Strain number | NIES-21 | |||
---|---|---|---|---|
Phylum | Cyanophyta | |||
Class | Cyanophyceae | |||
Scientific name | Anabaenopsis circularis (G.S.West) Wołoszyńska & Miller | |||
Synonym | Anabaenopsis elenkinii f. circularis (G.S.West) Jeeji-Bai null; Anabaena flor-aquae var. circularis G.S.West 1907; Anabaena circularis var. javanica Woloszynska null; Anabaenopsis circularis f. typica Usachev 1938 | |||
Former name | ||||
Common name | Blue-green alga ; Cyanobacteria | |||
Locality (Date of collection) | ||||
Latitude / Longitude | ||||
Habitat (Isolation source) | ||||
History | < IAM (1983); | |||
Isolator (Date of isolation) | Watanabe, Atsushi | |||
Identified by | Hirano | |||
State of strain | Cryopreservation; Unialgal; Clonal; Axenic[2018 Feb] | |||
Culture condition (Preculture condition) |
Medium:
MDM (agar)
Temperature: 20 (25) C Light intensity: 4-10 (14-16) µmol photons/m2/sec, L/D cycle: 10L:14D Duration: 4 M (14 D) |
|||
Gene information | nearly complete genome ( AP018174 ) , 16S rRNA ( AB043537 AF247595 ) , cpcB, cpcA ( JF740674 ) , gyrB ( AB074773 ) , rbcL, rbcX, rbcS ( JN251747 ) , rpoC1 ( AB074796 ) , rpoD1 ( AB074823 ) , Plasmid DNA ( AP018175-AP018177 ) | |||
Cell size (min - max) | ||||
Organization | ||||
Characteristics | Genome decoded strain | |||
Other strain no. |
Other collection strain no. : IAM M-4
|
|||
Remarks | Cryopreserved; Axenic | |||
Movie |
Reference |
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Hosoda, K., Seno, S., MurakamiN., Matsuda, H., Osada, Y., Kamiura, R., Kondoh, M.
2024
Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach.
Biosystems,
235,
105087 (article ID).
Keywords: Synthetic ecosystem; Experimental model ecosystem; Microbial microcosm; Machine learning Strain(s): 21, 35, 227, 2236 PubMed: 37989470 DOI: 10.1016/j.biosystems.2023.105087 McGregor, G. B., Sendall, B. C., Niiyama, Y., Tuji, A., Willis, A. 2023 Chrysosporum ovalisporum is synonymous with the true-branching cyanobacterium Umezakia natans (Nostocales/Aphanizomenonaceae). J. Phycol., 59, 326-341. Strain(s): 21, 26, 2665, 3585, 4103, 4490 PubMed: 36680435 DOI: 10.1111/jpy.13317 Rockwell, N. C., Moreno, M. V., Martin, S. S., Lagarias, J. C. 2022 Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes. Photochem. Photobiol. Sci., 21, 471–491. Keywords: Cyanobacteriochrome; Photoisomerization; Evolution; Structure/function Strain(s): 21 PubMed: 35411484 DOI: 10.1007/s43630-022-00213-3 Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775. Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation Strain(s): 21, 23, 25, 26, 267, 2108, 2111, 3756, 4073, 4074, 4075, 4103 PubMed: 35851984 DOI: 10.1111/gbi.12514 Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID). Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy Strain(s): 19, 21, 22, 23, 25, 37, 50, 73, 267, 806, 932, 2098, 2100, 2107, 2109, 2111, 2130, 2135, 3275, 3585, 3757, 3974, 4073, 4074, 4075, 4101, 4102, 4103, 4106 PubMed: 34677568 DOI: 10.1093/dnares/dsab024 MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451. Strain(s): 21, 22, 25, 26, 30, 39, 44, 73, 87, 88, 267, 592, 806, 843, 932, 970, 2098, 2100, 2107, 2108, 2111, 2549, 3275, 3754, 3756, 3974, 4073, 4074, 4075, 4101, 4103, 4106 PubMed: 31899489 DOI: 10.1093/molbev/msz308 Hong, J. W., Kim, O. H., Jo, S. W., Kim, H., Jeong, M. R., Yoon, H. S. 2018 Characterization of alkane-producing Nostoc sp. isolated from a summer bloom for biofuel potential. J. Biobased Mater. Bioenergy, 12, 244-251. Keywords: Alkane-Producing Genes; Biofuel; Cyanobacteria; Heptadecane; Potential; Feedstoc Strain(s): 21, 2109 DOI: 10.1166/jbmb.2018.1757 Suradkar, A., Villanueva, C., Gaysina, LA., Casamatta, DA., Saraf, A., Dighe, G., Mergu, R., Singh, P. 2017 Nostoc thermotolerans sp. nov., a soil-dwelling species of Nostoc (Cyanobacteria). Int. J. Syst. Evol. Microbiol., 67, 1296-1305. Keywords: cyanobacteria; Taxonomy; Nostoc Strain(s): 21, 40, 50, 3756 PubMed: 28109209 DOI: 10.1099/ijsem.0.001800 Hosoya, R., Hamana, K., Isobe, M., Yokota, A. 2005 Polyamine distribution profiles within Cyanobacteria. Microbiol. Cult. Coll., 21, 3-8. Keywords: cyanobacteria; homospermidine; polyamine; spermidine Strain(s): 19, 21, 22, 28, 30, 34, 37, 41, 44, 45, 50, 73, 78, 79, 80, 81, 204, 208, 510, 512, 515, 592, 593, 610, 843, 846, 847, 2093, 2096, 2098, 2100, 2102, 2107, 2108, 2118, 2119, 2123, 2124, 2125, 2126, 2128, 2129, 2131, 2132, 3259, 3275, 3276, 3277 Oikawa, E. Ishibashi, Y., 2004 Species specificity of musty odor producing Phormidium tenue in Lake Kamafusa. Wat. Sci. Tech., 49, 41-46. Keywords: 16S-rDNA sequence; 2-methylisoborneol; musty odor; Phormidium tenue phylogenetic tree Strain(s): 21, 30, 33, 41, 73, 76, 512, 611 PubMed: 15237605 DOI: 10.2166/wst.2004.0529 Seo, P-S. & Yokota, A. 2003 The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Micobiol., 49, 191-203. Keywords: cyanobacteria; gyrB; phylogeny; protein evolution; rpoC1; rpoD1; 16S rDNA Strain(s): 19, 21, 22, 25, 39, 104, 2093, 2095, 2128, 3277 PubMed: 12949700 DOI: 10.2323/jgam.49.191 Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55. Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection Strain(s): 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 44, 45, 46, 50, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 73, 74, 75, 76, 77, 78, 79, 80, 81, 87, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 119, 120, 122, 123, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 137, 138, 139, 144, 147, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 162, 163, 164, 165, 166, 167, 168, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 224, 226, 227, 228, 229, 230, 231, 232, 241, 242, 243, 244, 245, 246, 248, 257, 259, 261, 262, 263, 266, 267, 268, 287, 288, 289, 290, 294, 295, 297, 298, 299, 300, 301, 302, 303, 305, 306, 308, 309, 310, 312, 313, 329, 334, 337, 338, 339, 340, 341, 342, 349, 351, 359, 360, 361, 362, 375, 378, 379, 380, 382, 384, 385, 390, 394, 396, 397, 398, 415, 416, 418, 419, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 436, 437, 438, 439, 440, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 464, 468, 469, 474, 478, 479, 480, 481, 503, 504, 505, 506, 507, 509, 510, 512, 514, 515, 522, 523, 524, 527, 528, 529, 530, 531, 532, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 592, 593, 594, 595, 596, 597, 598, 604, 610, 628, 630, 631, 632, 633, 634, 635, 636, 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649, 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662, 663, 664, 665, 666, 667, 672, 685, 686, 687, 688, 689, 690, 691, 692, 693, 694, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727, 728, 729 Oikawa, E., Ishibashi, Y., Abe, T., Umetsu, H. 2000 Phylogenetic classification of musty odor and/or toxic compounds producing cyanobacteria. Environ. Eng. Res., 37, 183-191 (in Japanese with English summary). Keywords: cyanobacteria; musty odor; 16S ribosomal RNA; PCR; phylogenetic trees Strain(s): 21, 30, 33, 41, 73, 76, 512 DOI: 10.11532/proes1992.37.183 Beltran, E. C., Neilan, B. 2000 Geographical segregation of the neurotoxin-producing cyanobacterium Anabaena circinalis. Appl. Environ. Microbiol., 66, 4468-4474. Strain(s): 19, 21, 23, 40, 41, 80 PubMed: 11010900 DOI: 10.1128/AEM.66.10.4468-4474.2000 Asada, Y. & Kawamura, S. 1986 Screening for cyanobacteria that evolve molecular hydrogen under dark and anaerobic conditions. J. Ferment. Technol., 64, 553-556. Strain(s): 19, 21, 23, 36, 39, 46, 2119, 3277 DOI: 10.1016/0385-6380(86)90081-6 Watanabe, M. M., Kasai, F., Hiwatari, T., Suda, S., Nei, T. 1984 Cryopreservation of microalgae in liquid nitrogen - Survival of algal cultures after freezing. Jpn. J. Freez. Dry., 30, 23-26 (in Japanese with English title). Strain(s): 18, 19, 21, 24, 26, 29, 31, 39, 40, 41, 44, 45, 46, 50, 73, 74, 75, 76, 77, 80, 81, 87, 88, 89, 90, 91, 93, 95, 98, 99, 100, 101, 120, 122, 131, 135, 137, 144, 151, 204, 207, 213, 257, 263, 379, 415, 2219, 2235, 2239, 2579 Ichimura, T. & Itoh, T. 1977 17. Preservation methods of microalgae (I) [17. Bisaisôrui no hozonhô (I)]. In Preservation methods of microorganisms [Biseibutsu Hozonhô], Ed. by Nei, T., University of Tokyo Press, Tokyo, pp. 355-373 (in Japanese). Strain(s): 19, 21, 22, 23, 24, 27, 28, 30, 31, 32, 33, 34, 36, 37, 38, 39, 40, 41, 44, 45, 46, 47, 48, 49, 50, 122, 123, 127, 131, 144, 152, 173, 175, 179, 180, 181, 182, 183, 185, 198, 200, 203, 206, 217, 226, 227, 241, 266, 267, 268, 295, 309, 310, 334, 338, 379, 436, 448, 450, 455, 527 Murano, F. & Fujita, Y. 1967 Comparative studies of photochemical oxidation-reduction reactions in lamellar fragments of various algae and spinach. Plant Cell Physiol., 8, 673-682. Strain(s): 19, 21, 37, 48 DOI: 10.1093/oxfordjournals.pcp.a079302 Watanabe, A. & Yamamoto, Y. 1967 Heterotrophic nitrogen fixation by the blue-green alga Anabaenopsis circularis. Nature, 214, 738 Strain(s): 21 DOI: 10.1038/214738a0 Watanabe, A. 1960 List of algal strains in collection at the Institute of Applied Microbiology, University of Tokyo. J. Gen. Appl. Microbiol., 6, 283-292. Strain(s): 19, 21, 22, 23, 24, 25, 26, 28, 29, 37, 47, 49, 226, 227 |
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