Strain number NIES-3808  
Phylum Dinophyta  
Class Dinophyceae  
Scientific name Symbiodinium minutum T.C.LaJeunesse, J.E.Parkinson & J.D.Reimer  
Synonym  
Former name  
Common name Dinoflagellate  
Locality (Date of collection) Tennessee Reef (Depth -22m), Florida Keys, Florida U.S.A. (2002-10-20)  
Latitude / Longitude 24.74001666 /  
Habitat (Isolation source) Marine (Coral)  
History < Shoguchi, Eiichi < Coffroth, M. A.  
Isolator (Date of isolation) Coffroth, M. A. (2002-10-22)  
Identified by Coffroth, M. A.  
State of strain Subculture; Unialgal; Clonal; Non-axenic  
Culture condition
(Preculture condition)
Medium:  f/2  
Temperature:  20 C
Light intensity:  19 µmol photons/m2/sec, L/D cycle:  10L:14D
Duration:  30 D  
Gene information Whole-genome ( BASF00000000 ) , Plastid minicircle sequences ( JX094304-JX094335 ) , CO1 ( LC002801 ) , CO3 ( LC002802 ) , BAC paired-end sequences ( GA393224-GA453876 ) , Fosmid paired-end sequences ( GA453877-GA605429 )  
Cell size (min - max)  
Organization Unicellular 
Characteristics Symbiotic (corals) ; Genome decoded strain (Shoguchi, E. et al. 2013)  
Other strain no. Other strain no. : Mf1.05b.01  
Remarks Fragile species to transportation stresses; Read and agree "How to order 4.1" 
Movie  
Reference
Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding
Strain(s): 3808 
PubMed: 26199191
DOI: 10.1093/gbe/evv137

Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422.
Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles
Strain(s): 3808 
PubMed: 24881086
DOI: 10.1093/gbe/evu109

Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
Strain(s): 3808 
PubMed: 23850284
DOI: 10.1016/j.cub.2013.05.062

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