 86-89. NIES-2237 Chlamydomonas reinhardtii
Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017  Application of MALDI Biotyper to cyanobacterial profiling.  Rapid Commun. Mass Spectrom., 31, 325-332. NIES-73 Sphaerospermopsis kisseleviana,
NIES-89 Microcystis aeruginosa,
NIES-102 Microcystis aeruginosa,
Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017  High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy.  Proc. of SPIE, 10076 NIES-48 Euglena gracilis
Nobusawa, T., Hori, K., Mori, H., Kurokawa, K., Ohta, H. 2017  Differently localized lysophosphatidic acid acyltransferasescrucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis.  Plant J., 90, 547–559. NIES-2145 Nannochloropsis oceanica
Hamasaki, A.  2017  Study of the optimal cultivation for micro-algae.  The 12th Conference on Biomass Science, 27-28 (in Japanese with English summary). NIES-226 Graesiella emersonii
Kobayashi, N., Yukumoto, M.  2017  Improvement of micro algae yield by culture condition optimization.  The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary). NIES-96 Desmodesmus sp.
Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017  Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis.  Sci Rep., 7, 41022 (article ID). NIES-48 Euglena gracilis
Takeya, M., Hirai, M. Y., Osanai, T. 2017  Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid eesidue in cyanobacteria.  Sci Rep., 7, 41080 (article ID). NIES-3756 Nostoc sp.
Misumi, M., Sonoike, K. 2017  Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa.  Sci Rep., 7, 46100 (article ID). NIES-547 Cyanophora paradoxa
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017  Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970.  GenomeA, 5, e00139-17 (article ID). NIES-970 Synechococcus sp.
Livingston, G., Fukumori, K., Provete, D. B., Kawachi, M., Takamura, N., Leibold, M. A. 2017  Predators regulate prey species sorting and spatialdistribution in microbial landscapes.  J. Anim. Ecol. NIES-2239 Chlamydomonas reinhardtii
Satjarak, A., Graham, L. E. 2017  Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes.  J. Phycol., 53, 415-424. NIES-254 Pyramimonas parkeae
Inamura, E., Katayama, T., Taguchi, S. 2017  Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans.  Plankton Benthos Res., 12, 15-24. NIES-218 Prorocentrum micans
Watanabe, S., Lewis, L. A. 2017  Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy.  Phycologia, 56, 329-353. NIES-155 Chlorococcum chlorococcoides
Tadama, S., Shiraishi, H. 2017  Growth of the edible microalga Arthrospira platensis in relation to boron supply.  International Journal of GEOMATE, 12, 90-95. NIES-39 Arthrospira platensis
Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017  Draft genome sequences of nine cyanobacterial strains from diverse habitats.  GenomeA, 5, e01676-16 (article ID). NIES-30 Leptolyngbya sp.,
NIES-208 Oscillatoria rosea,
NIES-592 Fischerella majo,
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017  Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris.  J. Appl. Electrochem., 47, 197-203. NIES-227 Chlorella vulgaris var. vulgaris
Shibakami, M., Sohma, M. 2017  Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films.  Carbohydr. Polym., 155, 416-424. NIES-48 Euglena gracilis
Motwalli, O., Essack, M., Jankovic, BR., Ji, B., Liu, X., Ansari, HR., Hoehndorf, R., Gao, X., Arold, ST., Mineta, K., Archer, JA., Gojobori, T., Mijakovic, I., Bajic, VB.  2017 In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria.  BMC Genomics, 18, 213-222. NIES-39 Arthrospira platensis
Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017  Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities.  Algal Research, 21, 213-222. NIES-144 Haematococcus lacustris
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017  Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan.  Fish. Sci., 83, 113-121. NIES-1 Chattonella marinavar. antiqua
Liu, X., Syuhei, B.  2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter.  J. Plankton Res., 39, 111-121. NIES-282 Cryptomonas tetrapyrenoidosa,
NIES-2235 Chlamydomonas reinhardtii
Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017  Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species.  Algal Research, 21, 191-202. NIES-144 Haematococcus lacustris
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Chloramphenicol acetyltransferase—a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae.  Protoplasma, 254, 587-596. NIES-3377 Cyanidioschyzon merolae
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments.  Plant Mol. Biol., 93, 171-183. NIES-1332 Cyanidioschyzon merolae
Iwai, S., Hurukawa, T., Yamane, K., Kawasaki, K., Osakada, K.  2017  Micro-algae cultivation and algae-oil fuel production by enrich CO2 introduction from diesel co-generation system.  Transactions of the JSME, 83, 16-00389 (article ID) (in Japanese with English summary). NIES-119 Tetradesmus dimorphus