| Cyanidioschyzon merolae | NIES-4696 |
| Eucampia cornuta | NIES-4081 |
| Eucampia zodiacus | NIES-4492 |
| Gephyrocapsa sp. | NIES-4627 |
| Merismopedia sp. | NIES-4406 |
| Mychonastes homosphaera | NIES-4546 |
| Mychonastes pushpae | NIES-4547 |
| Nitella pulchella | NIES-2833 |
| Pseudanabaena foetida var. foetida | NIES-4497, NIES-4498 |
| Pseudodidymocystis planctonica | NIES-4443 |
| Tetrastrum staurogeniaforme | NIES-4389 |
| Aurantiochytrium limacinum | NIES-3737 |
| Breviolum sp. | NIES-4271 |
| Chaetoceros didymus | NIES-4494 |
| Eucampia zodiacus | NIES-4491, NIES-4493 |
| Micromonas commoda | NIES-4096 |
| Pleodorina starrii | NIES-4649, NIES-4650 |
| Skeletonema costatum | NIES-3698 |
| Volvox biwakoensis | NIES-4661 |
| Volvox sp. Sagami | NIES-4662 |
| Ankylochrysis lutea | NIES-3894 |
| Closterium ehrenbergii | NIES-4651, NIES-4652 |
| Closterium lunula | NIES-4653, NIES-4654 |
| Eremosphaera gigas | NIES-4629 |
| Eremosphaera viridis | NIES-4630 |
| Micromonas bravo | NIES-3660, NIES-3663 |
| Micromonas commoda | NIES-3662, NIES-3664 |
| Micromonas pusilla | NIES-3661, NIES-3665 |
| Netrium elongatum | NIES-4656 |
| Netrium lanceolatum | NIES-4657, NIES-4658 |
| Oedogonium sp. | NIES-4451 |
| Oocystaenium elegans | NIES-4117 |
| Planotaenium interruptum | NIES-4655 |
| Nostoc commune | NIES-4070 |
| Abollifer globosa complex | NIES-3697 |
| Hemiselmis aquamarina | NIES-4368 |
| Phaeomonas parva | NIES-3895 |
| Sulcochrysis biplastida | NIES-3893 |
| Braarudosphaera bigelowii | NIES-4399, NIES-4400, NIES-4441 |
| Closterium peracerosum-strigosum-littorale complex | NIES-4548, NIES-4549, NIES-4550, NIES-4551, NIES-4552 |
| Nitzschia sp. | NIES-4635 |
| Prorocentrum lima | NIES-3440 |