Search Reference

Abd Karim, F. F., Mohamad, S. E., Shaza, E. M., Iwamoto, K. 2021 Initial study on the growth of Haematococus pluvialis for astaxanthin production. IOP Conf. Ser.: Earth Environ. Sci., 765, 012064 (article ID).
Strain(s): 144 
DOI: 10.1088/1755-1315/765/1/012064
Abe, J., Hirano, N., Komiya, A., Kanda, N., Fujiwara, A., Hori, S., Tsuchikane, Y., Sekimoto, H. 2016 Preparation of knockdown transformants of unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Bio-protocol, 6, e1813 (article ID).
Keywords: Knockdown; Alga; Closterium; Charophycean; Transformation
Strain(s): 6768 
DOI: 10.21769/BioProtoc.1813
Abe, J., Hiwatashi, Y., Ito, M., Hasebe, M., Sekimoto, H. 2008 Expression of exogenous genes under the control of endogenous HSP70 and CAB promoters in the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 49, 625-632.
Strain(s): 68 
PubMed: 18308758
DOI: 10.1093/pcp/pcn039
Abe, J., Hori, S., Sato, M., Sekimoto, H. 2016 Concanavalin A disrupts the release of fibrous material necessary for zygote formation of a unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Front. Plant Sci., 7, 1040 (article ID).
Keywords: charophycean; Closterium; conjugation; gamete; Concanavalin A (Con A); sexual reproduction
Strain(s): 6768 
PubMed: 27468295
DOI: 10.3389/fpls.2016.01040
Abe, J., Hori, S., Tsuchikane, Y., Kitao, N., Kato, M., Shiraiwa, H. 2011 Stable nuclear transformation of the Closterium peracerosum–strigosum–littorale complex. Plant Cell Physiol., 52, 1676-1685.
Strain(s): 6768 
PubMed: 21804095
DOI: 10.1093/pcp/pcr103
Abe, J., Kubo, T., Takagi, Y., Saito, T., Miura, K., Fukuzawa, H., Matsuda, Y. 2004 The transcriptional program of synchronous gametogenesis in Chlamydomonas reinhardtii. Curr. Genet., 46, 304-315.
Strain(s): 2235 
PubMed: 15459796
DOI: 10.1007/s00294-004-0526-4
Abe, M., Okuda, Y., Hashimoto, S. 2022 Effects of light intensity on the production of VSLs from the marine diatom Ditylum brightwellii. J. Atmos. Chem., 79, 1–16.
Keywords: Chloroform; Bromoform; Halogenated hydrocarbons; Ditylum; Phytoplankton; Light dependence
Strain(s): 350 
DOI: 10.1007/s10874-021-09426-9
Abe, T., Tsuzuki, M., Kaplan, A., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. II. Effect of sodium concentration during growth on the induction of active transport system for IC. Plant Cell Physiol., 28, 671-677.
Keywords: Anabaena variabilis; CO2 accumulation; cyanobacterial growth; photosynthesis; sodium
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077343
Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis in the cells of Anabaena grown under ordinary air. III. Some characteristics of the HCO3-transport system in cells grown under ordinary air. Plant Cell Physiol., 28, 867-874.
Keywords: Anabaena; carbonic anhydrase; IC transport; photosynthesis; sodium
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077368
Abe, T., Tsuzuki, M., Miyachi, S. 1987 Transport and fixation of inorganic carbon during photosynthesis of Anabaena grown under ordinary air. I. Active species of inorganic carbon utilized for photosynthesis. Plant Cell Physiol., 28, 273-281.
Keywords: Anabaena; carbon dioxide fixation; cyanobacterium; IC transport photosynthesis
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077293
Abeynayaka, HDL., Asaeda, T., Rashid, MH. 2018 Effects of elevated pressure on Pseudanabaena galeata Böcher in varying light and dark environments. Environ. Sci. Pollut. Res., 25, 21224–21232.
Keywords: Cyanobacteria; Hydrostatic pressure; Pseudanabaena galeata Böcher; Prolonged darkness; Chlorophyll-a; Cell concentration
Strain(s): 512 
PubMed: 29779078
DOI: 10.1007/s11356-018-2218-5
Abram, M., Białek, R., Szewczyk, S., Karolczak, J., Gibasiewicz, K., Kargul, J. 2020 Remodeling of excitation energy transfer in extremophilic red algal PSI-LHCI complex during light adaptation. Biochim. Biophys. Acta-Bioenerg., 1861, 148093 (article ID).
Keywords: Photosystem I; Light harvesting complex I; Time-resolved fluorescence; Extremophilic red alga Cyanidioschyzon merolae; Light adaptation; Red chlorophylls
Strain(s): 1332 
PubMed: 31669460
DOI: 10.1016/j.bbabio.2019.148093
Agarkova, I. V., Lane, L. C., Dunigan, D. D., Quispe, C. F., Duncan, G. A., Milrot, E., Minsky, A., Esmael, A., Ghosh, J. F., Van Etten, J. L. 2021 Identification of a chlorovirus PBCV-1 protein involved in degrading the host cell wall during virus infection. Viruses-Basel, 13, 782 (article ID).
Keywords: Chlorella; Phycodnaviridae; chlorovirus; PBCV-1; algal lytic activity; cell wall degrading activity; alginate-like lyase
Strain(s): 25402541 
PubMed: 33924931
DOI: 10.3390/v13050782
Águila, B., Alcántara-Hernández, R. J., Montejano, G., López-Martínez, R., Falcón, L. I., Becerra-Absalón, I. 2021 Cyanobacteria in microbialites of Alchichica Crater Lake: a polyphasic characterization. Eur. J. Phycol., , 428-443.
Keywords: Clone libraries; depth gradient; microscopy; NGS library; oxyphotobacteriav; stromatolites; taxonomy
Strain(s): 439343944395439643974398 
DOI: 10.1080/09670262.2020.1853815
Ahamefule, S. C., Ogbonna, J. C., Moneke, A. N., Ossai, N. I. 2018 Application of photosynthetic microalgae as efficient pH bio-stabilizers and bio-purifiers in sustainable aquaculture of Clarias gariepinus (African catfish) fry. Nig. J. Biotech., 35, 139-150.
Keywords: nitrogen removal; ammonia; nitrite; fishery; fish pond
Strain(s): 93 
DOI: 10.4314/njb.v35i2.17
Aida, T. M., Nonaka, T., Fukuda, S., Kujiraoka, H., Kumagai, Y., Maruta, R., Ota, M., Suzuki, I., Watanabe, M. M., Inomata, H., Smith Jr., R. L. 2016 Nutrient recovery from municipal sludge for microalgae cultivation with two-step hydrothermal liquefaction. Algal Res., 18, 61-68.
Keywords: Biosolid treatment process; High temperature water; Internal recycle; Wastewater treatment; Microalgae cultivation
Strain(s): 48 
DOI: 10.1016/j.algal.2016.06.009
Aikawa, S., Ho, S-H., Nakanishi, A., Chang, J-S., Hasunuma, T., Kondo, A. 2015 Improving polyglucan production in cyanobacteria and microalgae via cultivation design and metabolic engineering. Biotechnol. J., 10, 886-898.
Keywords: Bioethanol; Cyanobacteria; Metabolic engineering; Microalgae; Polyglucan
Strain(s): 39 
PubMed: 25867926
DOI: 10.1002/biot.201400344
Aikawa, S., Inokuma, K., Wakai, S., Sasaki, K., Ogino, C., Chang, J-S., Hasunuma, T., Kondo, A. 2018 Direct and highly productive conversion of cyanobacteria Arthrospira platensis to ethanol with CaCl2 addition. Biotechnol. Biofuels, 11, 50 (article ID).
Keywords: Ethanol conversion; Glycogen extraction; Cyanobacteria; Amylase-displaying yeast; Polysaccharide layer; Organic nutrient
Strain(s): 39 
PubMed: 29492105
DOI: 10.1186/s13068-018-1050-y
Aikawa, S., Izumi, Y., Matsuda, F., Hasunuma, T., Chang, J.-S., Kondo, A. 2012 Synergistic enhancement of glycogen production in Arthrospira platensis by optimization of light intensity and nitrate supply. Bioresour. Technol., 108, 211-215.
Keywords: Arthrospira platensis; Glycogen; Cyanobacteria; Light intensity; Nitrogen starvation
Strain(s): 39 
PubMed: 22277210
DOI: 10.1016/j.biortech.2012.01.004
Aikawa, S., Joseph, A., Yamada, R., Izumi, Y., Yamagishi, T., Matsuda, F., Kawai, H., Chang, J.-S., Hasunuma, T., Kondo, A. 2013 Direct conversion of Spirulina to ethanol without pretreatment or enzymatic hydrolysis processes. Energ. Environ. Sci., 6, 1844-1849.
Strain(s): 39 
DOI: 10.1039/C3EE40305J
Aizawa, K. & Miyachi, S. 1986 Carbonic anhydrase and CO2 concentrating mechanisms in microalgae and cyanobacteria. FEMS Microbiol. Lett., 39, 215-233.
Keywords: aquatic algae; cyanobacteria; photoautotrophs; photorespiration; photosynthesis; transport
Strain(s): 2093216021732235 
DOI: 10.1111/j.1574-6968.1986.tb01860.x
Aizawa, K., Nakamura, Y., Miyachi, S. 1985 Variation of phosphoenolpyruvate carboxylase activity in Dunaliella associated with changes in atmospheric CO2 concentration. Plant Cell Physiol., 26, 1199-1203.
Keywords: carbonic anhydrase; Dunaliella; phosphoenolpyruvate carboxylase; photosynthesis; Porphyridium
Strain(s): 2138 
DOI: 10.1093/oxfordjournals.pcp.a077016
Aizawa, K., Tsuzuki, M., Miyachi, S. 1986 Kinetic studies on fhe active species of inorganic carbon absorbed by the cells of Dunaliella tertiolecta. Plant Cell Physiol., 27, 37-47.
Keywords: bicarbonate utilization; carbon dioxide; carbonic anhydrase; cell surface; Dunaliella tertiolecta; photosynthesis
Strain(s): 2170 
Akao, S., Hosoi, Y., Fujiwara, T. 2014 Utilization of water chestnut for reclamation of water environment and control of cyanobacterial blooms. Environ. Sci. Pollut. Res., 21, 2249-2255.
Keywords: Nitrogen; Phosphorus; Phenolic compounds; Potassium; Trapa natans
Strain(s): 87 
PubMed: 24046225
DOI: 10.1007/s11356-013-2102-2
Akatsuka, S., Sekimoto, H., Iwai, H., Fukumoto, R., Fujii, T. 2003 Mucilage secretion regulated by sex pheromones in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 44, 1081-1087.
Keywords: Closterium; mucilage; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1093/pcp/pcg131
Akatsuka, S., Tsuchikane, Y., Fukumoto, R., Fujii, T., Sekimoto, H. 2006 Physiological characterization of the sex pheromone protoplast-release-inducing protein from the Closterium peracerosum-strigosum-littorale complex (Charophyta). Phycol. Res., 54, 116-121.
Keywords: Closterium; conjugation; mucilage; protoplast release; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1111/j.1440-1835.2006.00418.x
Akcaalan, R., Young, FM., Metcalf, JS., Morrison, LF., Albay, M., Codd, GA. 2006 Microcystin analysis in single filaments of Planktothrix spp. in laboratory cultures and environmental blooms. Water Res., 40, 1583-1590.
Keywords: Planktothrix rubescens; Planktothrix agardhii; Microcystin immunoassay; Single filaments; Cyanobacteria
Strain(s): 595 
DOI: 10.1016/j.watres.2006.02.020
Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2020 Anaerobic digestion effluent treatment using microalgae and nitrifiers in an outdoor raceway pond with fluidized carriers. Water Sci. Technol., 82, 1081–1091.
Keywords: high-ammonia-containing wastewater; immobilization; light-stress; microalgal-bacterial consortia; nitrification; photo-oxygenation
Strain(s): 2173 
DOI: 10.2166/wst.2020.226
Akizuki, S., Cuevas-Rodríguez, G., Toda, T. 2021 Nitrification of anaerobic digestate using a consortium of microalgae and nitrifiers in an open photobioreactor with moving bed carriers. Chemosphere, 263, 127948 (article ID).
Keywords: Bacterial immobilization; light attenuation; light stress; high-ammonia wastewater; photo-oxygenation
Strain(s): 2173 
PubMed: 33297018
DOI: 10.1016/j.chemosphere.2020.127948
Akizuki, S., Kishi, M., Cuevas-Rodríguez, G., Toda, T. 2020 Effects of different light conditions on ammonium removal in a consortium of microalgae and partial nitrifying granules. Water Res., 171, 115445 (article ID).
Keywords: Energy-saving process; Photo-oxygenation; Short-cut nitrogen removal; Ammonium removal pathway; Empirical model
Strain(s): 2173 
PubMed: 31954203
DOI: 10.1016/j.watres.2019.115445
Aktas, T. S., Fujibayashi, M., Takeda, F., Maruo, C., Nishimura, O. 2014 The role of rapid mixing condition on picophytoplankton floc growth. Desalin. Water Treat., 52, 1404-1413.
Keywords: Velocity gradient; Rapid mixing time; Picophytoplankton; Floc formation and breakage; Turbidity removal
Strain(s): 1348 
DOI: 10.1080/19443994.2013.787951
Aktas, T. S., Takeda, F., Maruo, C., Chiba, N., Nishimura, O. 2012 A comparison of zeta potentials and coagulation behaviors of cyanobacteria amd algae. Desalin. Water Treat., 48, 294-301.
Keywords: Zeta potential; Coagulation; Turbidity; Cyanobacteria; algae
Strain(s): 8713482170 
DOI: 10.1080/19443994.2012.698828
Alamsjah, M. A., Hirao, S., Ishibashi, F., Fujita , Y. 2005 Isolation and structure determination of algicidal compounds from Ulva fasciata. Biosci. Biotechnol. Biochem., 69, 2186-2192.
Keywords: algicidal compounds; Ulva fasciata; hexadeca-4,7,10,13-tetraenoic acid; octadeca-6,9,12,15-tetraenoic acid; α-linolenic acid
Strain(s): 15462 
PubMed: 16306701
DOI: 10.1271/bbb.69.2186
Alamsjah, M. A., Hirao, S., Ishibashi, F., Oda, T., Fujita, Y. 2008 Algicidal activity of polyunsaturated fatty acids derived from Ulva fasciata and U. pertusa (Ulvaceae, Chlorophyta) on phytoplankton. J. Appl. Phycol., 20, 713-720.
Keywords: Algicidal compound; Red tide phytoplankton; Ulva fasciata; Ulva pertusa
Strain(s): 137221251252254359381462486 
DOI: 10.1007/s10811-007-9257-5
Alamsjah, M. A., Ishibe, K., Kim, D., Yamaguchi, K., Ishibashi, F., Fujita, Y., Oda, T. 2007 Selective toxic effects of polyunsaturated fatty acids derived from Ulva fasciata on red tide phytoplankter species. Biosci. Biotechnol. Biochem., 71, 265-268.
Keywords: α-linolenic acid; linoleic acid; Ulva fasciata; red tide phytoplankter
Strain(s): 3 
PubMed: 17213644
DOI: 10.1271/bbb.60475
Al-Azab, A. J. S., Widyaningrum, D., Hirakawa, H., Hayashi, Y., Tanaka, S., Ohama, T. 2021 A resin cyanoacrylate nanoparticle as an acute cell death inducer to broad spectrum of microalgae. Algal Res., 54, 102191 (article ID).
Keywords: Cell death; Coccolith; Non-green algae; ROS; Poly (isobutylcyanoacrylate) nanoparticles
Strain(s): 1571527433153459061569971290010171308131027642778 
DOI: 10.1016/j.algal.2021.102191
Alcorta, J., Vergara-Barros, P., Antonaru, L. A., Alcamán-Arias, M. E., Nürnberg, D. J., Díez, B. 2019 Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in cyanobacteria. Extremophiles, 23, 635–647.
Keywords: Fischerella: Mastigocladus: Distribution: Thermophile: Nitrogen fxation: Photosynthesis: Multicellularity: Hot springs
Strain(s): 59237544106 
PubMed: 31512055
DOI: 10.1007/s00792-019-01125-4
Alghanimy, D. B. G. & Alghanmi, H. A. 2021 Effect of different magnesium oxide nanoparticles concentration on the growth of the Lyngbya majuscula. Eco. Env. & Cons., 27, 690-694.
Keywords: Nanoparticles; MgO NPs; Lyngbya majuscula; Chlorophyll a; Carotenoids
Strain(s): 46 
Allen, M. B. 1959 Studies with Cyanidium caldarium, an anomalously pigmented chlorophyte. Arch. Mikrobiol., 32, 270-277.
Strain(s): 298 
DOI: 10.1007/BF00409348
Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017 Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species. Algal Res., 21, 191-202.
Keywords: Astaxanthin productivity; Haematococcus pluvialis; Haematococcus rubicundus; Functional traits; Common-garden experiment; Intraspecific variation
Strain(s): 144 
DOI: 10.1016/j.algal.2016.10.021
Almeida, A. V. M., Vaz, M. G. M. V., de Castro, N. V., Genuário, D. B., Oder, J. C., de Souza, P. A. M., Martins, S. B., Machado, M., Nunes-Nesi, A., Araújo, W. L. 2023 How diverse a genus can be: An integrated multi-layered analysis into Desmonostoc (Nostocaceae, Cyanobacteriota). Syst. Appl. Microbiol., 46, 126422 (article ID).
Keywords: Diversity; Growth; Metabolism; Nif genes; Physiology; Phylogeny
Strain(s): 252820942107 
PubMed: 37119668
DOI: 10.1016/j.syapm.2023.126422
Altenburger, R., Schmitt-Jansen, M., Riedl, J. 2008 Bioassays with unicellular algae: deviations from exponential growth and its implications for toxicity test results. J. Environ. Qual., 37, 16-21.
Strain(s): 4282 
PubMed: 18178874
DOI: 10.2134/jeq2006.0556
Alvarenga, D. O., Andreote, A. P. D., Branco, L. H. Z., Delbaje, E., Cruz, R. B., Varani, A. D., Fiore, M. F. 2021 Amazonocrinis nigriterrae gen. nov., sp. nov., Atlanticothrix silvestris gen. nov., sp. nov. and Dendronalium phyllosphericum gen. nov., sp. nov., nostocacean cyanobacteria from Brazilian environments. Int. J. Syst. Evol. Microbiol., 71, 004811 (article ID).
Keywords: Nostocaceae; phyllosphere; anthropogenic dark earth; nitrogen fixation; phylogenomics
Strain(s): 4103 
PubMed: 34032563
DOI: 10.1099/ijsem.0.004811
Anam, K., Rahman, D. Y., Hidhayati, N., Rachmayati, R., Susilaningsih, D., Agustini, N. W. S., Praharyawan, S., Susanti, H., Apriastini, M. 2021 Lipid accumulation on optimized condition through biomass production in green algae. IOP Conf. Ser.: Earth Environ. Sci., 762, 012075 (article ID).
Strain(s): 215221692170 
DOI: 10.1088/1755-1315/762/1/012075
Anas, A. R. J., Nakajima, A., Naruse, C., Tone, M., Asukabe, H., Harada, K. 2016 Determination of fVIIa-sTF inhibitors in toxic Microcystis cyanobacteria by LC-MS technique. Mar. Drugs, 14, 7 (article ID).
Keywords: cyanobacteria; toxic Microcystis; anticoagulant; fVIIa-sTF inhibitors; peptides; aeruginosins; blood coagulation cascade
Strain(s): 891021031072981025104310581071108510991133 
PubMed: 26729138
DOI: 10.3390/md14010007
Andemichael, H., Lee, J. W. 2016 Toxicological study of biofuel ethanol with blue green alga Spirulina platensis. Algal Res., 18, 110-115.
Keywords: Spirulina platensis; Biofuel ethanol; Cyanobacteria; Ethanol tolerance bioassay; Biofuel ethanol toxicological effect
Strain(s): 39 
DOI: 10.1016/j.algal.2016.05.032
Ando, D., Fujisawa, T., Katagi, T. 2017 Fate of flumioxazin in aquatic plants: Two algae (Pseudokirchneriella subcapitata, Synechococcus sp.), duckweed (Lemna sp.), and water milfoil (Myriophyllum elatinoides). J. Agric. Food Chem., 65, 8813-8822.
Keywords: aquatic plants; conjugation; flumioxazin; metabolism; sediment exposure; water exposure
Strain(s): 35937 
PubMed: 28920683
DOI: 10.1021/acs.jafc.7b03355
Ando, T., Nagase, H., Eguchi, K., Hirooka, T., Nakamura, T., Miyamoto, K., Hirata, K. 2007 A novel method using cyanobacteria for ecotoxicity test of veterinary antimicrobial agents. Environ. Toxicol. Chem., 26, 601-606.
Keywords: Antimicrobial agent; Cyanobacterium; Ecotoxicity test; Algal toxicity
Strain(s): 1923441073277 
PubMed: 17447543
DOI: 10.1897/06-195R.1
Ando, T., Otsuka, S., Nishiyama, M., Sendo, K., Watanabe, M. M., Matsumoto, S. 2003 Toxic effects of dichloromethane and trichloroethlene on the growth of planktonic green algae, Chlorella vulgaris NIES227, Selenastrum capricornutum NIES35, and Volvulina steinii NIES545. Microbes Environ., 18, 43-46.
Keywords: algal growth potential (AGP); bioindicator; dichloromethane; organic solvents; trichloroethlene
Strain(s): 35227545 
DOI: 10.1264/jsme2.18.43
Annoura, T., Nara, T., Makiuchi, T., Hashimoto, T., Aoki, T. 2005 The origin of dihydroorotate dehydrogenase genes of kinetoplastids, with special reference to their biological significance and adaptation to anaerobic, parasitic conditions. J. Mol. Evol., 60, 113-127.
Keywords: Dihydroorotate dehydrogenase; Trypanosoma cruzi Bodonid; Kinetoplastid; Euglenozoa; Phylogenetic tree; Gene fusion; Horizontal gene transfer; Anaerobiosis
Strain(s): 48 
PubMed: 15696374
DOI: 10.1007/s00239-004-0078-8
Antonaru, L. A., Cardona, T., Larkum, A. W. D., Nürnberg, D. J. 2020 Global distribution of a chlorophyll f cyanobacterial marker. ISME J., 14, 2275–2287.
Strain(s): 2675933974 
PubMed: 32457503
DOI: 10.1038/s41396-020-0670-y
Antonaru, L. A., Nurnberg, D. J. 2017 Role of PatS and cell type on the heterocyst spacing pattern in a filamentous branching cyanobacterium. FEMS Mircobiol. Lett., 364 fnx154 (article ID).
Keywords: multicellularity; cyanobacteria; Stigonematales; cell differentiation; nitrogen fixation; heterocyst spacing pattern; PatS
Strain(s): 59237543756 
PubMed: 28859320
DOI: 10.1093/femsle/fnx154
Antoshvili, M. Caspy, I., Hippler, M., Nelson, N. 2019 Structure and function of photosystem I in Cyanidioschyzon merolae. Photosynth. Res., 139, 499-508.
Keywords: Photosynthesis; Photosystem I; Crystal structure; Synechocystis; Cyanobacteria; Membrane complexes
Strain(s): 1084 
PubMed: 29582227
DOI: 10.1007/s11120-018-0501-4
Aoi, J., Sasaki, D., Asayama, M. 2021 Development of a method for phycocyanin recovery from filamentous cyanobacteria and evaluation of its stability and antioxidant capacity. BMC Biotechnol., 21, 40 (article ID).
Keywords: Antioxidant; Arthrospira platensis; Cell lysis; Limnothrix sp., Phycocyanin; Pseudanabaena sp.
Strain(s): 39 
PubMed: 34134665
DOI: 10.1186/s12896-021-00692-9
Aoki, S. & Miyachi, S. 1964 Chromatographic analysis of acid-soluble polyphosphates in Chlorella cells. Plant Cell Physiol., 5, 241-250.
Strain(s): 2170 
Aoki, S., Ohara, S., Kimura, K., Mizuguchi, H., Fuse, Y., Yamada, E. 2008 Characterization of dissolved organic matter released from Microcystis aeruginosa. Anal. Sci., 24, 389-394.
Strain(s): 109 
PubMed: 18332548
DOI: 10.2116/analsci.24.389
Aoki, S., Ohara, S., Kimura, K., Mizuguchi, H., Fuse, Y., Yamada, E. 2008 Characterization of fluorophores released from three kinds of lake phytoplankton using gel chromatography and fluorescence spectrophotometry. Anal. Sci., 24, 1461-1467.
Strain(s): 109275665 
PubMed: 18997376
DOI: 10.2116/analsci.24.1461
Aoshima, J., Kubota, M., Nishimura, T., Iwamura, T. 1984 DNA polymerases of Chlorella. II. Characterization to distinguish the two enzymes. J. Biochem., 96, 461-473.
Strain(s): 2170 
Aoshima, J., Nishimura, T., Iwamura, T. 1982 DNA polymerases of Chlorella. I. Chloroplastic and nuclear DNA polymerases in synchronized algal cells. Cell Struct. Funct., 7, 327-340.
Strain(s): 2170 
Aoyama, K., Iwahori, K., Miyata, N. 2003 Application of Euglena gracilis cells to comet assay: evaluation of DNA damage and repair. Mutat. Res. Genet. Toxicol. Environ. , 538, 155-162.
Keywords: Comet assay; Single-cell gel electrophoresis; Euglena gracilis; DNA damage; DNA repair
Strain(s): 49 
DOI: 10.1016/S1383-5718(03)00113-X
Aoyama, K., Miyata, N., Iwahori, K. 2005 Evalution of DNA damaging potential in landfill leachates by comet assay using Euglena gracilis. Jpn. J. Water Treat. Biol., 41, 73-81.
Keywords: comet assay; Euglena gracilis; landfill leachate; umu test
Strain(s): 49 
DOI: 10.2521/jswtb.41.73
Aoyama, K., Uemura, I., Miyake, J., Asada, Y. 1997 Fermentative metabolism to produce hydrogen gas and organic compounds in a cyanobacterium, Spirulina platensis. J. Ferment. Bioeng., 83, 17-20.
Keywords: Spirulina; hydrogen; organic acid; ethanol
Strain(s): 46 
DOI: 10.1016/S0922-338X(97)87320-5
Arai, S., Takahashi, H. , Takano, H. , Sakai, A., Kawano, S. 1998 Isolation, characterization, and chromosome mapping of an actin gene from the primitive green alga, Nannochloris bacillaris (Chlorophyceae). J. Phycol., 34, 477–485.
Keywords: actin gene; actin localization; cell division; karyotype; Nannochloris bacillaris
Strain(s): 4016 
PubMed: 8575024
DOI: 10.1046/j.1529-8817.1998.340477.x
Araie, H., Nakamura, H., Toney, J. L., Haigg, H. A., Plancq, J., Shiratori, T., Leavitt, P. R., Seki, O., Ishida, K-I., Sawada, K., Suzuki, I., Shiraiwa, Y. 2018 Novel alkenone-producing strains of genus Isochrysis (Haptophyta) isolated from Canadian saline lakes show temperature sensitivity of alkenones and alkenoates. Org. Geochem., 121, 89-103.
Keywords: Alkenones; Alkenone unsaturation index; Canadian salt lakes; Chemotaxonomy; Haptophytes; Isochrysis; Long-chain alkyl ketones; Paleothermometer; UK37
Strain(s): 43314332433343344335 
DOI: 10.1016/j.orggeochem.2018.04.008
Araie, H., Sakamoto, K., Suzuki, I., Shiraiwa, Y. 2011 Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta). Plant Cell Physiol., 52, 1204-1210.
Strain(s): 837 
PubMed: 21632656
DOI: 10.1093/pcp/pcr070
Arakaki, Y., Fujiwara, T., Kawai-Toyooka, H., Kawafune, K., Featherston, J., Durand, P. M., Miyagishima, S., Nozaki, H. 2017 Evolution of cytokinesis-related protein localization during the emergence of multicellularity in volvocine green algae. BMC Evol. Biol., 17, 243 (article ID).
Keywords: Multicellularity; Volvocine algae; Tetrabaena socialis; DRP1
Strain(s): 5714121 
PubMed: 29212441
DOI: 10.1186/s12862-017-1091-z
Arakaki, Y., Kawai-Toyooka, H., Hamamura, Y., Higashiyama, T., Noga, A., Hirono, M., Olson, B. J. S. C., Nozaki, H. 2013 The simplest integrated multicellular organism unveiled. PLoS One, 8, e81641 (article ID).
Strain(s): 571 
PubMed: 24349103
DOI: 10.1371/journal.pone.0081641
Archibald, P. A. 1975 Trebouxia de Pulmaly (Chlorophyceae, Chlorococcales) and Pseudotrebouxia gen. nov. (Chlorophyceae, Chlorosarcinales). Phycologia, 14, 125-137.
Strain(s): 21832185218621872188 
DOI: 10.2216/i0031-8884-14-3-125.1
Arii, S., Yamashita, R., Tsuji, K., Tomita, K., Hasegawa, M., Bober, B., Harada, K. 2021 Differences in susceptibility of cyanobacteria species to lytic volatile organic compounds and influence on seasonal succession. Chemosphere, 284, 131378 (article ID).
Keywords: Susceptibility; Volatile organic compounds (VOCs); β-Cyclocitral; Minimal inhibitory concentration (MIC); Seasonal succession
Strain(s): 10211229880884316421652167716961728 
PubMed: 34217930
DOI: 10.1016/j.chemosphere.2021.131378
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Kinoshita, E., Suzaki, T. 2002 Ca2+-dependent cytoplasmic contractility of the heliozoan Actinophrys sol. Eur. J. Protistol., 38, 365-372.
Keywords: Cell model; Permeabilization; Contractile tubules; Heliozoa; Protozoa
Strain(s): 2497 
DOI: 10.1078/0932-4739-00879
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2005 Ca2+-dependent nuclear contraction of heliozoan Actinophrys sol. Cell Calcium, 38, 447-455.
Strain(s): 2497 
PubMed: 16099499
DOI: 10.1016/j.ceca.2005.06.034
Arikawa, M., Saito, A., Omura, G., Khan, S. M. M. K., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Ca2+-dependent in vivo contractility of a precipitate isolated from an extract of the heliozoan Actinophrys sol. Cell Motil. Cytoskeleton, 63, 57-65.
Keywords: contraction; precipitate; heliozoan; protozoa
Strain(s): 2497 
PubMed: 16362955
DOI: 10.1002/cm.20106
Arima, H., Horiguchi, N., Takaichi, S., Kofuji, R., Ishida, K-I., Wada, K., Sakamoto, T. 2012 Molecular genetic and chemotaxonomic characterization of the terrestrial cyanobacterium Nostoc commune and its neighboring species. FEMS Microbiol. Ecol., 79, 34-45.
Keywords: Anhydrobiosis; carotenoid; ferredoxin-NADP; oxidoreductase; nitrate/nitrite transporter; random amplified polymorphic DNA; water stress protein
Strain(s): 24282107210825382539 
PubMed: 22066798
DOI: 10.1111/j.1574-6941.2011.01195.x
Arsın, S., Delbaje, E., Jokela, J., Wahlsten, M., Farrar, Z. M., Permi, P., Fewer, D. 2023 A plastic biosynthetic pathway for the production of structurally distinct microbial sunscreens. ACS Chem. Biol., 18, 1959–1967.
Strain(s): 257326721002107210921112130375537563757397440734102410341054106 
PubMed: 37603862
DOI: 10.1021/acschembio.3c00112
Aruga, Y. 1965 Ecological studies of photo-synthesis and matter production of phytoplankton II. Photosynthesis of algae in relation to light intensity and temperature. Bot. Mag. Tokyo, 78, 360-365.
Strain(s): 19 
Asada, C., Doi, K., Sasaki, C., Nakamura, Y. 2012 Efficient extraction of starch from microalgae using ultrasonic homogenizer and its conversion into ethanol by simultaneous saccharification and fermentation. Natural Resources, 3, 175-179
Keywords: Bioethanol; Microalgae; Ultrasonic Treatment; Homoginizer; Starch
Strain(s): 437 
DOI: 10.4236/nr.2012.34023
Asada, Y. & Kawamura, S. 1986 Screening for cyanobacteria that evolve molecular hydrogen under dark and anaerobic conditions. J. Ferment. Technol., 64, 553-556.
Strain(s): 19212336394621193277 
DOI: 10.1016/0385-6380(86)90081-6
Asada, Y., Kawamura, S., Ho, K.-K. 1987 Hydrogenase from the unicellular cyano-bacterium, Microcystis aeruginosa. Phytochemistry, 26, 637-640.
Keywords: Microcystis aeruginosa; cyanobacterium; hydrogenase; purification; properties
Strain(s): 44 
DOI: 10.1016/S0031-9422(00)84756-1
Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1998 Chemiluminescence flow-injection system for rapid detection of red tide phytoplankton, Chattonella antiqua. Anal. Lett., 31, 2279-2288.
Keywords: chemiluminescence; flow injection; superoxide; luciferin analogue; red tide
Strain(s): 113 
DOI: 10.1080/00032719808005302
Asai, R., Matsukawa, R., Ikebukuro, K., Karube, I. 1999 Highly sensitive chemiluminescence flow-injection detection of the red tide phytoplankton Heterosigma carterae. Anal. Chim. Acta, 390, 237-244.
Keywords: Chemiluminescence; Flow injection analysis; Red tide phytoplankton; Superoxide; Hydrogen peroxide; Heterosigma carterae
Strain(s): 6586 
DOI: 10.1016/S0003-2670(99)00145-2
Asai, R., Ootani, K., Nomura, Y., Nakamura, C., Ikebukuro, K., Arikawa, Y., Miyake, J., Karube, I. 2003 PCR-based ribosomal DNA detection technique for microalga (Heterosigma carterae) causing red tide and its application to a biosensor using labeled probe. Mar. Biotechnol., 5, 417-423.
Keywords: small subunit rDNA; Heterosigma carterae; fluorescence polarization; asymmetric polymerase chain reaction; surface plasmon resonance
Strain(s): 144 
PubMed: 14730424
DOI: 10.1007/s10126-002-0081-2
Asamizu, E., Miura, K., Kucho, K., Inoue, Y., Fukuzawa, H., Ohyama, K., Nakamura, Y., Tabata, S. 2000 Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii. DNA Res., 7, 305-307.
Keywords: Chlamydomonas reinhardtii; cDNA; EST; CO2 stress
Strain(s): 2235 
PubMed: 11089912
DOI: 10.1093/dnares/7.5.305
Asamizu, E., Nakamura, Y., Miura, K., Fukuzawa, H., Fujiwara, S., Hirono, M., Iwamoto, K., Matsuda, Y., Minagawa, J., Shimogawara, K., Takahashi, Y., Tabata, S. 2004 Establishment of publicly available cDNA material and information resource of Chlamydomonas reinhardtii (Chlorophyta), to facilitate gene function analysis. Phycologia, 43, 722-726.
Strain(s): 2235 
DOI: 10.2216/i0031-8884-43-6-722.1
Asamizu, E., Nakamura, Y., Sato, S., Fukuzawa, H., Tabata, S. 1999 A large scale structure analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags. DNA Res., 6, 369-373.
Keywords: green alga; Chlamydomonas reinhardtii; cDNA; EST; normalized library; similarity search
Strain(s): 2235 
PubMed: 10691129
DOI: 10.1093/dnares/6.6.369
Aso, M., Matsumae, R., Tanaka, A., Tanaka, R., Takabayashi, A. 2021 Unique peripheral antennas in the photosystems of the streptophyte alga Mesostigma viride. Plant Cell Physiol., 62, 436–446.
Keywords: Green algae; Iso-seq; Mesostigma viride; Native-PAGE; Photosystem
Strain(s): 296 
PubMed: 33416834
DOI: 10.1093/pcp/pcaa172
Asukabe, H., Akahori, S., Ueno, E., Nakayama, T., Yamashita, R., Arii, S., Harada, K., Imanishi, S. Y. 2020 Cyanobacterial classification with the toxicity using MALDI Biotyper. J. Am. Soc. Mass Spectrom., 31, 1572-1578.
Keywords: cyanobacteria; MALDI Biotyper; microcystins; profiling
Strain(s): 27394273818789100101102103104105107111112207208230266298416433478510512515592593604611808809835843846847905928931932945981989102510431058106110641068106910711076108510991101110511131115112611331134113511441157121516421643165216681672167316771678169820872131241226653708373337343736375537563757 
PubMed: 32501712
DOI: 10.1021/jasms.0c00148
Azaman, S. N. A., Wong, D. C. J., Tan, S. W., Yusoff, F. M., Nagao, N., Yeap, S. K. 2020 De novo transcriptome analysis of Chlorella sorokiniana: effect of glucose assimilation, and moderate light intensity. Sci Rep, 10, 17331 (article ID).
Strain(s): 2168 
PubMed: 33060668
DOI: 10.1038/s41598-020-74410-4
Azizi, M., Moteshafi, H., Hashemi, M. 2020 A novel CO2 steady feeding based on the pH steady strategy data in the Haematococcus pluvialis cultivation to maximize the cell growth and carbon bio-sequestration. Bioresour. Technol., 314, 123752 (article ID).
Keywords: Haematococcus pluvialis; CO2 feeding; Productivity; CO2 bio-fixation; RuBisCO activity
Strain(s): 144 
PubMed: 32629377
DOI: 10.1016/j.biortech.2020.123752
Azizi, M., Moteshafi, H., Hashemi, M. 2020 Distinctive nutrient designs using statistical approach coupled with light feeding strategy to improve the Haematococcus pluvialis growth performance and astaxanthin accumulation. Bioresour. Technol., 300, 122594 (article ID).
Keywords: H. pluvialis; Astaxanthin; Nutrients designing; Optimization; Light-feeding strategy
Strain(s): 144 
PubMed: 31901774
DOI: 10.1016/j.biortech.2019.122594
Azuma, T., Pánek, T., Tice, A. K., Kayama, M., Kobayashi, M., Miyashita, H., Suzaki, T., Yabuki, A., Brown, M. W., Kamikawa, R. 2022 An enigmatic stramenopile sheds light on early evolution in Ochrophyta plastid organellogenesis. Mol. Biol. Evol., 39, msac065 (article ID).
Keywords: Actinophryidae; plastid evolution; aminoacyl-tRNA synthase; gene transfer; phylogenomics; organellar DNA
Strain(s): 24973374 
PubMed: 35348760
DOI: 10.1093/molbev/msac065
Bae, E. H., Kang, J.-H., Park, C.-S. 2020 New report on cyanophyte in Korea, Microseira wollei (Farlow ex Gomont) G.B.McGregor and Sendall ex Kennis (Oscillatoriaceae). Journal of Species Research, 9, 210-217.
Keywords: 16S rRNA; Microseira wollei; morphology; unrecorded
Strain(s): 4236 
DOI: 10.12651/JSR.2020.9.3.210
Baker, J. A., Entsch, B., McKay, D. B. 2003 The cyanobiont in an Azolla fern is neither Anabaena nor Nostoc. FEMS Mircobiol. Lett., 229, 43-47.
Keywords: Azolla fern; Cyanobacterial symbiont; Phylogenetic relationship
Strain(s): 4080 
PubMed: 14659541
DOI: 10.1016/S0378-1097(03)00784-5
Baldia, S. F., Fukami, K., Nishijima, T., Hata, T. 1995 Growth responses of Spirulina platensis to some physico-chemical factors and the kinetics of phosphorus utilization. Fish. Sci., 61, 331-335.
Keywords: Spirulina platensis; growth kinetics; physico-chemical factors; organic phosphorus; waste water
Strain(s): 46 
DOI: 10.2331/fishsci.61.331
Baldia, S. F., Nishijima, T., Fukami, K., Hata, Y. 1994 Studies on the chemical composition of a cyanophyte, Spirulina platensis. In The Third Asian Fisheries Forum, Eds. by Chou, L. M., et al., Asian Fisheries Society, Manila, Philippines, 1994, pp. 940-943.
Strain(s): 46 
Balloo, N., Mehjabin, J. J., Phan, C.-S., Okino, T. 2023 Heat shock and iron limitation modulate the metabolic profile of the cyanobacterium Microcystis aeruginosa NIES-88. Phycol. Res., 71, 200-208.
Strain(s): 88 
DOI: 10.1111/pre.12529
Ban, H., Sato, S., Yoshikawa, S., Yamada, K., Nakamura, Y., Ichinomiya, M., Sato, N., Blanc-Mathieu, R., Endo, H., Kuwata, A., Ogata, H. 2023 Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Commun. Biol., 6, 697 (article ID).
Strain(s): 2565369937003701 
PubMed: 37420035
DOI: 10.1038/s42003-023-05002-x
Ban, S. 1992 Effects of photoperiod, temperature, and population density on induction of diapause egg production in Eurytemora affinis (Copepoda: Calanoida) in Lake Ohnuma, Hokkaido, Japan. J. Crustacean Biol., 12, 361-367.
Keywords: Eggs; Diapause; Female animals; Photoperiod; Nauplii; Egg production; Lakes; Population density; Autumn; Animals
Strain(s): 2822235 
DOI: 10.2307/1549029
Ban, S. 1994 Effect of temperature and food concentration on post-embryonic development, egg production and adult body size of calanoid copepod Eurytemora affinis. J. Plankton Res., 16, 721-735.
Strain(s): 282 
DOI: 10.1093/plankt/16.6.721
Ban, S. & Minoda, T. 1994 Induction of diapause egg production in Eurytemora affinis by their own metabolites. Hydrobiologia, 292/293, 185-189.
Keywords: crowding effect; metabolites; diapause induction; Eurytemora affinis
Strain(s): 282 
DOI: 10.1007/978-94-017-1347-4_25
Baqué, M., Napoli, A., Fagliarone, C., Moeller, R., de Vera, J. P., Billi, D. 2020 Carotenoid raman signatures are better preserved in dried cells of the desert cyanobacterium Chroococcidiopsis than in hydrated counterparts after high-dose gamma irradiation. Life-Basel, 10, 83 (article ID).
Keywords: biosignatures; extremophiles; ionizing radiation; Raman spectroscopy; cyanobacteria; Mars exploration
Strain(s): 252100407341034105 
PubMed: 32521820
DOI: 10.3390/life10060083
Barbier, G., Oesterhelt, C., Larson, M. D., Halgren, R. H., Wilkerson, C., Garavito, R. M., Benning, C., Weber, A. P. M. 2005 Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae. Plant Physiol., 137, 460-474.
Strain(s): 3638 
PubMed: 15710685
DOI: 10.1104/pp.104.051169
Barcytė, D., Eikrem, W., Engesmo, A., Seoane, S., Wohlmann, J., Horák, A., Yurchenko, T., Eliáš, M. 2021 Olisthodiscus represents a new class of Ochrophyta. J. Phycol., 57, 1094-1118.
Strain(s): 15 
PubMed: 33655496
DOI: 10.1111/jpy.13155
Barcytė, D., Pusztai, M., Škaloud, P., Eliáš, M. 2022 When you like other algae: Adglutina synurophila gen. et sp. nov. (Moewusinia, Chlorophyceae), a clingy green microalga associated with Synura colonies. Protist, 173, 125858 (article ID).
Keywords: Diversity; epibionts; green algae; taxonomy; Volvocales
Strain(s): 22252499 
PubMed: 35220204
DOI: 10.1016/j.protis.2022.125858
Baresova, M., Pivokonsky, M., Novotna, K., Naceradska, J., Branyik, T. 2017 An application of cellular organic matter to coagulation of cyanobacterial cells (Merismopedia tenuissima). Water Res., 122, 70-77.
Keywords: Algal cellular organic matter; Coagulation; Cyanobacterial cells; Merismopedia tenuissima; Water treatment
Strain(s): 230 
PubMed: 28591663
DOI: 10.1016/j.watres.2017.05.070
Bass, D., Howe, A. T., Mylnikov, A. P., Vickerman, K., Chao, E. E., Smallbone, J. E., Snell, J., Cabral Jr., C., Cavalier-Smith, T. 2009 Phylogeny and classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.. Protist, 160, 483-521.
Keywords: Cercomonas; Eocercomonas; Paracercomonas; Cavernomonas; 18S rDNA phylogeny; Agitata
Strain(s): 243424352436243724382439244024412442244324442445244924502451245224532454 
PubMed: 19589724
DOI: 10.1016/j.protis.2009.01.004
Batista, A. M. M., Woodhouse, J. N., Grossart, H.-P., Giani, A. 2019 Methanogenic archaea associated to Microcystis sp. in field samples and in culture. Hydrobiologia, 831, 1–4.
Keywords: Cyanobacteria; Methanogenic archaea; Bacterial community composition; Microcystis sp.; Tropical reservoir
Strain(s): 1011021114 
DOI: 10.1007/s10750-018-3655-3
Becker, B. & Melkonian, M. 1991 2-keto-sugar acids in green flagellates: A chemical marker for prasinophycean scales. J. Phycol., 27, 498-504.
Keywords: cell wall composition; Chlorophyta; 2-keto-sugar acids; Prasinophyceae; scale composition
Strain(s): 2253 
DOI: 10.1111/j.0022-3646.1991.00498.x
Belmans, D. & Laere, A. V. 1988 Effect of ionophores on the ATP-pool and glycerol content in cells of the halotolerant green alga Dunaliella tertiolecta. J. Gen. Microbiol., 134, 2261-2268.
Strain(s): 2258 
DOI: 10.1099/00221287-134-8-2261
Beltran, E. C., Neilan, B. 2000 Geographical segregation of the neurotoxin-producing cyanobacterium Anabaena circinalis. Appl. Environ. Microbiol., 66, 4468-4474.
Strain(s): 192123404180 
PubMed: 11010900
DOI: 10.1128/AEM.66.10.4468-4474.2000
Bendif, E. M., Probert, I., Carmichael, M., Romac, S., Hagino, K., de Vardas, C. 2014 Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huzleyi and Gephyrocapsa. J. Phycol., 50, 140-148.
Keywords: coccolithophore; DNA barcoding; Emiliania huxleyi; Gephyrocapsa oceanica; phylogeny; species complex
Strain(s): 10002697 
PubMed: 26988015
DOI: 10.1111/jpy.12147
Beneragama, C. K., Chamara, R. M. S. R., Kumara, G. D. K., Goto, K. 2019 Intraspecific plasticity in circadian rhythms within Euglena gracilis Int. J. Appl. Sci. Biotechnol., 7, 207-216.
Keywords: Euglena gracilis; Circadian rhythms; Intraspecific Plasticity
Strain(s): 48 
DOI: 10.3126/ijasbt.v7i2.24278
Benico, G., Takahashi, K., Lum, W. M., Iwataki, M. 2019 Morphological variation, ultrastructure, pigment composition and phylogeny of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae, Dinophyceae). Phycologia, 58, 405-418.
Keywords: 19′-Hexanoyloxyfucoxanthin; Apical structure complex (ASC); Brachidinium; Chloroplast; Karenia; Karlodinium; Pyrenoid; Takayama
Strain(s): 4329 
DOI: 10.1080/00318884.2019.1601948
Benke, P. I., Vinay Kumar, M. C. S., Pan, D., Swarup, S. 2015 A mass spectrometry-based unique fragment approach for the identification of microcystins. Analyst, 140, 1198-1206.
Strain(s): 843 
PubMed: 25525642
DOI: 10.1039/c4an01702a
Berge, T., Daugbjerg, N., Hansen, P. J. 2012 Isolation and cultivation of microalgae select for low growth rate and tolerance to high pH. Harmful Algae, 20, 101-110.
Keywords: Culture; Growth rates; Harmful algal blooms; Heterocapsa triquetra; Interspecific variation; Laboratory selection; pH; Phytoplankton; Species; Strains
Strain(s): 7235 
DOI: 10.1016/j.hal.2012.08.006
Berney, C., Geisen, S., Van Wichelen, J., Nitsche, F., Vanormelingen, P., Bonkowski, M., Bass, D. 2015 Expansion of the 'reticulosphere': diversity of novel branching and network-forming amoebae helps to define Variosea (Amoebozoa). Protist, 166, 271-295.
Keywords: Network-forming amoebae; reticulate; Variosea; Amoebozoa; molecuar phylogeny; SSU rDNA
Strain(s): 3722 
PubMed: 25965302
DOI: 10.1016/j.protis.2015.04.001
Bertuzz, S., Gustavs, L., Pandolfini, G., Tretiac, M. 2017 Heat shock treatments for the control of lithobionts: A case study with epilithic green microalgae. Int. Biodeterior. Biodegrad., 123, 236-243.
Keywords: Biocides; Biodeteriogens; Chlorophyll a fluorescence; Hydration; Polyols; Non-reducing sugars
Strain(s): 2166 
DOI: 10.1016/j.ibiod.2017.06.023
Bhattacharjee, S., Mishra, A. K. 2020 The tale of caspase homologues and their evolutionary outlook: deciphering programmed cell death in cyanobacteria. J. Exp. Bot., 71, 4639-4657.
Keywords: Altruistic adaptation; caspase homologues; horizontal gene transfer; orthocaspases, PCD morphotypes; programmed cell death
Strain(s): 843 
DOI: 10.1093/jxb/eraa213
Bhattad, T., Koradiya, A., Prakash, G. 2021 Prebiotic activity of paramylon isolated from heterotrophically grown Euglena gracilis. Heliyon, 7, e07884 (article ID).
Strain(s): 48 
PubMed: 34584997
DOI: 10.1016/j.heliyon.2021.e07884
Bhuiyan, MAH., Faria, DG., Horiguchi, T., Sym, SD., Suda, S. 2015 Taxonomy and phylogeny of Pyramimonas vacuolata sp. nov. (Pyramimonadales, Chlorophyta). Phycologia, 54, 323–332.
Keywords: 18S rDNA sequence; Morphology; Phylogeny; Pyramimonas; Pyramimonas vacuolata sp. nov.; rbcL; Taxonomy; Ultrastructure
Strain(s): 3400 
DOI: 10.2216/15-004.1
Bibby, T. S., Mary, I., Nield, J., Partensky, F., Barber, J. 2003 Low-light-adapted Prochlorococcus species possess specific antennae for each photosystem. Nature, 424, 1051-1054.
Strain(s): 28802887 
PubMed: 12944966
DOI: 10.1038/nature01933
Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souzade, C., Pinto, E., Hansen, P. J., Larsen, T. O., Varga, E. 2019 A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum. Harmful Algae, 81, 10-17.
Keywords: Chemotaxonomy; Prymnesium parvum; ITS-sequencing; High resolution mass spectrometry; Prymnesin
Strain(s): 101710181812 
PubMed: 30638493
DOI: 10.1016/j.hal.2018.11.010
Blanc, G., Agarkova, I., Grimwood, J., Kou, A., Brueggeman, A., Dunigan, D. D., Gurnon, J., Ladunga, I., Lindquist, E., Lucas, S., Pangilinan, J., Proschold, T., Salamov, A., Schmutz, J., Weeks, D., Yamada, T., Lomsadze, A., Borodovsky, M., Claverie, J. M., Grigoriev, I. V., Van Etten, J. L. 2012 The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 13, R39 (article ID).
Strain(s): 2166 
PubMed: 22630137
DOI: 10.1186/gb-2012-13-5-r39
Bock, N. A., Charvet, S., Burns, J., Gyaltshen, Y., Rozenberg, A., Duhamel ,S., Kim, E. 2021 Experimental identification and in silico prediction of bacterivory in green algae. ISME J., 15, 1987-2000.
Strain(s): 254296626995 
PubMed: 33649548
DOI: 10.1038/s41396-021-00899-w
Boo, S. M., Kim, H. S., Shin, W., Boo, G. H., Cho, S. M., Jo, B. Y., Kim, J.-H., Kim, J. H., Yang, E. C., Siver, P. A., Wolfe, A. P., Bhattacharya, D., Andersen, R. A., Yoon, H. S. 2010 Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Mol. Ecol., 19, 4328-4338.
Keywords: biogeography; endemism; Synura; Synurophyceae; ubiquity hypothesis
Strain(s): 2331007 
PubMed: 25241409
DOI: 10.1111/j.1365-294X.2010.04813.x
Boonmak, P., Liu, X., Ban, S., Sanoamuang, L. 2018 Effects of different algal diets and carbon supplies on larval development, growth and survival in the freshwater copepod Mongolodiaptomus malaindosinensis (Copepoda: Calanoida). Plankton Benthos Res., 13, 163-172.
Keywords: Chlamydomonas reinhardtii; Cryptomonas tetrapyrenoidosa; post-embryonic development; tropical copepod; zooplankton
Strain(s): 282 
DOI: 10.3800/pbr.13.163
Bowers, H. A., Tomas, C., Tengs, T., Kempton, J. W., Lewitus, A. J., Oldach, D. W. 2006 Raphidophyceae [Chadefaud ex Silva] systematics and rapid identification: sequence analyses and real-time PCR assays. J. Phycol., 42, 1333-1348.
Keywords: Chattonella; Fibrocapsa; Heterosigma; PCR; Raphidophyceae; Taqman
Strain(s): 670 
DOI: 10.1111/j.1529-8817.2006.00285.x
Bowler, C. et al. 2008 The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 39–244.
Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements
Strain(s): 4392 
PubMed: 18923393
DOI: 10.1038/nature07410
Brand, J. J. & Wright, J. N. 1989 Hydrogen production by eukaryotic algae. Biotech. Bioeng., 33, 1482-1488.
Strain(s): 2151216921902194220122022203220422112213221922792291 
Brito, M. L. M., Han, W. Q., Li, G. Q. 2019 Effects of diurnal fluctuation of temperature on growth, photosynthetic activity response of two morphotypes cells of Emiliania huxleyi. Indian J. Mar. Sci., 48, 349-356.
Keywords: Calcified cells (C-Cells); Coccoliths; Emiliania huxleyi (E. huxleyi); Morphotypes cells; Naked cells (N-Cells); PAM fluorometry
Strain(s): 1318 
Brooks, A. E. 1966 The sexual cycle and intercrossing in the genus Astrephomene. J. Protozool., 13, 367-375.
Strain(s): 853854855 
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Brown, I. I., Mummey, D., Cooksey. K. E. 2005 A novel cyanobacterium exhibiting an elevated tolerance for iron. FEMS Microbiol. Ecol., 52, 307-314.
Keywords: Novel cyanobacterium; Iron tolerance; Iron depositing hot spring; Great Yellowstone area
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Buchmanna, K. & Becker, B. 2009 The system of contractile vacuoles in the green alga Mesostigma viride (Streptophyta). Protist, 160, 427-443.
Keywords: Mesostigma viride; Streptophyta; contractile vacuole; 3-D reconstruction; transmission electron microscopy
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PubMed: 19356977
DOI: 10.1016/j.protis.2009.01.002
Bürger, J., Miyachi, S., Galland, P., Senger, H. 1988 Quantum requirements of photosynthetic oxygen evolution and 77K fluorescence emission spectra in unicellular green algae grown under low- and high-CO2-conditions. Botanica Acta, 101, 229-232.
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Busch, A., Nield, J., Hippler, M. 2010 The composition and structure of photosystem I-associatied antenna from Cyanidioschyzon merolae. Plant J., 62, 886-897.
Keywords: Cyanidioschyzon merolae; Lhcr; photosystem I; phycobilisomes; proteomics
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PubMed: 20230507
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Butler, T. & Golan, Y. 2020 Astaxanthin production from microalgae. In Microalgae biotechnology for food, health and high value products, Eds. by Alam, Md. A., Xu, J-L., Wang, Z., Springer, Singapore, pp. 175-242.
Keywords: Astaxanthin; Contamination; Biomass; Bioreactors; Extraction; H. pluvialis
Strain(s): 144 
DOI: 10.1007/978-981-15-0169-2_6
Byamba, T., Hasegawa, K., Maeda, I. 2022 Removal of Pb (II) from aqueous solution by a pectin-producing alga, Penium margaritaceum, immobilized on filter paper. Microbiol. Res., 13, 1007-1017.
Keywords: lead; unicellular alga; pectin; immobilization; filter paper
Strain(s): 217303 
DOI: 10.3390/microbiolres13040073
Cadel-Six, S., Dauga, C., Castets, A. M., Rippka, R., Bouchier, C., de Marsac, N. T., Welker, M. 2008 Halogenase genes in nonribosomal peptide synthetase gene clusters of Microcystis (Cyanobacteria): sporadic distribution and evolution. Mol. Biol. Evol., 25, 2031-2041.
Keywords: halogenase; cyanopeptolin; aeruginosin; DNA rearrangement; secondary peptide metabolite; chlorination; internal transcribed spacer; phylogeny
Strain(s): 8998101102298 
PubMed: 18614525
DOI: 10.1093/molbev/msn150
Canini, A., Civitareale, P., Marini, S., Grilli Caiola, M., Rotilio, G. 1992 Purification of iron superoxide dismutase from the cyano-bacterium Anabaena cylindrica Lemm. and localization of the enzyme in heterocysts by immunogold labeling. Planta, 187, 438-444.
Keywords: Anabaena; heterocyst; iron-superoxide dismutase (immunogold labeling)
Strain(s): 19 
PubMed: 24178137
DOI: 10.1007/BF00199961
Cannell, R. J. P., Owsianka, A. M., Walker, J. M. 1988 Results of a large-scale screening programme to detect antibacterial activity from freshwater algae. Br. Phycol. J., 23, 41-44.
Strain(s): 6862287 
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Cao, H., Shimura, Y., Kawachi, M., Yin, Y. 2014 Draft genome sequence of the toxic bloom-forming cyanobacterium Aphanizomenon flos-aquae NIES-81. GenomeA, 2, e00044-14 (article ID).
Strain(s): 81 
PubMed: 24526634
DOI: 10.1128/genomeA.00044-14
Cao, H., Shimura, Y., Steffen, M. M., Yang, Z., Lu, J., Joel, A., Jenkins, L., Kawachi, M., Yin, Y., Garcia-Pichel, F. 2020 The trait repertoire enabling cyanobacteria to bloom assessed through comparative genomic complexity and metatranscriptomics. mBio, 11, e01155-20 (article ID).
Keywords: Symbiodiniaceae; Durusdinium trenchii; WGS; MAAs; GMC oxidoreductase
Strain(s): 81843 
PubMed: 32605986
DOI: 10.1128/mBio.01155-20
Cao, H., Xu, D., Zhang, T., Ren, Q., Xiang, L., Ning, C., Zhang, Y., Gao, R. 2022 Comprehensive and functional analyses reveal the genomic diversity and potential toxicity of Microcystis. Harmful Algae, 113, 102186 (article ID).
Keywords: Microcystis; Pangenome; Toxicity; Diversity; Classification
Strain(s): 8810229884324812549 
PubMed: 35287927
DOI: 10.1016/j.hal.2022.102186
Carbone, D. A., Pellone, P., Lubritto, C., Ciniglia, C. 2021 Evaluation of microalgae antiviral activity and their bioactive compounds. Antibiotics-Basel, 10, 746 (article ID).
Keywords: microalgae; virus; antiviral compounds; SARS-CoV-2; microalgae antiviral activity; coronavirus disease
Strain(s): 204 
PubMed: 34202941
DOI: 10.3390/antibiotics10060746
Cardol, P., Bailleul, B., Rappaport, F., Derelle, E., Béal, D., Breyton, C., Bailey, S., Wollman, F. A., Grossman, A., Moreau, H., Finazzi, G. 2008 An original adaptation of photosynthesis in the marine green alga Ostreococcus. Proc. Nati. Acad. Sci. U. S. A., 105, 7881-7886.
Keywords: marine environment; PTOX; water cycle; eletron flow; photoprotection
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Carefoot, J. R. 1966 Sexual reproduction and intercrossing in Volvulina steinii. J. Phycol., 2, 150-156.
Strain(s): 896897898 
PubMed: 27053484
DOI: 10.1111/j.1529-8817.1966.tb04614.x
Carrell, A. A., Lawrence, T. J., Cabugao, K. G. M., Carper, D. L., Pelletier, D. A., Lee, J. H., Jawdy, S., Grimwood, J., Schmutz, J., Hanson, P. J., Shaw, A. J., Weston, D. J. 2022 Habitat-adapted microbial communities mediate Sphagnum peatmoss resilience to warming. New Phytol., 234, 2111-2125.
Keywords: climate change; heat tolerance; microbiome transfer; moss; peatland; Sphagnum; symbiosis; synthetic communities
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DOI: 10.1111/nph.18072
Casamatta, D. A., Villanueva, C. D., Garvey, A. D., Stocks, H. S., Vaccarino, M., Dvořák, P., Hašler, P., Johansen, J. R. 2020 Reptodigitus chapmanii (Nostocales, Hapalosiphonaceae) gen. nov.: a unique Nostocalean (Cyanobacteria) genus based on a polyphasic approach. J. Phycol., 56, 425-436.
Keywords: cyanobacteria; Phylogeny; 16S rDNA; systematics
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PubMed: 31837017
DOI: 10.1111/jpy.12954
Cattolico, R. A., Jacobs, M. A., Zhou, Y., Chang, J., Duplessis, M., Lybrand, T., McKay, J., Ong, H. C., Sims, E., Rocap, G. 2008 Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains. BMC Genomics, 9, 211-230.
Strain(s): 293 
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Cellamare, M., Duval, C., Drelin, Y., Djediat, C., Touibi, N., Agogué, H., Leboulanger, C., Ader, M., Bernard, C. 2018 Characterization of phototrophic microorganisms and description of new cyanobacteria isolated from the saline-alkaline crater-lake Dziani Dzaha (Mayotte, Indian Ocean). FEMS Microbiol. Ecol., 94 fiy108 (article ID).
Keywords: cyanobacteria; microalgae; crater-lake; saline-alkaline lake; polyphasic approach; Arthrospira
Strain(s): 1410 
PubMed: 29878107
DOI: 10.1093/femsec/fiy108
Chambonniere, P., Ramírez-Romero, A., Dimitriades-Lemaire, A., Sassi, J.-E., Delrue, F. 2022 Photosynthetic carbon uptake correlates with cell protein content during lipid accumulation in the microalga Chlorella vulgaris NIES 227. FERMENTATION, 8, 614 (article ID).
Keywords: microalgae; Chlorella vulgaris; photosynthesis; productivity; biofuel; lipid
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DOI: 10.3390/fermentation8110614
Chamizo, S., Adessi, A., Certini, G., De Philippis, R. 2020 Cyanobacteria inoculation as a potential tool for stabilization of burned soils. Restor. Ecol., 28, S106-S114.
Keywords: biocrust; erosion; exopolysaccharide content; hydrophobicity; penetration resistance; wildfire
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DOI: 10.1111/rec.13092
Chamizo, S., Adessi, A., Mugnai, G., Simiani, A., De Philippis, R. 2019 Soil type and cyanobacteria species influence the macromolecular and chemical characteristics of the polysaccharidic matrix in induced biocrusts. Microb. Ecol., 78, 482–493.
Keywords: Biological soil crust; Cyanobacteria inoculation; Molecular weight; Monosaccharide composition; Loosely bound; EPS; Tightly bound EPS
Strain(s): 19562121 
PubMed: 30535915
DOI: 10.1007/s00248-018-1305-y
Chamizo, S., Mugnai, G., Rossi, F., Certini, G., De Philippis, R. 2018 Cyanobacteria inoculation improves soil stability and fertility on different textured soils: Gaining insights for applicability in soil restoration. Front. Environ. Sci., 6, 49 (article ID).
Keywords: autotrophic organisms; biocrust development; exopolysaccharides; organic carbon; soil nitrogen, soil; degradation
Strain(s): 19562121 
DOI: 10.3389/fenvs.2018.00049
Chatelain, P., Blanchard, C., Astier, J., Klinguer,A., Wendehenne, D., Jeandroz, S., Rosnoblet, C. 2022 Reliable reference genes and abiotic stress marker genes in Klebsormidium nitens. Sci Rep, 12, 18988 (article ID).
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Chen, K., Tanaka, H., Takeda, F., Ebie, Y., Yamazaki, H. 2023 Evaluation of algal growth inhibition of effluents for treated water from tandoku-syori and gappei-syori johkasou using the WET method. J. Water Environ. Technol., 21, 141-150.
Keywords: whole effluent toxicity; drainage management; Raphidocelis subcapitata; johkasou
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DOI: 10.2965/jwet.22-084
Chen, M., Rubin, G. M., Jiang, G., Raad, Z., Ding, Y. 2021 Biosynthesis and heterologous production of mycosporine-like amino acid palythines. J. Org. Chem., 86, 11160–11168.
Strain(s): 25 
PubMed: 34006097
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Chen, M., Tian, L.-L., Ren, C.-Y., Xu, C.-Y., Wang, Y.-Y., Li, L. 2019 Extracellular polysaccharide synthesis in a bloom-forming strain of Microcystis aeruginosa: implications for colonization and buoyancy. Sci Rep, 9, 1251 (article ID).
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PubMed: 30718739
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Chen, Y., González-Pech, R. A., Stephens, T. G., Bhattacharya, D., Chan, C. X. 2020 Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes. J. Phycol., 56, 6-10.
Strain(s): 4077 
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DOI: 10.1111/jpy.12947
Cheng, T., Zhang, W., Xhang, W., Yuan, G., Wang, H., Liu, T. 2017 An oleaginous filamentous microalgae Tribonema minus exhibits high removing potential of industrial phenol contaminants. Bioresour. Technol., 238, 749-754.
Keywords: Oleaginous filamentous microalgae; Phenol removal; Phenol-uptake capacity; Residual phenol
Strain(s): 2175 
PubMed: 28526282
DOI: 10.1016/j.biortech.2017.05.040
Cheng, Y.-I., Chou, L., Chiu, Y.-F., Hsueh, H.-T., Kuo, C.-H., Chu, H.-A. 2020 Comparative genomic analysis of a novel strain of Taiwan hot-spring cyanobacterium Thermosynechococcus sp. CL-1. Front. Microbiol., 11, 82 (article ID).
Keywords: cyanobacterium; Thermosynechococcus; genome; comparative genomics; thermophilic; cyanobacterium; adaption
Strain(s): 2134 
PubMed: 32082292
DOI: 10.3389/fmicb.2020.000
Chernomor, O., Peters, L., Schneidewind, J., Loeschcke, A., Knieps-Grünhagen, E., Schmitz, F., von Lieres, E.,Kutta, R. J., Svensson, V., Jaeger, K., Drepper, T.,von Haeseler, A., Krauss, U. 2021 Complex evolution of light-dependent protochlorophyllide oxidoreductases in aerobic anoxygenic phototrophs: origin, phylogeny and function. Mol. Biol. Evol., 38, 819-837.
Keywords: light-driven enzyme; chlorophyll biosynthesis; evolution; aerobic anoxygenic phototrophic bacteria; photosynthesis
Strain(s): 9812135 
PubMed: 32931580
DOI: 10.1093/molbev/msaa234
Chia, M. A., Ameh, I., George, K. C., Balogun, E. O., Akinyemi, S. A., Lorenzi, A. S. 2022 Genetic diversity of microcystin producers (cyanobacteria) and microcystin congeners in aquatic resources across Africa: A review paper. Toxins, 10, 772 (article ID).
Keywords: biological risk; cyanobacteria; cyanotoxin; water supply; African continent; molecular markers; mcy genes
Strain(s): 89102298843 
PubMed: 36548605
DOI: 10.3390/toxics10120772
Chiang, Y.-H., Huang, Y.-J., Fu, H.-Y. 2022 Identifcation of multiple nonphotochemical quenching processes in the extremophilic red alga Cyanidioschyzon merolae. Photosynth. Res., 154, 125–141.
Keywords: Energy spillover; Energetic decoupling; Functional antenna size
Strain(s): 3377 
PubMed: 36155877
DOI: 10.1007/s11120-022-00963-2
Chihara, M., Inouye, I., Takahata, N. 1986 Oltmannsiellopsis., a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae). Arch. Protistenk., 132, 313-324.
Strain(s): 359360 
DOI: 10.1016/S0003-9365(86)80026-4
Chin, Y.-Y., Chu, W.-L., Kok, Y.-Y., Phang, S.-M., Wong, C.-Y., Tan, B.-K., Mustafa, E. M. 2019 Sensitivity of selected tropical microalgae isolated from a farmland and a eutrophic lake to atrazine and endosulfan. J. Appl. Phycol., 31, 2981–299.
Keywords: Atrazine; Endosulfan; Microalgae; Oxidative stress; Chlorella; Scenedesmus
Strain(s): 35 
DOI: 10.1007/s10811-019-01800-1
China, S. & Fujii, K. 2018 Isolation of high-CO2-acclimated Micractinium sp. strains from eutrophic reservoir water. Algal Res., 34, 126-133.
Keywords: Micractinium sp.; High-CO2-acclimation; Vitamin; γ-Aminobutyric acid; C18 unsaturated fatty acid
Strain(s): 41294130 
DOI: 10.1016/j.algal.2018.07.015
Chiu, Y.-T., Yen, H.-K., Lin, T.-F. 2016 An alternativemethodtoquantify2-MIB producing cyanobacteriain in drinking water reservoirs: Method development and field applications. Environ. Res., 151, 618-627.
Keywords: Cyanobacteria; 2-methylisoborneol(2-MIB); 2-MIB-synthesis gene(mibC gene); Tasteandodor; Real-timePCR
Strain(s): 8151282490521042116 
PubMed: 27607443
DOI: 10.1016/j.envres.2016.08.034
Cho, S. J., Sung, Y. J., Lee, J. S., Yu, B. S., Sim, S. J. 2021 Robust cyst germination induction in Haematococcus pluvialis to enhance astaxanthin productivity in a semi-continuous outdoor culture system using power plant flue gas. Bioresour. Technol., 338, 125533 (article ID).
Keywords: Haematococcus pluvialis; Astaxanthin; Cyst germination; Outdoor semi-continuous culture; Power plant flue gas
Strain(s): 144 
PubMed: 34284295
DOI: 10.1016/j.biortech.2021.125533
Cho, Y., Hidema, S., Omura, T., Koike, K., Koike, K., Oikawa, H., Konoki, K., Oshima, Y., Yotsu-Yamashita, M. 2021 SxtA localizes to chloroplasts and changes to its 3′UTR may reduce toxin biosynthesis in non-toxic Alexandrium catenella (Group I). Harmful Algae, 101, 101972 (article ID).
Keywords: Saxitoxin; Biosynthesis; Dinoflagellate; Chloroplast; Localization; 3′UTR
Strain(s): 678 
PubMed: 33526188
DOI: 10.1016/j.hal.2020.101972
Cho, Y., Ozeki, R., Yotsu-Yamashita, M., Oshima, Y. 2013 Single-cell analysis of paralytic shellfish toxins in Alexandrium tamarense by HPLC with post-column fluorescent derivatization. Harmful Algae, 25, 47-53.
Keywords: Single-cell analysis; Alexandrium tamarense; Paralytic shellfish toxins
Strain(s): 678 
DOI: 10.1016/j.hal.2013.02.005
Cho, Y.-L., Lee, Y.-C., Hsu, L.-C., Wang, C.-C., Chen, P.-C., Liu, S.-L., Teah, H.-Y., Liu, Y.-T., Tzou, Y.-M. 2020 Molecular mechanisms for Pb removal by Cyanidiales: a potential biomaterial applied in thermo-acidic conditions. Chem. Eng. J., 401, 125828 (article ID).
Keywords: Cyanidiales; Thermoacidophilic; Lead; Speciation; XAS; Protein secondary structure
Strain(s): 5513377 
DOI: 10.1016/j.cej.2020.125828
Choi, G-G., Ahn, C-Y., Oh, H-M. 2012 Phylogenetic relationships of Arthrospira strains inferred from 16S rRNA gene and cpcBA-IGS sequences. Algae, 27, 75-82.
Keywords: Arthrospira (Spirulina); cpcBA-IGS; phylogenetic analysis; 16S rRNA gene
Strain(s): 3946 
DOI: 10.4490/algae.2012.27.2.075
Choi, H. I., Lee, J. S., Choi, J. W., Shin, Y. S., Sung, Y. J., Hong, M. E., Kwak, H. S., Kim, C. Y., Sim, S. J. 2019 Performance and potential appraisal of various microalgae as direct combustion fuel. Bioresour. Technol., 273, 341-349.
Keywords: Microalgae; Solid fuel; Direct combustion; The holistic analyses; Negative emissions
Strain(s): 144 
PubMed: 30448687
DOI: 10.1016/j.biortech.2018.11.030
Choi, H. J., Joo, J.-H., Kim, J.-H., Wang, P., Ki, J.-S. 2018 Morphological characterization and molecular phylogenetic analysis of Dolichospermum hangangense (Nostocales, Cyanobacteria) sp. nov. from Han River, Korea. Algae, 33, 143-156.
Keywords: Dolichospermum hangangense; morphology; rbcLX; 16S rRNA; 16S-23S ITS
Strain(s): 817168116831934 
DOI: 10.4490/algae.2018.33.5.2
Choi, K., Imai, A., Kim, B., Matsushige, K. 2001 Properties of dissolved organic carbon (DOC) released by three species of blue-green algae. Korean J. Limnol., 34, 20-29.
Keywords: extracellular organic carbon; fractionation; blue-green algae; growth phases
Strain(s): 4474204 
Choi, K., Ueki, M., Imai, A., Kim, B., Kawabata, Z. 2004 Photoalteration of dissolved organic matter (DOM) released from Microcystis aeruginosa in different growth phases: DOM-fraction distribution and biodegradability. Arch. Hydrobiol., 159, 271-286.
Keywords: algal DOM; growth phase; UV effects; photoalteration; biodegradability; chemical composition
Strain(s): 843 
DOI: 10.1127/0003-9136/2004/0159-0271
Choi, Y. Y., Joun, J. M., Lee, J., Hong, M. E., Pham, H., Chang, W. S., Sim, S. J. 2017 Development of large-scale and economic pH control system for outdoor cultivation of microalgae Haematococcus pluvialis using industrial flue. Bioresour. Technol., 244, 1235-1244.
Keywords: Haematococcus pluvialis; Astaxanthin; Polymeric thin-film photobioreactor; Autotrophic buffer system; Flue gas
Strain(s): 144 
PubMed: 28647321
DOI: 10.1016/j.biortech.2017.05.147
Choi, YY., Hong, ME., Jin, ES., Woo, HM., Sim, SJ 2018 Improvement in modular scalability of polymeric thin-film photobioreactor for autotrophic culturing of Haematococcus pluvialis using industrial flue gas. Bioresour. Technol., 249, 519-526.
Keywords: Haematococcus pluvialis; Autotrophic; Bubble column photobioreactor; Scale-up; Hydrodynamic property
Strain(s): 144 
PubMed: 29078178
DOI: 10.1016/j.biortech.2017.10.060
Chong, J., Jackson, C., Kim, J. I., Yoon, H. S., Reyes-Prieto, A. 2014 Molecular markers from different genomic compartments reveal cryptic diversity within glaucophyte species. Mol. Phylogenet. Evol., 76, 181-188.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Cryptic species diversity; Archaeplastida
Strain(s): 76376496613691961 
PubMed: 24680917
DOI: 10.1016/j.ympev.2014.03.019
Chonudomkul, D., Yongmanitchai, W., Theeragool, G., Kawachi, M., Kasai, F., Kaya, K., Watanabe, M. M. 2004 Morphology, genetic diversity, temperature tolerance and toxicity of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) strains from Thailand and Japan. FEMS Microbiol. Ecol., 48, 345-355.
Keywords: toxic cyanobacteria; Cylindrospermopsis raciborskii; STRR sequences; Thailand; Japan; low-temperature adapted group; genotypic clusters
Strain(s): 99199299310401041308530863087308830893091309230933094309530963097309830993100310131023103 
PubMed: 19712304
DOI: 10.1016/j.femsec.2004.02.014
Christodoulou, M., Wahlsten, M., Sivonen, K. 2023 Morphological and Molecular Evaluation of Pseudanabaena epilithica sp. nov. and P. suomiensis sp. nov. (Pseudanabaenaceae, Cyanobacteria) from Finland. Diversity-Basel, 15, 909 (article ID).
Keywords: Pseudanabaena; cyanobacteria; polyphasic approach; 16S rRNA gene; 16S–23S ITS; Finland
Strain(s): 512406240634064406542374238 
DOI: 10.3390/d15080909
Chu, C. Y., Liao, W. R., Huang, R., Lin, L. P. 2004 Haemagglutinating and antibiotic activities of freshwater microalgae. World J. Microbiol. Biotechnol., 20, 817–825.
Keywords: Antibiotic activity; erythrocytes; freshwater microalgae; haemagglutination
Strain(s): 22622721592163216521692175218922082211221322142229223122332240224122432247224832773284 
DOI: 10.1007/s11274-004-8712-6
Chumpolkulwong, N., Kakizono, T., Ishii, H. 1997 Enzymatic conversion of b-carotene to astaxanthin by cell-extracts of a green alga Haematococcus pluvialis. Biotechnol. Lett., 19, 443-446.
Strain(s): 144 
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Churro, C., Semedo-Aguiar, A. P., Silva, A.D., Pereira-Leal, J. B., Leite, R. B. 2020 A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria. Sci Rep, 10, 8679 (article ID).
Strain(s): 2521002111 
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Ciniglia, C., Cascone, C., Giudice, R. L., Pinto, G., Pollio, A. 2005 Application of methods for assessing the geno- and cytotoxicity of Triclosan to C. ehrenbergii. J. Hazard. Mater., 122, 227-232.
Keywords: Closterium ehrenbergii; Triclosan; sexual reproduction; vegetative reproduction; comet assay
Strain(s): 228229 
PubMed: 15967278
DOI: 10.1016/j.jhazmat.2005.03.002
Coesel, P. F. M. 1991 Ammonium dependency in Closterium aciculare T. West, a planktonic desmid from alkaline, eutrophic waters. J. Plankton Res., 13, 913-922.
Strain(s): 258 
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Coleman, A. W. 1959 Sexual isolation in Pandorina morum. J. Protozool., 6, 249-264.
Strain(s): 886887 
DOI: 10.1111/j.1550-7408.1959.tb04366.x
Coleman, A. W. 1988 The autofluorescent flagellum: a new phylogenetic enigma. J. Phycol., 24, 118-120.
Keywords: autofluorescence; Chrysophyceae; flagellum; fluorescence; heterokont; Ochromonas; photoreceptor; Prymnesium
Strain(s): 21422144 
DOI: 10.1111/j.1529-8817.1988.tb04465.x
Coleman, A.W. 2001 Biogeography and speciation in the Pandorina/Volvulina (Chlorophyta) superclade. J. Phycol., 37, 836-851.
Keywords: biogeography; ITS; Pandorina; Volvulina; Volvocaceae; phylogenetics; speciation; Yamagishiella
Strain(s): 583 
DOI: 10.1046/j.1529-8817.2001.01043.x
Connell, L. 2002 Rapid identification of marine algae (Raphidophyceae) using three-primer peR amplification of nuclear internal transcribed spacer (ITS) regions from fresh and archived material. Phycologia, 41, 15-21.
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Connell, L. & Cattolico, R. A. 1996 Fragile algae: axenic culture of field-collected samples of Heterosigma carterae. Mar. Biol., 125, 421-426.
Strain(s): 293 
DOI: 10.1007/BF00346322
Conradi, F. D., Mullineaux, C. W., Wilde, A. 2020 The role of the cyanobacterial Type IV pilus machinery in finding and maintaining a favourable environment. Life-Basel, 10, 252 (article ID).
Strain(s): 2133 
PubMed: 33114175
DOI: 10.3390/life10110252
Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl. Environ. Microbiol., 69, 5716-5721.
Strain(s): 13411342134313441345134613471348 
PubMed: 12957969
DOI: 10.1128/AEM.69.9.5716-5721.2003
Crosbie, N. D., Pöckl, M., Weisse, T. 2003 Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting. J. Microbiol. Methods, 55, 361-370.
Keywords: cell culture; eukaryotic autotrophic picoplankton; flow cytometry; phycocyanin; phycoerythrin; Synechococcus
Strain(s): 13411342134313441345134613471348 
Cunningham, B. R., Greenwold, M. J., Lachenmyer, E. M., Heidenreich, K, M., Davis, A. C., Dudycha, J. L., Richardson, T. L. 2019 Light capture and pigment diversity in marine and freshwater cryptophytes. J. Phycol., 55, 552-564.
Strain(s): 697698701702708 
PubMed: 30468692
DOI: 10.1111/jpy.12816
Cunningham, Jr., F. X., Lee, H., Gantt, E. 2007 Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. Eukaryot. Cell, 6, 533-545.
Strain(s): 13323377 
PubMed: 17085635
DOI: 10.1128/EC.00265-06
Curren, E., Teruaki, Y., Kuwahara, V. S., Leong, S. C. Y. 2019 Rapid profiling of tropical marine cyanobacterial communities. Reg. Stud. Mar. Sci., 25, 100485 (article ID).
Keywords: Cyanobacteria; MinION-Oxford Nanopore sequencer; Biodiversity; 16S rRNA amplicon sequencing; Long-read sequencing; Coastal waters; Southeast Asia; Monitoring
Strain(s): 22254284321352481 
DOI: 10.1016/j.rsma.2018.100485
Dahedl, E. K. & Urakawa, H. 2023 Differential effects of hydrogen peroxide and L-lysine treatments on the growth of freshwater Cyanophyta and Chlorophyta. Ecologies, 4, 355-370.
Keywords: hydrogen peroxide; L-lysine; algaecide; Microcystis aeruginosa; cyanobacteria
Strain(s): 881028434325 
DOI: 10.3390/ecologies4020023
Danbara, A. & Shiraiwa, Y. 1999 The requirement of selenium for the growth of marine coccolithophorids, Emiliania huxleyi, Gephyrocapsa oceanica and Helladosphaera sp. (Prymnesiophyceae). Plant Cell Physiol, 40, 762-766.
Keywords: artificial seawater; coccolithophorids; Emiliania huxleyi; Gephyrocapsa oceanica; Helladosphaera; selenium-depletion; selenium-requirement
Strain(s): 837838 
DOI: 10.1093/oxfordjournals.pcp.a029603
Darienko, T., Gustavs, L., Eggert, A., Wolf, W., Pröschold, T. 2015 Evaluating the species boundaries of green microalgae (Coccomyxa, Trebouxiophyceae, Chlorophyta) using integrative taxonomy and DNA barcoding with further implications for the species identification in environmental samples. PLoS One, 10, e0127838 (article ID).
Strain(s): 22522353 
PubMed: 26080086
DOI: 10.1371/journal.pone.0127838
Davison, H. R., Pilgrim, J., Wybouw, N., Parker, J., Pirro, S., Hunter-Barnett, S., Campbell, P. M., Blow, F., Darby, A. C., Hurst, G. D. D., Siozios, S. 2022 Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group. Nat. Commun., 13, 2630 (article ID).
Strain(s): 296425 
PubMed: 35551207
DOI: 10.1038/s41467-022-30385-6
Davison, J. R. & Bewley, C. A. 2019 Antimicrobial chrysophaentin analogs identified from laboratory cultures of the marine microalga Chrysophaeum taylorii. J. Nat. Prod., 82, 148-153.
Strain(s): 1699 
PubMed: 30623657
DOI: 10.1021/acs.jnatprod.8b00858
Davison, J. R., Rajwani, R., Zhao, G., Bewley, C. A. 2023 The genome of antibiotic-producing colonies of the Pelagophyte alga Chrysophaeum taylorii reveals a diverse and non-canonical capacity for secondary metabolism. Sci Rep, 13, 11944 (article ID).
Strain(s): 1699 
PubMed: 37488207
DOI: 10.1038/s41598-023-38042-8
De Halperin, D. R., Mendoza, M. L., De Caire, G. Z. 1973 Axenic cultures of blue-green algae (Cyanophyta). Physis secc. B. Buenos Aires., 32, 67-84 (in Spanish with English summary).
Strain(s): 37 
de Mendoza, A., Bonnet, A., Vargas-Landin, D. B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R. 2018 Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nat. Commun., 9, 1341 (article ID).
Keywords: DNA methylation; Epigenomics; Molecular evolution; Transposition
Strain(s): 2285 
PubMed: 29632298
DOI: 10.1038/s41467-018-03724-9
Decelle, J., Probert, I., Bittner, L., Not, F. 2012 An original mode of symbiosis in open ocean plankton. Proc. Natl. Acad. Sci. U. S. A., 109, 18000-18005.
Strain(s): 3881396 
PubMed: 23071304
DOI: 10.1073/pnas.1212303109
Decelle, J., Romac, S., Stern, R. F., Bendif, E., Zingone, A., Audic, S., Guiry, M. D., Guillou, L., Tessier, D., Le Gall, F., Gourvil, P., Dos Santos, A. L., Probert, I., Vaulot, D., de Vargas, C., Christen, R. 2015 PhytoREF: a reference database of the plastidial 16S rRNAgene of photosynthetic eukaryotes with curated taxonomy. Mol. Ecol. Resour., 15, 1435-1445.
Keywords: high-throughput sequencing; metabarcoding; photosynthesis; phytoplankton; plastidial 16S rRNA gene; protists
Strain(s): 7637642565 
PubMed: 25740460
DOI: 10.1111/1755-0998.12401
Deka, D., Marwein, R., Chikkaputtaiah, C., Kaki, S. S., Azmeera, T., Boruah, H. P. D., Velmurugan, N. 2020 Strain improvement of long-chain fatty acids producing Micractinium sp. by flow cytometry. Process Biochem., 96, 90-101.
Keywords: Long-chain fatty acids; Micractinium sp.; Strain improvement; Fluorescent activated cell sorter; Adaptive evolution
Strain(s): 2590 
DOI: 10.1016/j.procbio.2020.06.004
del Campo, J., Sieracki, M.E., Molestina, R., Keeling, P., Massana, R., Ruiz-Trillo, I. 2014 The others: our biased perspective of eukaryotic genomes. Trends Ecol. Evol., 29, 252-259.
Strain(s): 1000258225842587259026702673269126932694269526962697269927002707275127532755275627582761336933703371 
PubMed: 24726347
DOI: 10.1016/j.tree.2014.03.006
Delaux, P-M., Radhakrishnan, G.V., Jayaraman, D., Cheema, J., Malbreil, M., Volkening, J.D., Sekimoto, H., Nishiyama, T., Melkonian, M., Pokorny, L., Rothfels, C.J., Sederoff, H.W., Stevenson, D.W., Surek, B., Zhang, Y., Sussman, M.R., Dunand, C., Morris, R.J., Roux, C., Wong, G.K-S., Oldroyd, G.E.D., Ané, J-M. 2015 Algal ancestor of land plants was preadapted for symbiosis. Proc. Natl. Acad. Sci. U. S. A., 112, 13390-13395
Keywords: symbiosis; plant evolution; algae; plant–microbe interactions; phylogeny
Strain(s): 67 
PubMed: 26438870
DOI: 10.1073/pnas.1515426112
Delmont, T. O. & Eren, A. M. 2018 Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ, 6, e4320 (article ID).
Strain(s): 2880 
PubMed: 29423345
DOI: 10.7717/peerj.4320
Delrue, F., Cerqueira, M. R. D., Compadre, A., Alvarez, P., Fleury, G., Escoffier, C., Sassi, J. F. 2021 Hydroponic farm wastewater treatment using an indigenous consortium. Processes, 9, 519 (article ID).
Strain(s): 2272152 
DOI: 10.3390/pr9030519
Demura, M., Kawachi, M., Kunugi, M., Nishizawa, T., Kasai, F., Watanabe, M. M. 2007 Development of microsatellite markers for the red tide-forming harmful species Chattonella antiqua, C. marina, and C. ovata (Raphidophyceae). Mol. Ecol. Notes, 7, 315-317.
Keywords: Chattonella; harmful algal bloom; microsatellite; phytoplankton; Raphidophyceae; red tide
Strain(s): 2 
DOI: 10.1111/j.1471-8286.2006.01592.x
Demura, M., Nakayama, T., Kasai, F., Kawachi, M. 2014 Genetic structure of Japanese Chattonella marina (Raphidophyceae) populations revealed using microsatellite markers. Phycol. Res., 62, 102-108.
Keywords: Chattonella marina var. antiqua; Chattonella marina var. marina; genetic structure; isolation by distance; microsatellite marker; population genetics
Strain(s): 1231483848586113114115116118121161557197419751976197719781980198119821983198423832384238523862387238823892390239123922393239423952396239723982399240024012402240324042405240624072509251025112512251325142515251625172518 
DOI: 10.1111/pre.12047
Demura, M., Noël, M.-H., Kasai, F., Watanabe, M. M., Kawachi, M. 2009 Taxonomic revision of Chattonella antiqua, C. marina and C. ovata (Raphidophyceae) based on their morphological characteristics and genetic diversity. Phycologia, 48, 518-535.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella ovata; COI; COX1; Genetic diversity; ITS; Microsatellite; Morphology; Phylogeny; Population; Raphidophyceae; rbcL; Speciation; Taxonomy
Strain(s): 123569101483848511311411611814616129355756160367171684919741975197619771978198019811982198319841986238323842385238623872388238923912392239323942395239623972398239924002401240224032404240524062407 
DOI: 10.2216/08-98.1
Denboh, T., Hendrayanti, D., Ichimura, T. 2001 Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data. J. Phycol., 37, 1063-1072.
Keywords: Charophyceae; Closterium; desmid; molecular phylogeny; placoderm; SSU rDNA; Zygnematales
Strain(s): 52125165170174175180181185187188191194198199200339449 
DOI: 10.1046/j.1529-8817.2001.00146.x
Denboh, T., Ichimura, T., Hendrayanti, D., Coleman, A. W. 2003 Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 Group I intron and ITS2 of nuclear rDNA. J. Phycol., 39, 960-977.
Keywords: biological species; Closterium; group I introns; ITS2; mating group; molecular phylogeny; speciation
Strain(s): 172173174182183228229 
DOI: 10.1046/j.1529-8817.2003.02145.x
Deodatoa, C. R., Barlow, S. B., Hovde, B. T., Cattolico, R. A. 2019 Naked Chrysochromulina (Haptophyta) isolates from lake and river ecosystems: An electron microscopic comparison including new observations on the type species of this taxon. Algal Res., 40, 101492.
Keywords: Chrysochromulina; Freshwater; Scale-less; Electron microscopy; Morphology; Cryptic species complexes
Strain(s): 562 
DOI: 10.1016/j.algal.2019.101492
Devi, A., Chiu, Y.-T., Hsueh, H.-T., Lin, T.-F. 2021 Quantitative PCR based detection system for cyanobacterial geosmin/2-methylisoborneol (2-MIB) events in drinking water sources: Current status and challenges. Water Res., 188, 116478 (article ID).
Keywords: biomolecular; drinking water; database; geo; mic; monitoring; Taq-Man probes
Strain(s): 5124062406342374238 
PubMed: 33045635
DOI: 10.1016/j.watres.2020.116478
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Comparative ecophysiology of the xanthophyll cycle in six marine phytoplanktonic species. Protist, 160, 397-411.
Keywords: diatoxanthin; photoprotection; phytoplankton; picoplankton; pigments; xanthophyll cycle
Strain(s): 2687 
PubMed: 19375387
DOI: 10.1016/j.protis.2009.03.001
Dimier, C., Giovanni, S., Ferdinando, T., Brunet, C. 2009 Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnol. Oceanogr., 54, 823-836.
Strain(s): 2690 
DOI: 10.4319/lo.2009.54.3.0823
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Blue light induction of carbonic anhydrase activity in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 215-219.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photoreceptor
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077732
Dionisio, M. L., Tsuzuki, M., Miyachi, S. 1989 Light requirement for carbonic anhydrase induction in Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 207-213.
Keywords: blue light; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; light intensity
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077731
Dionisio-Sese, M. L., Fukuzawa, H., Miyachi, S. 1990 Light-induced carbonic anhydrase expression in Chlamydomonas reinhardtii. Plant Physiol., 94, 1103-1110.
Strain(s): 2235 
PubMed: 16667803
DOI: 10.1104/pp.94.3.1103
Dionisio-Sese, M. L., Miyachi, S. 1992 The effect of sodium chloride on carbonic anhydrase activity in marine microalgae. J. Phycol., 28, 619-624.
Keywords: carbonic anhydrase; Cl- activation; Cl- inhibition; marine microalgae; NaCl effect; photosynthesis
Strain(s): 2168 
DOI: 10.1111/j.0022-3646.1992.00619.x
Dittami, S. M., Riisberg, I., Edvardsen, B. 2013 Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta). Environ. Sci. Pollut. Res., 20, 6824-6837.
Keywords: Harmful algae; Dot blot hybridizations; PCR assays; DNA microarrays; Quantitative real-time PCR
Strain(s): 670 
PubMed: 23361173
DOI: 10.1007/s11356-012-1402-2
do Amaral, S. C., Monteiro, P. R., Neto, J. d. S. P., Serra, G. M., Gonçalves, E. C., Xavier, L. P., Santos, A. V. 2021 Current knowledge on microviridin from cyanobacteria. Mar. Drugs, 19, 17 (article ID).
Keywords: biotechnology; cyanobacteria; ecology; microviridin; oligopeptide
Strain(s): 2988341211 
PubMed: 33406599
DOI: 10.3390/md19010017
Domínguez-Bocanegra, A. R., Legarreta, I. G., Jeronimo, F. M. 2004 Influence of environmental and nutritional factors in the production of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 92, 209-214.
Keywords: Haematococcus; Astaxanthin production; Light intensity; Aeration
Strain(s): 144 
PubMed: 14693455
DOI: 10.1016/j.biortech.2003.04.001
Domínguez-Bocanegra, A. R., Ponce-Noyola, T., Torres-Muñoz, J. A. 2007 Astaxanthin production by Phaffia rhodozyma and Haematococcus pluvialis: a comparative study. Appl. Microbiol. Biotechnol., 75, 783-791.
Keywords: Haematococcus pluvialis; Phaffia rhodozyma; Astaxanthin synthesis; Coconut milk
Strain(s): 144 
PubMed: 17333170
DOI: 10.1007/s00253-007-0889-9
Domínguez-Martín, M. A., Gómez-Baena, G., Díez J., López-Grueso, M. J., Beynon, R. J., García-Fernández, J. M. 2017 Quantitative proteomics shows extensive remodeling induced by nitrogen limitation in Prochlorococcus marinus SS120. mSystems., 2, e00008-17 (article ID).
Keywords: marine cyanobacteria; nitrogen limitation; nitrogen metabolism; prochlorococcus; quantitative proteomics
Strain(s): 2880 
PubMed: 28593196
DOI: 10.1128/mSystems.00008-17
Donia, M. S., Schmidt, E. W. 2011 Linking chemistry and genetics in the growing cyanobactin natural products family. Chem. Biol., 18, 508-519.
Strain(s): 596 
PubMed: 21513887
DOI: 10.1016/j.chembiol.2011.01.019
Dorantes-Aranda, J. J., Nichols, P. D., Waite, T. D., Hallegraeff, G. M. 2013 Strain variability in fatty acid composition of Chattonella marina (Raphidophyceae) and its relation to differing ichthyotoxicity toward rainbow trout gill cells. J. Phycol., 2, 427-438.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 118 
PubMed: 27008528
DOI: 10.1111/jpy.12053
Dorrell, R. G., Azuma, T., Nomura, M., Audren de Kerdrel, G., Paoli, L., Yang, S., Bowler, C., Ishii, K.-I., Miyashita, H., Gile, G. H., Kamikawa, R. 2019 Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc. Natl. Acad. Sci. U. S. A., 116, 6914-6923.
Keywords: heterotrophy; ochrophyte; phylogenomics; dual targeting; protist
Strain(s): 1846 
PubMed: 30872488
DOI: 10.1073/pnas.1819976116
Dorrell, R. G., Drew, J., Nisbet, R. E., Howe, C. J. 2014 Evolution of chloroplast transcript processing in Plasmodium and its chromerid algal relatives. PLoS Genet., 10, e1004008 (article ID).
Strain(s): 4391 
PubMed: 24453981
DOI: 10.1371/journal.pgen.1004008
Dreher, T. W., Davis, E. W., Mueller, R. S., Otten, T. G. 2021 Comparative genomics of the ADA clade within the Nostocales. Harmful Algae, 104, 102037 (article ID).
Keywords: Dolichospermum; Aphanizomenon; Anabaena; Mobilome; Genome synteny; Cyanotoxin genes
Strain(s): 8081806 
PubMed: 34023075
DOI: 10.1016/j.hal.2021.102037
Driscoll, C. B., Meyer, K. A., Šulčius, S., Brown, N. M., Dick, G. J., Cao, H., Gasiūnas, G., Timinskas, A., Yin, Y., Landry, Z. C., Otten, T. G., Davis, T. W., Watson, S. B., Dreher, T. W. 2018 A closely-related clade of globally distributed bloom-forming cyanobacteria within the Nostocales. Harmful Algae, 77, 93-107.
Keywords: Genomics; Metagenomics; Filamentous cyanobacteria
Strain(s): 81 
PubMed: 30005805
DOI: 10.1016/j.hal.2018.05.009
Du, HW., Yang, LY., Wu, J., Xiao, L., Wang, XL., Jiang, LJ. 2012 Simultaneous removal of phosphorus and nitrogen in a sequencing batch biofilm reactor with transgenic bacteria expressing polyphosphate kinase. Appl. Microbiol. Biotechnol., 96, 265-272.
Keywords: Poly-phosphate kinase gene; Pseudomonas putida; Sequencing batch biofilm reactor; Phosphorus removal; Nitrogen removal
Strain(s): 843 
PubMed: 22218771
DOI: 10.1007/s00253-011-3839-5
Dufresne, A., Garczarek, L., Partensky, F. 2005 Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol., 6, R14 (article ID).
Strain(s): 28802887 
PubMed: 15693943
DOI: 10.1186/gb-2005-6-2-r14
Dulić, T., Svirčev, Z., Palanački Malešević, T., Faassen, E. J., Savela, H., Hao, Q., Meriluoto, J. 2022 Assessment of common cyanotoxins in cyanobacteria of biological loess crusts. Toxins, 14, 215 (article ID).
Keywords: cyanotoxins; biocrusts; loess; terrestrial cyanobacteria; sedimentary biosignatures; land restoration
Strain(s): 107 
PubMed: 35324712
DOI: 10.3390/toxins14030215
Duque, P., Vieira, C. P., Vieira, J. 2022 Advances in novel animal Vitamin C biosynthesis pathways and the role of prokaryote-based inferences to understand their origin. Genes, 13, 1917 (article ID).
Keywords: ascorbic acid; evolution; synthesis; aldonolactone oxidoreductases; insects; nematodes; prokaryotes
Strain(s): 267 
PubMed: 36292802
DOI: 10.3390/genes13101917
Dwi, S., Hirata, K., Asada, Y., Miyamoto, K. 2001 Utilization of cyanobacterial biomass from water bloom for bioproduction of lactic acid. World J. Microbiol. Biotech., 17, 259-264.
Keywords: cyanobacterium; CO2 supplementation; lactic acid; Lactobacillus agilis; L. amylovorus; L. ruminis; starch; water bloom
Strain(s): 2344 
DOI: 10.1023/A:1016638619
Dziga, D., Tokodi, N., Backović, D. D., Kokociński, M., Antosiak, A., Puchalski, J., Strzałka, W., Madej, M., Meriluoto, J., Svirčev, Z. 2019 The effect of a combined hydrogen peroxide-MlrA treatment on the phytoplankton community and microcystin concentrations in a mesocosm experiment in Lake Ludoš. Toxins, 11, 725 (article ID).
Keywords: microcystin; biodegradation; hydrogen peroxide; treatment; cyanobacteria; bloom
Strain(s): 107 
PubMed: 31835838
DOI: 10.3390/toxins11120725
Edvardsen, B., Eikrem, W., Shalchian-Tabrizi, K., Riisberg, I., Johnsen, G., Naustvoll, L., Throndsen, J. 2007 Verrucophora farcimen gen. et sp nov (Dictyochophyceae, Heterokonta) - A bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway. J. Phycol., 43, 1054-1070.
Keywords: carotenoids; Chattonella; Dictyochophyceae; harmful algae; LSU rDNA; new taxon; phylogeny; SSU rDNA; ultrastructure
Strain(s): 670 
DOI: 10.1111/j.1529-8817.2007.00390.x
Edvardsen, B., Eikrem, W., Throndsen, J., Sáez, A. G., Probert, I., Medlin, L. K. 2011 Ribosomal DNA phylogenies and a morphological revision provide the basis for a revised taxonomy of the Prymnesiales (Haptophyta). Eur. J. Phycol., 46, 202-228.
Keywords: Chrysochromulinaceae; Haptophyta; phylogeny; phytoplankton; Prymnesiales; Pseudohaptolina arctica; ribosomal DNA; taxonomy
Strain(s): 13331393 
DOI: 10.1080/09670262.2011.594095
Edwin, N., Akhwale, J. K., Mwirichia, R. 2019 Phylogenetic and morphological diversity of culturable cyanobacteria from Lake Magadi in Kenya. Afr. J. Bio. Sc., 1, 24-31.
Keywords: Cyanobacteria; Soda lakes; Extremophiles; Lake Magadi
Strain(s): 208 
DOI: 10.33472/AFJBS.1.4.2019.24-31
Ehara, M., Kitayama, T., Watanabe, K. I., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1999 Comprehensive molecular phylogenetic analysis of a heterokont alga (NIES 548) using genes from all three cellular compartments. Phycol. Res., 47, 225-231.
Keywords: cytochrome oxydase subunit I; Phaeophyceae; Tribonema; Xanthophyceae
Strain(s): 548 
DOI: 10.1046/j.1440-1835.1999.00166.x
Ehara, M., Watanabe, K. I., Kawai, H., Inagaki, Y., Hayashi-Ishimaru, Y., Ohama, T. 1998 Distribution of the mitochondrial deviant genetic code AUA for methionine in heterokont algae. J. Phycol., 34, 1005-1008.
Keywords: cytochrome oxydase subunit I; deviant genetic code; heterokont algae; Phaeophyceae; Xanthophyceae
Strain(s): 1 
DOI: 10.1046/j.1529-8817.1998.341005.x
Ehara, T., Ogasawara, Y., Osafune, T. 1990 Behavior of chloroplast nucleoids during the cell cycle of Chlamydomonas reinhardtii (Chlorophyta) in synchronized culture. J. Phycol., 26, 317-323.
Keywords: cell cycle; Chlamydomons; chloroplast division; DAPI; nucleoid
Strain(s): 2235 
DOI: 10.1111/j.0022-3646.1990.00317.x
Ehara, T., Osafune, T., Hase, E. 1985 Interactions between the nucleus and cytoplasmic organelles durihg the cell cycle of Euglena gracilis in synchronized cultures. III. Associations between the nucleus and chloroplasts at an early stage of the cell cycle under photoorganotrophic conditions (part II). Plant Cell Physiol., 26, 1155-1165.
Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; Euglena gracilis; three-dimensional chloroplast model
Strain(s): 48 
Ehara, T., Osafune, T., Hase, E. 1990 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in synchronized cultures. Exp. Cell Res., 190, 104-112.
Strain(s): 48 
DOI: 10.1016/0014-4827(90)90150-9
Ehara, T., Shihira-Ishikawa, I., Osafune, T., Hase, E., Ohkuro, I. 1975 Some structural characteristics of chloroplast degeneration in cells of Euglena gracilis Z during their heterotrophic growth in darkness. J. Electron Microscopy, 24, 253-261.
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a049978
Ehara, T., Sumida, S., Osafune, T. 1988 Dynamic morphological changes of organelles in Euglena gracilis Z. J. Tokyo Med. Coll., 46, 420-431.
Strain(s): 48 
Ehara, T., Sumida, S., Osafune, T., Hase, E. 1984 Interactions between the nucleus and cytoplasmic organelles during the cell cycle of Euglena gracilis in cynchronized cultures. I. Associations between the nucleus and chloroplasts at an early stage in the cell cycle under photoorganotrophic conditions (Part I). Plant Cell Physiol., 25, 1133-1146.
Keywords: cell cycle; chloroplast-nucleus association; chloroplast-nucleoid; chromosome; Euglena gracilis
Strain(s): 48 
Eikrem, W., Romari, K., Latasa, M., Le Gall, F., Throndsen, J., Vaulot, D. 2004 Florenciella parvula gen. et sp. nov. (Dictyochophyceae, Heterokontophyta), a small flagellate isolated from the English Channel. Phycologia, 43, 658-668.
Strain(s): 2684 
DOI: 10.2216/i0031-8884-43-6-658.1
Eio, E. J., Kawai, M., Niwa, C., Ito, M., Yamamoto, S., Toda, T. 2015 Biodegradation of bisphenol A by an algal-bacterial system. Environ. Sci. Pollut. Res., 22, 15145–15153.
Keywords: Algal-bacterial system; Bacterial consortium; Biodegradation; Bisphenol A; Inhibition; Photosynthetic oxygen
Strain(s): 2168 
PubMed: 26013738
DOI: 10.1007/s11356-015-4693-2
Eisentraeger, A., Dott, W., Klein, J., Hahn, S. 2003 Comparative studies on algal toxicity testing using fluorometric microplate and Erlenmeyer flask growth-inhibition assays. Ecotox. Environ. Safe., 54, 346-354.
Keywords: Algal growth-inhibition assay; Algal quantification; In vivo chlorophyll fluorescence; Testing volumina; Microplate; Evaluation parameters; Toxicological endpoints; EC value; Reference toxicants
Strain(s): 4282 
PubMed: 12651191
DOI: 10.1016/S0147-6513(02)00099-4
El Alaoui, S., Diez, J., Toribio, F., Gómez-Baena, G., Dufresne, A., García-Fernández, J. M. 2003 Glutamine synthetase from the marine cyanobacteria Prochlorococcus spp.; characterization, phylogeny and response to nutrient limitation. Environ. Microbiol., 5, 412-423.
Strain(s): 28802887 
PubMed: 12713467
DOI: 10.1046/j.1462-2920.2003.00433.x
Eliáš, M. Neustupa, J. 2009 Pseudomarvania, gen. nov. (Chlorophyta, Trebouxiophyceae). a new genus for "budding" subaerial green algae Marvania aerophytica Neustupa et Šejnohová and Stichococcus ampulliformis Handa. Fottea, 9, 169-177.
Keywords: evolution; Marvania; Stichococcus; phylogeny; Trebouxiophyceae; 18S rRNA
Strain(s): 996 
DOI: 10.5507/fot.2009.017
Endo, B., Fujii, T., Kamiya, Y., Sekimoto, H. 1997 Analysis of genomic sequences encoding a sex pheromone from the Closterium peracerosum-strigosum-littorale complex. J. Plant Res., 110, 463-467.
Keywords: cis-element; Closterium; genomic DNA; protoplast-release- inducing protein (PR-IP); sex pheromone; transcription
Strain(s): 6768 
DOI: 10.1007/BF02506807
Endo, H., Yoshida, M., Uji, T., Saga, N., Inoue, K., Nagasawa, H. 2016 Stable nuclear transformation system for the coccolithophorid alga Pleurochrysis carterae. Sci Rep, 6, 22252 (article ID).
Strain(s): 4509 
PubMed: 26947136
DOI: 10.1038/srep22252
Engesmo, A., Strand, D., Gran-Stadniczeñko, S., Edvardsen, B., Medlin, LK., Eikrem, W. 2018 Development of a qPCR assay to detect and quantify ichthyotoxic flagellates along the Norwegian coast, and the first Norwegian record of Fibrocapsa japonica (Raphidophyceae). Harmful Algae, 75, 105-117.
Keywords: Karenia mikimotoi; Karlodinium veneficum; Heterosigma akashiwo; Molecular monitoring; rDNA; 454 high throughput environmental; sequencing; SEM
Strain(s): 15 
PubMed: 29778220
DOI: 10.1016/j.hal.2018.04.007
Erata, M. & Chihara, M. 1987 Cryptomonads from the Sugadaira-Moor, Central Japan. Bull. Sugadaira Mont. Res. Center, Univ. Tsukuba, 8, 57-69 (in Japanese with English summary).
Strain(s): 706713714715 
Erata, M. & Chihara, M. 1989 Re-examination of Pyrenomonas and Rhodomonas (Class Cryptophyceae) through ultrastructural survey of red pigmented cryptomonads. Bot. Mag. Tokyo, 102, 429-443.
Keywords: nucleomorph; periplastidal compartment; Pyrenomonas; Rhodomonas
Strain(s): 697698699700701702705706 
DOI: 10.1007/BF02488125
Erata, M. & Chihara, M. 1991 Cryptomonads of Japan (2) three species of Chroomonas. J. Jpn. Bot., 66, 7-11.
Strain(s): 706707708709710712713714727 
Erata, M., Kubota, M., Takahashi, T., Inouye, I., Watanabe, M. 1995 Ultrastructure and phototactic action spectra of two genera of cryptophyte flagellate algae, Cryptomonas and Chroomonas. Protoplasma, 188, 258-266.
Keywords: action spectrum; Chroomonas; Cryptomonas; cryptophyte; eyespot; phototaxis; phycobilin
Strain(s): 707714 
DOI: 10.1007/BF01280378
Erhard, M., von Döhren, H., Jungblut, P. 1997 Rapid typing and elucidation of new secondary metabolites of intact cyanobacteria using MALDI-TOF mass spectrometry. Nat. Biotechnol., 15, 906-909.
Keywords: cyanobacteria; secondary metabolites; MALD-TOF; PSD; microcystin; anabaenopeptolins
Strain(s): 90 
PubMed: 9306409
DOI: 10.1038/nbt0997-906
Erratt, K. J., Creed, I. F., Trick, C. G. 2020 Differential drawdown of ammonium, nitrate, and urea by freshwater chlorophytes and Cyanobacteria. J. Phycol., 56, 458-468.
Strain(s): 8890102843 
PubMed: 31875965
DOI: 10.1111/jpy.12960
Fang, L., Leliaert, F., Novis, P. M., Zhang, Z., Zhu, H., Liu, G., Penny, D., Zhong, B. 2018 Improving phylogenetic inference of core Chlorophyta using chloroplastsequences with strong phylogenetic signals and heterogeneous models. Mol. Phylogenet. Evol., 127, 248-255.
Keywords: Green algae; Phylogenomics; GC-heterogeneous sites; Heterogeneous models; Phylogenetic signals
Strain(s): 15453718371838 
PubMed: 29885933
DOI: 10.1016/j.ympev.2018.06.006
Faria, D. G., Kato, A., de la Peña, M., Suda, S. 2011 Taxonomy and phylogeny of Nephroselmis clavistella sp. nov. (Nephroselmidophyceae, Chlorophyta). J. Phycol., 6, 1388-1396.
Keywords: molecular phylogeny; morphology; Nephroselmidophyceae; Nephroselmis clavistella sp. nov.; scale morphology; taxonomy; ultrastructure
Strain(s): 2867 
PubMed: 27020363
DOI: 10.1111/j.1529-8817.2011.01059.x
Fawley, M. W. 1991 Disjunct distribution of the xanthophyll loroxanthin in the green algae (Chlorophyta). J. Phycol., 27, 544-548.
Keywords: carotenoids; Chlorophyta; high-performance liquid chromatography; loroxanthin; xanthophylls
Strain(s): 2285 
DOI: 10.1111/j.0022-3646.1991.00544.x
Fawley, M. W., Fawley, K. P., Cahoon, A. B. 2021 Finding needles in a haystack—Extensive diversity in the eustigmatophyceae revealed by community metabarcode analysis targeting the rbcL gene using lineage-directed primers. J. Phycol., 57, 1636-1647.
Keywords: algal diversity; community structure; environmental DNA; Eustigmatophyceae; metabar-coding; species diversity
Strain(s): 2860 
PubMed: 34218435
DOI: 10.1111/jpy.13196
Featherston, J., Arakaki, Y., Hanschen, E. R., Ferris, PJ., Michod, R. E., Olson, B. J. S. C., Nozaki, H., Durand P. M. 2018 The 4-celled Tetrabaena socialis nuclear genome reveals the essential components for genetic control of cell number at the origin of multicellularity in the volvocine lineage. Mol. Biol. Evol., 35, 855-870.
Keywords: Volvocines; multicellularity; Tetrabaena socialis; evolutionary genomics
Strain(s): 571 
PubMed: 29294063
DOI: 10.1093/molbev/msx332
Featherston, J., Arakaki, Y., Nozaki, H., Durand, P. M., Smith, D. R. 2016 Inflated organelle genomes and a circularmapping mtDNA probably existed at the origin of coloniality in volvocine green algae. Eur. J. Phycol., 51, 369-377.
Keywords: Genome expansion; green microalga; mitochondrial DNA; plastid DNA; Tetrabaena socialis; Volvocine algae
Strain(s): 571 
DOI: 10.1080/09670262.2016.1198830
Feinstein, T. N., Traslavina, R., Sun, M.-Y., Lin, S. 2002 Effects of light on photosynthesis, grazing, and population dynamics of the heterotrophic dinoflagellate Pfiesteria piscicida (Dinophyceae). J. Phycol., 38, 659-669.
Keywords: cannibalism; grazing; growth; kleptoplastidy; light; Pfiesteria piscicida
Strain(s): 1730 
DOI: 10.1046/j.1529-8817.2002.01175.x
Fekrat, F., Nami, B., Hejazi, M. A., Ghafari, M. R., Shahbazi, M. 2022 Correlation network analysis of metabolites reveals the role of nitrogen‑containing metabolic stressors in stimulating high‑value compounds biosynthesis in Arthrospira platensis. J. Appl. Phycol., 34, 1967–1982.
Keywords: Arthrospira platensis; Aspartic acid; Monosodium glutamate; Metabolic stress
Strain(s): 39 
DOI: 10.1007/s10811-022-02753-8
Feng, S., Liu, F., Zhu, S., Feng, P., Wang, Z., Yuan, Z., Shang, C., Chen, H. 2020 Performance of a microalgal-bacterial consortium system for the treatmentof dairy-derived liquid digestate and biomass production. Bioresour. Technol., 306, 123101 (article ID).
Keywords: Liquid digestate; C. vulgaris; Pollutant removal; Biomass production; Bacterial community analysis
Strain(s): 227 
PubMed: 32197188
DOI: 10.1016/j.biortech.2020.123101
Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A., Stitt, M., Mutwil, M. 2019 Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nat. Commun., 10, 737 (article ID).
Strain(s): 2285 
PubMed: 30760717
DOI: 10.1038/s41467-019-08703-2
Ferris, P., Olson, B. J., De Hoff, P. L., Douglass, S., Casero, D., Prochnik, S., Geng, S., Rai, R., Grimwood, J., Schmutz, J., Nishii, I., Hamaji, T., Nozaki, H., Pellegrini, M., Umen,J. G. 2010 Evolution of an expanded sex-determining locus in Volvox. Science, 328, 351-354.
Strain(s): 732733 
PubMed: 20395508
DOI: 10.1126/science.1186222
Fitriana, H.-N., Lee, S.-Y., Choi, S.-A., Lee, J.-Y., Kim, B.-L., Lee, J.-S., Oh, Y.-K. 2021 Electric stimulation of astaxanthin biosynthesis in Haematococcus pluvialis. Appl. Sci., 11, 3384 (article ID).
Keywords: microalgae; Haematococcus pluvialis; astaxanthin; electric treatment; stimulation; stress
Strain(s): 144 
DOI: 10.3390/app11083348
Fitriyah, F., Faramitha, Y., Sari, D. A., Kresnawaty, I., Panji, T., Santoso, D. 2020 Molecular identification of species in genus Nannochloropsis using Ribulose-1,5-Biphosphate carboxylase/oxygenase large subunit (rbcL) gene barcode. Eurasia. J. Biosci., 14, 7855-7860.
Keywords: DNA barcode; Microalgae; rbcL
Strain(s): 21452587 
Fitriyah, F., Faramitha, Y., Sari, D. A., Kresnawaty, I., Panji, T., Santoso, D. 2021 Improved direct lysis PCR amplification method of microalgal culture for sequencing and species identification. IOP Conf. Ser.: Earth Environ. Sci., 948, 012013 (article ID).
Strain(s): 2587 
DOI: 10.1088/1755-1315/948/1/012013
Fjiwara, T. & Ohnuma, M. 2018 Procedures for transformation and their applications in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 87-103.
Keywords: Transformation; Homologous recombination; Gene targeting; biotechnology; Algae; Genetic engineering
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_7
Flores, D. C., Fricke, M., Wesp, V., Desirò, D., Kniewasser, A., Hölzer, M., Marz, M., Mittag, M. 2021 A marine Chlamydomonas sp. emerging as an algal model. J. Phycol., 57, 54-69.
Strain(s): 882220222042207221122182220222322292236224122422248 
PubMed: 33043442
DOI: 10.1111/jpy.13083
Forni, C., Telo, F. R., Caiola, M. G. 1997 Comparative analysis of the polysaccharides produced by different species of Microcystis (Chroococcales, Cyanophyta) . Phycologia, 36, 181-185.
Strain(s): 8798102112 
DOI: 10.2216/i0031-8884-36-3-181.1
Foy, R. H. & Gibson, C. E. 1982 Photosynthetic characteristics of planktonic blue-green algae: the response of twenty strains grown under high and low light. Br. Phycol. J., 17, 169-182.
Strain(s): 596 
DOI: 10.1080/00071618200650171
Franklin, D. J., Steinke, M., Young, J., Probert, I., Malin, G. 2010 Dimethylsulphoniopropionate (DMSP), DMSP-lyase activity (DLA) and dimethylsulphide (DMS) in 10 species of coccolothophore. Mar. Ecol. Prog. Ser., 410, 13-23.
Keywords: Marine sulphur cycle; Calcifying haptophytes; Biogeochemistry; Emiliania; Gephyrocapsa; Calcidiscus; Coccolithophores
Strain(s): 2694269626972707 
DOI: 10.3354/meps08596
Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H. 2017 Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton. ACS Omega, 2, 3175–3182.
Keywords: Geological materials; Microbiology; Separation science; Toxicology; Water pollution
Strain(s): 324 
PubMed: 30023687
DOI: 10.1021/acsomega.7b00081
Fujii, K. 2012 Process integration of supercritical carbon dioxide extraction and acid treatment for astaxanthin extraction from a vegetative microalga. Food Bioprod. Process., 90, 762-766.
Keywords: Supercritical carbon dioxide; Microalgae; Monoraphidium sp.; Astaxanthin; Chlorophyll
Strain(s): 2267 
DOI: 10.1016/j.fbp.2012.01.006
Fujii, K., Imazato, E., Nakashima, H., Ooi, O., Saeki, A. 2006 Isolation of the non-fastidious microalga with astaxanthin-accumulating property and its potential for application to aquaculture. Aquaculture, 261, 285-293.
Keywords: Astaxanthin; Aquaculture; Microalgae; Monoraphidium
Strain(s): 2267 
DOI: 10.1016/j.aquaculture.2006.07.014
Fujii, K., Matsunobu, S., Takahashi, Y. 2014 Characterization of the new microalgal strains, Oogamochlamys spp., and their potential for biofuel production. Algal Res., 5, 164-170.
Keywords: Lipid; Biofuel; Microalgae; Oogamochlamys
Strain(s): 36433644 
DOI: 10.1016/j.algal.2014.08.003
Fujii, K., Nakajima, H, Anno, Y. 2008 Potential of Monoraphidium sp. GK12 for energy-saving astazanthin production. J. Chem. Tech. Biotechnol., 83, 1578-1584.
Keywords: astaxanthin; microalgae; Monoraphidium sp.; outdoor cultivation; energy-saving technology
Strain(s): 2267 
DOI: 10.1002/jctb.1978
Fujii, K., Nakashima, H., Hashidzume, Y. 2010 Isolation of folate-producing microalgae, from oligotrophic ponds in Yamaguchi, Japan. J. Appl. Microbiol., 108, 1421-1429.
Keywords: B-vitamins; Chlamydomonas; Chlorococcum; folate; microalgae; thiamine
Strain(s): 217222352848284928502851 
PubMed: 19796121
DOI: 10.1111/j.1365-2672.2009.04542.x
Fujii, K., Nakashima, H., Hashidzume, Y., Uchiyama, T., Mishiro, K., Kadota, Y. 2010 Potential use of the astaxanthin-producing microalga, Monoraphidium sp. GK12, as a functional aquafeed for prawns. J. Appl. Phycol., 22, 363-369.
Keywords: Astaxanthin; Vitamin; Unsaturated fatty acid; Microalgae; Monoraphidium; Functional aquafeed
Strain(s): 2267 
DOI: 10.1007/s10811-009-9468-z
Fujii, K., Yahashi, Y., Nakano, T., Imanishi, S., Baldia, S. F., Harada, K. 2002 Simultaneous detection and determination of the absolute configuration of thiazole-containing amino acids in a peptide. Tetrahedron, 58, 6873-6879.
Keywords: microcyclamide; absolute configuration; advanced Marfey's method; thiazole-containing (TZL-) amino acid
Strain(s): 101298 
DOI: 10.1016/S0040-4020(02)00748-2
Fujii, M., Sato, Y., Ito, H., Masago, Y., Omura, T. 2012 Monosaccharide composition of the outer membrane lipopolysaccharide and O-chain from the freshwater cyanobacterium Microcystis aeruginosa NIES-87. J. Appl. Microbiol., 113, 896-903.
Keywords: chemical characterization, lipopolysaccharide, Microcystis aeruginosa, O-chain
Strain(s): 87 
DOI: 10.1111/j.1365-2672.2012.05405.x
Fujisawa, T., Narikawa, R., Okamoto, S., Ehira, S., Yoshimura, H., Suzuki, I., Masuda, T., Mochimaru, M., Takaichi, S., Awai, K., Sekine, M., Horikawa, H., Yashiro, I., Omata, S., Takarada, H., Katano, Y., Kosugi, H., Tanikawa, S., Ohmori, K., Sato, N.,Ikeuchi, M., Fujita, N., Ohmori, M. 2010 Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39. DNA Res., 17, 85-103.
Keywords: cyanobacteria; Arthrospira; health supplement; genome; cAMP
Strain(s): 39 
PubMed: 20203057
DOI: 10.1093/dnares/dsq004
Fujise, D., Tsuji, K., Fukushima, N., Kawai, K., Harada, K. 2010 Analytical aspects of cyanobacterial volatile organic compounds for investigation of their production behavior. J. Chromatogr. A, 1217, 6122-6125.
Keywords: Cyanobacteria; Volatile organic compounds; Analysis; b-Cyclocitral; 2-Methyl-1-butanol; 3-Methyl-1-butanol; SPME
Strain(s): 87298 
DOI: 10.1016/j.chroma.2010.07.008
Fujita, K. 1958 The metabolism of acetate in Chlorella cells. J. Biochem., 46, 253-268.
Strain(s): 2170 
Fujita, Y. 1974 The light-induced oxidation-reduction reaction of cytochrome b-559 in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 15, 861-874.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075075
Fujita, Y. 1975 Further investigation of the light-induced cytochrome b-559 reaction in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 16, 1037-1048.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075223
Fujita, Y. 1976 The C550 photoresponse at room temperature observed in membrane fragments of the blue-green alga Anabaena variabilis. Plant Cell Physiol., 17, 187-191.
Strain(s): 23 
DOI: 10.1093/oxfordjournals.pcp.a075258
Fujita, Y. & Hattori, A. 1960 Formation of phycoerythrin in pre-illuminated cells of Tolypothrix tenuis with special reference to nitrogen metabolism. Plant Cell Physiol., 1, 281-292.
Strain(s): 37 
Fujita, Y. & Hattori, A. 1960 Effect of chromatic lights on phycobilin formation in a blue-green alga, Tolypothrix tenuis. Plant Cell Physiol., 1, 293-303.
Strain(s): 37 
Fujita, Y. & Hattori, A. 1962 Changes in composition of cellular material during formation of phycobilin chromoproteids in a blue-green alga, Tolypothrix tenuis. J. Biochem., 52, 38-42.
Strain(s): 37 
PubMed: 13895763
Fujita, Y. & Hattori, A. 1962 Photochemical interconversion between precursors of phycobilin chromoproteids in Tolypothrix tenuis. Plant Cell Physiol., 3, 209-220.
Strain(s): 37 
Fujita, Y. & Hattori, A. 1962 Preliminary note on a new phycobilin pigment isolated from blue-green algae. J. Biochem., 51, 89-91.
Strain(s): 1937 
PubMed: 13895764
Fujita, Y. & Hattori, A. 1963 Action spectrum of light-induced nitrite reduction in Anabaena cylindrica. J. Gen. Appl. Microbiol., 9, 257-265.
Strain(s): 19 
Fujita, Y. & Hattori, A. 1963 Effects of second chromatic illumination on phycobilin chromo-protein formation in chromatically preillumi-nated cells of Tolypothrix tenuis. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 431-440.
Strain(s): 37 
Fujita, Y. & Hattori, A. 1963 Occurrence of a purple bile pigment in phycoerythrin-rich cells of the blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 9, 253-256.
Strain(s): 37 
Fujita, Y. & Murano, F. 1967 Photochemical activities of sonicated lamellae of spinach chloroplasts with special reference to the action of CRS (cytochrome c reducing substance). Plant Cell Physiol., 8, 269-281.
Strain(s): 19 
Fujita, Y. & Murano, F. 1968 Occurrence of back flow of electrons against the action of photochemical system I in sonicated lamellar fragments. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 161-169.
Strain(s): 19 
Fujita, Y. & Myers, J. 1966 Some properties of the cytochrome C reducing substance, a factor for light-induced redox reaction of cytochrome C in photosynthetic lamellae. Plant Cell Physiol., 7, 599-606.
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a079212
Fujita, Y. & Suzuki, R. 1971 Studies on the Hill reaction of membrane fragments of blue-green algae I. Stabilizing effect of various media on the 2,6-dichlorophenol indophenol-Hill activity of membrane fragments obtained from Anabaena cylindrica and Anabaena variabilis. Plant Cell Physiol., 12, 641-651.
Strain(s): 1923 
Fujita, Y. & Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae III. Fluorescence characteristics of membrane fragments of Anabaena variabilis and Anabaena cylindrica. Plant Cell Physiol., 14, 249-260.
Strain(s): 1923 
Fujita, Y. & Suzuki, R. 1973 Studies on the Hill reaction of membrane fragments of blue-green algae IV. Carotenoid photobleaching induced by photosystem II action. Plant Cell Physiol., 14, 261-273.
Strain(s): 1923 
Fujita, Y. & Tsuji, T. 1968 Photochemically active chromoprotein isolated from the blue-green alga Anabaena cylindrica. Nature, 219, 1270-1271.
Strain(s): 19 
PubMed: 5677430
DOI: 10.1038/2191270a0
Fujita, Y., Ohama, H., Hattori, A. 1964 Hydrogenase activity of cell-free preparation obtained from the blue-green alga, Anabaena cylindrica. Plant Cell Physiol., 5, 305-314.
Strain(s): 19 
Fujita, Y., Pjon, C.-J., Suzuki, R. 1974 Studies on the Hill reaction of membrane fragments of blue-green algae V. A correlation between the solubilization of a photochemically active chromoprotein (ACP) and the inactivation of photosystem II activity in membrane fragments of Anabaena cylindrica. Plant Cell Physiol., 15, 779-787.
Strain(s): 19 
Fujiwara, S., Fukuzawa, H., Tachiki, A., Miyachi, S. 1990 Structure and differential expression of two genes encoding carbonic anhydrase in Chlamydomonas reinhardtii. Proc. Nati. Acad. Sci. U. S. A., 87, 9779-9783.
Strain(s): 2235 
PubMed: 2124702
DOI: 10.1073/pnas.87.24.9779
Fujiwara, T., Hirooka, S., Mukai, M., Ohbayashi, R., Kanesaki, Y., Watanabe, S., Miyagishima, S. 2019 Integration of a Galdieria plasma membrane sugar transporter enables heterotrophic growth of the obligate photoautotrophic red alga Cynanidioschyzon merolae. Plant Direct, 3, e00134 (article ID).
Keywords: Cyanidioschyzon merolae; Galdieria sulphuraria; heterotroph; mixotroph; plasma membrane sugar transporter
Strain(s): 3377 
PubMed: 31245772
DOI: 10.1002/pld3.134
Fujiwara, T., Kanesaki, Y., Hirooka, S., Era, A., Sumiya, N., Yoshikawa, H., Tanaka, K., Miyagishima, S. 2015 A nitrogen source-dependent inducible and repressible gene expression system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 6, 657 (article ID).
Keywords: algae; plants; homologous recombination; conditional knockdown; gene inducible system
Strain(s): 3377 
PubMed: 26379685
DOI: 10.3389/fpls.2015.00657
Fujiwara, T., Kuroiwa, H., Yagisawa, F., Ohnuma, M., Yoshida, Y., Yoshida, M., Nishida, K., Misumi, O., Watanabe, S., Tanaka, K., Kuroiwa, T. 2010 The coiled-coil protein VIG1 is essential for tethering vacuoles to mitochondria during vacuole inheritance of Cyanidioschyzon merolae. Plant Cell, 22, 772-781.
Strain(s): 3377 
PubMed: 20348431
DOI: 10.1105/tpc.109.070227
Fujiwara, T., Misumi, O., Tashiro, K., Yoshida, Y., Nishida, K., Yagisawa, F., Imamura, S., Yoshida, M., Mori, T., Tanaka, K., Kuroiwa, T. 2009 Peirodic gene expression patterns duiring the highly synchronized cell nucleus and organelle division cycles in the unicellular red alga Cyanidioschyzon merolae. DNA Res., 16, 59-72.
Keywords: cell cycle; microarray; mitochondria-plastid division genes; organelle division genes; Cyanidioschyzon merolae
Strain(s): 3377 
PubMed: 19147531
DOI: 10.1093/dnares/dsn032
Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y. 2017 Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae. Front. Plant Sci., 8, e343 (article ID).
Keywords: algae, plants; photosynthetic eukaryotes; genetic modification; multiple transformation; chloramphenicol; CAT selection marker
Strain(s): 3377 
PubMed: 28352279
DOI: 10.3389/fpls.2017.00343
Fukuda, S., Iwamoto, K., Atsumi, M., Yokoyama, A., Nakayama, T., Ishida, K-I., Inouye, I., Shiraiwa, Y. 2014 Global searches for microalgae and aquatic plants that can eliminate radioactive cesium, iodine and strontium from the radio-polluted aquatic environment: a bioremediation strategy. J. Plant Res., 127, 79-89.
Keywords: Algal phytoremediation; Bioaccumulation; Radiopollution; Radionuclide elimination; Radioactive cesium; The Fukushima 1 Nuclear Power Plant accident
Strain(s): 24367115516020323324632933339140541744048750352953153854855358759767872780584385993199510031012101510171031104410451259132613311377138213881411143514391440144114421458172818261831183318401846186218651956213121442146214721502175217621852268232523412352237724122437285428552856285828592860 
PubMed: 24346654
DOI: 10.1007/s10265-013-0596-9
Fukuda, S., Suzuki, I., Hama, T., Shiraiwa, Y. 2011 Compensatory response of the unicellular-calcifying alga Emiliania huxleyi (Coccolithophoridales, Haptophyta) to ocean acidification. J. Oceanogr., 67, 17-25.
Keywords: Alkalization; Calcification; Coccolithophorid; Emiliania huxleyi; Inorganic carbon; Ocean acidification; pH change; pH effect; Photosynthesis; Respriration
Strain(s): 837 
DOI: 10.1007/s10872-011-0001-z
Fukuda, S., Suzuki, Y., Shiraiwa, Y. 2014 Difference in physiological responses of growth, photosynthesis and calcification of the coccolithophore Emiliania huxleyi to acidification by acid and CO2 enrichment. Photosynth. Res., 121, 299-309.
Keywords: Acidification; CO2 enrichment; Calcification; Emiliania huxleyi; pH effect; Photosynthesis
Strain(s): 837 
PubMed: 24500605
DOI: 10.1007/s11120-014-9976-9
Fukuda, S., Yamamoto, R., Iwamoto, K., Minoda, A. 2018 Cellular accumulation of cesium in the unicellular red alga Galdieria sulphuraria under mixotrophic conditions. J. Appl. Phycol., 30, 3057-3061.
Keywords: Bioremediation; Galdieria sulphuraria; Rhodophyceae; Radioactive cesium; Biological concentration
Strain(s): 3638 
DOI: 10.1007/s10811-018-1525-z
Fukumoto, R., Dohmae, N., Takio, K., Satoh, S., Fujii, T., Sekimoto, H. 2002 Purification and characterization of a pheromone that induces sexual cell division in the unicellular green alga Closterium ehrenbergii. Plant Physiol. Biochem., 40, 183-188.
Keywords: Closterium ehrenbergii; pheromone; sexual reproduction
Strain(s): 228229 
DOI: 10.1016/S0981-9428(01)01356-0
Fukumoto, R., Fujii, T., Sekimoto, H. 1997 Detection and evaluation of a novel sexual pheromone that induces sexual cell division of Closterium ehrenbergii (Chlorophyta). J. Phycol., 33, 441-445.
Keywords: Chlorophyta; Closterium ehrenbergii; conjugation; gametogenesis; gamete; pheromone; protoplast-release-inducing protein; sexual cell division
Strain(s): 228229 
DOI: 10.1111/j.0022-3646.1997.00441.x
Fukumoto, R., Fujii, T., Sekimoto, H. 1998 A newly identified chemotactic sexual pheromone from Closterium ehrenbergii. Sex. Plant Reprod., 11, 81-85.
Keywords: Closterium ehrenbergii; chemoattractant; conjugation; sexual pheromone; protoplast-release inducing protein
Strain(s): 228229 
DOI: 10.1007/s0049700501
Fukumoto, R., Fujii, T., Sekimoto, H. 2003 Cloning and characterization of a cDNA encoding a sexual cell division-inducing pheromone from a unicellular green alga Closterium ehrenbergii. J. Phycol., 39, 931-936.
Keywords: Closterium; conjugation; pheromone; sexual reproduction; RACE-PCR
Strain(s): 228229 
DOI: 10.1046/j.1529-8817.2003.03004.x
Fukumoto, T., Nishimura, T., Nagasawa, T., Kitajima, K., Iwamura, T. 1988 Exclusion chromatography with controlled-pore glass beads to isolate Chlorella chromatin and its applications. Anal. Biochem., 170, 463-471.
Strain(s): 2170 
PubMed: 3394945
DOI: 10.1016/0003-2697(88)90659-8
Fukuzawa, H., Fujiwara, S., Yamamoto, Y., Dionisio-Sese, M. L., Miyachi, S. 1990 cDNA cloning, sequence, and expression of carbonic anhydrase in Chlamydomonas reinhardtii: Regulation by environmental CO2 concentration. Proc. Nati. Acad. Sci. U. S. A., 87, 4383-4387.
Strain(s): 2235 
PubMed: 2112252
DOI: 10.1073/pnas.87.11.4383
Fukuzawa, H., Ishida, S., Miyachi, S. 1991 cDNA cloning and gene expression of carbonic anhydrase in Chlamydomonas reinhardtii. Can. J. Bot., 69, 1088-1096.
Keywords: photosynthesis; light regulation; zinc; CO2-concentrating mechanism; intracellular processing
Strain(s): 2235 
DOI: 10.1139/b91-139
Fuller, N. J., Campbell, C., Allen, D. J., Pitt, F. D., Le Gall, F., Vaulot, D., Scanlan, D. J. 2006 Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids. Aquat. Microb. Ecol., 43, 79-93.
Keywords: Photosynthetic picoeukaryotes; Plastid 16S rRNA; Arabian Sea; PCR
Strain(s): 25862588258926722673268726902693 
DOI: 10.3354/ame043079
Furihata, T., Pomprasirt, S., Sakurai, H. 1997 Characteristics of sulfite transport by Chlorella vulgaris. Plant Cell Physiol., 38, 398-403.
Keywords: Chlorella; plasma membrane; sulfite; transport
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a029182
Furusato, E., Asaeda, T., Manatunge, J. 2004 Tolerance for prolonged darkness of three phytoplankton species, Microcystis aeruginosa (Cyanophyceae), Scenedesmus quadricauda (Chlorophyceae), and Melosira ambigua (Bacillariophyceae). Hydrobiologia, 527, 153-162.
Keywords: algal bloom; artificial circulation; community succession; darkness tolerance; phytoplankton
Strain(s): 96298 
DOI: 10.1023/B:HYDR.0000043198.08168.d3
Gaget, V., Welker, M., Rippka, R., de Marsac, N. T. 2015 A polyphasic approach leading to the revision of the genus Planktothrix (Cyanobacteria) and its type species, P. agardhii, and proposal for integrating the emended valid botanical taxa, as well as three new species, Planktothrix paucivesiculata sp. nov.ICNP, Planktothrix tepida sp. nov.ICNP, Planktothrix serta sp. nov.ICNP, as genus and species names with nomenclatural standing under th ICNP. Syst. Appl. Microbiol., 38, 141-158.
Keywords: Polyphasic taxonomy; 16S rRNA gene; ITS; MLST; gyrB; rpoB; rpoC1; Planktothrix Anagnostidis & Komárek 1988ICN emend. gen. nov. ICNP
Strain(s): 9059281266 
DOI: 10.1016/j.syapm.2015.02.004
Galica, T., Borbone, N., Mareš, J., Kust, A., Caso, A., Esposito, G., Saurav, K., Hájek, J., Řeháková, K., Urajová, P., Costantino, V., Hrouzek, P. 2021 Cyanochelins, an overlooked class of widely distributed cyanobacterial siderophores, discovered by silent gene cluster awakening. Appl. Environ. Microbiol., 87, e0312820 (article ID).
Strain(s): 3755 
PubMed: 34132591
DOI: 10.1128/AEM.03128-20
Gao, J.-J., Zhang, L.. Peng, R.-H., Wang, B., Feng, H.-J., Li, Z.-J., Yao, Q.-H. 2021 Recombinant expression of Thermosynechococcus elongatus BP-1 glutathione S-transferase in Arabidopsis thaliana: an efficient tool for phytoremediation of thiocyanate. Biotechnol. Biotechnol. Equip., 34, 494-505.
Keywords: Thiocyanate; Thermosynechococcus elongatus BP-1; Arabidopsis thaliana; transgenic; enhance phytoremediation; glutathione S-transferase; degradation
Strain(s): 209821344103 
DOI: 10.1080/13102818.2020.1779127
Gao, S., Pittman, K., Edmundson, S., Huesemann, M., Greer, M., Louie, W., Chen, P., Nobles, D., Benemann, J., Crowe, B. 2023 A newly isolated alkaliphilic cyanobacterium for biomass production with direct air CO2 capture. J. CO2 Util., 69, 102399 (article ID).
Keywords: Alkaliphilic cyanobacteria; Biomass; Raceway pond; Direct air capture
Strain(s): 144 
DOI: 10.1016/j.jcou.2023.102399
Gaouda, H., Hamaji, T., Yamamoto, K., Kawai-Toyooka, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Nozaki, H., Smith, D. R. 2018 Exploring the limits and causes of plastid genome expansion in volvocine green algae. Genome Biol. Evol., 10, 2248-2254.
Keywords: Eudorina; genome expansion; mutational hazard hypothesis; Volvox; Yamagishiella
Strain(s): 378039823984 
PubMed: 30102347
DOI: 10.1093/gbe/evy175
Garcia, H. F. L. 2017 Mathematical modelling as a research tool in the cyanobacteria cultivation. PhD thesis, Friedrich-Alexander-Universität Erlangen-Nürnberg, Germany, 101 pp.
Strain(s): 39 
Garcia, N. S., Sexton, J., Riggins, T., Brown, J., Lomas, M. W., Martiny, A.C. 2018 High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions. Front. Microbiol., 9, 543 (article ID).
Strain(s): 2690 
PubMed: 29636735
DOI: 10.3389/fmicb.2018.00543
Gekeler, W., Grill, E., Winnacker, E.-L., Zenk, M. H. 1988 Algae sequester heavy metals via synthesis of phytochelatin complexes. Arch. Mikrobiol., 150, 197-202.
Strain(s): 687 
DOI: 10.1007/BF00425162
Gharaie Fathabad, S., Arumanayagam, A. S., Tabatabai, B., Chen, H., Lu, J., Sitther, V. 2019 Augmenting Fremyella diplosiphon cellular lipid content and unsaturated fatty acid methyl esters via sterol desaturase gene overexpression. Appl. Biochem. Biotechnol., 189, 1127-1140.
Keywords: Alkane; Biofuel; Cyanobacteria; Sterol desaturase; Transcript abundance
Strain(s): 210021073585 
PubMed: 31168708
DOI: 10.1007/s12010-019-03055-5
Ghosh, R., Makam, R., Krishnamurthy, V. 2018 Effect of critical parameters on biomass yield from Botryococcus braunii by Response surface methodology. Chem. Sci. Rev. Lett., 7, 409-420.
Keywords: Bio mass; Botryococcus Braunii; Microalgae; Response; Surface Methodology
Strain(s): 2199 
Giannelli, L., Yamada, H., Katsuda, T., Yamaji, H. 2015 Effects of temperature on the astaxanthin productivity and light harvesting characteristics of the green alga Haematococcus pluvialis. J. Biosci. Bioeng., 119, 345–350.
Keywords: Haematococcus pluvialis; Photobioreactor; Astaxanthin; Photosynthetic efficiency
Strain(s): 144 
PubMed: 25441445
DOI: 10.1016/j.jbiosc.2014.09.002
Giannelli, L., Yamaji, H., Katsuda, T. 2015 A numerical model for the quantification of light/dark cycles in microalgal cultures: Air-lift and bubble-column photobioreactor analysis by means of computational fluid dynamics. J. Chem. Eng. Jpn., 48, 61-71.
Keywords: Microalgae; Photobioreactor; Computational Fluid Dynamics; Flashing Light; Light Conversion Efficiency
Strain(s): 144 
DOI: 10.1252/jcej.14we093
Gile, G. H., Stern, R. F., James, E. R., Keeling, P. J. 2010 DNA barcoding of chlorarachniophytes using nucleomorph its sequences. J. Phycol., 46, 743-750.
Keywords: Bigelowiella; Chlorarachnion; culture collections; Gymnochlora; internal transcribed spacer; Lotharella; Norrisiella; Partenskyella
Strain(s): 62425842677 
DOI: 10.1111/j.1529-8817.2010.00851.x
Giordano, M., Goodman, C. A., Huang, F., Raven, J. A., Ruan, Z. 2022 A mechanistic study of the influence of nitrogen and energy availability on the NH4+ sensitivity of nitrogen assimilation in Synechococcus. J. Exp. Bot., 73, 5596-5611.
Keywords: Ammonium; cyanobacteria; glutamine synthetase; limitation; nitrate reductase; nitrite reductase; NtcA regulation; N metabolism
Strain(s): 25502042678439709812107213421352481254937093754375637574074 
PubMed: 35595516
DOI: 10.1093/jxb/erac219
Giovagnetti, V., Cataldo, M. L., Conversano, F., Brunet, C. 2010 Functional relation between growth, photosynthetic rate and regulation in the coastal picoeukaryote Phaeomonas sp. RCC 503 (Pinguiophyceae, Stramenopiles). J. Plankton Res., 32, 1501-1511.
Keywords: photoacclimation; picoeukaryote; xanthophyll cycle
Strain(s): 2693 
DOI: 10.1093/plankt/fbq074
Godo, T., Saki, Y., Nojiri, Y., Tsujitani, M., Sugahara, S., Hayashi, S., Kamiya, H., Ohtani, S., Seike, Y. 2017 Geosmin-producing Species of Coelosphaerium (Synechococcales, Cyanobacteria) in Lake Shinji, Japan. Sci Rep., 7, 41928 (article ID).
Strain(s): 4473 
PubMed: 28195147
DOI: 10.1038/srep41928
Goldstein, M. 1964 Speciation and mating behavior in Eudorina. J. Protozool., 11, 317-344.
Strain(s): 735 
DOI: 10.1111/j.1550-7408.1964.tb01762.x
Gómez, F., Qiu, D., Lopes, R.M., Lin, S. 2015 Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the Dinoflagellate Gambierdiscus (Dinophyceae). PLoS One, 10, e0119676 (article ID).
Strain(s): 3451 
PubMed: 25831082
DOI: 10.1371/journal.pone.0119676
Gómez-Lojero, C., Leyva-Castillo, L. E., Herrera-Salgado, P., Barrera-Rojas, J., Ríos-Castro, E., Gutiérrez-Cirlos, E. B. 2018 Leptolyngbya CCM 4, a cyanobacterium with far-red photoacclimation from Cuatro Ciénegas Basin, México. Photosynthetica, 56, 342–353.
Keywords: chlorophyll f; Cuatro Ciénegas Basin; far-red light; photosynthesis; phycobilisomes.
Strain(s): 30 
DOI: 10.1007/s11099-018-0774-z
Gómez-Martínez, D., Bengtson, J., Nilsson, A. K., Clarke, A. K., Nilsson, R. H., Kristiansson, E., Corcoll, N. 2023 Phenotypic and transcriptomic acclimation of the green microalga Raphidocelis subcapitata to high environmental levels of the herbicide diflufenican. Sci. Total Environ., 875, 162604 (article ID).
Keywords: Acclimation; Microalgae; Transcriptomics; Diflufenican; Carotenoids
Strain(s): 96298 
PubMed: 36878298
DOI: 10.1016/j.scitotenv.2023.162604
Gontcharov, A. A. & Melkonian, M. 2011 A study of conflict between molecular phylogeny and taxonomy in the Desmidiaceae (Streptophyta, Viridiplantae): analyses of 291 rbcL sequences. Protist, 162, 253-267.
Strain(s): 285297452 
PubMed: 20971037
DOI: 10.1016/j.protis.2010.08.003
Gontcharov, A. A. & Watanabe, M. M. 1999 Rare and new desmids (Desmidaceae, Chlorophyta) from Japan. Phycol. Res., 47, 233-240.
Keywords: desmids; new findings; new species; Japan
Strain(s): 839840841842 
DOI: 10.1046/j.1440-1835.1999.00172.x
Gontcharov, A. A., Marin, B., Melkonian, M. 2003 Molecular phylogeny of conjugating green algae (Zygnemophyceae, Streptophyta) inferred from SSU rDNA sequence comparisons. J. Mol. Evol., 56, 89-104.
Keywords: Green algae; Streptophyta; Zygnemophyceae; Desmids; Molecular phylogeny; SSU rDNA
Strain(s): 125309 
PubMed: 12569426
DOI: 10.1007/s00239-002-2383-4
González, M. A., Coleman, A. W., Gómez, P. I., Montoya, R. 2001 Phylogenetic relationship among various strains of Dunaliella (Chlorophyceae) based on nuclear ITS rDNA sequences. J. Phycol., 37, 604-611.
Keywords: Dunaliella; internal transcribed spacer; phylogenetics; rDNA; sequencing; strains; taxonomy
Strain(s): 35724107 
DOI: 10.1046/j.1529-8817.2001.037004604.x
González-Pleitera, M., Cirésa, S., Hurtado-Gallego, J., Leganés, F., Fernández-Piñas, F., Velázquez, D. 2019 Chapter 20 - Ecotoxicological assessment of antibiotics in freshwater using cyanobacteria. In Cyanobacteria: From Basic Science to Applications, Eds. by Mishra, A. K., Tiwari, D. N., Rai, A. N., Academic Press, pp. 339-417.
Keywords: Anabaena; Antibiotics; Biomarker; Bioreporter; Cyanobacteria; Ecotoxicology; Freshwater; Oxidative stress; Risk assessment
Strain(s): 192344107843 
DOI: 10.1016/B978-0-12-814667-5.00020-9
Gottschling, M., Keupp, H., Plotner, J., Knop, R., Willems, H., Kirsch, M. 2005 Phylogeny of calcareous dinoflagellates as inferred from ITS and ribosomal sequence data. Mol. Phylogenet. Evol., 36, 444-455.
Keywords: 5.8S rRNA; Calciodinellaceae; Internal transcribed spacer; Paleontology; Molecular systematics; Secondary structure
Strain(s): 7 
PubMed: 15964218
DOI: 10.1016/j.ympev.2005.03.036
Gowans, C. S. 1963 The conspecificity of Chlamydomonas eugametos and Chlamydomonas moewusii: an experimental approach. Phycologia, 3, 37-44.
Strain(s): 2219 
DOI: 10.2216/i0031-8884-3-1-37.1
Grauvogel, C. & Petersen, J. 2007 Isoprenoid biosynthesis authenticates the classification of the green alga Mesostigma viride as an ancient streptophyte. Gene, 396(1), 125-133.
Keywords: evolution; primer design; cytosolic MVA pathway; plastid MEP pathway; Chlorophyta; Plantae; Cyanophora paradoxa
Strain(s): 476 
PubMed: 17433859
DOI: 10.1016/j.gene.2007.02.020
Greenwold, M. J., Cunningham, B. R., Lachenmyer, E. M., Pullman, J. M., Richardson, T. L., Dudycha, J. L. 2019 Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae. Proc. R. Soc. B-Biol. Sci., 286, 20190655 (article ID).
Keywords: photosynthesis; photosynthetically usable radiation; phycobilin; resource acquisition
Strain(s): 698702 
PubMed: 31088271
DOI: 10.1098/rspb.2019.0655
Grewe, C., Griehl, C. 2008 Time- and media-dependent secondary carotenoid accumulation in Haematococcus pluvialis. Biotechnol. J., 3, 1232-1244.
Keywords: Astaxanthin; Carotenoid biosynthesis; ; Haematococcus pluvialis; LC-MS; Media
Strain(s): 144 
PubMed: 18683169
DOI: 10.1002/biot.200800067
Grilli Caiola, M., Canini, A., Galiazzo, F., Rotilio, G. 1991 Superoxide dismutase in vegetative cells, heterocysts and akinetes of Anabaena cylindrica Lemm. FEMS Microbiol. Lett., 80, 161-166.
Keywords: Anabaena cylindrica; superoxide dismutase; heterocyst; nitrogenase activity
Strain(s): 19 
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Grochau-Wright, Z. I., Hanschen, E. R., Ferris, P. J., Hamaji, T., Nozaki, H., Olson, B. J. S. C., Michod, R. E. 2017 Genetic basis for soma is present in undifferentiated volvocine green algae. J. Evol. Biol., 30, 1205–1218
Keywords: VARL domain; gene duplication; germ-soma differentiation; major transitions; multicellularity; volvocine algae
Strain(s): 1861 
PubMed: 28425150
DOI: 10.1111/jeb.13100
Gross, W., Schnarrenberger, C. 1995 Heterotrophic growth of two strains of the acido-thermophilic red alga Galdieria sulphuraria. Plant Cell Physiol., 36, 633-638.
Keywords: Galdieria sulphuraria; Heterotrophy; Monosaccharides; Pigmentation; Rhodophyta; Sugar alchols
Strain(s): 3638 
DOI: 10.1093/oxfordjournals.pcp.a078803
Gross, W., Seipold, P., Schnarrenberger, C. 1997 Characterization and purification of an aldose reductase from the acidophilic and thermophilic red alga Galdieria sulphuraria. Plant Physiol., 114, 231-216.
Strain(s): 3638 
PubMed: 12223702
DOI: 10.1104/pp.114.1.231
Grotjohann, N. & Kowallik, W. 1989 Influence of blue light on the activity of phosphofructokinase in Chlorella kessleri. Physiol. Plant., 75, 43-46.
Keywords: blue/UV-photoreceptor; Chlorella kessleri; phosphofructokinase
Strain(s): 2160 
DOI: 10.1111/j.1399-3054.1989.tb02061.x
Grzebyk, D., Pasqualini, V., Garrido, M., Quilichini, Y., Pereto, C., Cecchi, P. 2022 Insight into the morphology and genetic diversity of the Chaetoceros tenuissimus (Bacillariophyta) species complex. Eur. J. Phycol., 57, 507-525.
Keywords: Cell division; Chaetoceros tenuissimus; internal transcribed spacer (ITS); morphology; phylogeny; rDNA; ultrastructure
Strain(s): 3715 
DOI: 10.1080/09670262.2022.2029949
Gu, S., Dai, X., Niu, Q., Jiang, J., Liu, Y. 2021 Molecular, structural and biochemical characterization of a novel recombinant chlorophyllase from cyanobacterium Oscillatoria acuminata PCC 6304. Microb. Cell. Fact., 20, 14 (article ID).
Keywords: Chlorophyllase; Oscillatoria acuminata PCC 6304; Biochemical characteristic; Substrate specifcity; Catalytic triad
Strain(s): 2108 
DOI: 10.1186/s12934-020-01507-w
Gu, Y., Tobino, T., Nakajima, F. 2021 Determining the relative importance of dietborne and waterborne toxicity of 4-tert-butylphenol and 4-tert-octylphenol to the benthic crustacean, Heterocypris incongruens. Environ. Sci. Technol., 55, 7939–7948.
Keywords: alkylphenol; toxicity test; dietborne toxicity; exposure route; Heterocypris incongruens; ISO 14371
Strain(s): 947972170 
PubMed: 34047553
DOI: 10.1021/acs.est.0c08164
Guerriero, G., Sergeant, K., Legay, S., Hausman, J. F., Cauchie, H. M., Ahmad, I., Siddiqui, K. S. 2018 Novel insights from comparative in silico analysis of green microalgal cellulases. Int. J. Mol. Sci., 19, 1782 (article ID).
Keywords: cellulase; glycosyl hydrolase family 9; carbohydrate binding module (CBM); bioinformatics; RT-qPCR
Strain(s): 2863 
PubMed: 29914107
DOI: 10.3390/ijms19061782
Gugger, M., Lyra, C., Henriksen, P., Coute, A., Humbert, J.-F., Sivonen, K. 2002 Phylogenetic comparison of the cyanobacterial genera Anabena and Aphanizomenon. Int. J. Syst. Evol. Microbiol., 52, 1867-1880.
Keywords: Anabaena; Aphanizomenon; 16S rDNA; 16S-23S rDNA; RubisCO spacer
Strain(s): 81 
PubMed: 12361299
DOI: 10.1099/00207713-52-5-1867
Guidi-Rontani, C., Maheswari, U., Jabbari, K., Bowler, C. 2010 Comparative ecophysiology and genomics of the toxic unicellular alga Fibrocapsa japonica. New Phytol., 185, 446-458.
Keywords: expressed sequence tags (ESTs); Fibrocapsa japonica; harmful algal blooms; heterokont; phylogeny; raphidophyte; stramenopile; toxicity
Strain(s): 4625606051303 
DOI: 10.1111/j.1469-8137.2009.03074.x
Guillou, L. 2011 Characterization of the Parmales: much more than the resolution of a taxonomic enigma. J. Phycol., 47, 2-4.
Strain(s): 2682336933703371 
DOI: 10.1111/j.1529-8817.2010.00951.x
Guillou, L., Chrétiennot-Dinet, M. J., Boulben, S., Moon-van der Staay, S. Y., Vaulot, D. 1999 Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): two new heterotrophic flagellates of picoplanktonic size. Protist, 150, 383-398.
Strain(s): 25862589 
DOI: 10.1016/S1434-4610(99)70040-4
Guillou, L., Chrétiennot-Dinet, M. J., Medlin, L. K., Claustre, H., Loiseaux-de Goër, S., Vaulot, D. 1999 Bolidomonas: a new genus with two species belonging to a new algal class, the Bolidophyceae (Heterokonta). J. Phycol., 35, 368-381.
Keywords: Bolidophyceae; diatoms; Heterokonta; marine picoeukaryotes; oligotrophic ocean; Stramenopiles
Strain(s): 2682 
DOI: 10.1046/j.1529-8817.1999.3520368.x
Guillou, L., Jacquet, S., Chrétiennot-Dinet, M. J., Vaulot, D. 2001 Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquat. Microb. Ecol., 26, 201-207.
Strain(s): 25862589 
DOI: 10.3354/ame026201
Guillou, L., Moon-van der Staay, S. Y., Claustre, H., Partensky, F., Vaulot, D. 1999 Diversity and abundance of Bolidophyceae (Heterokonta) in two oceanic regions. Appl. Environ. Microbiol., 65, 4528-4536.
Strain(s): 2586258926822691 
PubMed: 10508085
DOI: 10.1128/AEM.65.10.4528-4536.1999
Guionet, A., Hosseini, B., Teissié, J., Akiyama, H., Hosseini, H. 2017 A new mechanism for efficient hydrocarbon electro-extraction from Botryococcus braunii. Biotechnol. Biofuels, 10, 39 (article ID).
Keywords: Green energy; Biofuel; Hydrocarbon; Extraction; Botryococcus braunii kützing; Nanosecond pulsed electric field (nsPEF)
Strain(s): 836 
PubMed: 28228843
DOI: 10.1186/s13068-017-0724-1
Guionet, A., Oura, K., Akiyama, H., Hosano, H. 2019 The narrow window of energy application for oil extraction by arc discharge. J. Appl. Phycol., 31, 89–96.
Keywords: Botryococcus braunii; Hydrocarbons; Biofuel; Matrix; Extraction
Strain(s): 836 
DOI: 10.1007/s10811-018-1579-y
Guo, B., Lei, C., Ito, T., Jiang, Y., Ozeki, Y., Goda, K. 2016 High-throughput accurate single-cell screening of Euglena gracilis with fluorescence-assisted optofluidic time-stretch microscopy. PLoS One, 11, e0166214 (article ID).
Strain(s): 48 
PubMed: 27846239
DOI: 10.1371/journal.pone.0166214
Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017 High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy. Proc. of SPIE, 10076
Keywords: high-throughput screening; biofuel; Euglena gracilis; global warming; microfluidics; optofluidics; single-cell analysis; quantitative phase microscopy
Strain(s): 48 
DOI: 10.1117/12.2251157
Guo, B., Lei, C., Kobayashi, H., Ito, T., Yalikun, Y., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda. K. 2017 High-throughput, label-free, single-cell, microalgal lipid screening by machine-learning-equipped optofluidic time-stretch quantitative phase microscopy. Cytom. Part A, 91, 494-502.
Strain(s): 48 
PubMed: 2839932
DOI: 10.1002/cyto.a.23084
Guo, Y., Zang, X., Cao, X., Zhang, F., Sun, D., Shang, M., Li, R., Yangzong, Z., Wei, X., Zhang, X. 2020 Cloning and expression of Allophycocyanin gene from Gracilariopsis lemaneiformis and studying the binding sites of phycocyanobilin on its α and β subunits. J. Appl. Phycol., 32, 2657-2671.
Keywords: Gracilariopsis lemaneiformis; Rhodophyta; Allophycocyanin; Expression; Fluorescence
Strain(s): 2104 
DOI: 10.1007/s10811-020-02102-7
Ha, J. H., Hidaka, T., Tsuno, H. 2009 Quantification of toxic Microcystis and evolution of its dominance ratio in blooms using real-time PCR. Environ. Sci. Technol., 43, 812-818.
Strain(s): 102 
PubMed: 19245020
DOI: 10.1021/es801265f
Ha, K., Takamura, N., Jang, M.-H. 2009 Microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish at different kairomone concentrations. Bull. Environ. Contam. Toxicol., 83, 761-765.
Keywords: microcystin; kairomone; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi
Strain(s): 89103107 
PubMed: 19669611
DOI: 10.1007/s00128-009-9841-2
Hagino, K., Bendif, E. M., Young, J. R. Kogame, K., Probert, I., Takano, Y., Horiguchi, T., de Vardas, C., Okada, H. 2011 New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliania huxleyi (Prymnesiophyceae) from the COX1b-ATP4 genes. J. Phycol., 47, 1164-1176.
Keywords: biogeography; coccolithophore; Emiliania huxleyi; mitochondrial DNA; morphotype
Strain(s): 83783810001311131213131314 
DOI: 10.1111/j.1529-8817.2011.01053.x
Hagiwara, T., Yagi, O., Takamura, Y., Sudo, R. 1984 Isolation of bacteria-free Microcystis aeruginosa from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 437-442 (in Japanese with English summary).
Strain(s): 604 
Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N., Bosch, T. C.G. 2018 Metabolic co-dependence drives the evolutionary ancient Hydra-Chlorella symbiosis. eLife, 7, e35122 (article ID).
Keywords: Chlorella; Hydra; evolutionary biology; genome; nitrogen metabolism; symbiosis
Strain(s): 216622352541 
PubMed: 29848439
DOI: 10.7554/eLife.35122
Hamada, S., Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Ito, M. 2006 Isolation of myosin XI genes from the Closterium peracerosum-strigosum-littorale complex and analysis of their expression during sexual reproduction. J. Plant Res., 119, 105-113.
Keywords: Closterium; Cytokinesis; Myosin XI; Real-time PCR; Sexual cell division; Sexual reproduction
Strain(s): 656768 
PubMed: 16456621
DOI: 10.1007/s10265-005-0249-8
Hamaji, T., Ferris, J. P., Nishii, I., Nishimura, Y., Nozaki, H. 2013 Distribution of the sex-determining geneMID and molecular correspondence of mating types within the isogamous genus Gonium (Volvocales, Chlorophyta). PLoS One, 8, e64385 (article ID).
Strain(s): 6526536546558518521038103917081710171124552457 
PubMed: 23696888
DOI: 10.1371/journal.pone.0064385
Hamaji, T., Ferris, P. J., Coleman, A.W., Waffenschmidt, S., Takahashi, F., Nishii, I., Nozaki, H. 2008 Identification of the minus-dominance gene ortholog in the mating-type locus of Gonium pectorale. Genetics, 178, 283-294.
Strain(s): 17101711 
PubMed: 18202374
DOI: 10.1534/genetics.107.078618
Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R. 2017 Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae. Genome Biol. Evol., 9, 993-999.
Keywords: Eudorina; linear mitochondrial DNA; telomere; Volvox; Yamagishiella
Strain(s): 39823984 
PubMed: 31972029
DOI: 10.1093/gbe/evx060
Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H. 2018 Anisogamy evolved with a reduced sexdetermining region in volvocine green algae. Communications Biology, 1, 17 (article ID).
Strain(s): 398239833984398540184100 
DOI: 10.1038/s42003-018-0019-5
Hamaji, T., Mogi, Y., Ferris, P. J., Mori, T., Miyagishima, S., Kabeya, Y., Nishimura, Y., Toyoda, A., Noguchi, H., Fujiyama, A., Olson, B. J. S. C., Marriage, T. N., Nishii, I., Umen, J. G. Nozaki, H. 2016 Sequence of the Gonium pectorale mating locus reveals a complex and dynamic history of changes in volvocine algal mating haplotypes. G3-Genes Genomes Genet., 6, 1179-1189.
Keywords: Gonium; Chlamydomonas; Volvox; mating locus; evolution; Genetics of Sex
Strain(s): 2863 
PubMed: 26921294
DOI: 10.1534/g3.115.026229
Hamaji, T., Smith, DR., Noguchi, H., Toyoda, A., Suzuki, M., Kawai-Toyooka, H., Fujiyama, A., Nishii, I., Marriage, T., Olson, B. J. S. C., Nozaki, H. 2013 Mitochondrial and plastid genomes of the colonial green alga Gonium pectorale give insights into the origins of organelle DNA architecture within the Volvocales. PLoS One, 8, e57177 (article ID).
Strain(s): 2863 
PubMed: 23468928
DOI: 10.1371/journal.pone.0057177
Hamamoto, Y. & Honda, D. 2019 Nutritional intake of Aplanochytrium (Labyrinthulea, Stramenopiles) from living diatoms revealed by culture experiments suggesting the new prey–predator interactions in the grazing food web of the marine ecosystem. PLoS One, 14, e0208941 (article ID).
Strain(s): 3243712 
PubMed: 30625142
DOI: 10.1371/journal.pone.0208941
Hamana, K. 2008 Cellular polyamines of phototrophs and beterotrophs belonging to the lower eukaryotic phyla Cercozoa, Euglenozoa, Heterokonta and Metamonada. J. Gen. Appl. Microbiol., 54, 135-140.
Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine
Strain(s): 9157186118253323330333548603622100210031011104413031380144014431444 
PubMed: 18497488
DOI: 10.2323/jgam.54.135
Hamana, K. & Niitsu, M. 2006 Cellular polyamines of lower eukaryotes belonging to the phyla Glaucophyta, Rhodophyta, Cryptophyta, Haptophyta and Percolozoa. J. Gen. Appl. Microbiol., 52, 235-240.
Keywords: Cryptophyta; Glaucophyta; Haptophyta; Perclozoa; polyamine; Rhodophyta
Strain(s): 82742762772823533886997067157417637641016101710321036133214411456145714621463146714733377 
PubMed: 17116972
DOI: 10.2323/jgam.52.235
Hamana, K., Aizaki T., Arai, E., Saito, A., Uchikata, K., Ohnishi, H. 2004 Distribution of norspermidine s a cellular polyamine within micro green algae including non-photosynthetic achlorophyllous Polytoma, Polytomella, Prototheca and Helicosporidium. J. Gen. Appl. Microbiol., 50, 289-295.
Keywords: Chlorophyta; green alga; Helicosporidium; norspermidine; polyamine; Polytoma; Polytomella; Prototheca
Strain(s): 18251254255296329483486536 
Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─ Microb. Resour. Syst., 32, 179-186.
Keywords: cyanobacteria; homospermidine; polyamine; thermospermine
Strain(s): 208620872134241225393373 
Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M. 2022 Additional polyamine analysis of algal chlorarachniophytes, euglenophytes, haptophytes, cryptophytes, dinoflagellates, chromerids and heterokontophytes. —Polyamine analysis of algae IV— Microb. Resour. Syst., 38, 51-62.
Keywords: alga; chlorarachniophyte; chromerid; dinoflagellate; polyamine
Strain(s): 1247482532742762772822863043313813874636236246997067157411443214521462149235123782433253525842588263526772716272828603576374540604109428043914392 
Hamana, K., Furuchi, T., Hayashi, H., Uemura, T., Niitsu, M. 2023 Additional polyamine analysis of the algae belonging to the phyla Glaucophyta, Rhodophyta and Chlorophyta. ─Polyamine analysis of algae V─ Microb. Resour. Syst., 39, 33-40.
Keywords: alga; Chlorophyta; Glaucophyta; polyamine; Rhodophyta
Strain(s): 22625025455055162612981332170318362137216321642165216622522353289433773645386738913892410743904452 
Hamana, K., Furuchi, T., Nakamura, T., Hayashi, H., Niitsu, M. 2017 Occurrence of penta-amines, hexa-amines and N-methylated polyamines in unicellular eukaryotic organisms belonging to the phyla Heterokontophyta and Labyrinthulomycota of the subdomain Stramenopiles. J. Gen. Appl. Microbiol., 62, 320-325.
Keywords: Bioaccumulation; clam Corbicula leana; cyanotoxins; elimination; Microcystis
Strain(s): 2535 
PubMed: 27773915
DOI: 10.2323/jgam.2016.05.001
Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine analysis of unicellular, colonial, and multicellular green algae —Detection of aminobutylcadaverine, N1-aminopentylspermidine, N8-aminopentylspermidine, and penta-amines.— Microb. Resour. Syst., 34, 73-82.
Keywords: aminobutylcadaverine; aminopentylspermidine; green alga; penta-amine; polyamine; thermospermine
Strain(s): 1835242691735127112782185218722352261254025723983 
Hamana, K., Kobayashi, M., Furuchi, T., Hayashi, H., Niitsu, M. 2018 Polyamine distribution profiles in unicellular and multicellular red algae (phylum Rhodophyta) —Detection of 1,6-diaminohexane, aminobutylcadaverine, canavalmine and aminopropylcanavalmine.— Microb. Resour. Syst., 34, 83-91.
Keywords: aminobutylcadaverine; aminopropylcanavalmine; canavalmine; diaminohexane; polyamine; red algae; Rhodophyta
Strain(s): 55110321572195721382140263626622742 
Hamana, K., Kobayashi, M., Yokota, A., Sekiguchi, H., Niitsu, M. 2008 Cellular polyamine profiles in cyanobacteria. Microbiol. Cult. Coll., 24, 3-8.
Keywords: cyanobacteria; homospermidine; polyamine; spermine; thermospermine
Strain(s): 263336462062082302672683053614164334344815075975989319321031211521332135 
Hamana, K., Matsuzaki, S., Niitsu, M., Samejima, K., Nagashima, H. 1990 Polyamines of unicellular thermoacidophilic red alga Cyanidium caldarium. Phytochemistry, 29, 377-380.
Keywords: Cyanidium caldarium; Rhodophyta; red algae; polyamines; chemotaxonomy
Strain(s): 25021373891 
DOI: 10.1016/0031-9422(90)85082-Q
Hamana, K., Miyagawa, K., Matsuzaki, S. 1983 Occurrence of syn-homospermidine as the major polyamine in nitrogen-fixing cyanobacteria. Biochem. Biophys. Res. Commun., 112, 606-613.
Strain(s): 19373921293275 
PubMed: 6405746
DOI: 10.1016/0006-291X(83)91507-3
Hamana, K., Niitsu, M., Hayashi, H. 2013 Occurrence of homospermidine and thermospermine as a cellular polyamine in unicellular chlorophyte and multicellular charophyte green algae J. Gen. Appl. Micobiol., 59, 313-319.
Keywords: green alga; homospermidine; polyamine; thermospermine
Strain(s): 1815116025529630636036364072283614091410141114191837216421993374 
PubMed: 24005181
DOI: 10.2323/jgam.59.313
Hamana, K., Sakamoto, A., Nishina, M., Niitsu, M. 2004 Cellular polyamine profile of the phyla Dinophyta, Apicomplexa, Ciliophora, Euglenozoa, Cercozoa and Heterokonta. J. Gen. Appl. Microbiol., 50, 297-303.
Keywords: Apicomlexa; Cercozoa; Ciliophora; Dinophyta; Euglenozoa; Heterokonta; norspermidine; polyamine
Strain(s): 12286304331381387463 
PubMed: 15747233
DOI: 10.2323/jgam.50.297
Hamano, R., Shoumura, S., Takeda, Y., Yamazaki, T., Hirayama, K., Hanada, Y., Mayama, S., Takemura, M., Lin, H.-J., Umemura, K. 2021 Sinking of four species of living diatom cells directly observed by a “tumbled” optical microscope. Microsc. microanal., 27, 1154-1160.
Strain(s): 589 
PubMed: 34294188
DOI: 10.1017/S1431927621012150
Han, J.-I., Yao, J., Lee, C., Park, J., Choi, Y.-E. 2019 A novel approach to enhance astaxanthin production in Haematococcus lacustris using a microstructure-based culture platform. Algal Res., 39, 101464.
Keywords: Haematococcus lacustris; Microfabricated structure; Astaxanthin; ROS; Mechanical stimulation
Strain(s): 144 
DOI: 10.1016/j.algal.2019.101464
Han, S.-I., Chang, S. H., Lee, C., Jeon, M. S., Heo, Y. M., Kim, S. 2020 Astaxanthin biosynthesis promotion with pH shock in the green microalga, Haematococcus lacustris. Bioresour. Technol., 314, 123725 (article ID).
Keywords: Haematococcus lacustris; Astaxanthin; pH shock; Biological change; Mass culture
Strain(s): 144 
PubMed: 32615445
DOI: 10.1016/j.biortech.2020.123725
Han, S.-I., Jeon, M. S., Ahn, J.-W., Choi, Y.-E. 2022 Establishment of ultrasonic stimulation to enhance growth of Haematococcus lacustris. Bioresour. Technol., 360, 127525 (article ID).
Keywords: Haematococcus lacustris; Astaxanthin; Ultrasonication; Cell division
Strain(s): 144 
PubMed: 35760247
DOI: 10.1016/j.biortech.2022.127525
Hanagata, N., Karube, I., Chihara, M., Silva, P. C. 1998 Reconsideration of the taxonomy of ellipsoidal species of Chlorella (Trebouxiophyceae, Chlorophyta), with establishment of Watanabea gen. nov. Phycol. Res., 46, 221-229.
Keywords: Chlorella saccharophila; ellipsoidal species of Chlorella; pyrenoid-lacking Chlorella-like algae: Watanabea gen. et sp. nov.
Strain(s): 2189 
DOI: 10.1111/j.1440-1835.1998.tb00117.x
Hanazato, T. 1991 Interrelations between Microcystis and Cladocera in the highly eutrophic Lake Kasumigaura, Japan. Int. Revue ges. Hydrobiol., 76, 21-36.
Keywords: Microcystis; Cladocera; toxicity; food chain; Lake Kasumigaura
Strain(s): 44298299 
DOI: 10.1002/iroh.19910760104
Handa, S., Nakahara, M., Tsubota, H., Deguchi, H., Nakano, T. 2003 A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycol. Res., 51, 203-210.
Keywords: aerial algae; molecular phylogeny; Stichococcus ampulliformis sp. nov.; Trebouxiophyceae; 18SrRNA gene
Strain(s): 996 
DOI: 10.1046/j.1440-1835.2003.00311.x
Handa, S., Nakahara-Tsubota, M., Shoda, I., Mizobuchi, A., Nakano, T., Tsubota, H. 2023 Trentepohlia brevicellulis comb. et stat. nov. (Trentepohliaceae, Ulvophyceae) found in Japan. Phycol. Res., 72, 12-26.
Keywords: 18S rDNA; aerial algae; molecular phylogeny; morphology; Trentepohlia bosseae var. brevicellulis
Strain(s): 26442645264626472649265026512652265326542655265626572658 
DOI: 10.1111/pre.12537
Hang, L. T., Mori, K., Tanaka, Y., Morikawa, M., Toyama, T. 2020 Enhanced lipid productivity of Chlamydomonas reinhardtii with combination of NaCl and CaCl2 stresses. Bioprocess. Biosyst. Eng., 43, 971–980.
Keywords: Chlamydomonas reinhardtii; NaCl; CaCl2; Lipid accumulation; Biofuel production
Strain(s): 2235 
PubMed: 32008095
DOI: 10.1007/s00449-020-02293-w
Hang, L. T., Mori, K., Toyama, T. 2020 Enhanced biomass and lipid production capacity of Chlamydomonas reinhardtii under mixotrophic cultivation using sewage effluent and waste molasses. Jpn. J. Water Treat. Biol., 56, 57-66.
Keywords: Chlamydomonas reinhardtii; lipid production; mixotrophy; sewage effluent; organic waste
Strain(s): 2235 
DOI: 10.2521/jswtb.56.57
Hano, T. & Tomaru, Y. 2019 Metabolomics-based approach to explore growth phase-dependent markers in cultured diatom Chaetoceros tenuissimus. J. Chromatogr. B, 1128, 121779 (article ID).
Keywords: Diatom; Metabolomics; Gas chromatography mass spectrometry; Liquid chromatography tandem mass spectrometry; Growth phase
Strain(s): 3715 
PubMed: 31499295
DOI: 10.1016/j.jchromb.2019.121779
Hano, T. & Tomaru, Y. 2023 Chronological age-related metabolome responses in the dinoflagellate Karenia mikimotoi, can predict future bloom demise. Commun. Biol., 6, 273 (article ID).
Strain(s): 3715 
PubMed: 36922623
DOI: 10.1038/s42003-023-04646-z
Hanschen, E. R., Davison, D. R., Ferris, P. J., Michod, R. E. 2018 On the rediscovery of Volvox perglobator (Volvocales, Chlorophyceae) and the evolution of outcrossing from self-fertilization. Evol. Ecol. Res., 19, 299-318.
Keywords: homothallism; phylogenetics; reversion; self-fertilization; sexual reproduction; volvocine green algae
Strain(s): 28942145645846047452254154354454556456656856957157257457858265373275185185687287687787888088210381122114011481156115713621708171117131859245725692738338233883780378239864145425842594260 
Hanschen, E. R., Ferris, P. J., Michod, R. E. 2014 Early evolution of the genetic basis for soma in the Volvocaceae. Evolution, 68, 2014-2025.
Keywords: Gene duplication; germ-soma differentiation; major transitions; multicellularity; regA; Volvox
Strain(s): 2739 
PubMed: 4689915
DOI: 10.1111/evo.12416
Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Multicellularity drives the evolution of sexual traits. Am. Nat., 192, E93-E10.
Keywords: sex; volvocine green algae; multicellularity; ancestral state; reconstruction; anisogamy; sexual dimorphism
Strain(s): 28941842145645846052254154354454556456656856957157257457858265373275185185685787287587687787888088288389189210381362171117132457256927383382338837803782 
PubMed: 30125231
DOI: 10.1086/698301
Hanschen, E. R., Herron, M. D., Wiens, J. J., Nozaki, H., Michod, R. E. 2018 Repeated evolution and reversibilityof self-fertilization in the volvocinegreen algae. Evolution, 72, 386-398.
Keywords: Haploid; phylogenetics; self-fertilization; sex; sexual reproduction; volvocine green algae
Strain(s): 28941845645846054154354454556456656856957157257457858265373285185685787287587687787888088288389189210381362171117132457256927383382338837803782 
PubMed: 29134623
DOI: 10.1111/evo.13394
Hanschen, E. R., Marriage, T.N., Ferris, P.J., Hamaji, T., Toyoda, A., Fujiyama,A., Neme,R., Noguchi,H., Minakuchi, Y., Suzuki, M., Kawai-Toyooka, H., Smith, D.R., Sparks, H., Anderson, J., Bakaric, R., Luria, V., Karger, A., Kirschner, M.W., Durand, P.M., Michod, R.E., Nozaki, H., Olson, B.J. 2016 The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat. Commun., 7, 11370 (article ID).
Strain(s): 2863 
PubMed: 27102219
DOI: 10.1038/ncomms11370
Hara, Y. 1990 Chattonella ovata Y. Hara et Chihara mss. In Red Tide Organisms in Japan - An Illustrated Taxonomic Guide, Eds. by Fukuyo, Y., Takano, H., Chihara, M. & Matsuoka, K., Uchida Rokakuho, Tokyo, pp. 340-341 (in Japanese with English summary).
Strain(s): 603 
Hara, Y. & Chihara, M. 1982 Ultrastructure and taxonomy of Chattonella (Class Raphidophyceae) in Japan. Jpn. J. Phycol. (Sôrui), 30, 47-56 (in Japanese with English summary).
Keywords: Chattonella; Chattonella marina comb. nov.; Raphidophyceae; red tides; taxonomy; ultrastructure
Strain(s): 161 
Hara, Y., Doi, K., Chihara, M. 1994 Four new species of Chattonella (Raphidophyceae, Chromophyta) from Japan. Jpn. J. Phycol. (Sôrui), 42, 407-420.
Keywords: Chattonella; C. globosa; C. minima; C. ovata; C. verruculosa; Raphidophyceae; red tide organisms; taxonomy
Strain(s): 118161603670849 
Hara, Y., Inouye, I., Chihara, M. 1985 Morphology and ultrastructure of Olisthodiscus luteus (Raphidophyceae) with special reference to the taxonomy. Bot. Mag. Tokyo, 98, 251-262.
Keywords: Heterosigma; Olisthodiscus luteus; Raphidophyceae; red tide flagellate; taxonomy of Olisthodiscus; ultrastructure of Olisthodiscus
Strain(s): 15 
DOI: 10.1007/BF02488775
Harada, K-I., Ozaki, K., Tsuzuki, S., Kato, H., Hasegawa, M., Kuroda, E. K., Arii, S., Tsuji, K. 2009 Blue color formation of cyanobacteria with b-cyclocitral. J. Chem. Ecol., 35, 1295-1301.
Keywords: b-cyclocitral; cyanobacteria; lysis; blue color formation; acid stress
Strain(s): 73102103112298611808 
PubMed: 19936836
DOI: 10.1007/s10886-009-9706-5
Harada, N., Hirose, Y., Chihong, S., Kurita, H., Sato, M., Onodera, J., Murata, K., Itoh, F. 2021 A novel characteristic of a phytoplankton as a potential source of straight-chain alkanes. Sci Rep, 11, 14190 (article ID).
Strain(s): 1001277927803367 
PubMed: 34276049
DOI: 10.1038/s41598-021-93204-w
Harada, R., Hirakawa, Y., Yabuki, A., Kashiyama, Y., Maruyama, M., Onuma, R., Soukal, P., Miyagishima, S., Hampl, V., Tanifuji, G., Inagaki, Y. 2020 Inventory and evolution of mitochondrion-localized family a DNA polymerases in Euglenozoa. Pathogens, 9, 257 (article ID).
Keywords: DNA replication; family A DNA polymerase; plant and protist organellar DNA polymerase; Trypanosomatida; Kinetoplastea; Diplonemea; Euglenida; Prokinetoplastina
Strain(s): 381 
PubMed: 32244644
DOI: 10.3390/pathogens9040257
Haraguchi, Y. & Shimizu, T. 2021 Microalgal culture in animal cell waste medium for sustainable 'cultured food' production. Arch. Microbiol., 203, 5525–5532.
Keywords: Algal technology; Animal cells; Cultured food; Metabolism; Sustainability
Strain(s): 2170 
PubMed: 34426852
DOI: 10.1007/s00203-021-02509-x
Haraguchi, Y. & Shimizu, T. 2021 Three-dimensional tissue fabrication system by co-culture of microalgae and animal cells for production of thicker and healthy cultured food. Biotechnol. Lett., 43, 1117–1129.
Strain(s): 2170 
PubMed: 33689062
DOI: 10.1007/s10529-021-03106-0
Harashima, A., Watanabe, M., Fujishiro, I. 1988 Evolution of bioconvection patterns in a culture of motile flagellates. Phys. Fluids, 31, 764-775.
Strain(s): 6 
DOI: 10.1063/1.866812
Hariganeya, N., Tanimoto, Y., Yamaguchi, H., Nishimura, T., Tawong, W., Sakanari, H., Yoshimatsu, T., Sato, S., Preston, C. M., Adachi, M. 2013 Quantitative PCR method for enumeration of cells of cryptic species of the toxic marine dinoflagellate Ostreopsis spp. in Coastal Waters of Japan. PLoS One, 8, e57627 (article ID).
Strain(s): 4118 
PubMed: 23593102
DOI: 10.1371/journal.pone.0057627
Harke, M. J., Berry, D. L., Ammerman, J. W., Gobler, C. J. 2012 Molecular response of the bloom-forming cyanobacterium, Microcystis aeruginosa, to phosphorus Limitation. Microb. Ecol., 63, 188-198.
Strain(s): 843 
PubMed: 21720829
DOI: 10.1007/s00248-011-9894-8
Harke, M. J., Jankowiak, J. G., Morrell, B. K., Gobler, C. J. 2017 Transcriptomic responses in the bloom-forming cyanobacterium Microcystis 2 induced during exposure to zooplankton. Appl. Environ. Microbiol., 83, e02832-16 (article ID).
Keywords: microcystis; RNA-Seq; transcriptome; grazing
Strain(s): 843 
PubMed: 28003198
DOI: 10.1128/AEM.02832-16
Harmon, J., Mikami, H., Kanno, H., Ito, T., Goda, K. 2020 Accurate classification of microalgae by intelligent frequency-division-multiplexed fluorescence imaging flow cytometry. OSA Continuum, 3, 430-440.
Strain(s): 229336404141 
DOI: 10.1364/OSAC.387523
Hase, E., Mihara, S., Otsuka, H. 1959 An additional note on the nature of sulfur-containing peptide nucleotide complex obtained from Chlorella and yeast. J. Gen. Appl. Microbiol., 5, 43-50.
Strain(s): 2170 
DOI: 10.2323/jgam.5.43
Hase, E., Mihara, S., Otsuka, H., Tamiya, H. 1959 Sulfur-containing peptide-nucleotide complex isolated from Chlorella and yeast cells. Arch. Biochem. Biophys., 83, 170-177.
Strain(s): 2170 
PubMed: 13662003
DOI: 10.1016/0003-9861(59)90021-9
Hase, E., Mihara, S., Tamiya, H. 1960 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. I. Plant Cell Physiol., 1, 131-142.
Strain(s): 2170 
Hase, E., Mihara, S., Tamiya, H. 1960 Some data on the nature of sulfur-containing peptide-nucleotide compounds obtained from Chlorella cells at different developmental stages in their life cycle. J. Gen. Appl. Microbiol., 6, 61-67.
Strain(s): 2170 
DOI: 10.2323/jgam.6.61
Hase, E., Mihara, S., Tamiya, H. 1960 Sulfur-containing deoxypentose polynucleotides obtained from Chlorella cells. Biochim. Biophys. Acta, 39, 381-382.
Strain(s): 2170 
DOI: 10.1016/0006-3002(60)90187-6
Hase, E., Mihara, S., Tamiya, H. 1961 Capabilities of various sulfur substances in inducing the cell division of Chlorella arrested by sulfur deficiency. J. Gen. Appl. Microbiol., 7, 173-176.
Strain(s): 2170 
DOI: 10.2323/jgam.7.173
Hase, E., Mihara, S., Tamiya, H. 1961 Role of sulfur in the cell division of Chlorella with special reference to the sulfur compounds appearing during the process of cell division. II. Plant Cell Physiol., 2, 9-24.
Strain(s): 2170 
Hase, E., Miyachi, S., Mihara, S. 1963 A preliminary note on the phosphorus compounds in chloroplast and volutin granules isolated from Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 619-626.
Strain(s): 2170 
Hase, E., Morimura, Y., Mihara, S., Tamiya, H. 1958 The role of sulfur in the cell division of Chlorella. Arch. Mikrobiol., 32, 87-95.
Strain(s): 2170 
DOI: 10.1007/BF00409966
Hase, E., Morimura, Y., Tamiya, H. 1957 Some data on the growth physiology of Chlorella studied by the technique of synchronous culture. Arch. Biochem. Biophys., 69, 149-165.
Strain(s): 2170 
PubMed: 13445189
DOI: 10.1016/0003-9861(57)90482-4
Hase, E., Moriyama, Y., Tamiya, H. 1960 A short remark on the role of sulfur in the cell division of Chlorella. J. Gen. Appl. Microbiol., 6, 68-69.
Strain(s): 2170 
DOI: 10.2323/jgam.6.68
Hase, E., Otsuka, H., Mihara, S., Tamiya, H. 1959 Role of sulfur in the cell division of Chlorella, studied by the technique of synchronous culture. Biochim. Biophys. Acta, 35, 180-189.
Strain(s): 2170 
PubMed: 13851937
DOI: 10.1016/0006-3002(59)90346-4
Hasegawa, H., Maki, T., Asano, K., Ueda, K., Ueda, K. 2004 Detection of iron(III)-binding ligands originating from marine phytoplankton using cathodic stripping voltammetry. Anal. Sci., 20, 89-93.
Strain(s): 116 
PubMed: 14753263
DOI: 10.2116/analsci.20.89
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A. 2018 Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae. J. Appl. Phycol., 30 2215-2225.
Keywords: Microalgae; Growth; Fe uptake; APCs; Chelating ligands
Strain(s): 16 
DOI: 10.1007/s10811-018-1462-x
Hasegawa, M., Nishizawa, A., Tsuji, K., Kimura, S., Harada, K. 2012 Volatile organic compounds derived from 2-keto-acid decarboxylase in Microcystis aeruginosa. Microbes Environ., 27, 525-528.
Keywords: cyanobacteria; volatile organic compounds; 3-methyl-1-butanol; 2-keto-acid decarboxylase; Microcystis
Strain(s): 843 
PubMed: 23047148
DOI: 10.1264/jsme2.ME12099
Hasegawa, M., Yoshida, T., Yabuta, M., Terazima, M., Kumazaki, S. 2011 Anti-Stokes fluorescence spectra of chloroplasts in Parachlorella kessleri and maize at room temperature as characterized by near-infrared continuous-wave laser fluorescence microscopy and absorption microscopy. J. Phys. Chem. B, 115, 4184-4194.
Strain(s): 2160 
PubMed: 21417246
DOI: 10.1021/jp111306k
Hashimoto, H. & Murakami, S. 1982 Changes in morphology and ultrastructure of chloroplast along its division cycle in Euglena gracilis cultured synchronously under photoautotrophic condition. Scientific Papers of the College of General Education, Univ. of Tokyo, 32, 55-64.
Strain(s): 48 
Hashimoto, H. & Murakami, S. 1982 Chloroplast replication and loss of chloroplast DNA induced by nalidixic acid in Euglena gracilis. Cell Struct. Funct., 7, 111-120.
Strain(s): 48 
DOI: 10.1247/csf.7.111
Hashimoto, H. & Murakami, S. 1983 Effects of cycloheximide and chloramphenicol on chloroplast replication in synchronously dividing cultured cells of Euglena gracilis. New Phytol., 94, 521-529.
Strain(s): 48 
DOI: 10.1111/j.1469-8137.1983.tb04861.x
Hashimoto, K., Uchida, H., Nishimura, T., Oikawa, H., Funaki, H., Honma, C., Yamaguchi, H., Suzuki, T., Adachi, M. 2021 Determination of optimal culture conditions for toxin production by a Prorocentrum limaHarmful Algae, 103, 102025 (article ID).
Strain(s): 4558 
PubMed: 33980453
DOI: 10.1016/j.hal.2021.102025
Hashizume, M., Yoshida, M., Demura, M., Watanabe, M. M. 2020 Culture study on utilization of phosphite by green microalgae. J. Appl. Phycol., 32, 889–899.
Keywords: Phosphite utilization; Chlorella vulgaris; Coccomyxa subellipsoidea
Strain(s): 216621702280 
DOI: 10.1007/s10811-020-02088-2
Hasunuma, T., Kikuyama, F., Matsuda, M., Aikawa, S., Izumi, Y., Kondo, A. 2013 Dynamic metabolic profiling of cyanobacterial glycogen biosynthesis under conditions of nitrate depletion. J. Exp. Bot., 64, 2943-2954.
Keywords: 13C; cyanobacteria; glycogen; in vivo labelling; metabolic turnover; metabolomics
Strain(s): 39 
PubMed: 23658429
DOI: 10.1093/jxb/ert134
Hata, N., Ogbonna, J. C., Hasegawa, Y., Taroda, H., Tanaka, H. 2001 Production of astaxanthin by Haematococcus pluvialis in a sequential heterotrophic-photoautotrophic culture. J. Appl. Phycol., 13, 395-402.
Keywords: astaxanthin; carotenoids; Haematococcus pluvialis; heterotrophic; photoautotrophic; two phase culture
Strain(s): 144 
DOI: 10.1023/A:1011921329568
Hatakeyama, S., Fukushima, S., Kasai, F., Shiraishi, H. 1994 Assessment of herbicide effects on algal production in the Kokai River (Japan) using a model stream and Selenastrum bioassay. Ecotoxicology, 3, 143-156.
Keywords: herbicides; effects; algal production; algal community; channel carrying river water; bioassay; pesticide analysis
Strain(s): 35 
DOI: 10.1007/BF00143411
Hatano, S. 1978 Studies on frost hardiness in Chlorella ellipsoidea: Effects of antimetabolites, surfactants, hormones, and sugars on the hardening process in the light and dark. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 175-196.
Strain(s): 2170 
Hatano, S. & Kabata, K. 1982 Transition of lipid metabolksm in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 145-156.
Strain(s): 2170 
Hatano, S., Akashi, H., Nogata, Y., Yoshimoto, M. 1987 Fatty acid synthetase system in relation to frost hardiness in Chlorella ellipsoidea. In Plant Cold Hardiness , Ed. by Li, P. H., Alan R. Liss, Inc., New York, pp. 101-115.
Strain(s): 2170 
Hatano, S., Hara, Y., Takahashi, M. 1983 Preliminary study on the effects of photoperiod and nutrients on the vertical migratory behavior of a red tide flagellate, Heterosigma akashiwo. Jpn. Jpn. J. Phycol. (Sôrui), 31, 263-269 (in Japanese with English summary).
Keywords: Heterosigma akashiwo; nutrients; photoperiod; vertical migration
Strain(s): 6 
Hatano, S., Joh, T., Miyamoto, T., Yoshimoto, M. 1992 Preparation of protoplasts from Chlorella ellipsoidea C-27. Plant Cell Physiol., 33, 651-655.
Keywords: cell wall-lytic enzyme; chitosanase; Chlorella ellipsoidea C-27; protoplast
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a078301
Hatano, S., Kabata, K., Sadakane, H. 1981 Transition of lipid synthesis from chloroplasts to a cytoplasmic system during hardening in Chlorella ellipsoidea. Plant Physiol., 67, 216-220.
Strain(s): 6872170 
PubMed: 16661649
DOI: 10.1104/pp.67.2.216
Hatano, S., Kabata, K., Yoshimoto, M., Sadakane, H. 1982 Accumulation of free fatty acid during hardening of Chlorella ellipsoidea. Plant Physiol., 70, 1173-1177.
Strain(s): 2170 
PubMed: 16662634
DOI: 10.1104/pp.70.4.1173
Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. I. Development of frost hardiness of Chlorella ellipsoidea in cynchronous culture. Plant Cell Physiol., 17, 451-458.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075298
Hatano, S., Sadakane, H., Tutumi, M., Watanabe, T. 1976 Studies on frost hardiness in Chlorella ellipsoidea. II. Effects of inhibitors of RNA and protein synthesis and surfactants on the process of hardening. Plant Cell Physiol., 17, 643-651.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075320
Hattori, A. 1957 Studies on the metabolism of urea and other nitrogenous compounds in Chlorella ellipsoidea. J. Biochem., 44, 253-273.
Strain(s): 2170 
Hattori, A. & Fujita, Y. 1959 Crystalline phycobilin chromoproteids obtained from a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 633-644.
Strain(s): 37 
DOI: 10.1093/jb/46.5.633
Hattori, A. & Fujita, Y. 1959 Effect of pre-illumination on the formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis. J. Biochem., 46, 1259-1261.
Strain(s): 37 
Hattori, A. & Fujita, Y. 1959 Formation of phycobilin pigments in a blue-green alga, Tolypothrix tenuis, as induced by illumination with colored lights. J. Biochem., 46, 521-524.
Strain(s): 37 
Hattori, A. & Fujita, Y. 1959 Spectroscopic studies on the phycobilin pigments obtained from blue-green and red algae. J. Biochem., 46, 903-909.
Strain(s): 37 
Hattori, A. & Uesugi, I. 1968 Ferredoxin-dependent photoreduction of nitrate and nitrite by subcellular preparations of Anabaena cylindrica. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K., et al., University of Tokyo Press, Tokyo, pp. 201-205.
Strain(s): 19 
Hautala, H., Lamminmäki, U., Spoof, L., Nybom, S., Meriluoto, J., Vehniäinen, M. 2013 Quantitative PCR detection and improved sample preparation of microcystin-producing Anabaena, Microcystis and Planktothrix. Ecotox. Environ. Safe., 87, 49-56.
Keywords: Microcystin; Cyanobacteria; Quantitative PCR; mcyB; Sample prepararion
Strain(s): 107 
DOI: 10.1016/j.ecoenv.2012.10.008
Hayakawa, T., Akita, Y., Arai, F. 2018 Parallel trapping of single motile cells based on vibration‑induced flow. Microfluid. Nanofluid., 22, 42 (article ID).
Keywords: Acoustofluidics; Cell manipulation; On-chip cell Manipulation; Vibration-induced flow; Motile cells
Strain(s): 48 
DOI: 10.1007/s1040 4-018-2062-4
Hayama, M., Nakada, T., Hamaji, T., Nozaki, H. 2010 Morphology, molecular phylogeny and taxonomy of Gonium maiaprilis sp. nov. (Goniaceae, Chlorophyta) from Japan. Phycologia, 49, 221-234.
Keywords: Chlorophyceae; Goniaceae; Gonium; Gonium maiaprilis sp. nov.; ITS; molecular phylogeny; morphology; rbcL; reproduction; taxonomy
Strain(s): 2455245624572458245924602461 
DOI: 10.2216/PH09-56.1
Hayashi, S., Jang, J. E., Itoh, K., Suyama, K., Yamamoto, H. 2011 Construction of river model biofilm for assessing pesticide effects. Arch. Environ. Contam. Toxicol., 60, 44-56.
Strain(s): 71803 
PubMed: 20422166
DOI: 10.1007/s00244-010-9531-4
Hayashi, S., Ohtani, S., Godo, T., Nojiri, Y., Saki, Y., Esumi, T., Kamiya, H. 2019 Identification of geosmin biosynthetic gene in geosmin-producing colonial cyanobacteria Coelosphaerium sp. and isolation of geosmin non-producing Coelosphaerium sp. from brackish Lake Shinji in Japan. Harmful Algae, 84, 19-26.
Keywords: Geosmin; Geosmin synthase gene; Coelosphaerium sp.Geosmin-producing and non-producing strains; Lake Shinji
Strain(s): 447344744475 
PubMed: 31128804
DOI: 10.1016/j.hal.2019.01.010
Hayashi, T., Otaki, R., Hirai, K., Tsuzuki, M., Sato, N. 2017 Optimization of seawater-based triacylglycerol accumulation in a freshwater green alga, Chlorella kessleri, through simultaneous imposition of loweredtemperature and enhanced-light intensity. Algal Res., 28, 100-107.
Keywords: Chlorella kessleri; Freshwater green algae; Low temperature; Moderate light; Seawater; Triacylglycerol
Strain(s): 2152 
DOI: 10.1016/j.algal.2017.10.016
Hayashida, G., Schneider, C., Espíndola, L., Arias, D., Riquelme, C., Wulff-Zottele, C., Díaz-Palma, P., Rivas, M. 2017 Characterization of a Chlorophyta microalga isolated from a microbial mat in Salar de Atacama (northern Chile) as a potential source of compounds for biotechnological applications. Phycol. Res., 65, 202-211.
Keywords: Altiplane; Chlorella sorokiniana; extreme tolerant; microalgae; microbial mat; oleaginous strain, polyunsaturated; fatty acid; stearic acid
Strain(s): 2173 
DOI: 10.1111/pre.12176
Hayashi-Ishimaru, Y., Ehara, M., Inagaki, Y., Ohama, T. 1997 A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan. Curr. Genet., 32, 296-299.
Keywords: Prymnesiophyta; deviant genetic code; cytochrome c oxidase subunit I; the codon-capture theory
Strain(s): 8353388 
PubMed: 9342410
DOI: 10.1007/s002940050280
Hayashi-Ishimaru, Y., Ohama, T., Kawatsu, Y., Nakamura, K., Osawa, S. 1996 UAG is a sense codon in several chlorophycean mitochondria. Curr. Genet., 30, 29-33.
Keywords: deviant genetic code; COXI; Chlorophyceaen mitochondria; release factor
Strain(s): 96209227415 
PubMed: 8662206
DOI: 10.1007/s002940050096
Hazraty-Kari, S., Masaya, M., Kawachi, M., Harii, S. 2022 The early acquisition of symbiotic algae benefits larval survival and juvenile growth in the coral Acropora tenuis. J. Exp. Zool. Part A-Ecol. Integr. Physiol., 337, 559-565.
Keywords: juveniles; larvae; lipids; scleractinia; symbionts
Strain(s): 2907 
PubMed: 35286770
DOI: 10.1002/jez.2589
Hee-jin, C., Baik-ho, K., Jeong-dong, K., Myung-soo, H. 2005 Streptomyces neyagawaensis as a control for the hazardous biomass of Microcystis aeruginosa (Cyanobacteria) in eutrophic freshwaters. Biol. Control, 33, 335-343.
Keywords: Antialgal bacterium; Streptomyces neyagawaensis; Microcystis aeruginosa; Biological control; Freshwater; Cyanobacterial bloom
Strain(s): 298 
DOI: 10.1016/j.biocontrol.2005.03.007
Hepperle, D., Nozaki, H., Hohenberger, S., Huss, V. A. R., Morita, E., Krienitz, L. 1998 Phylogenetic position of the Phacotaceae within the Chlamydophyceae as revealed by analysis of 18S rDNA and rbcL sequences. J. Mol. Evol., 47, 420-430.
Keywords: Phacotaceae; Volvocales; 18S rDNA phylogeny; lorica-bearing flagellates; green algae
Strain(s): 446858859861862 
PubMed: 9767687
DOI: 10.1007/PL00006399
Higashiyama, T. & Yamada, T. 1991 Electrophoretic karyotyping and chromosomal gene mapping of Chlorella. Nucleic Acids Res., 19, 6191-6195.
Strain(s): 2163216621712189 
PubMed: 1956777
DOI: 10.1093/nar/19.22.6191
Higo, A., Kawashima, T., Borg, M., Zhao, M., López-Vidriero, I., Sakayama, H., Montgomery, S, A., Sekimoto, H., Hackenberg, D., Shimamura, M., Nishiyama, T., Sakakibara, K., Tomita, Y., Togawa, T., Kunimoto, K., Osakabe, A., Suzuki, Y., Yamato, K. T., Ishizaki, K., Nishihama, R., Kohchi, T., Franco-Zorrilla, J. M., Twell, D., Berger, F., Araki, T. 2018 Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants. Nat. Commun., 9, 5283 (article ID).
Strain(s): 6768 
PubMed: 30538242
DOI: 10.1038/s41467-018-07728-3
Higuchi, R., Song, C., Hoshina, R., Suzaki, T. 2018 Endosymbiosis-related changes in ultrastructure and chemical composition of Chlorella variabilis (Archaeplastida, Chlorophyta) cell wall in Paramecium bursaria (Ciliophora, Oligohymenophorea). Eur. J. Protistol., 66, 149-155.
Keywords: Cell wall; Chlorella variabilis; GlycosaminoglycansParamecium bursaria; Symbiosis
Strain(s): 3374 
PubMed: 30286318
DOI: 10.1016/j.ejop.2018.09.003
Higuchi, S., Sugahara, F., Pascual-Anaya, J., Takagi, W., Oisi, Y., Kuratani, S. 2019 Inner ear development in cyclostomes and evolution of the vertebrate semicircular canals. Nature, 565, 347–350.
Strain(s): 3374 
PubMed: 30518864
DOI: 10.1038/s41586-018-0782-y
Hiki, K., Tsuchikawa, M., Nakajima, F., Tobino, T. 2019 Identification of antioxidant genes in the ostracod Heterocypris incongruens through de novo transcriptome sequencing. J. JSCE, 7, 133-142.
Keywords: Heterocypris incongruens, ostracod, antioxidant genes, de novo transcriptome, toxicity, road dust
Strain(s): 94 
DOI: 10.2208/journalofjsce.7.1_133
Hikihara, R., Yamasaki, Y., Shikata, T., Nakayama, N., Sakamoto, S., Kato, S., Hatate, H., Tanaka, R. 2020 Analysis of phytosterol, fatty acid, and carotenoid composition of 19 microalgae and 6 bivalve species. J. Aquat. Food Prod. Technol., 29, 461-479.
Keywords: Microalgae; bivalve; phytosterol; fucosterol; fatty acid
Strain(s): 110324 
DOI: 10.1080/10498850.2020.1749744
Hino, S. 1991 An examination of algal bioassay method for agricultural chemicals and heavy metals in a water environment. Hokkaido Kankyô Kagaku Kenkyû Sentâ Syohô, 18, 41-49 (in Japanese with English summary).
Strain(s): 228229 
Hirabaru, C., Izumo,A., Fujiwara, S., Tadokoro, Y., Shimonaga, T., Konishi, M., Yoshida, M., Fujita, N., Nakamura, Y., Yoshida, M., Kuroiwa, T., Tsuzuki, M. 2010 The primitive rhodophyte Cyanidioschyzon merolae contains a semiamylopectin-type, but not an amylose-type, α-glucan. Plant Cell Physiol., 51, 682-693.
Keywords: Amylose; Cyanidioschyzon; Floridean starch; Glycogen; Starch synthase; Semiamylopectin
Strain(s): 551 
PubMed: 20385610
DOI: 10.1093/pcp/pcq046
Hirabayashi, R. & Imamura, N. 2003 Action mechanism of a selective anti-cyanobacterial compound, argimicin A. J. Antibiotics, 56, 154-159.
Strain(s): 414581102204230298592 
PubMed: 12715875
DOI: 10.7164/antibiotics.56.154
Hirai, A., Nishimura, T., Iwamura, T. 1979 Synthetic rates of chloroplast and cytoplasmic ribosomal ribonucleic acids during the cell cycle of Chlorella. Plant Cell Physiol., 20, 93-102.
Keywords: cell cycle; Chlorella; chloroplast rRNA; cytoplasmic rRNA; RNA synthesis; radioisotopic precursor
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a075810
Hiraide, R., Kawai-Toyooka, H., Hamaji, T ., Matsuzaki, R., Kawafune, K., Abe, J., Sekimoto, H., Umen, J., Nozaki, H. 2013 The evolution of male–female sexual dimorphism predates the gender-based divergence of the mating locus gene MAT3/RB. Mol. Biol. Evol., 30, 1038-1040.
Keywords: gender-based divergence; gene conversion; male–female sexual dimorphism; MAT3/RB, mating type locus; volvocine algae
Strain(s): 722733866171017111859186139854018 
PubMed: 23364323
DOI: 10.1093/molbev/mst018
Hiramatsu, K., Ideguchi, T., Yonamine, Y., Lee, S. W., Luo, Y., Hashimoto, K., Ito, T., Hase, M., Park, J.-W., Kasai, Y., Sakuma, S., Hayakawa, T., Arai, F., Hoshino, Y., Goda, K. 2019 High-throughput label-free molecular fingerprinting flow cytometry. Sci. Adv., 5, eaau0241 (article ID).
Strain(s): 481444141 
PubMed: 30746443
DOI: 10.1126/sciadv.aau0241
Hirano, H., Iguchi, M., Nishimura, T., Iwamura, T. 1986 Isolation of high molecular weight cellular DNA with a novel granulated hydroxyapatite. Agric. Biol. Chem., 50, 219-221.
Strain(s): 2170 
Hirano, H., Takeda, Y., Iwamura, T. 1986 Unique repetitive sequences of 170 bp in Chlorella. Plant Mol. Biol., 7, 311-317.
Keywords: Chlorella; HaeIII family; repetitive sequence; tandem repeat
Strain(s): 21602170 
PubMed: 24302372
DOI: 10.1007/BF00752903
Hirano, M., Mori, H., Miura, Y., Matsunaga, N., Nakamura, N., Matsunaga, T. 1990 γ-linolenic acid production by microalgae. Appl. Biochem. Biotechnol., 24/25, 183-191.
Keywords: g-linolenic acid; Spirulina platensis; green algae; lipid; marine microalgae
Strain(s): 39 
DOI: 10.1007/BF02920244
Hirano, N., Marukawa, Y., Abe, J., Hashiba, S., Ichikawa, M., Tanabe, Y., Ito, M., Nishii, I., Tsuchikane, Y., Sekimoto, H. 2015 A receptor-like kinase, related to cell wall sensor of higher plants, is required for sexual reproduction in the unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 56, 1456-1462.
Keywords: Cell wall; Charophycean alga; Closterium peracerosum–strigosum–littorale complex; CrRLK1L-1; Receptor-like kinase; Sexual reproduction
Strain(s): 6768 
PubMed: 25941232
DOI: 10.1093/pcp/pcv065
Hirano, T., Masho, R., Koizumi, D., Tabata, S., Suzuki, K., Sakabe, M., Nakano, Y., Sato, N., Sudo, R. 2006 Ecotoxicity testing of bioremediation agents for shoreline oil-spill clean up. Jpn. J. Environ. Toxicol., 9, 115-131.
Keywords: ecotoxicity; bioremediation; oil-spill; acute toxicity; marine organisms
Strain(s): 324 
DOI: 10.11403/jset.9.115
Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID).
Strain(s): 2202220722122242 
PubMed: 27688324
DOI: 10.1128/genomeA.01070-16
Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N. 2017 Characterization of phosphoethanolamine-N-methyltransferases in green algae. Biochem. Biophys. Res. Commun., 488, 141-146.
Keywords: Green algal evolution; Chlamydomonas; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase
Strain(s): 22022207221222352242 
PubMed: 2848352
DOI: 10.1016/j.bbrc.2017.05.026
Hirashima, T., Toyoshima, M., Moriyama, T., Sato, N. 2018 Evolution of the phosphatidylcholine biosynthesis pathways in green algae: Combinatorial diversity of methyltransferases. J. Mol. Evol., 86, 68-76.
Keywords: Chlamydomonas; Metabolic diversity; Phosphatidylcholine biosynthesis; Phosphoethanolamine-N-methyltransferase; Phospholipid-N-methyltransferase
Strain(s): 2202220722122242 
PubMed: 29330556
DOI: 10.1007/s00239-017-9826-4
Hirata, K., Phunchindawan, M., Tukamoto, J., Goda, S., Miyamoto, K. 1996 Cryopreservation of microalgae using encapsulation-dehydration. CryoLetters, 17, 321-328.
Keywords: Dunaliella tertiolecta; microalgae; cryopreservation; encapsulation-dehydration
Strain(s): 8192224273244242375396422437 
Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K. 2017 Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii. Acta Crystallogr. F-Struct. Biol., F73, 86-89.
Keywords: D-threonine aldolase; Chlamydomonas reinhardtii; D-amino acids; crystallization
Strain(s): 2237 
PubMed: 28177318
DOI: 10.1107/S2053230X1602063X
Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K. 2017 Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii. Phytochemistry, 135, 18-23.
Keywords: Chlamydomonas reinhardtii; Chlamydomonadaceae; Green alga; Enzyme characterization; d-Amino acid; d-Threonine aldolase; Pyridoxal 5’-phosphate
Strain(s): 2237 
PubMed: 28038776
DOI: 10.1016/j.phytochem.2016.12.012
Hirayama, A., Sueyoshi, M. N., Nakano, T., Ota, Y., Kurita, H., Tasaki, M., Kuroiwa, Y., Kato, T., Serizawa, S., Kojima, K., Al-Maamari, R. S., Hasegawa, T., Thomas-Hall, S. R., Schenk, P. M. 2022 .Development of large-scale microalgae production in the Middle East. Bioresour. Technol., 343, 126036 (article ID).
Keywords: Chlorella sorokiniana; Large-scale microalgae production; Outdoor raceway ponds; Photobioreactor; Water temperature control
Strain(s): 2169 
PubMed: 34626761
DOI: 10.1016/j.biortech.2021.126036
Hiroishi, S., Nakai, R., Seto, H., Yoshida, T., Imai, I. 2002 Identification of Heterocapsa circularisquama by means of antibody. Fish. Sci., 68, Suppl., 627-628.
Keywords: identification; Heterocapsa; dinoflagellate; antibody
Strain(s): 7235472473 
DOI: 10.2331/fishsci.68.sup1_627
Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1988 A new method for identification of inter- and intra-species of the red tide algae Chattonella antiqua and Chattonella marina (Raphidophyceae) by means of monoclonal antibodies. J. Phycol., 24, 442-444.
Keywords: Chattonella; identification; immunofluorescence; inter-species; intra-species; method; monoclonal antibody; red tide
Strain(s): 121483848586113114115116118121 
DOI: 10.1111/j.1529-8817.1988.tb04488.x
Hiroishi, S., Uchida, A., Nagasaki, K., Ishida, Y. 1989 A new method for inter- and intra-species identification of red tide algae Chattonella antiqua and Chattonella marina by means of monoclonal antibodies. In Red Tides: Biology, Environmental Science, and Toxicology, Eds. by Okaichi, T., Anderson, D. M. & Nemoto, T., Elsevier Science Pub., New York, pp. 299-300.
Strain(s): 8586118121 
Hirokawa, T. & Takeda, H. 1980 Automatic analysing system for the liquid chromatography. J. Gen. Edu. Dept., Niigata Univ., 10, 97-106.
Strain(s): 2262170 
Hirokawa, T., Hata, M., Takeda, H. 1982 Correlation between the starch level and the rate of starch synthesis during the developmental cycle of Chlorella ellipsoidea. Plant Cell Physiol., 23, 813-820.
Keywords: 14C-fixation; cell cycle; Chlorella ellipsoidea; photosynthesis; starch accumulation; starch synthesis; synchronous culture
Strain(s): 2170 
Hirokawa, T., Miyachi, S., Tamiya, H. 1958 Effect of hydrogen peroxide on the light-induced capacity of carbon dioxide-fixation in green algae. J. Biochem., 45, 1005-1010.
Strain(s): 2170 
Hiroki, M., Shimizu, A., Li, R., Watanabe, M., Watanabe, M. M. 1998 Development of a database system useful for identification of Anabaena spp. (Cyanobacteria). Phycol. Res., 46, Suppl., 85-93.
Keywords: Anabaena; computer; cyanobacteria; database system; identification; morphology
Strain(s): 810819826835 
DOI: 10.1111/j.1440-1835.1998.tb00276.x
Hoshina, R. & Nakada, T. 2018 Carolibrandtia nom. nov. as a replacement name for Brandtia Hoshina (Chlorellaceae, Trebouxiophyceae). Phycol. Res., 66, 82-83.
Keywords: Chlorella-like alga; ciliate; later homonym; nomenclature; photobiont; symbiosis
Strain(s): 403240334034 
DOI: 10.1111/pre.12208
Hirooka, S., Itabashi, T., Ichinose, T. M., Onuma, R., Fujiwara, T., Yamashita, S., Jong, L. W., Tomita, R., Iwane, A. H., Miyagishima, S. 2022 Life cycle and functional genomics of the unicellular red alga Galdieria for elucidating algal and plant evolution and industrial use. Proc. Natl. Acad. Sci. U. S. A., 119, e2210665119 (article ID).
Keywords: Galdieria; sexual reproduction; homeobox; actin; microalgae
Strain(s): 550 
PubMed: 36194630
DOI: 10.1073/pnas.2210665119
Hirooka, S., Tomita, R., Fujiwara, T., Ohnuma, M., Kuroiwa, H., Kuroiwa, T., Miyagishima, S. 2020 Efficient open cultivation of cyanidialean red algae in acidified seawater. Sci Rep, 10, 13794 (article ID).
Strain(s): 21373377 
PubMed: 32839467
DOI: 10.1038/s41598-020-70398-z
Hirooka, T., Akiyama, Y., Tsuji, N., Nakamura, T., Nagase, H., Hirata, K., Miyamoto, K. 2003 Removal of hazardous phenols by microalgae under photoautotrophic conditions. J. Biosci. Bioeng., 95, 200-203.
Keywords: green algae; cyanobacteria; nitrophenol; chlorophenol; bisphenol A; photoautotrophic conditions
Strain(s): 192344422437 
PubMed: 16233393
DOI: 10.1016/S1389-1723(03)80130-5
Hirooka, T., Nagase, H., Hirata, K., Miyamoto, K. 2006 Degradation of 2,4-dinitrophenol by a mixed culture of photoautotrophic microorganisms. Biochem. Eng. J., 29, 157-162.
Keywords: 2,4-Dinitrophenol; 2-Amino-4-nitrophenol; Anabaena variabilis; Anabaena cylindrica; Mixed culture
Strain(s): 19233284 
DOI: 10.1016/j.bej.2005.03.018
Hirosawa, T. 1984 Near-UV and blue light effects in cyanobacteria. In Blue Light Effects in Biological Systems, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 39-47.
Strain(s): 193720933277 
Hirose, M., Reimer, J. D., Hidaka, M., Suda, S. 2008 Phylogenetic analyses of potentially free-living Symbiodinium spp. Isolated from coral reef sand in Okinawa, Japan. Mar. Biol., 155, 105-112.
Strain(s): 263826392640264126422643 
DOI: 10.1007/s00227-008-1011-2
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46.
Keywords: Cyanobacteria; Genome; Photosensor; Thermophile
Strain(s): 3754 
PubMed: 26784989
DOI: 10.1016/j.jbiotec.2016.01.011
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Leptolyngbya sp. NIES-3755. GenomeA, 4, e00090-16 (article ID).
Strain(s): 3755 
PubMed: 26988037
DOI: 10.1128/genomeA.00090-16
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52.
Strain(s): 3756 
PubMed: 26656223
DOI: 10.1016/j.jbiotec.2015.12.002
Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015a Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3708, which performs type II complementary chromatic acclimation. GenomeA, 3, e00357-15 (article ID).
Strain(s): 3708 
PubMed: 25953174
DOI: 10.1128/genomeA.00357-15
Hirose, Y., Katayama, M., Ohtsubo, Y., Misawa, N., Iioka, E., Suda, W., Oshima, K., Hanaoka, M., Tanaka, K., Eki, T., Ikeuchi, M., Kikuchi, Y., Ishida, M., Hattori, M. 2015b Complete genome sequence of cyanobacterium Geminocystis sp. strain NIES-3709, which harbors a phycoerythrin-rich phycobilisome. GenomeA, 3, e00385-15 (article ID).
Strain(s): 3709 
PubMed: 25931605
DOI: 10.1128/genomeA.00385-15
Hirose, Y., Misawa, N., Yonekawa, C., Nagao, N., Watanabe, M., Ikeuchi, M., Eki, T. 2017 Characterization of the genuine type 2 chromatic acclimation in the two Geminocystis cyanobacteria. DNA Res., 24, 387-396.
Keywords: Cyanobacteria; chromatic acclimation; phycobilisome; cyanobacteriochrome
Strain(s): 37083709 
PubMed: 28338901
DOI: 10.1093/dnares/dsx011
Hirose, Y., Ohtsubo, Y., Misawa, N., Yonekawa, C., Nagao, N., Shimura, Y., Fujisawa, T., Kanesaki, Y., Katoh, H., Katayama, M., Yamaguchi, H., Yoshikawa, H., Ikeuchi, M., Eki, T., Nakamura, Y., Kawachi, M. 2021 Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade. DNA Res., 28, dsab024 (article ID).
Keywords: Cyanobacteria; genome; heterocyst; culture collection; taxonomy
Strain(s): 1921222325375073267806932209821002107210921112130213532753585375739744073407440754101410241034106 
PubMed: 34677568
DOI: 10.1093/dnares/dsab024
Hiwatari, T., Kasai, F., Watanabe, M. M., Nei, T. 1984 Cryopreservation of Scenedesmus acutus and Pediastrum duplex in liquid nitrogen - Survival and growth after freezing. Jpn. J. Freez. Dry., 30, 27-31 (in Japanese with English title).
Strain(s): 95213 
Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S. 2012 Detection and identification of potentially toxic cyanobacteria: Ubiquitous distribution of Microcystis aeruginosa and Cuspidothrix issatschenkoi in Japanese lakes. Harmful Algae, 16, 49-57.
Keywords: Anatoxin-a; Automated rRNA intergenic spacer analysis (ARISA); Cuspidothrix issatschenkoi; Cyanotoxin; Microcystin; Microcystis aeruginosa
Strain(s): 304077102111230512843905928932937991164516691698172919502116 
DOI: 10.1016/j.hal.2012.01.003
Hodoki, Y., Ohbayashi, K., Kobayashi, Y., Okuda, N., Nakano, S.-I. 2011 Temporal variation in cyanobacteria species composition and photosynthetic activity in experimentally induced blooms. J. Plankton Res., 33, 1410-1416.
Keywords: cyanobacterial bloom; DCMU [3'-(3,4-dichlorophenyl)-1',1'-dimethyl urea]; maximum quantum yieldMicrocystis aeruginosa
Strain(s): 843 
DOI: 10.1093/plankt/fbr040
Hoef-Emden, K. 2012 Pitfalls of establishing DNA barcoding systems in protists: the cryptophyceae as a test case. PLoS One, 7, e43652 (article ID).
Strain(s): 27470670871171271371410041370 
PubMed: 22970104
DOI: 10.1371/journal.pone.0043652
Hoef-Emden, K. 2014 Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas clade. Protist, 165, 123-143.
Keywords: Chroomonas; contractile vacuole; cryptomonads; floridoside; osmolarity; osmoregulation; osmotolerance; phylogeny
Strain(s): 7087127137141004 
PubMed: 24568876
DOI: 10.1016/j.protis.2014.01.001
Hoef-Emden, K. 2018 Revision of the genus Chroomonas HANSGIRG: The benefits of DNA-containing specimens. Protist, 169, 662-681.
Keywords: Chroomonas; novel species; phylogeny; ancient DNA; revision; Cryptophyceae
Strain(s): 7087121004 
PubMed: 30125802
DOI: 10.1016/j.protis.2018.04.005
Hoef-Emden, K., Melkonian, M. 2003 Revision of the genus Cryptomonas (Cryptophyceae): a combination of molecular phylogeny and morphology provides insights into a long-hidden dimorphism. Protist, 154, 371-409.
Strain(s): 274276279 
PubMed: 14658496
DOI: 10.1078/143446103322454130
Hogetsu, D. & Miyachi, S. 1970 Effect of oxygen on the light-enhanced dark carbon dioxide fixation in Chlorella cells. Plant Physiol., 45, 178-182.
Strain(s): 2170 
PubMed: 16657299
DOI: 10.1104/pp.45.2.178
Hogetsu, D. & Miyachi, S. 1977 Effects of CO2 concentration during growth on subsequent photosynthetic CO2 fixation. Plant Cell Physiol., 18, 347-352.
Strain(s): 2160 
Hogetsu, D. & Miyachi, S. 1979 Role of carbonic anhydrase in photosynthetic CO2 fixation in Chlorella. Plant Cell Physiol., 20, 747-756.
Keywords: carbonic anhydrase; Chlorella; CO2 fixation; photosynthesis; ribulose 1,5-bisphosphate carboxylase
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a075865
Honda, D., Yokota, A., Sugiyama, J. 1999 Detection of seven major evolutionary lineages in cyanobacteria based on the 16S rRNA gene sequence analysis with new sequences of five marine Synechococcus strains. J. Mol. Evol., 48, 723-739.
Keywords: cyanobacteria; Synechococcus; phylogeny; ribosomal RNA; maximum-likelihood method; neighbor-joining method; rate homo- and heterogeneous models
Strain(s): 27208510211621182119 
PubMed: 10229577
DOI: 10.1007/PL00006517
Honda, R., Boonnorat, J., Chiemchaisri, C., Chiemchaisri, w., Yamamoto, K. 2012 Carbon dioxide capture and nutrients removal utilizing treated sewage by concentrated microalgae cultivation in a membrane photobioreactor. Bioresour. Technol., 125, 59-64.
Keywords: Carbon dioxide capture; Nutrients removal; Membrane photobioreactor; Microalgae; Botryococcus braunii
Strain(s): 2199 
PubMed: 23023237
DOI: 10.1016/j.biortech.2012.08.138
Honda, R., Rukapan, W., Komura, H., Teraoka, Y., Noguchi, M., Hoek, E.M.V. 2015 Effects of membrane orientation on fouling characteristics of forward osmosis membrane in concentration of microalgae culture. Bioresour. Technol., 197, 429-433.
Keywords: Forward osmosis; Microalgae; Membrane fouling; Extracellular polymeric substances (EPS)
Strain(s): 2170 
PubMed: 26356114
DOI: 10.1016/j.biortech.2015.08.096
Honda, R., Teraokab, Y., Noguchia, M., Yang, S. 2017 Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor. J. Water Environ. Technol., 15, 1-11.
Keywords: membrane photobioreactor; microalgae; resource recovery from wastewater
Strain(s): 2170 
DOI: 10.2965/jwet.15-085
Honda, T., Takahashi, H., Sako, Y., Yoshida, T. 2014 Gene expression of Microcystis aeruginosa during infection of cyanomyovirus Ma-LMM01. Fish. Sci., 80, 83-91.
Keywords: Cyanophage; Ma-LMM01; Microcystis aeruginosa; Transcriptional regulation; Auxiliary; metabolic genes
Strain(s): 298 
DOI: 10.1007/s12562-013-0685-7
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa. Fish. Sci., 78, 375-379.
Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ
Strain(s): 298 
DOI: 10.1007/s12562-011-0442-8
Hondo, S., Takahashi, M., Osanai, T., Matsuda, M., Hasunuma, T., Tazuke, A., Nakahira, Y., Chohnan, S., Hasegawa, M., Asayama, M. 2015 Genetic engineering and metabolite profiling for overproduction of polyhydroxybutyrate in cyanobacteria. J. Biosci. Bioeng., 120, 510-517.
Keywords: Acetyl-CoA; Cyanobacteria; Metabolite analysis; Nitrogen depletion; Polyhydroxybutyrate
Strain(s): 843 
PubMed: 26055446
DOI: 10.1016/j.jbiosc.2015.03.004
Hong, J. W., Kim, O. H., Jo, S. W., Kim, H., Jeong, M. R., Yoon, H. S. 2018 Characterization of alkane-producing Nostoc sp. isolated from a summer bloom for biofuel potential. J. Biobased Mater. Bioenergy, 12, 244-251.
Keywords: Alkane-Producing Genes; Biofuel; Cyanobacteria; Heptadecane; Potential; Feedstoc
Strain(s): 212109 
DOI: 10.1166/jbmb.2018.1757
Hong, M. E., Choi, S. P., Park, Y. I., Kim, Y. K., Chang, W. S., Kim, B. W., Sim, S. J. 2012 Astaxanthin production by a highly photosensitive Haematococcus mutant. Process Biochem., 47, 1972–1979.
Keywords: Haematococcus pluvialis; Astaxanthin; Photo-inducible mutant; Photo-sensitivity
Strain(s): 144 
DOI: 10.1016/j.procbio.2012.07.007
Hong, M. E.1, Choi, H. I., Kwak, H. S., Hwang, S. W., Sung, Y. J., Chang, W. S., Sim, S. J. 2018 Rapid selection of astaxanthin-hyperproducing Haematococcus mutant via azide-based colorimetric assay combined with oil-based astaxanthin extraction. Bioresour. Technol., 267, 175-181.
Keywords: Haematococcus pluvialis; Autotrophic astaxanthin production; High-throughput screening; Azide-based colorimetric assay; Oil-based astaxanthin extraction method
Strain(s): 144 
PubMed: 30014996
DOI: 10.1016/j.biortech.2018.07.033
Hong, M.-E., Choi, Y. Y., Sim, S. J. 2016 Effect of red cyst cell inoculation and iron (II) supplementation on autotrophic astaxanthin production by Haematococcus pluvialis under outdoor summer conditions. J. Biotechnol., 218, 25–33.
Keywords: Haematococcus pluvialis; Photoautotrophic culture; Astaxanthin; Summer outdoor conditions; Red cyst cell (aplanospore) inoculation method; Iron(Fe2+) supplementation method
Strain(s): 144 
PubMed: 26630998
DOI: 10.1016/j.jbiotec.2015.11.019
Hongo, Y., Hano, T., Yamaguchi, H., Tamaru, Y. 2023 Transcriptional responses of the marine diatom Chaetoceros tenuissimus to phosphate deficiency. Gene, 884, 147695 (article ID).
Keywords: Phosphorus-deficiency; Differentially expressed genes; RNA-seq; Nonphospholipid; Alkaline phosphatase; Diatom
Strain(s): 3715 
PubMed: 37549856
DOI: 10.1016/j.gene.2023.147695
Hongo, Y., Kimura, K., Takaki, Y., Yoshida, Y., Baba, S., Kobayashi, G., Nagasaki, K., Hano, T., Tomaru, Y. 2021 The genome of the diatom Chaetoceros tenuissimus carries an ancient integrated fragment of an extant virus. Sci Rep, 11, 22877 (article ID).
Strain(s): 3715 
PubMed: 34819553
DOI: 10.1038/s41598-021-00565-3
Honjo, M., Matsui, K., Ueki, M., Nakamura, R., Fuhrman, J. A., Kawabata, Z. 2006 Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond. J. Plankton Res., 28, 407-412.
Strain(s): 298 
DOI: 10.1093/plankt/fbi128
Hoppenrath, M., Yubuki, N., Stern, R., Leander, B. S. 2017 Ultrastructure and molecular phylogenetic position of a new marine sand-dwellin dinoflagellate from British Columbia, Canada: Pseudadenoides polypyrenoides sp. nov. (Dinophyceae). Eur. J. Phycol., 52, 208-224.
Keywords: Clone libraries; depth gradient; microscopy; NGS library; oxyphotobacteriav; stromatolites; taxonomy
Strain(s): 1367 
DOI: 10.1080/09670262.2016.1274788
Hori, K. Maruyama, F., Fujisawa, T., Togashi, T., Yamamoto, N., Seo, M., Sato, S., Yamada, T., Mori, H., Tajima, N., Moriyama, T., Ikeuchi, M., Watanabe, M., Wada, H., Kobayashi, K., Saito, M., Masuda, T., Sasaki-Sekimoto, Y., Mashiguchi, K., Awai, K., Shimojima, M., Masuda, S., Iwai, M., Nobusawa, T., Narise, T., Kondo, S., Saito, H., Sato, R., Murakawa, M., Ihara, Y., Oshima-Yamada, Y., Ohtaka, K., Satoh, M., Sonobe, K., Ishii, M., Ohtani, R., Kanamori-Sato, M., Honoki, R., Miyazaki, D., Mochizuki, H., Umetsu, J., Higashi, K., Shibata, D., Kamiya, Y., Sato, N., Nakamura, Y., Tabata, S., Ida, S., Kurokawa, K., Ohta, H. 2014 Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation. Nat. Commun., 5, 3978 (article ID).
Strain(s): 2285 
PubMed: 24865297
DOI: 10.1038/ncomms4978
Hori, S., Sekimoto, H., Abe, J. 2012 Properties of cell surface carbohydrates in sexual reproduction of the Closterium peracerosum–strigosum–littorale complex (Zygnematophyceae, Charophyta). Phycol. Res., 60, 254-260.
Keywords: cell-cell recognition; Closterium; ConcanavalinA; conjugation; lectin; Lycopersicon esculentum lectin; sexual reproduction
Strain(s): 6768 
DOI: 10.1111/j.1440-1835.2012.00656.x
Horiguchi, T. 1996 Haramonas dimorpha gen. et sp. nov. (Raphidophyceae), a new marine raphidophyte from Australian mangrove. Phycol. Res., 44, 143-150.
Keywords: Haramonas dimorpha gen et sp. nov.; mangrove; Raphidophyceae; taxonomy; tubular invagination; ultrastructure
Strain(s): 716 
DOI: 10.1111/j.1440-1835.1996.tb00043.x
Hoshina, R. & Imamura, N. 2009 Phylogenetically close group I introns with different positions among Paramecium bursaria photobionts imply a primitive stage of intron diversification. Mol. Biol. Evol., 26, 1309-1319.
Keywords: degenerative homing; intron diversification; intron transposition; Paramecium bursaria symbiotic algae; reverse splicing
Strain(s): 2541 
PubMed: 19279084
DOI: 10.1093/molbev/msp044
Hoshina, R. & Fujiwara, Y. 2013 Molecular characterization of Chlorella cultures of the National Institute for Environmental Studies culture collection with description of Micractinium inermum sp. nov., Didymogenes sphaerica sp. nov., Didymogenes soliella sp. nov., (Chlorellaceae, Trebouxiophyceae). Phycol. Res., 61, 124-132.
Keywords: Chlorella; Didymogenes; group 1 intron; internal transcribed spacer 2; Micractinium; species concept
Strain(s): 2167217121732330 
DOI: 10.1111/pre.12010
Hoshina, R., Hayakawa, M. M., Kobayashi, M., Higuchi, R., Suzaki, T. 2020 Pediludiella daitoensis gen. et sp. nov. (Scenedesmaceae, Chlorophyceae), a large coccoid green alga isolated from a Loxodes ciliate. Sci Rep, 10, 628 (article ID).
Strain(s): 4031 
PubMed: 31959793
DOI: 10.1038/s41598-020-57423-x
Hoshina, R. & Imamura, N. 2008 Eu-Chlorella large subunit rDNA sequences and group I introns in ribosomal DNA of the paramecian symbiotic alga NC64A. Phycol. Res., 56, 21-32.
Keywords: Chlorella vulgaris; group I intron; intron phylogeny; intron transposition; large subunit ribosomal DNA; NC64A
Strain(s): 227 
DOI: 10.1111/j.1440-1835.2008.00481.x
Hoshina, R., Iwataki, M., Imamura, N. 2010 Chlorella variabilis and Micractinium reisseri sp. nov. (Chlorellaceae, Trebouxiophyceae): Redescription of the endosymbiotic green algae of Paramecium bursaria (Peniculia, Oligohymenophorea) in the 120th year. Phycol. Res., 58, 188-201.
Keywords: Chlorella variabilis; ITS2; Micractinium reisseri; Paramecium bursaria; species concept
Strain(s): 25402542 
DOI: 10.1111/j.1440-1835.2010.00579.x
Hoshina, R., Kamako, S.-I., Imamura, N. 2004 Phylogenetic position of endosymbiotic green algae in Paramecium bursaria Ehrenberg from Japan. Plant Biol., 6, 447-453.
Keywords: 18S rDNA; Chlorella; endosymbiont; ITS; Paramecium bursaria; phylogeny
Strain(s): 25402541 
DOI: 10.1055/s-2004-820888
Hoshina, R., Kato, Y., Kamako, S., Imamura, N. 2005 Genetic evidence of "American" and "European" type symbiotic algae of Paramecium bursaria Ehrenberg. Plant Biol., 7, 526-532.
Keywords: 18S rDNA; "American"; "European"; Chlorella; ITS; Paramecium bursaria; Phylogeny
Strain(s): 25402541 
DOI: 10.1055/s-2005-865912
Hoshina, R., Kobayashi, M., Suzaki, T., Kusuoka, Y. 2018 Brandtia ciliaticola gen. et sp. nov. (Chlorellaceae, Trebouxiophyceae) a common symbiotic green coccoid of various ciliate species. Phycol. Res., 66, 76-81.
Keywords: Chlorella; genus definition; rRNA structure
Strain(s): 403240334034 
DOI: 10.1111/pre.12194
Hoshina, R., Tsukii, Y., Harumoto, T., Suzaki, T. 2021 Characterization of a green Stentor with symbiotic algae growing in an extremely oligotrophic environment and storing large amounts of starch granules in its cytoplasm. Sci Rep, 11, 2865 (article ID).
Strain(s): 3374 
PubMed: 33536497
DOI: 10.1038/s41598-021-82416-9
Hosoi-Tanabe, S. & Sako, Y. 2005 Species-specific detection and quantification of toxic marine Dinoflagellates Alexandrium tamarense and A. catenella by reai-time PCR assay. Mar. Biotechnol., 7, 506-514.
Keywords: toxic dinoflagellate; — Alexandrium; paralytic shellfish poisoning (PSP); real-time PCR; species-specific identification; quantification
Strain(s): 1712293331559603670 
PubMed: 16007374
DOI: 10.1007/s10126-004-4128-4
Hosoi-Tanabe, S., Honda, D., Fukaya, S., Otake, I., Inagaki, Y., Sako, Y. 2007 Proposal of Pseudochattonella verruculosa gen. nov., comb. nov. (Dictyochophyceae) for a formar rephidophycean alga Chattonella verruculosa, based on 18S rDNA phylogeny and ultrastructural characteristics. Phycol. Res., 55, 185-192.
Keywords: Chatonella verruculosa; Dictyochophyceae; flagellar apparatus; harmful algal bloom; phylogenetic analysis; Pseudochattonella verruculosa; Raphidophyceae
Strain(s): 670 
DOI: 10.1111/j.1440-1835.2007.00461.x
Hosoi-Tanabe, S., Otake, I., Sako, Y. 2006 Phylogenetic analysis of noxious red tide flagellates Chattonella antiqua, C. marina, C. ovata, and C. verruculosa (Raphidophyceae) based on the rRNA gene family. Fish. Sci., 72, 1200-1208.
Keywords: Chattonella; genetic homogeneity; phylogenetic analysis; Raphidophyceae; rRNA gene family
Strain(s): 1586121558559603670 
DOI: 10.1111/j.1444-2906.2006.01277.x
Hosokawa, Y., Miki-Noumura, T. 1987 Bending motion of Chlamydomonas axonemes after extrusion of central-pair microtubules. J. Cell Biol., 105, 1297-1301.
Strain(s): 2239 
Hosomi, M. & Sudo, R. 1979 Studies on the effects of sediments on algal growth - Algal growth potential of sediments. Res. Rep. Natl. Inst. Environ. Stud., No. 6, 115-121 (in Japanese with English summary).
Strain(s): 35 
Hosoya, R., Hamana, K., Isobe, M., Yokota, A. 2005 Polyamine distribution profiles within Cyanobacteria. Microbiol. Cult. Coll., 21, 3-8.
Keywords: cyanobacteria; homospermidine; polyamine; spermidine
Strain(s): 19212228303437414445507378798081204208510512515592593610843846847209320962098210021022107210821182119212321242125212621282129213121323259327532763277 
Hou, X., Yan, Y., Wang, Y., Jiang, T., Zhang, X., Dai, X., Igarashi, Y., Luo, F., Yang, C. 2023 An insight into algicidal characteristics of Bacillus altitudinis G3 from dysfunctional photosystem and overproduction of reactive oxygen species. Chemosphere, 310, 136767 (article ID).
Keywords: Harmful cyanobacterial blooms; Photosynthesis; Electron transfer; ROS
Strain(s): 843 
PubMed: 36241112
DOI: 10.1016/j.chemosphere.2022.136767
Houdai, T., Matsuoka, S., Matsumori, N., Murata, M. 2004 Membrane-permeabilizing activities of amphidinol 3, polyene-polyhydroxy antifungal from a marine dinoflagellate. Biochem. Biophys. Acta, 1667, 91-100.
Keywords: amphidinol; Amphidinium klebsii; amphotericin B
Strain(s): 613 
PubMed: 15533309
DOI: 10.1016/j.bbamem.2004.09.002
Houdai, T., Matsuoka, S., Morsy, N., Matsumori, N., Satake, M., Murata, M. 2005 Hairpin conformation of amphidinols possibly accounting for potent membrane permeabilizing activities. Tetrahedron, 61, 2795-2802.
Keywords: amphidinol membrane-permeabilizaion
Strain(s): 613 
DOI: 10.1016/j.tet.2005.01.069
Houdai, T., Matsuoka, S., Murata, M., Satake, M., Ota, S., Oshima, Y., Rhodes, L. L. 2001 Acetate labeling patterns of dinoflagellate polyketides, amphidinols 2, 3 and 4. Tetrahedron, 57, 5551-5555.
Keywords: dinoflagellate; polyketides; biosynthesis; amphidinol; Amphidinium; isotopic labelling
Strain(s): 613 
DOI: 10.1016/S0040-4020(01)00481-1
Houndan, A., Billard, C., Marie, D., Not, F., Sáez, A. G., Young, J. R., Probert, I. 2003 Holococcolithophore-heterococcolithophore (Haptophyta) life cycles: flow cytometric analysis of relative ploidy levels. Systematics and Biodiversity, 4, 453-465.
Keywords: Coccolithophore; haplo-diploid; Haptophyta; heterococcolith; holococcolith; life cycle; microalgae; ploidy
Strain(s): 26942697 
DOI: 10.1017/S1477200003001270
Hovde, B. T., Deodato, C. R., Andersen, R. A., Starkenburg, S. R., Barlow, S.B., Cattolico, R.A. 2019 Chrysochromulina: Genomic assessment and taxonomic diagnosis of the type species for an oleaginous algal clade. Algal Res., 37, 307-319.
Keywords: Haptophyta; Chrysochromulina genome; nad evolution; FtsZ phylogeny; Meiosis; Taxon diagnosis
Strain(s): 562 
DOI: 10.1016/j.algal.2018.11.023
Howe, A. T., Bass, D., Vickerman, K., Chao, E. E., Cavalier-Smith, T. 2009 Phylogeny, taxonomy, and astounding genetic diversity of Glissomonadida ord. nov., the dominant gliding zooflagellates in soil (Protozoa: Cercozoa). Protist, 160, 159-189.
Keywords: Glissomonadida; Sandonidae; Allapsidae; Bodomorphidae; Heteromita; phylogeny
Strain(s): 24142415241824192421242224232424242524262427242824292430 
PubMed: 19324594
DOI: 10.1016/j.protis.2008.11.007
Htet, AN., Noguchi, M., Ninomiya, K., Tsuge, Y., Kuroda, K., Kajita, S., Masai, E., Katayama, Y., Shikinaka, K., Otsuka, Y., Nakamura, M., Honda, R., Takahashi, K. 2018 Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid. J. Biosci. Bioeng., 125, 717-722.
Keywords: Microalgae; Chlorella emersonii; Acid hydrolysis; Fermentation; Escherichia coli; 2-pyrone 4,6-dicarboxylic acid
Strain(s): 2151 
PubMed: 29395960
DOI: 10.1016/j.jbiosc.2017.12.026
Hu, ZY., Li, YT., Sommerfeld, M., Chen, F., Hu, Q. 2008 Enhanced protection against oxidative stress in an astaxanthin-overproduction Haematococcus mutant (Chlorophyceae). Eur. J. Phycol., 43, 365-376.
Keywords: astaxanthin; carotenogenesis; flow cytometry; Haematococcus pluvialis; oxidative stress; pigment mutant
Strain(s): 144 
DOI: 10.1080/09670260802227736
Hua, C., Ludsinb, S. A., Martinc, J. F., Dittmannd, E., Lee, J. 2018 Mycosporine-like amino acids (MAAs)—producing Microcystis in Lake Erie:Development of a qPCR assay and insight into its ecology. Harmful Algae, 77, 1–10.
Keywords: Shinorine; Porphyra; UV irradiation; Sunscreen; Eutrophication; Harmful algal bloom
Strain(s): 843 
PubMed: 30005796
DOI: 10.1016/j.hal.2018.05.010
Hua, J., Lee, R.W. 2012 Factors affecting codon bias in the mitochondrial genomes of the Streptophyte Mesostigma viride and the Chlorophyte Chlamydomonas reinhardtii. J. Eucaryot. Microbiol., 59, 287-289.
Keywords: Green algae; mutation; selection; synonymous codon usage
Strain(s): 296 
PubMed: 22340021
DOI: 10.1111/j.1550-7408.2011.00613.x
Hua, JM., Smith, D. R., Borza, T., Lee, R. W. 2012 Similar relative mutation rates in the three genetic compartments of Mesostigma and Chlamydomonas. Protist, 163, 105-115.
Keywords: Chlamydomonas; genome architecture; Mesostigma; mutation rate; silent substitution rate
Strain(s): 296476 
PubMed: 21621456
DOI: 10.1016/j.protis.2011.04.003
Huang, Y., Lee, H., Lai, C. 2013 Engineering of the growth environment of microalgae with high biomass and lipid productivity. J. Nanosci. Nanotechnol., 13, 2117-2121.
Keywords: Microalgae; Cultivation Environment; Carbon Dioxide; Biomass Productivity; Lipid Productivity
Strain(s): 2199 
DOI: 10.1166/jnn.2013.6877
Huang, Y.-T. & Su, C.-P. 2014 High lipid content and productivity of microalgae cultivating under elevated carbon dioxide. Int. J. Environ. Sci. Technol., 11, 703-710.
Keywords: Biodiesel; Chlorella; Global warming; Light intensity
Strain(s): 2173 
DOI: 10.1007/s13762-013-0251-y
Huang, Y-T., Lai, C-W., Wu, B-W., Lin, K-S., Wu, J.C.S., Md Shahriar A Hossain, Yamauchi, Y., Wu, C.-W. 2017 Advances in bioconversion of microalgae with high biomass and lipid productivity. J. Taiwan Inst. Chem. Eng., 79, 37-42.
Keywords: Bioconversion; Fatty acid; methyl esters; Illumination; Microalgae
Strain(s): 2199 
DOI: 10.1016/j.jtice.2017.05.026
Hunsperger, H. M., Randhawa, T., Cattolico, R. A. 2015 Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol. Biol., 15, 16 (article ID).
Keywords: Chlorophyll synthesis; Horizontal gene transfer; Endosymbiotic gene transfer; Gene duplication; Algae; Protochlorophyllide
Strain(s): 29336048413632140 
PubMed: 25887237
DOI: 10.1186/s12862-015-0286-4
Huss, V. A. R., Wein, K. H., Kessler, E. 1988 Deoxyribonucleic acid reassociation in the taxonomy of the genus Chlorella. Arch. Mikrobiol., 150, 509-511.
Strain(s): 2163 
Hwang, S. W., Choi, H. I., Sim, S. J. 2019 Acidic cultivation of Haematococcus pluvialis for improved astaxanthin production in the presence of a lethal fungus. Bioresour. Technol., 278, 138-144.
Keywords: Haematococcus pluvialis; Paraphysoderma sedebokerensis; Acidic cultivation; Stress relief; Astaxant
Strain(s): 144 
PubMed: 30685617
DOI: 10.1016/j.biortech.2019.01.080
Ichimura, T. 1971 Sexual cell division and conjugation-papilla formation in sexual reproduction of Closterium strigosum. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, pp. 208-214.
Strain(s): 66262 
Ichimura, T. 1973 Culture of microalgae (6). Iden, 27, 97-101 (in Japanese).
Strain(s): 66173175179180181183198262338450 
Ichimura, T. 1973 The life cycle and its control in some species of Closterium, with special reference to the biological species problems. Thesis D. Sci., University of Tokyo, 69 pp., 11 tables, 40 figs.
Strain(s): 666768125127174175176177179180181182183185198202262337338450451 
Ichimura, T. 1981 Mating types and reproductive isolation in Closterium ehrenbergii Meneghini. Bot. Mag. Tokyo, 94, 325-334.
Keywords: biosystematic study; Closterium ehrenbergii; mating group; mating type; reproductive isolation
Strain(s): 228229 
DOI: 10.1007/BF02493393
Ichimura, T. 1983 Hybrid inviability and predominant survival of mating type minus progeny in laboratory crosses between two closely related mating groups of Closterium ehrenbergii. Evolution, 37, 252-260.
Strain(s): 228229 
Ichimura, T. 1997 Chlamydomonas pulsatilla Wollenweber from a supra-littoral rockpool on a small island offshore the city of Muroran, Hokkaido, Japan. Algol. Stud., 85, 23-29.
Keywords: Chlamydomonas pulsatilla; euryhaline species; acetate; nutrition; supra-littoral rockpool
Strain(s): 122 
Ichimura, T. & Itoh, T. 1977 17. Preservation methods of microalgae (I) [17. Bisaisôrui no hozonhô (I)]. In Preservation methods of microorganisms [Biseibutsu Hozonhô], Ed. by Nei, T., University of Tokyo Press, Tokyo, pp. 355-373 (in Japanese).
Strain(s): 19212223242728303132333436373839404144454647484950122123127131144152173175179180181182183185198200203206217226227241266267268295309310334338379436448450455527 
Ichimura, T. & Kasai, F. 1984 Post-zygotic isolation between allopatric mating groups of Closterium ehrenbergii Meneghini (Conjugato-phyceae). Phycologia, 23, 77-85.
Strain(s): 228229 
DOI: 10.2216/i0031-8884-23-1-77.1
Ichimura, T. & Kasai, F. 1984 Time lapse analyses of sexual reproduction in Closterium ehrenbergii (Conjugatophyceae). J. Phycol., 20, 258-265.
Keywords: Closterium ehrenbergii; conjugation; desmids; mating type; sexual reproduction
Strain(s): 228229 
DOI: 10.1111/j.0022-3646.1984.00258.x
Ichimura, T. & Kasai, F. 1985 Studies on the life cycle of Spinoclosterium cuspidatum (Bailey) Hirano (Conjugatophyceae). Phycologia, 24, 205-216.
Strain(s): 325 
DOI: 10.2216/i0031-8884-24-2-205.1
Ichimura, T. & Kasai, F. 1987 Time-lapse analyses of sexual isolation between two closely related mating groups of the Closterium ehrenbergii species complex (Chlorophyta). J. Phycol., 23, 523-534.
Keywords: Closterium ehrenbergii; desmids; mating group; multiple-choice mating; no-choice mating; sexual interactions; sexual isolation; time-lapse photomicrography
Strain(s): 228229 
DOI: 10.1111/j.1529-8817.1987.tb04201.x
Ichimura, T. & Kasai, F. 1989 Life cycles of homothallic and heterothallic clones of Triploceras gracile Bailey (Desmidiaceae, Chlorophyta). Phycologia, 28, 212-221.
Strain(s): 789790791792793794795796 
DOI: 10.2216/i0031-8884-28-2-212.1
Ichimura, T. & Watanabe, M. 1974 The Closterium calosporum complex from the Ryukyu Islands - Variation and taxonomical problems. Mem. Natn. Sci. Mus. Tokyo, 7, 89-102, pls. 13-14.
Strain(s): 163164165168186187194339340341 
Ichimura, T. & Watanabe, M. M. 1977 An axenic clone of Microcystis aeruginosa Kutz. emend. Elenkin from Lake Kasumigaura. Bull. Jpn. Soc. Phycol., 25, 177-181.
Strain(s): 44 
Ichinomiya, M., Kuwata, A. 2015 Seasonal variation in abundance and species composition of the Parmales community in the Oyashio region, western North Pacific. Aquat. Microb. Ecol., 75, 207-223.
Keywords: Parmales; Seasonal variation; Species composition; Growth; Oyashio Current
Strain(s): 36993701 
DOI: 10.3354/ame01756
Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME J., 10, 2419-2434.
Strain(s): 25652682336933703371369937003701 
PubMed: 27003244
DOI: 10.1038/ismej.2016.38
Ichinomiya, M., Nakamachi, M., Shimizu, Y., Kuwata, A. 2013 Growth characteristics and vertical distribution of Triparma laevis (Parmales) during summer in the Oyashio region, western North Pacific. Aquat. Microb. Ecol., 68, 107-116.
Keywords: Triparma laevis; Parmales; Vertical distribution; Growth characteristics; Oyashio region
Strain(s): 2565 
DOI: 10.3354/ame01606
Ichinomiya, M., Yoshikawa, S., Kmiya, M., Ohki, K., Takaichi, S., Kuwata, A. 2011 Isolation and characterization of Parmales (Heterokonta/Heterokontophyta/Stramenopiles) from the Oyashio region, Western North Pacific. J. Phycol., 47, 144-151.
Keywords: Bolidophyceae; diatoms; heterokonts; Parmales; PDMPO; phylogeny; stramenopiles; Triparma laevis
Strain(s): 25652682 
PubMed: 27021720
DOI: 10.1111/j.1529-8817.2010.00926.x
Ichinose, T. M. & Iwane, A. H. 2018 Cytological analyses by advanced electron microscopy. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 129-151.
Keywords: FIB-SEM; SBF-SEM; EM-tomography; EM (electron microscopy); Block-face imaging; Cryo-TEM; Cryo-TEM tomography; Cyanidioschyzon merolae; Physical fixation
Strain(s): 1804 
DOI: 10.1007/978-981-10-6101-1_9
Iehara, M. 1990 Kinetic analysis of the growth of Chlorella vulgaris. Biotech. Bioeng., 36, 198-206.
Strain(s): 227 
PubMed: 18595068
DOI: 10.1002/bit.260360212
Iida, H., Nishii, I., Inouye, I. 2011 Embryogenesis and cell positioning in Platydorina caudata (Volvocaceae, Chlorophyta). Phycologia, 50, 530-540.
Keywords: Volvocaceae; inversion; intercalation; cytoplasmic bridge; stalk; colony formation
Strain(s): 728729 
DOI: 10.2216/10-80.1
Iida, H., Ota, S., Inouye, I. 2013 Cleavage, incomplete inversion, and cytoplasmic bridges in Gonium pectorale (Volvocales, Chlorophyta). J. Plant Res., 126, 699-707.
Keywords: Cytoplasmic bridge; Gonium; Inversion; Multicellularity; Transmission electron microscopy; Volvocales
Strain(s): 645 
PubMed: 23455615
DOI: 10.1007/s10265-013-0553-7
Iida, K., Takishita, K., Ohshima, K., Inagaki, Y. 2007 Assessing the monophyly of chlorophyll-c containing plastids by multi-gene phylogenies under the unlinked model conditions. Mol. Phylogenet. Evol., 45(1), 227-238.
Keywords: chromist; chromalveolate; secondary endosymbiosis; model misspecification; separate model; concatenate model
Strain(s): 115548670716 
PubMed: 17591448
DOI: 10.1016/j.ympev.2007.05.003
Iino, M. & Hashimoto, H. 2003 Intermediate features of cyanelle division of Cyanophora paradoxa (Glaucocystophyta) between cyanobacterial and plastid division. J. Phycol., 39, 561-569.
Keywords: chloroplast division; cyanelle; Cyanophora paradoxa; endosymbiosis; Glaucocystophyta; peptidoglycan; plastid dividing-ring; plastid division; plastid envelope
Strain(s): 547 
DOI: 10.1046/j.1529-8817.2003.02132.x
Ikegami, S., Imai, I., Kato, J., Ohtake, H. 1995 Chemotaxis toward inorganic phosphate in the red tide alga Chattonella antiqua. J. Plankton Res., 17, 1587-1591.
Strain(s): 1 
DOI: 10.1093/plankt/17.7.1587
Ikehara, T., Kuniyoshi, K., Yamaguchi, H., Tanabe, Y., Sano, T., Yoshimoto, M., Oshiro, N., Nakashima, S., Yasumoto-Hirose, M. 2019 First report of Microcystis strains producing MC-FR and -WR toxins in Japan. Toxins, 11, 521 (article ID).
Keywords: Cyanobacteria; Microcystis; microcystins; environmental water; liquid chromatographymass spectrometry; protein phosphatase 2A inhibition assay
Strain(s): 43444345 
PubMed: 31505765
DOI: 10.3390/toxins11090521
Ikushima, T. 1975 Action of furylfuramide (AF-2) on chloroplasts of Euglena gracilis. Annu. Rep. Res. Reactor Inst. Kyoto Univ., 8, 83-85.
Strain(s): 48 
Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of aquatic humic substances on the growth of the cyanobacterium Microcystis aeruginosa. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 22, 555-560 (in Japanese with English summary).
Keywords: aquatic humic substances; Microcystis aeruginosa; iron limitation; siderophore; Lake Kasumigaura
Strain(s): 98 
Imai, A., Fukushima, T., Matsushige, K. 1999 Effects of iron limitation and aquatic humic substances on the growth of Microcystis aeruginosa. Can. J. Fish. Aquat. Sci., 56, 1929-1937.
Strain(s): 98 
DOI: 10.1139/f99-131
Imai, I., Fujimaru, D., Nishigaki, T. 2002 Co-culture of fish with macroalgae and associated bacteria: A possible mitigation strategy for noxious red tides in enclosed coastal sea. Fish. Sci., 68, 493-496.
Keywords: red tide; mitigation; algicidal bacteria; macroalgae; co-culture of fish and macroalgae
Strain(s): 1 
DOI: 10.2331/fishsci.68.sup1_493
Imai, I., Hatano, M., Naito, K. 2004 Development of a chemically defined artificial medium for marine red tide-causing raphidophycean flagellates. Plankton Biol. Ecol., 95, 95-102.
Keywords: Chattonella; Fibrocapsa; artificial media; molybdenum; iodine
Strain(s): 1 
Imai, I., Ishida, Y., Hata, Y. 1993 Killing of marine phytoplankton by a gliding bacterium Cytophaga sp., isolated from the coastal sea of Japan. Mar. Biol., 116, 527-532.
Strain(s): 1 
DOI: 10.1007/BF00355470
Imai, I., Ishida, Y., Sakaguchi, K., Hata, Y. 1995 Algicidal marine bacteria isolated from northern Hiroshima Bay, Japan. Fish. Sci., 61, 628-636.
Keywords: algicidal bacteria; red tide; Chattonella; Alteromonas
Strain(s): 1 
DOI: 10.2331/fishsci.61.628
Imai, I., Ishida, Y., Sawayama, S., Hata, Y. 1991 Isolation of a marine gliding bacterium that kills Chattonella antiqua (Raphidophyceae). Nippon Suisan Gakkaishi, 57, 1409.
Strain(s): 1 
Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Detection and enumeration of microorganisms that are lethal to harmful phytoplankton in coastal waters. Plankton Biol. Ecol., 45, 19-29.
Keywords: red tide; Chattonella; Heterosigma; killer bacteria; viruses
Strain(s): 1 
Imai, I., Kim, M. C., Nagasaki, K., Itakura, S., Ishida, Y. 1998 Relationships between dynamics of red tide-causing raphidophycean flagellates and algicidal micro-organisms in the coastal sea of Japan. Phycol. Res., 46, 139-146.
Keywords: algicidal bacteria; Chattonella; Heterosigma; Raphidophyceae; red tide; virus
Strain(s): 1 
DOI: 10.1111/j.1440-1835.1998.tb00106.x
Imai, I., Nakagiri, S., Nagai, K., Nagasaki, K., Itakura, S., Yamaguchi, M. 1998 Fluctuations of algicidal microorganisms against the harmful dinoflagellate Heterocapsa circularisquama in Ago Bay, Mie Prefecture, Japan. Bull. Nansei Natl. Fish. Res. Inst., 31, 53-61 (in Japanese with English summary).
Keywords: red tide; Heterocapsa circularisquama; algicidal bacteria; viruses; Ago Bay
Strain(s): 1 
Imaizumi, M., Sekimoto, H., Noguchi, T. 2007 Induction of sex pheromone secretion and observations of the secretory pathway in the Closterium peracerosum-strigosum-littorale complex. Plant Sci., 173, 206-212.
Keywords: Closterium peracerosum-strigosum-littorale; Immunoelectron microscopy; Protoplast release-inducing protein; Sex pheromone; Sexual reproduction; Zygote formation
Strain(s): 6768 
DOI: 10.1016/j.plantsci.2007.05.002
Imamura, N., Motoike, I., Noda, M., Adachi, K., Konno, A., Fukami, H. 2000 Argimicin A, a novel anti-cyanobacterial compound produced by an algae-lysing bacterium. J. Antibiotics, 53, 1317-1319.
Strain(s): 102298 
DOI: 10.7164/antibiotics.53.1317
Imamura, N., Motoike, I., Shimada, N., Nishikori, M., Morisaki, H., Fukami, H. 2001 An efficient screening approach for anti-Microcystis compounds based on knowledge of aquatic microbial ecosystem. J. Antibiotics, 54, 582-587.
Strain(s): 102228 
PubMed: 11560377
DOI: 10.7164/antibiotics.54.582
Imamura, S., Hanaoka, M., Tanaka, K. 2008 The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I. EMBO J., 27, 2317-2327.
Strain(s): 3377 
PubMed: 18668124
DOI: 10.1038/emboj.2008.151
Imamura, S., Kanesaki, Y., Ohnuma, M., Inouye, T., Sekine, Y., Fujiwara, T., Kuroiwa, T., Tanaka, K. 2009 R2R3-type MYB transcription factor, CmMYB1, is a central nitrogen assimilation regulator in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 106, 12548-12553.
Strain(s): 3377 
PubMed: 19592510
DOI: 10.1073/pnas.0902790106
Imamura, S., Nomura, Y., Takemura, T., Pancha, I., Taki, K., Toguchi, K., Tozawa, Y., Tanaka K. 2018 The checkpoint kinase TOR (target of rapamycin) regulates expression of a nuclear‐encoded chloroplast RelA‐SpoT homolog (RSH) and modulates chloroplast ribosomal RNA synthesis in a unicellular red alga. Plant J., 94, 327-339.
Keywords: RelA-SpoT homolog; ppGpp; red alga; ribosomal RNA; target of rapamycin
Strain(s): 3377 
PubMed: 29441718
DOI: 10.1111/tpj.13859
Imamura, S., Terashita, M., Ohnuma, M., Maruyama, S., Minoda, A., Weber, A. P. M., Inouye, T., Sekine, Y., Fujita, Y., Omata, T., Tanaka, K. 2010 Nitrate assimilatory genes and their transcriptional regulation in a unicellular red alga Cyanidioschyzon merolae: genetic evidence for nitrite reduction by a sulfite reductase-like enzyme. Plant Cell Physiol., 51, 707-717.
Keywords: Cyanidioschyzon merolae; Nitrate assimilation; Nitrite reductase; Nitrogen regulation; Red alga; Sulfite reductase
Strain(s): 3377 
PubMed: 20375110
DOI: 10.1093/pcp/pcq043
Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017 Application of MALDI Biotyper to cyanobacterial profiling. Rapid Commun. Mass Spectrom., 31, 325-332.
Strain(s): 738910210310711229861180880983584398910251043105810711099164216521672 
PubMed: 27862451
DOI: 10.1002/rcm.7793
Imase, M., Ohko, Y., Takeuchi, M., Hanada, S. 2013 Estimating the viability of Chlorella exposed to oxidative stresses based around photocatalysis. Int. Biodeterior. Biodegrad., 78, 1-6.
Keywords: Autofluorescence; Cell staining; Chlorella sorokiniana; Oxidative stress: TiO2 photocatalysis; Viability assay
Strain(s): 2169 
DOI: 10.1016/j.ibiod.2012.12.006
Imoto, Y., Kuroiwa, H., Yoshida, Y., Ohnuma, M., Fujiwara, T., Yoshida, M., Nishida, K., Yagisawa, F., Hirooka, S., Miyagishima, S.Y., Misumi, O., Kawano, S., Kuroiwa, T. 2013 Single-membrane-bound peroxisome division revealed by isolation of dynamin-based machinery. Proc. Nati. Acad. Sci. U. S. A., 110, 9583-9588.
Strain(s): 3377 
PubMed: 23696667
DOI: 10.1073/pnas.1303483110
Inaba, K., Hiraka, K., Kumagai, K., Hokura, A. 2023 Tellurium nanorods produced by the reduction of tellurate and tellurite inside unicellular algae. Chem. Lett., 52, 284-288.
Keywords: Tellurium nanorod; Unicellular alga; X-ray analyses
Strain(s): 2713 
DOI: 10.1246/cl.230054
Inaba, N., Trainer, V., Nagai, S., Kojima, S., Sakami, T., Takagi, S., Imai, I. 2019 Dynamics of seagrass bed microbial communities in artificial Chattonella blooms: A laboratory microcosm study. Harmful Algae, 84, 139-150.
Keywords: Microcosm; Study; Chattonella; Harmful algal blooms (HAB); Seagrass; HAB ; prevention
Strain(s): 1 
PubMed: 31128798
DOI: 10.1016/j.hal.2018.12.004
Inaba, N., Watanabe, T., Sakami, T., Nishi, H., Tahara, Y., Imai, I. 2014 Temporal and spatial distribution of algicidal and growth-inhibiting bacteria in the coastal sea of southwest Japan. J. Plankton Res., 36, 388-397.
Keywords: algicidal bacteria; growth-inhibiting bacteria; particle-associated bacteria; free-living bacteria; harmful algal blooms
Strain(s): 1 
DOI: 10.1093/plankt/fbt119
Inada, Y. 1958 Stimulatory and inhibitory effect of light on the nitrate assimilation by Chlorella. J. Gen. Appl. Microbiol., 4, 153-162.
Strain(s): 2170 
DOI: 10.2323/jgam.4.153
Inagaki, Y., Ehara, M., Watanabe, K. I., Hayashi-Ishimaru, Y., Ohama, T. 1998 Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria. J. Mol. Evol., 47, 378-384.
Keywords: COXI phylogenetic tree; UGA codon; deviant genetic code; directional codon reassignment
Strain(s): 12227274 
PubMed: 9767683
DOI: 10.1007/PL00006395
Inagaki, Y., Hayashi-Ishimaru, Y., Ehara, M., Igarashi, I., Ohama, T. 1997 Algae or protozoa: phylogenetic position of euglenophytes and dinoflagellates as inferred from mitochondrial sequences. J. Mol. Evol., 45, 295-300.
Keywords: mitochondrial COXI gene; Dinoflagellata; Apicomplexa; Kinetoplastida; Euglenophyta; endosymbiosis; genetic code; malarian circle
Strain(s): 12381 
DOI: 10.1007/PL00006233
Inamori, Y., Ohno, Y., Kaya, K., Watanabe, M. M., Sudo, R. 1990 Studies on the removal and decomposition of Microcystis viridis toxic substance in the bio-film reactor. Jpn. J. Water Poll. Res., 13, 525-530 (in Japanese with English summary).
Keywords: Microcystis viridis; toxic substance cyanoviridin; bio-film reactor; hydraulic retention time
Strain(s): 102 
Inamura, E., Katayama, T., Taguchi, S. 2017 Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans. Plankton Benthos Res., 12, 15-24.
Keywords: mycosporine-glycine; palythene; palythine; porphyra-334; shinorine
Strain(s): 218 
DOI: 10.3800/pbr.12.15
Inoue, Y., Hata, T., Kawai, S., Okamura,H., Nishida, T. 2010 Elimination and detoxification of triclosan by manganese peroxidase from white rot fungus. J. Hazard. Mater., 180, 764-767.
Keywords: Triclosan; Bacterial growth inhibition; Algal growth inhibition; Manganese peroxidase; Ligninolytic enzymes; White rot fungi
Strain(s): 35 
PubMed: 20434837
DOI: 10.1016/j.jhazmat.2010.04.024
Inoue-Sakamoto, K., Nazifi, E., Tsuji, C., Asano, T., Nishiuchi, T., Matsugo, S., Ishihara, K., Kanesaki, Y., Yoshikawa, H., Sakamoto, T. 2018 Characterization of mycosporine-like amino acids in the cyanobacterium Nostoc verrucosum. J. Gen. Appl. Microbiol., 64, 203-211.
Keywords: antioxidant; environmental adaptation; mycosporine-like amino acid (MAA); mys genes
Strain(s): 25382539 
PubMed: 29709901
DOI: 10.2323/jgam.2017.12.003
Inoue-Sakamoto, K., Tanji, Y., Yamaba, M., Natsume, T., Masaura, T., Asano, T., Nishiuchi, T., Sakamoto, T. 2018 Characterization of extracellular matrix components from the desiccation-tolerant cyanobacterium Nostoc commune. J. Gen. Appl. Microbiol., 64, 15-25.
Keywords: anhydrobiosis; desiccation tolerance; extracellular polysaccharide (EPS); superoxide dismutase (SOD); water stress protein (WspA)
Strain(s): 21082538398939903991 
PubMed: 29225284
DOI: 10.2323/jgam.2017.03.001
Ioki, M., Ohkoshi, M., Nakajima, N., Nakahira-Yanaka, Y., Watanabe, M. M. 2012 Isolation of herbicide-resistant mutants of Botryococcus braunii. Bioresour. Technol., 109, 300-303.
Keywords: Botryococcus braunii; Paraquat; Methyl viologen; Basta; Glufosinate
Strain(s): 351192272302235 
PubMed: 21906932
DOI: 10.1016/j.biortech.2011.07.101
Irisarri, I., Darienko, T., Pröschold, T., Fürst-Jansen, J. M. R., Jamy, M., de Vries, J. 2021 Unexpected cryptic species among streptophyte algae most distant to land plants. Proc. R. Soc. B-Biol. Sci., 288, 20212168 (article ID).
Keywords: plant terrestrialization; plant evolution; streptophytes; green algae; phylogenomics; phycology
Strain(s): 160 
PubMed: 34814752
DOI: 10.1098/rspb.2021.2168
Irshad, M., Myint, A. A., Hong, M. E., Kim, J., Sim, S. J. 2019 One-pot, simultaneous cell wall disruption and complete extraction of astaxanthin from Haematococcus pluvialis at room temperature. ACS Sustain. Chem. Eng., 7, 13898-13910.
Keywords: Haematococcus pluvialis; One-pot method; Cell wall disruption; Extraction; Astaxanthin; Antioxidant activity; GRAS solvent
Strain(s): 144 
DOI: 10.1021/acssuschemeng.9b02089
Isaji, Y., Yoshikawa, C., Ogawa, N. O., Matsumoto, K., Makabe, A., Toyoda, S., Ishikawa, N. F., Ogawa, H., Saito, H., Honda, M. C., Ohkouchi, N. 2022 Nitrogen sources for phytoplankton in the Eastern Indian Ocean determined from δ15N of chlorophyll a and divinylchlorophyll a. Geochem. Geophys. Geosyst., 23, e2021GC010057 (article ID).
Strain(s): 208628852887 
DOI: 10.1029/2021GC010057
Isaka, N., Kawai-Toyooka, H., Matsuzaki, R., Nakada, T., Nozaki, H. 2012 Description of two new monoecious species of Volvox sect. Volvox (Volvocaceae, Chlorophyceae), based on comparative morphology and molecular phylogeny of cultured material. J. Phycol., 48, 759-767.
Keywords: Chlorophyceae; cultures; molecular phylogeny; morphology; taxonomy; Volvocaceae; Volvox ferrisii sp. nov.; Volvox kirkiorum sp. nov.; Volvox sect. Volvox
Strain(s): 54327362737273827392740 
PubMed: 27011093
DOI: 10.1111/j.1529-8817.2012.01142.x
Iseki, M., Matsunaga, S., Murakami, A., Ohno, K., Shiga, K., Yoshida, K., Sugai, M., Takahashi, T., Hori, T., Watanabe, M. 2002 A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis. Nature, 415, 1047-1051.
Strain(s): 48 
PubMed: 11875575
DOI: 10.1038/4151047a
Ishibashi, Y., Ichiyanagi, J., Gotoh, M., Konno, H. 1993 Culture conditions and characteristics of offensive odor-producing substance in the genus Uroglena [Uroglena zoku no baiyôjôken to syûkibusshitsu tokusei]. In Proceedings of 27th Annual Meeting of Japan Society on Water Environment [Dai 27kai Nippon Mizukankyô-Gakkai Nenkaikôensyû], pp. 282-283 (in Japanese with English title).
Strain(s): 395 
Ishibashi, Y., Oikawa, E., Honda, H., Adachi, T., Nakatochi, M. 2007 Analyses of growth factors of taste and odor producing algae by a fuzzy neural network. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 44, 255-263 (in Japanese with English summary).
Keywords: musty odor; Phormidium tenue; Uroglena americana; fuzzy neural network; wind speed
Strain(s): 512 
DOI: 10.11532/proes1992.44.255
Ishida, K. & Murakami, M. 2000 Kasumigamide, an antialgal peptide from the cyanobacterium Microcystis aeruginosa. J. Org. Chem., 65, 5898-5900.
Strain(s): 87439 
PubMed: 10987919
DOI: 10.1021/jo991918f
Ishida, K., Matsuda, H., Murakami, M. 1998 Four new microginins, linear peptides from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 54, 13475-13484.
Strain(s): 99299 
DOI: 10.1016/S0040-4020(98)00826-6
Ishida, K., Matsuda, H., Murakami, M. 1998 Micropeptins 88-A to 88-F, chymotrypsin inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 54, 5545-5556.
Strain(s): 88 
DOI: 10.1016/S0040-4020(98)00242-7
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 Kawaguchipeptin A, a novel cyclic undecapeptide from cyanobacterium Microcystis aeruginosa (NIES-88). Tetrahedron, 52, 9025-9030.
Strain(s): 88 
DOI: 10.1016/0040-4020(96)00452-8
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1996 The absolute stereochemistry of micropeptin 90. Tetrahedron Letters, 37, 9225-9226.
Strain(s): 90 
DOI: 10.1016/S0040-4039(96)02189-2
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Kawaguchipeptin B, an antibacterial cyclic undecapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 724-726.
Strain(s): 88 
DOI: 10.1021/np970146k
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Microginins 299-A and -B, leucine aminopeptidase inhibitors from the cyanobacterium Microcystis aeruginosa (NIES-299). Tetrahedron, 53, 10281-10288.
Strain(s): 299 
DOI: 10.1016/S0040-4020(97)00684-4
Ishida, K., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Micropeptins 478-A and -B, plasmin inhibitors from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 60, 184-187.
Strain(s): 478 
DOI: 10.1021/np9606815
Ishida, K., Murakami, M., Matsuda, H., Yamaguchi, K. 1995 Micropeptin 90, a plasmin and trypsin inhibitor from the blue-green alga Microcystis aeruginosa (NIES-90). Tetrahedron Letters, 36, 3535-3538.
Strain(s): 90 
DOI: 10.1016/0040-4039(95)00547-P
Ishida, K., Nakagawa, H., Murakami, M. 2000 Microcyclamide, a cytotoxic cyclic hexapeptide from the cyanobacterium Microcystis aeruginosa. J. Nat. Prod., 63, 1315-1317.
Strain(s): 298 
PubMed: 11000050
DOI: 10.1021/np000159p
Ishida, K., Okita, Y., Matsuda, H., Okino, T., Murakami, M. 1999 Aeruginosins, protease inhibitors from the cyanobacterium Microcystis aeruginosa. Tetrahedron, 55, 10971-10988.
Strain(s): 8998298 
DOI: 10.1016/S0040-4020(99)00621-3
Ishida, K., Welker, M., Christiansen, G., Cadel-Six, S., Bouchier, C., Dittmann, E., Hertweck, C., de Marsac, N. T. 2009 Plasticity and evolution of aeruginosin biosynthesis in Cyanobacteria. Appl. Environ. Microbiol., 75, 2017-2026.
Strain(s): 98843 
PubMed: 19201978
DOI: 10.1128/AEM.02258-08
Ishida, T., Watanabe, M. M., Sugiyama, J., Yokota, A. 2001 Evidence for polyphyletic origin of the members of the orders of Oscillatoriales and Pleurocapsales as determined by 16S rDNA analysis. FEMS Microbiol. Lett., 201, 79-82.
Keywords: cyanobacterium; Pleurocapsales; 16S rDNA; phylogeny
Strain(s): 272085102116211821192128 
PubMed: 11445171
DOI: 10.1111/j.1574-6968.2001.tb10736.x
Ishida, T., Yokota, A., Sugiyama, J. 1997 Phylogenetic relationships of filamentous cyanobacterial taxa inferred from 16S rRNA sequence divergence. J. Gen. Appl. Microbiol., 43, 237-241.
Keywords: filamentous cyanobacteria; molecular phylogeny; Oscillatoriales; 16S rRNA
Strain(s): 272085102116211821192128 
PubMed: 12501325
DOI: 10.2323/jgam.43.237
Ishida, Y. & Kimura, B. 1986 Photosynthetic phagotrophy of Chrysophyceae: evolutionary aspects. Microbiological Sciences, 3, 132-135.
Strain(s): 395 
PubMed: 3153154
Ishida, Y., Kimura, B., Nakahara, H., Kadota, H. 1982 Analysis of major nutrient effecting Uroglena americana bloom in the Northern Lake Biwa, by use of algal bioassay. Bull. Jpn. Soc. Sci. Fish., 48, 1281-1287.
Strain(s): 395 
DOI: 10.2331/suisan.48.1281
Ishikawa, I. S. 1990 Characteristic structures of Spirulina trichome involved in gliding movement. Plant Morphol., 2, 7-14.
Keywords: gliding movement; Spirulina; thylakoid; trichome; motive force
Strain(s): 27 
DOI: 10.5685/plmorphol.2.7
Ishikawa, M., Takahashi, F., Nozaki, H., Nagasato, C., Motomura, T., Kataoka, H. 2009 Distribution and phylogeny of the blue light receptors aureochromes in eukaryotes. Planta, 230, 543-552.
Keywords: aureochrome (AUREO); BL receptor; bZIP; LOV; stramenopiles
Strain(s): 12801017 
PubMed: 19544070
DOI: 10.1007/s00425-009-0967-6
Ishikawa, N. K., Takahashi, K., Sakakibara, T., Nomura, S., Ito, A. 2022 Degradation of sulfamonomethoxine in solution using pulsed plasma discharge - identification of by-products and toxicity of treated solution to green algae. Water Sci. Technol., 86, 2430–2440.
Keywords: acute toxic test; LC-MS/MS; Raphidocelis subcapitata; radical
Strain(s): 35 
PubMed: 36378190
DOI: 10.2166/wst.2022.341
Ishimitsu, M. & Chihara, M. 1984 Four species of Cryptomonas (Class Cryptophyceae) in Japan. J. Jpn. Bot., 59, 161-169.
Strain(s): 274275276277278279280281282344345346347348 
Ishinishi, R., Matsuura, H., Tanaka, S., Nozawa, S., Tanada, K., Kawashita, N., Fujiyama, K., Miyasaka, H., Hirata, K. 2018 Isolation and characterization of a stress-responsive gene encoding a CHRD domain-containing protein from a halotolerant green alga. Gene, 640, 14-20.
Keywords: Stress response; Chlamydomonas reinhardtii; Secretory protein; Recombinant protein; Unknown function
Strain(s): 2235 
PubMed: 29017964
DOI: 10.1016/j.gene.2017.10.012
Ishitani, Y., Ciacci, C., Ujiié, Y., Tame, A., Tiboni, M., Tanifuji, G., Inagaki, Y., Frontalini, F. 2023 Fascinating strategies of marine benthic organisms to cope with emerging pollutant: Titanium dioxide nanoparticles. Environ. Pollut., 330, 121538 (article ID).
Keywords: Marine pollution; Foraminifera; Mucus; Reactive oxygen species; Transcriptome
Strain(s): 2257 
PubMed: 37011780
DOI: 10.1016/j.envpol.2023.121538
Ishitsuka, M. O., Kusumi, T., Kakisawa, H., Kaya, K., Watanabe, M. M. 1990 Microviridin: a novel tricyclic depsipeptide from the toxic cyanobacterium Microcystis viridis. J. Am. Chem. Soc., 112, 8180-8182.
Strain(s): 102 
Isono, T. & Katoh, T. 1982 Cylindrical phycobilisomes from a blue-green alga, Anabaena variabilis. Plant Cell Physiol., 23, 1347-1355.
Keywords: blue-green alga (Anabaena variabilis); electron micrograph; cylindrical phycobilisomes; phycobilisomes; protein assembly
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076481
Isono, T. & Katoh, T. 1983 Subparticles of Anabaena phycobilisomes. 1. Reconstruction of allophycocyanin cores and entire phycobilisomes. Plant Cell Physiol., 24, 357-368.
Keywords: allophycocyanin (assembly); blue-green algae (Anabaena variabilis); in vitro association (phycobilisome); phycobilisome core; phycobilisome; protein assembly
Strain(s): 2093 
Isono, T., Yamashita, K., Momose, D., Kobayashi, H., Kitamura, M., Nishiyama, Y., Hosoya, T., Kanda, H., Kudo, A., Okada, N., Yagi, T., Nakata, K., Mineki, S., Tokunaga, E. 2015 Scan-free absorbance spectral imaging A(x, y, λ) of single live algal cells for quantifying absorbance of cell suspensions. PLoS One, 10, e0128002 (article ID).
Strain(s): 2238 
PubMed: 26061268
DOI: 10.1371/journal.pone.0128002
Isozaki, A., Nakagawa, Y., Loo, M. H., Shibata, Y., Tanaka, N., Setyaningrum, D. L., Park, J.-W., Shirasaki, Y., Mikami, H., Huang, D., Tsoi, H., Riche, C. T., Ota, T., Miwa, H., Kanda, Y., Ito, T., Yamada, K., Iwata, O., Suzuki, K., Ohnuki, S., Ohya, Y., Kato, Y., Hasunuma, T., Matsusaka, S., Yamagishi, M., Yazawa, M., Uemura, S., Nagasawa, K., ,Watarai, H. Di Carlo, D., Goda, K. 2020 Sequentially addressable dielectrophoretic array for high-throughput sorting of large-volume biological compartments. Sci. Adv., 6, eaba6712 (article ID).
Strain(s): 484141 
PubMed: 32524002
DOI: 10.1126/sciadv.aba6712
Issarapayup, K., Powtongsook, S., Pavasant, P. 2009 Flat panel airlift photobioreactors for cultivation of vegetative cells of microalga Haematococcus pluvialis. J. Biotechnol., 142, 227-232.
Keywords: airlift photobioreactor; vegetative cells; astaxanthin; bioprocess design; microalga
Strain(s): 144 
PubMed: 19422861
DOI: 10.1016/j.jbiotec.2009.04.014
Issarapayup, K., Powtongsook, S., Pavasant, P. 2011 Economical review of Haematococcus pluvialis culture in flat-panel airlift photobioreactors. Aquac. Eng., 44, 65-71.
Keywords: Airlift photobioreactor; Microalga; Economical analysis; Bioprocess design
Strain(s): 144 
DOI: 10.1016/j.aquaeng.2011.03.002
Ito, T., Okabe, K., Mori, M. 2018 Growth reduction of Microcystis aeruginosa by clay ball elution solution. Appl. Clay Sci., 162, 223-229.
Keywords: Cyanobacterial bloom; Clay ball; Microcystis aeruginosa; Silicate; Diatom; Concrete
Strain(s): 711068 
DOI: 10.1016/j.clay.2018.06.018
Itoh, Y., Murakami, H., Ikeda, R. 1993 Studies on the growth limiting nutrients of red tide plankton in the tidal area [Kanchô-iki ni okeru akashio gen'in sôrui no zôshoku yokusei inshi no suitei]. Proc. Coast. Engineering, JSCE [Kaigan Kôgaku Ronbun-shû], 40, 1001-1005 (in Japanese without English title).
Strain(s): 323 
Itou, Y., Ishida, K., Shin, H. J., Murakami, M. 1999 Oscillapeptins A to F, serine protease inhibitors from the three strains of Oscillatoria agardhii. Tetrahedron, 55, 6871-6882.
Strain(s): 204205596 
DOI: 10.1016/S0040-4020(99)00341-5
Itou, Y., Okada, S., Murakami, M. 2001 Two structural isomeric siderophores from the freshwater cyanobacterium Anabaena cylindrica (NIES-19). Tetrahedron, 57, 9093-9099.
Keywords: iron; sidenophore; cyanobacteria; Anabaena cylindrica; CAS
Strain(s): 19 
DOI: 10.1016/S0040-4020(01)00934-6
Itou, Y., Suzuki, S., Ishida, K., Murakami, M. 1999 Anabaenopeptins G and H, potent carboxypeptidase A inhibitors from the cyanobacterium Oscillatoria agardhii (NIES-595). Bioorg. Med. Chem. Lett., 9, 1243-1246.
Strain(s): 595 
PubMed: 10340607
DOI: 10.1016/S0960-894X(99)00191-2
Iwahori, K., Miyata, N., Umeda, Y., Aoyama, K., Shimoi, K., Kinae, N. 1999 Applicability of environmental microorganisms to alkaline single cell gel electrophoresis (comet) assay. Jpn. J. Water Treat. Biol., 35, 261-270 (in Japanese with English summary).
Keywords: comet assay; DNA damage; environmental microorganisms; Euglena gracilis; cell lysis; unwinding; electrophoresis; SDS; γ-irradiation
Strain(s): 49122403 
Iwahori, K., Miyata, N., Yamamoto, Y., Sone, D., Aoyama, K. 2004 Normalization of DNA damage indices in comet assay for comparing with various mutagenicity tests. Jpn. J. Water Treat. Biol., 40, 63-70.
Keywords: comet assay; tail moment; normalization; mutagenicity test
Strain(s): 49 
DOI: 10.2521/jswtb.40.63
Iwai, M., Hori, K., Sasaki-Sekimoto, Y., Shimojima, M., Ohta, H. 2015 Manipulation of oil synthesis in Nannochloropsis strain NIES-2145 with a phosphorus starvation–inducible promoter from Chlamydomonas reinhardtii. Front. Microbiol. 6, 912 (article ID).
Keywords: algae; Nannochloropsis; phosphorus starvation; inducible promoter; triacylglycerol
Strain(s): 2145 
PubMed: 26441858
DOI: 10.3389/fmicb.2015.00912
Iwai, S., Fujita, K., Takanishi, Y., Fukushi, K. 2019 Photosynthetic endosymbionts benefit from host’s phagotrophy, including predation on potential competitors. Curr. Biol., 29, 3114-3119.
Strain(s): 227 
PubMed: 31495588
DOI: 10.1016/j.cub.2019.07.074
Iwami, N., Inamori, Y., Sugiura, N., Matsumura, M. 1996 Degradation characteris-tics of toxic Microcystis viridis by Mastigophora, Monas guttula using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 19, 140-146.
Keywords: degradation; Microcystis; microflagellate; toxic substance; aquatic large scale microcosm
Strain(s): 102 
Iwamoto, K. & Ikawa, T. 2000 A novel glycolate oxidase requiring flavin mononucleotide as the cofactor in the prasinophycean alga Mesostigma viride. Plant Cell Physiol., 41, 988-991.
Keywords: flavin mononucleotide (FMN)-requiring enzyme; glycolate metabolism; glycolate oxidase; glycolate-oxidizing enzyme; Mesostigma viride; Prasinophyceae
Strain(s): 296 
PubMed: 11038060
DOI: 10.1093/pcp/pcd020
Iwamoto, K. & Shiraiwa, Y. 2003 Characterization of NADH nitrate reductase from the coccolithophorid Emiliania huxleyi (Lohman) Hay & Mohler (Haptophyceae). Mar. Biotechnol., 5, 20-26.
Keywords: coccolithophorid; Emiliania huxleyi; enzyme purification; nitrate reductase; nitrate utilization
Strain(s): 837 
PubMed: 12925915
DOI: 10.1007/s10126-002-0051-8
Iwamoto, K. & Shiraiwa, Y. 2012 Characterization of intracellular iodine accumulation by iodine-tolerant microalgae. Procedia Environ. Sco., 15, 34-42.
Keywords: growth stimulation; growth inhibition; haptophyte; iodine; iodine accumulation
Strain(s): 377837838 
DOI: 10.1016/j.proenv.2012.05.007
Iwamoto, K. & Shiraiwa, Y. 2017 Accumulation of cesium by aquatic plants and algae. In Impact of Cesium on Plants and the Environment, Eds. by Gupta, D. & Walther, C., Springer International Publishing, pp. 171-185.
Keywords: Eustigmatophycean alga; Vacuoliviride crystalliferum; Fukushima 1st Nuclear Power Plant Accident; High cesium-accumulating microalgae; Phytoremediation; Radioactive cesium
Strain(s): 329145821312352 
DOI: 10.1007/978-3-319-41525-3_10
Iwamura, T. 1960 Distribution of nucleic acids among subcellular fractions of Chlorella. Biochim. Biophys. Acta, 42, 161-163.
Strain(s): 2170 
PubMed: 13718345
DOI: 10.1016/0006-3002(60)90766-6
Iwamura, T. 1962 Cellular distributions and properties of nucleic acid species in Chlorella. In Symposium in Institute of Applied Microbiology, University of Tokyo, Vol. III, pp. 259-278 (in Japanese).
Strain(s): 2170 
Iwamura, T. 1962 Characterization of the turnover of chloroplast deoxyribonucleic acid in Chlorella. Biochim. Biophys. Acta, 61, 472-474.
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DOI: 10.1016/0926-6550(62)90155-X
Iwamura, T. 1965 Change of nucleic acid content in Chlorella cells during the course of their life-cycle. J. Biochem., 42, 575-589.
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Iwamura, T. 1966 Nucleic acid in chloroplasts and metabolic DNA. Progr. Nucl. Acid Res. Mol. Biol., 5, 133-155.
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DOI: 10.1016/S0079-6603(08)60233-0
Iwamura, T. 1970 Phylogenetic aspects of algal biochemistry (1) DNA species in algae. Ann. NY Acad. Sci., 175, 488-510.
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Iwamura, T. 1987 The feasibility of Chlorella as the exchanger of CO2 for O2 and the food resources in the space station. In Biological Sciences in Space 1986, Eds. by Watanabe, S. et al., MYU Research, Tokyo, pp. 257-264.
Strain(s): 2170 
Iwamura, T. & Aoshima, J. 1984 Multiplication of chloroplast DNA. Protein, Nucleic Acid and Enzyme, 29, 191-201 (in Japanese).
Strain(s): 2170 
Iwamura, T. & Kuwashima, S. 1964 Formation of adenosine 5-triphosphate from polyphosphate by a cell-free extract from Chlorella. J. Gen. Appl. Microbiol., 10, 83-86.
Strain(s): 2170 
DOI: 10.2323/jgam.10.83
Iwamura, T. & Kuwashima, S. 1964 Further observations on the deoxyribonucleic acid species in Chlorella showing light-dependent metabolic turnover. Biochim. Biophys. Acta, 82, 678-679.
Strain(s): 2170 
PubMed: 14156741
Iwamura, T. & Kuwashima, S. 1969 Two DNA species in chloroplasts of Chlorella. Biochim. Biophys. Acta, 174, 330-339.
Strain(s): 2170 
PubMed: 5766301
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Iwamura, T. & Muto, N. 1964 Incorporation of 5-bromouracil into the two kinds of DNA in Chlorella. Plant Cell Physiol., 5, 359-360.
Strain(s): 2170 
Iwamura, T. & Myers, J. 1959 Changes in the content and distribution of the nucleic acid bases in Chlorella during the life cycle. Arch. Biochem. Biophys., 84, 267-277.
Strain(s): 2170 
PubMed: 14406172
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Iwamura, T., Hase, E., Moriyama, Y., Tamiya, H. 1955 Life cycle of the green alga Chlorella with special reference to the protein and nucleic acids contents of cells in successive formative stages. In A.I. Virtanen homage volume, Biochemistry of Nitrogen, Helsinki, pp. 89-103.
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Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. I. Chromatographic analysis of the acid-soluble nucleotides. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 577-586.
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Iwamura, T., Kanazawa, T., Kanazawa, K. 1963 Nucleotide metabolism in Chlorella. II. Quantitative changes in component-nucleotides of the acid-soluble fraction of algal cells during their life-cycle. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 587-596.
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Iwamura, T., Katoh, K., Nishimura, T. 1982 Semi-conservative replication of chloroplast DNA in synchronized Chlorella. Cell Struct. Funct., 7, 71-86.
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Iwamura, T., Kunieda, R. Kuwashima, S., Nishimura, T. 1988 Inhibition of growth of Chlorella by various drugs. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 23, 1-11.
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Iwamura, T., Nagai, H., Ichimura, S. 1970 Improved methods for determining contents of chlorophyll, protein, ribonucleic acid, and deoxyribonucleic acid in planktonic populations. Int. Revue Ges. Hydrobiol., 55, 131-147.
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Iwamura, T., Takeda, Y., Nishimura, T. 1990 A c-myc like DNA fragment in Chlorella. J. Nat. Sci. Nagoya Economics Univ., Ichimura Gakuen Junior Coll., 24, 23-40 (in Japanese).
Strain(s): 2170 
Iwasaka, M., Mizukawa, Y. 2014 Magneto-optical properties of biogenic photonic crystals in algae. J. Appl. Phys., 115, 17B501 (article ID).
Strain(s): 13041313 
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Iwasaka, M., Mizukawa, Y. 2015 Effect of intense magnetic fields on the convection of biogenic guanine crystals in aqueous solution. J. Appl. Phys., 117, 17E127 (article ID).
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Iwasaki, H. & Sasada, K. 1969 Studies on the red tide dinoflagellates - II. On Heterosigma inlandica appeared in Gokasho Bay, Shima Peninsula. Bull. Jpn. Soc. Sci. Fish., 35, 943-947 (in Japanese with English summary).
Strain(s): 5 
Iwase, S., Abe, T. 2010 Identification and change in concentration of musty-odor compounds during frowth in blue-green algae. J. Sch. Marine Sci. Tech., Tokai Univ., 8, 27-33.
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Iwata, H., Haji, A., Hashimoto, K., Mitsuyanagi, K., Kanegae, Y. 1991 Methods for producing heat-unsoluble β-1,3-glucan [Kanetsu gyôkosei β-1,3-glucan no seizôhô]. In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Hei3-163102, 5 pp. (in Japanese).
Strain(s): 474849 
Iwataki, M., Botes, L., Sawaguchi, T., Sekiguchi, K., Fukuyo, Y. 2003 Cellular and body scale structure of Heterocapsa ovata sp. nov. and Heterocapsa orientalis sp. nov. (Peridiniales, Dinophyceae). Phycologia, 42, 629-637.
Strain(s): 472 
DOI: 10.2216/i0031-8884-42-6-629.1
Iwataki, M., Hansen, G., Sawaguchi, T., Hiroishi, S., Fukuyo, Y. 2004 Investigations of body scales in twelve Heterocapsa species (Peridiniales, Dinophyceae), including a new species H. pseudotriquetra sp. nov. Phycologia, 43, 394-403.
Strain(s): 420472473 
DOI: 10.2216/i0031-8884-43-4-394.1
Iwataki, M., Lum, W. M., Kuwata, K., Takahashi, K., Arima, D., Kuribayashi, T., Kosaka, Y., Hasegawa, N., Watanabe, T., Shikata, T., isada, T., Orlova, T. Y., Sakamoto, S. 2022 Morphological variation and phylogeny of Karenia selliformis (Gymnodiniales, Dinophyceae) in an intensive cold-water algal bloom in eastern Hokkaido, Japan. Harmful Algae, 114, 102204 (article ID).
Strain(s): 4541454245434544 
PubMed: 35550287
DOI: 10.1016/j.hal.2022.102204
Izumi, Y., Aikawa, S., Matsuda, F., Hasunuma, T., Kondo, A. 2013 Aqueous size-exclusion chromatographic method for the quantification of cyanobacterial native glycogen. J. Chromatogr. B, 930, 90-97.
Keywords: Size-exclusion chromatography; Native glycogen; Qantitative analysis; Polyhydroxy methacrylate; Microalgae; Arthrospira platensis
Strain(s): 39 
PubMed: 23727872
DOI: 10.1016/j.jchromb.2013.04.037
Jaiswal, T. P., Chakraborty, S., Singh, P., Mishra, A. K., Singh, S. S. 2021 Description of hot spring dwelling Mastigocladus ambikapurensis sp. nov., using a polyphasic approach. Plant Syst. Evol., 307, 33 (article ID).
Keywords: 16S rRNA gene; Cyanobacteria; ITS; Mastigocladus; Phylogeny
Strain(s): 5923754 
DOI: 10.1007/s00606-021-01755-2
Jang, M. H., Ha, K., Lucas, M. C., Joo, G. J., Takamura, N. 2004 Changes in microcystin production by Microcystis aeruginosa exposed to phytoplanktivorous and omnivorous fish. Aquat. Toxicol., 68, 51-59.
Keywords: Microcystis aeruginosa; microcystin; fish-induced defence; chemical cues; Hypophthalmichthys molitrix; Carassius gibelio langsdorfi
Strain(s): 448899 
PubMed: 15110469
DOI: 10.1016/j.aquatox.2004.02.002
Jang, M.-H., Ha, K., Jung, J.-M., Lee, Y.-J., Takamura, N. 2006 Increased microcystin production of Microcystis aeruginosa by indirect exposure of nontoxic cyanobacteria: potential role in the development Microcystis bloom. Bull. Environ. Contam. Toxicol., 76, 957-962.
Strain(s): 7488204 
Jang, M.-H., Ha, K., Takamura, N. 2007 Reciprocal allelopathic responses between toxic cyanobacteria (Microcystis aeruginosa) and duckweed (Lemna japonica). Toxicon, 49, 727-733.
Keywords: Microcystis aeruginosa Kützing; Lemna japonica Landolg; microcystin; allelochemicals; reciprocal allelopathic responses; growth; eutrophic waters
Strain(s): 103107 
PubMed: 17207510
DOI: 10.1016/j.toxicon.2006.11.017
Jang, M.-H., Ha, K., Takamura, N. 2008 Microcystin production by Microcystis aeruginosa exposed to different stages of herbivorous zooplankton. Toxicon, 51, 882-889.
Keywords: Microcystis aeruginosa; induced defense; different stages of zooplankton; infochemicals; intracellular microcystin; extracellular microcystin
Strain(s): 8898103107 
PubMed: 18243271
DOI: 10.1016/j.toxicon.2007.12.015
Jang, M.-H., Jung, J.-M., Takamura, N. 2007 Changes in microcystin production in cyanobacteria exposed to zooplankton at different population densities and infochemical concentrations. Limnol. Oceanogr., 52, 1454-1466.
Strain(s): 8898107 
DOI: 10.4319/lo.2007.52.4.1454
Jang, M-H., Ha, K., Joo, G-J., Takamura, N. 2003 Toxin production of cyanobacteria is increased by exposure to zooplankton. Freshw. Biol., 48, 1540-1550.
Keywords: info-chemicals; microcystin production; Microcystis aeruginosa; zooplankton; zooplankton culture media filtrate
Strain(s): 44878899 
DOI: 10.1046/j.1365-2427.2003.01107.x
Jang, S. H., Jeong, H. J., Yoo, Y. D. 2018 Gambierdiscus jejuensis sp. nov., an epiphytic dinoflagellate from the waters of Jeju Island, Korea, effect of temperature on the growth, and its global distribution. Harmful Algae, 80, 149-157.
Keywords: Benthic dinoflagellate; Ciguatera fish poisoning; Epiphytic dinoflagellate; Morphology; New species; Phylogeny
Strain(s): 4120 
PubMed: 30502807
DOI: 10.1016/j.hal.2018.11.007
Jangir, M. M., Chowdhury, S., Bhagavatula, V. 2021 Differential response of photosynthetic apparatus towards alkaline pH treatment in NIES-39 and PCC 7345 strains of Arthrospira platensis. Int. Microbiol., 24, 219-231.
Keywords: Arthrospira platensis; Thylakoid; PBsomes; Alkalinity; PSII; PSI; TEM
Strain(s): 39 
PubMed: 33438119
DOI: 10.1007/s10123-021-00160-6
Jangir, M. M., Vani, B., Chowdhury, S. 2019 Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and In-silico studies: an indication towards alkaline pH acclimation. Physiol. Mol. Biol. Plants 25, 1175–1183.
Keywords: Arthrospira platensis NIES-39; Na+/H+ antiporters; pH; Real-time PCR; CPA family
Strain(s): 39 
PubMed: 31564780
DOI: 10.1007/s12298-019-00687-z
Jannel, S., Caro, Y., Bermudes, M., Petit, T. 2023 Screening for microalgal biodiversity from Reunion Island in search of potential sources of natural astaxanthin. J. Appl. Phycol., 35, 2659–2673.
Keywords: Microalgal diversity; Wild strains; Astaxanthin; Haematococcus lacustris; Dysmorphococcus spp.; Reunion Island
Strain(s): 227 
DOI: 10.1007/s10811-023-03077-x
Janouskovec, J., Horák, A., Oborník, M., Lukes, J., Keeling, P. J. 2010 A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids. Proc. Natl. Acad. Sci. U. S. A., , 10949-10954.
Keywords: Apicomplexa: Chromera velia: CCMP3155: plastid evolution: chloroplast genome
Strain(s): 4391 
PubMed: 20534454
DOI: 10.1073/pnas.1003335107
Jeong, S.-Y. & Son, H.-J. 2021 Effects of mycosubtilin homolog algicides from a marine bacterium, Bacillus sp. SY-1, against the harmful algal bloom species Cochlodinium polykrikoides. J. Microbiol., 59, 389-400.
Keywords: algicide; Bacillus sp. SY-1; Cochlodinium polykrikoides; harmful algal bloom; mycosubtilin
Strain(s): 23227238298316446682 
PubMed: 33779952
DOI: 10.1007/s12275-021-1086-8
Jester, B. W. et al. 2022 Development of spirulina for the manufacture and oral delivery of protein therapeutics. Nat. Biotechnol., 40, 956–964.
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PubMed: 35314813
DOI: 10.1038/s41587-022-01249-7
Jiang, J., Lu, Y. 2019 Metabolite profiling of Breviolum minutum in response to acidification. Aquat. Toxicol., 213, 105215 (article ID).
Keywords: Breviolum minutum; Acidification; Metabolomics; LC-MS; Photophysiology; Acclimation
Strain(s): 3808 
PubMed: 31200330
DOI: 10.1016/j.aquatox.2019.05.017
Jiang, M. & Nakano, S. 2021 Application of image analysis for algal biomass quantification: a low‑cost and non‑destructive method based on HSI color space. J. Appl. Phycol., 33, 3709–3717.
Keywords: Algal biomass; Quantitative methods; Image analysis; HSI color space; Lambert–Beer law
Strain(s): 3332172 
DOI: 10.1007/s10811-021-02571-4
Jiang, M. & Nakano, S. 2022 The crucial influence of trophic status on the relative requirement of nitrogen to phosphorus for phytoplankton growth. Water Res., 222, 118868 (article ID).
Keywords: Nitrogen; Phosphorus; Trophic status; Phytoplankton; Nitrogen-to-phosphorus ratio; Limiting factor
Strain(s): 4420932172 
PubMed: 35870387
DOI: 10.1016/j.watres.2022.118868
Jiang, R., Qin, L., Feng, S., Huang, D., Wang, Z., Zhu, S. 2021 The joint effect of ammonium and pH on the growth of Chlorella vulgaris and ammonium removal in artificial liquid digestate. Bioresour. Technol., 325, 124690 (article ID).
Keywords: Chlorella vulgaris; Ammonium; pH; Free ammonia; Cell components; Extracellular organic matters
Strain(s): 227 
DOI: 1016/j.biortech.2021.124690
Jiang, X., Zhang, Y., Hutchins, D. A., Gao, K. 2022 Nitrogen-limitation exacerbates the impact of ultraviolet radiation on the coccolithophore Gephyrocapsa oceanica. J. Photochem. Photobiol. B-Biol., 226, 112368 (article ID).
Strain(s): 1318 
PubMed: 34864530
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Jiang, Y. & Liu, Y. 2020 Influence of increased nutrient supply on Microcystis aeruginosa at cellular and proteomic levels. Aquat. Microb. Ecol., 85, 47-58.
Keywords: Cyanobacteria; Nitrogen; Phosphorus; Protein-protein interaction network; Growth; Microcystis
Strain(s): 843 
DOI: 10.3354/ame01939
Jiang, Y., Chen, Y., Yang, S., Li, R. 2020 Phylogenetic relationships and genetic divergence of paralytic shellfish toxin- and cylindrospermopsin- producing Cylindrospermopsis and raphidiopsis. Harmful Algae, 93, 101792 (article ID).
Keywords: Biosynthesis; Cyanotoxin; Cylindrospermopsin; Gene cluster; Phylogeny; Saxitoxin
Strain(s): 9329911041 
PubMed: 32307073
DOI: 10.1016/j.hal.2020.101792
Jiang, Y., Liu, Y., Zhang, J. 2020 Antibiotic contaminants reduced the treatment efficiency of UV-C on Microcystis aeruginosa through hormesis. Environ. Pollut., 261, 114193 (article ID).
Keywords: Combined pollution; Ultraviolet irradiation; Cyanobacterial control; Microcystins; Proteomic resp
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PubMed: 32088440
DOI: 10.1016/j.envpol.2020.114193
Jin, J., Zhang, X., Kusui, T. 2018 Preliminary toxicity Assessment of combined Sewer overflows in Toyama, Japan. J. Water Environ. Technol., 16, 185-198.
Keywords: combined sewer overflows (CSOs); toxicity identification evaluation (TIE); toxicity test; heavy metals; aquatic organisms
Strain(s): 35 
DOI: 10.2965/jwet.17-041
Jin, P., Gao, K. 2016 Reduced resilience of a globally distributed coccolithophore to ocean acidification: Confirmed up to 2000 generations. Mar. Pollut. Bull., 103, 101-108.
Keywords: Ocean acidification; Coccolithophore; Evolution; Phenotypic plasticity; Fitness
Strain(s): 1318 
PubMed: 26746379
DOI: 10.1016/j.marpolbul.2015.12.039
Jin, P., Gao, K., Beardall, J. 2013 Evolutionary responses of a coccolithophorid Gephyrocapsa oceanica to ocean acidification. Evolution, 67, 1869-1878.
Keywords: CCM; CO2; coccolithophore; Gephyrocapsa; pH; selection
Strain(s): 1318 
PubMed: 23815645
DOI: 10.1111/evo.12112
Jin, P., Gao, K., Villafañe, V. E., Campbell, D. A., Helbling, E. W. 2013 Ocean acidification alters the photosynthetic responses of a coccolithophorid to fluctuating ultraviolet and visible radiation. Plant Physiol., 162, 2084-2094.
Strain(s): 1318 
PubMed: 23749851
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Jin, P., Liu, N., Gao, K. 2019 Physiological responses of a coccolithophore to multiple environmental drivers. Mar. Pollut. Bull., 146, 225-235.
Keywords: Coccolithophores; Global change; Ocean acidification; Multiple drivers; Synergistical
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PubMed: 31426151
DOI: 10.1016/j.marpolbul.2019.06.032
Jo, B.-H., Lee, C. S., Song, H.-R., Lee, H.-G., Oh, H.-M. 2014 Development of novel microsatellite markers for strain-specific identification of Chlorella vulgaris. J. Microbiol. Biotechnol., 24, 10.3354/ame01939
Keywords: Chlorella vulgaris; chloroplast; microsatellite; marker; polymorphism; sequence repeat
Strain(s): 64164268612692170 
PubMed: 24931503
DOI: 10.4014/jmb.1405.05047
Jo, S.-W., Do, J.-M., Kang, N.-S., Park, J. M., Lee, J. H., Kim, H. S., Hong, J. W., Yoon, H.-S. 2020 Isolation, identification, and biochemical characteristics of a cold-tolerant Chlorella vulgaris KNUA007 isolated from King George Island, Antarctica. J. Mar. Sci. Eng., 8, 935 (article ID).
Keywords: Chlorella vulgaris; cold-tolerant; PUFAs (polyunsaturated fatty acids); calorific value
Strain(s): 227 
DOI: 10.3390/jmse8110935
Johansen, JR., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J Jr., Štenclová, L., Hauer, T. 2017 Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria). PLoS One, 12, e0186393 (article ID).
Strain(s): 21304073 
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Johnson, L. M., Hoagland, K. D., Gretz, M. R. 1995 Effects of bromide and iodine on stalk secretion in the biofouling diatom Achnanthes longipes (Bacillariophyceae). J. Phycol., 31, 401-412.
Keywords: Achnanthes longipes; Bacillariophyceae; biofouling; bromide; diatom; EPS secretion; image analysis; inhibition of adhesion; iodine; Lotus-FITC; stalks
Strain(s): 330 
DOI: 10.1111/j.0022-3646.1995.00401.x
Jones, M. R., Pinto, E., Torres, M. A., Dörr, F., Mazur-Marzec, H., Szubert, K., Tartaglione, L., Dell'Aversano, C., Miles, C. O., Beach, D. G., McCarron, P., Sivonen, K., Fewer, D. P., Jokela, J., Janssen, E. M.-L. 2021 CyanoMetDB, a comprehensive public database of secondary metabolites from cyanobacteria. Water Res., 196, 117017 (article ID).
Strain(s): 90 
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Jong, L. W., Fujiwara, T., Hirooka, S., Miyagishima, S. 2021 Cell size for commitment to cell division and number of successive cell divisions in cyanidialean red algae. Protoplasma, 258, 1103–1118.
Keywords: Cell cycle; Cyanidiales; Cyanidioschyzon; Cyanidium; Galdieria; Multiple fission
Strain(s): 21373377 
PubMed: 33675395
DOI: 10.1007/s00709-021-01628-y
Joo, J. C., Ahn, C. H., Lee, S., Jang, D-G., Lee, W. H., Ryu, B. R. 2016 Algal growth potential of Microcystis aeruginosa from reclaimed water. Water Environ. Res., 88, 54-62.
Keywords: algal growth potential (AGP); Microcystis aeruginosa; reclaimed water; recreational water reuse; soluble reactive phosphorus; wastewater reclamation plant
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PubMed: 26803027
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Jouenne, F., Eikrem, W., Le Gall, F., Johnsen, G., Vaulot, D. 2011 Prasinoderma singularis sp. nov. (Prasinophyceae, Chlorophyta), a solitary coccoid prasinophyte from the South-East Pacific Ocean. Protist, 162, 70-84.
Keywords: binary fission; field emission scanning electron microscopy (FE-SEM); picoplankton; Prasinoderma; Prasinophyceae; taxonomy
Strain(s): 2582 
PubMed: 20674490
DOI: 10.1016/j.protis.2010.04.005
Joun, J., Sirohi, R., Sim, S. J. 2023 The effects of acetate and glucose on carbon fixation and carbon utilization in mixotrophy of Haematococcus pluvialis. Bioresour. Technol., 367, 128218 (article ID).
Keywords: Haematococcus pluvialis; Mixotrophy; Sodium acetate; Glucose; Mixotrophic metabolism
Strain(s): 144 
PubMed: 36332870
DOI: 10.1016/j.biortech.2022.128218
Ju, C., Van de Poel, B., Cooper,E.D., Thierer, J., Gibbons, T., Delwiche, C.F., Chang, C. 2015 Conservation of ethylene as a plant hormone over 450 million years of evolution. Nature Plants, 1, 14004 (article ID).
Strain(s): 995 
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Jung, J, Baek, J. H., Lee, Y., Jeong, S. E., Jeon, C. O. 2022 The self-Bleaching process of Microcystis aeruginosa is delayed by a symbiotic bacterium Pseudomonas sp. MAE1-K and promoted by methionine deficiency. Microbiol. Spectr., 10, e0181422 (article ID).
Keywords: Microcystis aeruginosa; bleaching; methionine deficiency; Pseudomonas; metZ mutant; bleaching compounds
Strain(s): 298 
PubMed: 35771009
DOI: 10.1128/spectrum.01814-22
Jung, J., Seo, Y. L., Jeong, S. E., Baek, J. H., Park, H. Y., Jeon, C. O. 2022 Linear six-carbon sugar alcohols induce lysis of Microcystis aeruginosa NIES-298 cells. Front. Microbiol., 13, 834370 (article ID).
Strain(s): 298 
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Jung, J.-M., Lee, Y.-J., Park, H.-K., Jung, E.-Y., Joo, G.-J. 2003 The analysis of cyanobacterial neurotoxins by high-performance liquid chromatography-mass spectrometry. Algae, 18, 233-238.
Keywords: anatoxin-a; Aphanizomenon flos-aquae; cyanobacterial toxins; LC-MS; saxitoxin
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DOI: 10.4490/ALGAE.2003.18.3.23
Jung, P., D'Agostino, P. M., Brust, K., Büdel, B., Lakatos, M. 2021 Final destination? Pinpointing Hyella disjuncta sp. nov. PCC 6712 (Cyanobacteria) based on taxonomic aspects, multicellularity, nitrogen fixation and biosynthetic gene clusters. Life-Basel, 11, 916 (article ID).
Strain(s): 5923754 
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Jung, S. W., Kim, B.-H., Katano, T., Kong, D.-S., Han, M.-S. 2008 Pseudomonas flurescens HYK0210-SK09 offers species-specific biological control of winter algal blooms caused by freshwater diatom Stephanodiscus hantzschii. J. Appl. Microbiol., 105, 186-195.
Keywords: algicidal bacterium; algicidal mechanism; biological control; indoor mesocosm; Pseudomonas fluorescens; Stephanodiscus hantzschii
Strain(s): 1944298 
PubMed: 18266701
DOI: 10.1111/j.1365-2672.2008.03733.x
Jung, S.-H., McHardy, C., Rauh, C., Jahn, A., Luzi, G., Delgado, A., Buchholz, R., Lindenberger, C. 2021 A new approach for calculating microalgae culture growth based on an inhibitory efect of the surrounding biomass. Bioprocess. Biosyst. Eng., 44, 1671-1684.
Keywords: Algae cultivation; Numerical methods; Growth kinetics; Inhibitory efects
Strain(s): 39 
PubMed: 33860849
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Kabata, K., Sadakane, H., Kurose, M., Kobayakawa, A., Watanabe, T., Hatano, S. 1980 Changes in fatty acid composition of membrane fractions during hardening of Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 25, 91-97.
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Kabata, K., Sadakane, H., Miyachi, S., Nagata, K., Hatano, S., Watanabe, T. 1979 Studies on lipid changes during the development of frost hardiness in Chlorella ellipsoidea. J. Fac. Agr., Kyushu Univ., 23, 155-161.
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Kaeriyama, H., Katsuki, E., Otsubo, M., Yamada, K., Ichimi, K., Tada, K., Harrison, P. J. 2011 Effects of temperature and irradiance on growth of strains belonging to seven Skeletonema species isolated from Dokai Bay, southern Japan. Eur. J. Phycol., 46, 113-124.
Keywords: Dokai Bay; irradiance; physiology; Skeletonema species; specific growth rate; temperature
Strain(s): 2837283828392841284228432844 
DOI: 10.1080/09670262.2011.565128
Kaewpintong, K., Shotipruk, A., Powtongsook, S., Pavasant, P. 2007 Photoautotrophic high-density cultivation of vegetative cells of Haematococcus pluvialis in airlift bioreactor. Bioresour. Technol., 98, 288-295.
Keywords: Airlift bioreactors; Astaxanthin; Autotrophic; Bioprocess design; Bubble columns; Microalgae
Strain(s): 144 
PubMed: 16516464
DOI: 10.1016/j.biortech.2006.01.011
Kai, A., Yoshii, Y., Nakayama, T., Inouye, I. 2008 Aurearenophyceae classis nova, a new class of Heterokontophyta based on a new marine unicellular alga Aurearena cruciata gen. et sp. nov. inhabiting sandy beaches. Protist, 159, 435-457.
Keywords: flagellar apparatus; Phaeophyceae; Phaeothamniophyceae; pigment composition; Xanthophyceae; phylogeny
Strain(s): 1862186318641865 
PubMed: 18358776
DOI: 10.1016/j.protis.2007.12.003
Kajikawa, M., Yamato, K. T., Kohzu, Y., Shoji, S., Sakai, Y., Fukuzawa, H. 2006 A front-end desaturase from the green alga Chlamydomonas reinhardtii produces pinolenic and coniferonic acids by ω13 desaturation in methylotrophic yeast and tobacco. Plant Cell Physiol., 47, 64-73.
Keywords: Chlamydomonas reinhardtii; Δ5-unsaturated bis-methylene-interrupted fatty acids; fatty acid desaturase; Pichia pastoris; tobacco plant
Strain(s): 2235 
PubMed: 16267098
DOI: 10.1093/pcp/pci224
Kajiwara, S., Kakizono, T., Saito, T., Kondo, K., Ohtani, T., Nishio, N., Nagai, S., Misawa, N. 1995 Isolation and functional identification of a novel cDNA for astaxanthin biosynthesis from Haematococcus pluvialis, and astaxanthin synthesis in Escherichia coli. Plant Mol. Biol., 29, 343-352.
Keywords: astaxanthin; canthaxanthin; carotenoid; xanthophyll; Haematococcus pluvialis; green alga
Strain(s): 144 
PubMed: 7579184
DOI: 10.1007/BF00043657
Kakimoto, M., Ishikawa, T., Miyagi, A., Saito, K., Miyazaki, M., Asaeda, T., Yamaguchi, M., Uchiyama, H., Kawai-Yamada, M. 2014 Culture temperature affects gene expression and metabolic pathways in the 2-methylisoborneol-producing cyanobacterium Pseudanabaena galeata. J. Plant Res., 171, 292-300.
Keywords: 2-MIB; Cyanobacteria; Gene expression; Metabolomics; Temperature-induction
Strain(s): 512 
PubMed: 24140001
DOI: 10.1016/j.jplph.2013.09.005
Kakizono, T., Kobayashi, M., Nagai, S. 1992 Effect of carbon/nitrogen ratio on encystment accompanied with astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 403-405.
Strain(s): 144 
DOI: 10.1016/0922-338X(92)90041-R
Kakuta, S., Suzaki, T. 2007 Ca2+- and glycoconjugates-dependent prey capture in the heliozoan Actinophrys sol. Eur. J. Protistol., 44, 163-167.
Keywords: calium ion influx; Con A; exocytosis; extrusome; glycoprotein; secretory granule
Strain(s): 2497 
PubMed: 18178392
DOI: 10.1016/j.ejop.2007.11.001
Kamata, K., Piao, Z., Suzuki, S., Fujimori, T., Tajiri, W., Nagai, K., Iyoda, T., Yamada, A., Hayakawa, T., Ishiwara, M., Horaguchi, S., Belay, A., Tanaka, T., Takano, K., Hangyo M. 2014 Spirulina-templated metal microcoils with controlled helical structures for THz electromagnetic responses. Sci Rep, 4, 4919 (article ID).
Strain(s): 3946 
PubMed: 24815190
DOI: 10.1038/srep04919
Kamaya,Y., Tsuboi, S., Takada, T., Suzuki, K. 2006 Growth stimulation and inhibition effects of 4-hydroxybenzoic acid and some related compounds on the freshwater green alga Pseudokirchneriella subcapitata. Arch. Environ. Contam. Toxicol., 51, 537-541.
Strain(s): 35 
PubMed: 16998630
DOI: 10.1007/s00244-005-0320-4
Kamei-Ishikawa, N., Maeda, T., Soma, M., Yoshida, N., Sameshima, Y., Sasamoto, M., Higashiyama, Y., Touno, E., Ito, A. 2020 Tylosin degradation during manure composting and the effect of the degradation byproducts on the growth of green algae. Sci. Total Environ., 718, 137295 (article ID).
Keywords: Sheep feces; Half-life; Thermal degradation; Elution from artificial rainwater; Acute toxicity test; Raphidocelis subcapitata
Strain(s): 35 
PubMed: 32087586
DOI: 10.1016/j.scitotenv.2020.137295
Kameyama, K., Sugiura, N., Isoda, H., Inamori, Y., Maekawa, T. 2002 Effect of nitrate and phosphate concentration on production of microcystins by Microcystis viridis NIES 102. Aquat. Ecosyst. Health Manag., 5, 443–449.
Keywords: growth phase
Strain(s): 102 
DOI: 10.1080/14634980290001995
Kamikawa, R. et al. 2022 Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Sci. Adv., 8, eabi5075 (article ID).
Strain(s): 4239 
PubMed: 35486731
DOI: 10.1126/sciadv.abi5075
Kamikawa, R., Asai, J., Miyahara, T., Murata, K., Oyama, K., Yoshimatsu, S., Yoshida, T., Sako, Y. 2006 Application of a real-time PCR assay to a comprehensive method of monitoring harmful algae. Mircobes Environ., 21, 163-173.
Keywords: harmful algal bloom (HAB); molecular monitoring; real-time PCR; red tide
Strain(s): 7121603 
DOI: 10.1264/jsme2.21.163
Kamikawa, R., Azuma, T., Ishii, K-I., Matsuno, Y., Miyashita, H. 2018 Diversity of organellar genomes in non-photosynthetic diatoms. Protist, 169, 351-361.
Keywords: ATP synthase complex; mitochondria; Nitzschia; plastids; vitamin B1
Strain(s): 272935763581 
PubMed: 29803116
DOI: 10.1016/j.protis.2018.04.009
Kamikawa, R., Brown, M. W., Nishimura, Y., Sako, Y., Heiss, A. A., Yubuki, N., Gawryluk, R., Simpson, A. G. B., Roger, A. J., Hashimoto, T., Inagaki, Y. 2013 Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes. BMC Evol. Biol., 13, 131 (article ID).
Keywords: Diatoms; Differential Gene Loss; EF-1α; EFL; Functional Remodeling; Goniomonas; Pythium; Spizellomyces; Thecamonas
Strain(s): 4175341349137113731374 
PubMed: 23800323
DOI: 10.1186/1471-2148-13-131
Kamikawa, R., Masuda, I., Demura, M., Oyama, K., Yoshimatsu, S., Kawachi, M., Sako, Y. 2009 Mitochondrial group II introns in the Raphidophycean flagellate Chattonella spp. suggest a diatom-to-Chattonella lateral group II intron transfer. Protist, 160, 364-375.
Keywords: Chattonella; cytochrome c oxidase subunit 1 (cox1); diatoms; group II intron; lateral transfer; Raphidophyceae
Strain(s): 1231485861151181211614625575586036717168491303197519762391240124022403240434223429 
PubMed: 19346162
DOI: 10.1016/j.protis.2009.02.003
Kamikawa, R., Masuda, I., Oyama, K., Yoshimatsu, S., Sako, Y. 2007 Genetic variation in mitochondrial genes and intergenic spacer region in harmful algae Chattonella species. Fish. Sci., 73, 871-880.
Keywords: Chattonella sp.; cytochrome c oxidase subunit 1 (cox1); cytochrome c oxidase subunit 2 (cox2); genetic diversity; harmful algae; mitochondria
Strain(s): 123148586115118121161557558603671849342234283429 
DOI: 10.1111/j.1444-2906.2007.01408.x
Kamikawa, R., Sanchez-Perez, G. F., Sako, Y., Roger, A. J., Inagaki, Y. 2009 Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes. Mol. Phylogenet. Evol., 53, 565-570.
Keywords: Methionine adenosyltransferase; Lateral gene transfer; Diaoms; Aureococcus; Haptophytes; Cryptomonads
Strain(s): 1735041753458610451349 
PubMed: 19577655
DOI: 10.1016/j.ympev.2009.06.016
Kamikawa, R., Shiratori, T., Ishida, K-I., Miyashita, H., Roger, A. J. 2016 Group II intron-mediated trans-splicing in the green-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans. Genome Biol. Evol., 8, 458-466.
Keywords: Diphyllatia; introns; mitochondria; inverted repeats; trans-splicing
Strain(s): 3764 
PubMed: 26833505
DOI: 10.1093/gbe/evw011
Kamikawa, R., Tanifuji, G., Kawachi, M., Miyashita, H., Hashimoto, T., Inagaki, Y. 2015 Plastid genome-based phylogeny pinpointed the origin of the green-colored plastid in the dinoflagellate Lepidodinium chlorophorum. Genome Biol. Evol, 7, 1133–1140.
Keywords: genome reduction; Lepidodinium; Pedinophyceae; secondary plastids; plastid replacement
Strain(s): 1868 
PubMed: 25840416
DOI: 10.1093/gbe/evv060
Kamikawa, R., Tanifuji, Ishikawa, G. S., Ishii, K., Matsuno, Y., Onodera, N. T., Ishida, K-I., Hashimoto, T., Miyashita, H., Mayama, S., Inagaki, Y. 2015 Proposal of a Twin-arginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes. Mol. Biol. Evol., 32, 2598-2604.
Keywords: apochlorotic diatoms; nonphotosynthetic plastid genome; genome reduction; ATP synthase complex; Twin-arginine translocator
Strain(s): 3581 
PubMed: 26048548
DOI: 10.1093/molbev/msv134
Kamikawa, R., Yabuki, A., Nakayama, T., Ishida, K-I., Hashimoto, T., Inagaki, Y. 2011 Cercozoa comprises both EF-1α-containing and EFL-containing members. Eur. J. Protistol., 47, 24-28.
Keywords: Cercozoa; Elongation factor 1α; Elongation factor-like protein
Strain(s): 2378 
PubMed: 21071191
DOI: 10.1016/j.ejop.2010.08.002
Kamikawa, R., Yubuki, N., Yoshida, M., Taira, M., Nakamura, N., Ishida, K-I., Leander, B. S., Miyashita, H., Hashimoto, T., Mayama, S., Inagaki, Y. 2015 Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae). Phycol. Res., 63, 19-28.
Keywords: apochlorotic diatoms; genetic diversity; large subunit rRNA; molecular phylogenetic analysis; nonphotosynthetic plastids; plastid 16S rRNA
Strain(s): 357635773578357935803581 
DOI: 10.1111/pre.12072
Kamiya, A. 1988 Blue light-induced in vivo absorbance changes and in vitro activation of nitrate reductase in a nitrate-starved Chlorella mutant. Plant Cell Physiol., 29, 489-496.
Keywords: blue light effect; Chlorella; light-induced absorbancechange; NADH-nitrate reductase
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a077519
Kamiya, A. 1989 Effects of blue light and ammonia on nitrogen metabolism in a colorless mutant of Chlorella. Plant Cell Physiol., 30, 513-521.
Keywords: ammonia effect; blue light effect; Chlorella; glutamine synthetase; nitrate uptake; nitrogen metabolism
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a077770
Kamiya, A. & Miyachi, S. 1974 Effects of blue light on respiration and carbon dioxyde fixation in colorless Chlorella mutant cells. Plant Cell Physiol., 15, 927-937.
Strain(s): 2162 
DOI: 10.1093/oxfordjournals.pcp.a075082
Kamiya, A. & Miyachi, S. 1975 Blue light-induced formation of photphoenolpyruvate carboxylase in colorless Chlorella mutant cells. Plant Cell Physiol., 16, 729-736.
Strain(s): 2162 
Kamo, T., Shimogawara, K., Fukuzawa, H., Muto, S., Miyachi, S. 1990 Subunit constitution of carbonic anhydrase from Chlamydomonas reinhardtii. Eur. J. Biochem., 192, 557-562.
Strain(s): 2235 
PubMed: 2120056
DOI: 10.1111/j.1432-1033.1990.tb19261.x
Kanai, R., Aoki, S., Miyachi, S. 1965 Quantitative separation of inorganic polyphosphates in Chlorella cells. Plant Cell Physiol., 6, 467-473.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a079116
Kanai, R., Miyachi, S., Miyachi, S. 1963 Light-induced formation and mobilization of polyphosphate "C" in Chlorella cells. Plant Cell Physiol., Spec. Iss. (Studies on Microalgae and Photosynthetic Bacteria), 613-618.
Strain(s): 2170 
Kanazawa, T. 1958 Synchronous culture of Chlorella with special reference of the processes of assimilation of potassium magnesium and iron. J. Gen. Appl. Microbiol., 4, 102-107.
Strain(s): 2170 
DOI: 10.2323/jgam.4.102
Kanazawa, T., Fujita, C., Yuhara, T., Sasa, T. 1958 Mass culture of unicellular algae using "open circulation method". J. Gen. Appl. Microbiol., 4, 135-152.
Strain(s): 2170 
DOI: 10.2323/jgam.4.135
Kanazawa, T., Yanagisawa, T., Tamiya, H. 1966 Aliphatic amines occurring in Chlorella cells and changs of their contents during the life cycle of the alga. Z. Botanik, Festschr. f. E. Bünning, 54, 57-62.
Strain(s): 2170 
Kanda, H., Li, P., Ikehara, T., Yasumoto-Hirose, M. 2012 Lipids extracted from several species of natural blue–green microalgae by dimethyl ether: Extraction yield and properties. Fuel, 95, 88-92.
Keywords: Lipids; Microalgae; Extraction; Dimethyl ether
Strain(s): 5951263 
DOI: 10.1016/j.fuel.2011.11.064
Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H. 2017 CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex. Sci Rep, 7, 17873 (article ID).
Strain(s): 6768 
PubMed: 29259295
DOI: 10.1038/s41598-017-18251-8
Kaneko, H. & Yamaguchi, M. 1995 Toxicity evaluation of municipal solid waste incinerator fly ash by algal assay. Reports Facul. Eng. Yamanashi Univ., 46, 84-89 (in Japanese with English summary).
Strain(s): 35 
Kaneko, H., Shimada, A. Hirayama, K. 2004 Short-term algal toxicity test based on phosphate uptake. Water Res., 38, 2173-2177.
Keywords: Selenastrum capricornutum; Phosphate uptake; Short-term toxicity test
Strain(s): 35 
PubMed: 15087199
DOI: 10.1016/j.watres.2004.02.006
Kaneko, H., Yamaguchi, M., Ikeda, F. 1996 Toxicity of municipal solid waste incinerator fly ash and the contribution of Cadmium. J. Jpn. Soc. Wat. Environ. [Mizukankyô Gakkai Shi], 19, 563-568 (in Japanese with English summary).
Keywords: MWI fly ash; leachate; algal assay; Daphnia test; hazardous waste
Strain(s): 35 
Kaneko, T., Nakajima, N., Okamoto, S., Suzuki, I., Tanabe, Y., Tamaoki, M., Nakamura, Y., Kasai, F., Watanabe, A., Kawashima, K., Kishida, Y., Ono, A., Shimizu, Y., Takahashi, C., Minami, C., Fujishiro, T., Kohara, M., Katoh, M., Nakazaki, N., Nakayama, S., Yamada, M., Tabata, S., Watanabe, M. M. 2007 Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843. DNA Res., 14, 247-256.
Strain(s): 843 
PubMed: 18192279
DOI: 10.1093/dnares/dsm026
Kanesaki, Y., Imamura, S., Minoda, A., Tanaka, K. 2012 External light conditions and internal cell cycle phases coordinate accumulation of chloroplast and mitochondrial transcripts in the red alga Cyanidioschyzon merolae. DNA Res., 19, 289-303.
Keywords: cell cycle; clustering analysis; Cyanidioschyzon; organelle; transcriptome
Strain(s): 3377 
PubMed: 22518007
DOI: 10.1093/dnares/dss013
Kang, B.-H., Tan, S., Ho, K.-K. 1988 Isolation of water-soluble cytochromes from cyanobacteria by adsorption chromatography. Archi. Biochem. Biophys., 263, 387-393.
Strain(s): 44 
PubMed: 3132107
DOI: 10.1016/0003-9861(88)90650-9
Kang, C. B. H. & Ho. K.-K. 1991 Characteri-zation of a soluble inorganic pyrophosphatase from Microcystis aeruginosa. Archi. Biochem. Biophys., 289, 281-288.
Strain(s): 44 
PubMed: 1654852
DOI: 10.1016/0003-9861(91)90473-V
Kang, C. D., Lee, J. S., Park, T. H., Sim, S. J. 2005 Comparison of heterotrophic and photoautotrophic induction on astaxanthin production by Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 68, 237-241.
Strain(s): 144 
PubMed: 15711942
DOI: 10.1007/s00253-005-1889-2
Kang, C.-D., Sim, S.-J. 2008 Direct extraction of astaxanthin from Haematococcus culture using vegetable oils. Biotechnol. Lett., 30, 441–444.
Keywords: Astaxanthin; Direct extraction; Green process; Haematococcus pluvialis; Vegetable oil
Strain(s): 144 
PubMed: 17972016
DOI: 10.1007/s10529-007-9578-0
Kang, Y.-H., Park, C.-S., Han, M.-S. 2012 Pseudomonas aeruginosa UCBPP-PA14 a useful bacterium capable of lysing Microcystis aeruginosa cells and degrading microcystins. J. Appl. Phycol., 24, 1517-1525.
Keywords: Microcystis aeruginosa; Microcystins; Algicidal bacteria; Pseudomonas aeruginosa
Strain(s): 4494298 
DOI: 10.1007/s10811-012-9812-6
Kang, Y-H., Kang, S-K., Park, C-S., Joo, J-H., Lee, J-W., Han, M-S. 2016 Use of lactic acid bacteria as a biological agent against the cyanobacterium Anabaena flos-aquae. J. Appl. Phycol., 28, 1747-1757.
Keywords: Lactic acidbacteria; Cyanobacteriacidalbacteria; Anabaena flos-aquae; Biological control
Strain(s): 7594298 
DOI: 10.1007/s10811-015-0701-7
Kania, K., Zienkiewicz, M., Drożak, A. 2020 Stable transformation of unicellular green alga Coccomyxa subellipsoidea C-169 via electroporation. Protoplasma, 257, 607–611.
Keywords: Coccomyxa subellipsoidea C-169; Hygromycin B resistance; Electrotransformation; Electroporation; Stable genome transformation
Strain(s): 2166 
PubMed: 31741062
DOI: 10.1007/s00709-019-01447-2
Karan, T., Erenler, R., Altuner, Z. 2017 Isolation and molecular identification of some blue-green algae (cyanobacteria) from freshwater sites in Tokat province of Turkey. Turkish JAF Sci.Tech., 5
Keywords: Algae; 16S rRNA; Cyanobacteria; Molecular identification; Phycocyanine
Strain(s): 816 
DOI: 10.24925/turjaf.v5i11.1371-1378.1470
Kareya, M. S., Mariam, I., Shaikh, K. M., Nesamma, A. A., Jutur, P. P. 2020 Photosynthetic carbon partitioning and metabolic regulation in response to very-low and high CO2 in Microchloropsis gaditana NIES 2587. Front. Plant Sci., 11, 981 (article ID).
Keywords: Microchloropsis; biomass; carbon dioxide; oleaginous microalga; photosynthetic cell factories
Strain(s): 2587 
PubMed: 32719702
DOI: 10.3389/fpls.2020.00981
Kang, S., Kim, K.-H., Chung, N., Li, Z. 2023 A new omega-3 rich euglenoid Eutreptiella sp. from the Korean coastal waters. Algal Res., 75, 103296 (article ID).
Keywords: Euglenoids; Eutreptiella sp. KCTC 19016P; Fatty acids; Microalgae; Phytoplankton; Phylogenetic analysis
Strain(s): 473812305 
DOI: 10.1016/j.algal.2023.103296
Karlsson, K. 2005 Liquid chromatotraphy - mass spectrometry in distribution and bioaccumulation studies of toxic cyanopeptides. PhD thesis, Åbo Akademi University, Turku, Finland, 62 pp.
Strain(s): 107 
Karpf, S., Riche, C. T., Di Carlo, D., Goel, A., Zeiger, W. A., Suresh, A., Portera-Cailliau, C., Jalali, B. 2020 Spectro-temporal encoded multiphoton microscopy and fluorescence lifetime imaging at kilohertz frame-rates. Nat. Commun., 11, 2062 (article ID).
Strain(s): 48 
PubMed: 32346060
DOI: 10.1038/s41467-020-15618-w
Kasai, F. & Arts, M. T. 1998 The interactive effects of UV-B radiation and a herbicide on uptake and allocation of carbon in two strains of the green alga Scenedesmus. Aquat. Ecol., 31, 261-272.
Keywords: herbicide tolerance; photosynthesis; phytoplankton; simetryn; triazine herbicides; ultraviolet radiation
Strain(s): 802 
DOI: 10.1007/BF02493513
Kasai, F. & Hanazato, T. 1995 Genetic changes in phytoplankton communities exposed to the herbicide simetryn in outdoor experimental ponds. Arch. Environ. Contam. Toxicol., 28, 154-160.
Strain(s): 797798799800801802 
DOI: 10.1007/BF00217610
Kasai, F. & Hatakeyama, S. 1993 Herbicide susceptibility in two green algae, Chlorella vulgaris and Selenastrum capricornutum. Chemosphere, 27, 899-904.
Strain(s): 35227 
DOI: 10.1016/0045-6535(93)90019-2
Kasai, F. & Hatakeyama, S. 1996 Changes in herbicide susceptibility of algae in a river running through an agricultural region. Ecol. Chem. (St.Petersburg), 5, 292-296.
Keywords: algal community; herbicide; simetryn; pretilachlor; pollution; effects
Strain(s): 803804805 
Kasai, F. & Ichimura, T. 1986 Morphological variabilities of three closely related mating groups of Closterium ehrenbergii Meneghini (Chlorophyta). J. Phycol., 22, 158-168.
Keywords: cell shape and size; clonal culture; Closterium ehrenbergii; mating group; morphological variability; statistical analysis
Strain(s): 171228229 
DOI: 10.1111/j.1529-8817.1986.tb04159.x
Kasai, F. & Ichimura, T. 1990 Temperature optima of three closely related mating groups of the Closterium ehrenbergii (Chlorophyta) species complex. Phycologia, 29, 396-402.
Strain(s): 228229 
DOI: 10.2216/i0031-8884-29-4-396.1
Kasai, F., Takamura, N., Hatakeyama, S. 1993 Effects of simetryne on growth of various freshwater algal taxa. Environ. Pollut., 79, 77-83.
Strain(s): 35447377102137151230231255275280298 
DOI: 10.1016/0269-7491(93)90180-V
Kashem, MA., Kimoto, K., Iribe, Y., Suzuki, M. 2019 Development of microalgae biosensor chip by incorporating microarray oxygen sensor for pesticides sensing. Biosensors, 9, 133 (article ID).
Keywords: biosensor chip; fluorescence oxygen sensor; microalgae; pesticides
Strain(s): 35 
PubMed: 31726653
DOI: 10.3390/bios9040133
Kashino, Y., Enami, I., Satoh, K., Katoh, S. 1990 Immunological cross-reactivity among corresponding proteins of photosystems I and II from widely divergent photosynthetic organisms. Plant Cell Physiol., 31, 479-488.
Keywords: antiserum; cross-reactivity; immunoblotting; photosystem; protein
Strain(s): 209321382235 
DOI: 10.1093/oxfordjournals.pcp.a077935
Kashiyama Y., Yokoyama A., Kinoshita Y., Shoji S., Miyashiya H., Shiratori T., Suga H., Ishikawa K., Ishikawa A., Inouye I., Ishida K., Fujinuma D., Aoki K., Kobayashi M., Nomoto S., Mizoguchi T., Tamiaki H. 2012 Ubiquity and quantitative significance of detoxification catabolism of chlorophyll associated with protistan herbivory. Proc. Nati. Acad. Sci. U. S. A., 109, 17328-17335.
Keywords: phototoxicity of chlorophylls; microbial herbivory; phagocytosis; biodiversity of eukaryotes; microbial loop
Strain(s): 281 
PubMed: 22949677
DOI: 10.1073/pnas.1207347109
Kashiyama, Y. et al. 2019 Taming chlorophylls by early eukaryotes underpinned algal interactions and the diversification of the eukaryotes on the oxygenated Earth. ISME J., 13, 1899-1910.
Strain(s): 825427428632433135338149462362499710121013101513201330133313341335137213771388139013961397140814381439144118681964200821422144214923002305232524332498250225662584258625892590267728783356337437753876 
PubMed: 30809012
DOI: 10.1038/s41396-019-0377-0
Kataoka, H. 2019 Quantitative analysis of tip growth, phototropic responses, and other blue light-dependent photoresponses of Vaucheria. In Phototropism, Part of the Methods in Molecular Biology book series, Ed. by Yamamoto, K. T., Humana Press, New York, NY, 1924, pp. 83-120.
Keywords: Apical expansion; Aureochrome; Blue light; Branching; Ca2+ ion; Coenocyte; Lightgrowth response; Negative phototropism; Polarotropism; Positive phototropism; Split-field illumination method; Unilateral illumination method; Vaucheria
Strain(s): 26142615 
PubMed: 30694469
DOI: 10.1007/978-1-4939-9015-3_8
Kataoka, T., Homma, T., Nakano, S., Hodoki, Y., Ohbayashi, K., Kondo, R. 2013 PCR primers for selective detection of intra-species variations in the bloom-forming cyanobacterium, Microcystis. Harmful Algae, 23, 46-54.
Keywords: Microcystis aeruginosa; Quantitative PCR; 16S-23S rDNA ITS fegion; Selective detection; Intra-species variation
Strain(s): 4487909810110210310711111229860410621070 
DOI: 10.1016/j.hal.2012.12.003
Katayama, N. & MOsanai, T. 2022 Arginine inhibition of the argininosuccinate lyases is conserved among three orders in cyanobacteria. Plant Mol.Biol., 110, 13–22.
Keywords: Arginine biosynthesis; Argininosuccinate lyase; Cyanobacteria; Synechocystis
Strain(s): 39 
PubMed: 35583703
DOI: 10.1007/s11103-022-01280-x
Kato, A. & Sasaki, K. 1983 Effects of tunica-mycin on sexual reproduction in heterothallic strains of Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 1-6.
Strain(s): 6465 
Kato, A., Morita, N., Hiratsuka, T., Suda, S. 2009 Recent introduction of a freshwater red alga Chantransia macrospora (Batrachospermales, Rhodophyta) to Okinawa, Japan. Aquat. Invasions, 4, 567-574.
Keywords: Audouinella; Batrachospermum; Chantransia macrospora; freshwater algae; introduced species; macroalgae
Strain(s): 2636 
DOI: 10.3391/ai.2009.4.4.1
Kato, A., Obokata, J., Sasaki, K. 1981 Mating type interaction in Closterium peracerosum-strigosum-littorale: mating induced protoplast release. Plant Cell Physiol., 22, 1215-1222.
Keywords: Closterium peracerosum-strigosum-littorale; conjugation; disruped cell; mating type interaction; protoplast release
Strain(s): 6465 
DOI: 10.1093/oxfordjournals.pcp.a076273
Kato, A., Ohmura, K., Kanazawa, H., Sasaki, K. 1983 Natural and artificial production of protoplasts from heterothallic and homothallic Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 13, 7-15.
Strain(s): 6465 
Kato, K., Hamaguchi, T., Nagao, R., Kawakami, K., Ueno, Y., Suzuki, T., Uchida, H., Murakami, A., Nakajima, Y., Yokono, M., Akimoto, S., Dohmae, N., Yonekura, K., Shen, J.-R. 2022 Structural basis for the absence of low-energy chlorophylls in a photosystem I trimer from Gloeobacter violaceus. eLife, 11, e73990 (article ID).
Strain(s): 2134 
PubMed: 35404232
DOI: 10.7554/eLife.73990
Kato, K., Nagao, R., Ueno, Y., Yokono, M., Suzuki, T., Jiang, T.-Y., Dohmae, N., Akita, F., Akimoto, S., Miyazaki, N., Shen, J.-R. 2022 Structure of a tetrameric photosystem I from a glaucophyte alga Cyanophora paradoxa. Nat. Commun., 13, 1679 (article ID).
Strain(s): 547 
PubMed: 35354806
DOI: 10.1038/s41467-022-29303-7
Kato, S. & Nam, H. G. 2021 The cell division cycle of Euglena gracilis indicates that the level of circadian plasticity to the external light regime changes in prolonged-stationary cultures. Plants-Basel, 10, 1475 (article ID).
Keywords: aging; cell division; circadian plasticity; Euglena gracilis; microalgae; T-cycle
Strain(s): 48 
PubMed: 34371678
DOI: 10.3390/plants10071475
Kato, S., Higuchi, S., Kondo, Y., Kitano, S., Nozaki, H., Tanaka, J. 2005 Rediscovery of the wild-extinct species Nitellopsis obtusa (Charales) in Lake Kawaguchi, Japan. J. Jpn. Bot., 80, 84-91.
Keywords: Charales; Nitellopsis; rbcL gene; rediscovery; wild-extinct species
Strain(s): 1638 
Kato, S., Misumi, O., Maruyama, S., Nozaki, H., Tsujimoto-Inui, Y., Takusagawa, M., Suzuki, S., Kuwata, Noda, S., Ito, N., Okabe, Y., Sakamoto, Yagisawa, Y., Matsunaga, M. T., Matsubayashi, Y., Yamaguchi, H., Kawachi, M., Kuroiwa, H., Kuroiwa, T., Matsunaga, S. 2023 Genomic analysis of an ultrasmall freshwater green alga, Medakamo hakoo. Commun. Biol., 6, 89 (article ID).
Strain(s): 4000 
PubMed: 36690657
DOI: 10.1038/s42003-022-04367-9
Kato, S., Sakayama, H., Sano, S., Kasai, F., Watanabe, M. M., Tanaka, J., Nozaki, H. 2008 Morphological variation and intraspecific phylogeny of the ubiquitous species Chara braunii (Charales, Charophyceae) in Japan. Phycologia, 47, 191-202.
Keywords: aquatic habitat; Chara braunii; Charales; Charophyceae; intergenic spacer region; intraspecific phylogeny; morphological variation, rbcL gene
Strain(s): 1586158715881589159015911604 
DOI: 10.2216/07-27.1
Kato, T., Watanabe, M. F., Watanabe M. 1991 Allozyme divergence in Microcystis (Cyanophyceae) and its taxonomic inference. Algol. Stud., 64, 129-140.
Keywords: cyanophytes/cyanobacteria; Microcystis; allozyme divergence; allozyme genotype; allozyme study; cell size; molecular taxonomy
Strain(s): 105510581061106310641067106810701071107410771079108110841086109010911093109510971098 
Kato, T., Watanabe, M. F., Watanabe, M., Hara, Y. 1991 Allozyme genotype and toxin omposition of the Microcystis strains from Lake Okutama-ko (1). Bull. Natn. Sci. Mus., Tokyo, Ser., B 17, 1-4.
Strain(s): 11401141114511521159116011611163 
Kato, Y., Imamura, N., 2008 Effect of calcium ion on uptake of amino acids by symbiotic Chlorella F36-ZK isolated from Japanese Paramecium bursaria. Plant Sci., 174, 88-96.
Keywords: Paramecium bursaria; Chlorella; Calcium; Divalent cation; Amino acid transport; Symbiosis
Strain(s): 22721572540 
DOI: 10.1016/j.plantsci.2007.10.001
Kato, Y., Ueno, S., Imamura, N. 2006 Studies on the nitrogen utilization of endosymbiotic algae isolated from Japanese Paramecium bursaria. Plant Sci., 170, 481-486.
Keywords: Endosymbiont; Paramecium bursaria; Nitrogen utilization; Chlorella
Strain(s): 22725402541 
DOI: 10.1016/j.plantsci.2005.09.018
Katoh, H., Furukawa, J., Tomita-Yokotani, K. and Nishi 2012 Isolation and purification of an axenic diazotrophic drought-tolerant cyanobacterium, Nostoc commune, from natural cyanobacterial crusts and its utilization for field research on soils polluted with radioisotopes. Biochim. Biophys. Acta-Bioenerg., 18, 1499-1505.
Keywords: Cyanobacterium; Nostoc commune; Desiccation; Radiation; Space agriculture
Strain(s): 2114 
PubMed: 22417797
DOI: 10.1016/j.bbabio.2012.02.039
Katoh, H., Shiga, S., Nakahira, Y., Ohmori, M. 2003 Isolation and characterization of drought-tolerant cyanobacterium Nostoc sp. HK-01. Microbes Environ., 18, 82-88.
Keywords: cyanobacterium; drought-tolerance; hormogonia; Nostoc
Strain(s): 2109 
DOI: 10.1264/jsme2.18.82
Katoh, T. & Gantt, E. 1979 Photosynthetic vesicles with bound phycobilisomes from Anbaena variabilis. Biochim. Biophys. Acta, 546, 383-393.
Strain(s): 2093 
DOI: 10.1016/0005-2728(79)90075-6
Katoh, T., Hirokawa, T., Miyachi, S. 1958 Effect of pre-illumination upon the Hill reaction in Chlorella cells. J. Biochem., 45, 907-912.
Strain(s): 2170 
Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. 2015 Phylogenetic analysis of NAP, an unconventional actin of the Volvocales. Plant Syst. Evol., 301, 1725-1733.
Keywords: Volvocales; Divergent actin
Strain(s): 3515465767173374 
DOI: 10.1007/s00606-014-1187-5
Kato-Minoura, T., Okumura, M., Hirono, M., Kamiya, R. 2003 A novel family of unconventional actins in Volvocalean algae. J. Mol. Evol., 57, 555-561.
Keywords: Chlamydomonas; phylogeny; Volvocales
Strain(s): 158351546569 
PubMed: 14738314
DOI: 10.1007/s00239-003-2509-3
Katsuda, T., Lababpour, A., Shimahara, K., Katoh, S. 2004 Astaxanthin production by Haematococcus pluvialis under illumination with LEDs. Enzyme Microb. Technol., 35, 81-86.
Keywords: astaxanthin; light emitting diode; wavelength; accumulation of astaxanthin
Strain(s): 144 
DOI: 10.1016/j.enzmictec.2004.03.016
Katsuda, T., Shimahara, K., Shiraishi, H., Yamagami, K., Ranjbar, R., Katoh, S. 2006 Effect of flashing light from blue light emitting diodes on cell growth and astaxanthin production of Haematococcus pluvialis. J. Biosci. Bioeng., 102, 442-446.
Keywords: flashing light; blue light emitting diode; astaxanthin; Haematococcus pluvialis
Strain(s): 144 
PubMed: 17189172
DOI: 10.1263/jbb.102.442
Katsuda, T., Shiraishi, H., Ishizu, N., Ranjbar, R., Katoh, S. 2008 Effect of light intensity and frequency of flashing light from blue light emitting diodes on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 105, 216-220.
Keywords: flashing light; blue light emitting diode; light intensity; astaxanthin; Haematococcus pluvialis
Strain(s): 144 
PubMed: 18397771
DOI: 10.1263/jbb.105.216
Katsumata, M., Ikushima, Y., Bennett, K., Sato, Y., Takeuchi, A., Tatarazako, N., Hakamata, T. 2017 Validation of rapid algal bioassay using delayed fluorescence in an interlaboratory ring study. Sci. Total Environ., 605-606, 842-851.
Keywords: Chemical toxicity test; Growth inhibition; Alga; Delayed fluorescence; Surrogate of biomass
Strain(s): 35 
PubMed: 28683428
DOI: 10.1016/j.scitotenv.2017.06.228
Katsumata, M., Koike, T., Nishikawa, M., Kazumura, K., Tsuchiya, H. 2006 Rapid ecotoxicological bioassay using delayed fluorescence in the green alga Pseudokirchneriella subcapitata. Water Res., 40, 3393-3400.
Keywords: Delayed fluorescence; Algal growth inhibition test; Pseudokirchneriella subcapitata; Simazine (CAT); 3,5-dichlorophenol (3,5-DCP)
Strain(s): 35 
PubMed: 16970970
DOI: 10.1016/j.watres.2006.07.016
Kawachi, M., Kataoka, T., Sato, M., Noël, M.-H., Kuwata, A., Demura, M., Yamaguchi, H. 2016 Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community. Gene, 576, 708-716.
Keywords: 18S rRNA gene; 454 pyros equencing; Cryopreservation; Photosynthetic picoeukaryotes
Strain(s): 76519662842 
PubMed: 26506442
DOI: 10.1016/j.gene.2015.10.033
Kawachi, M., Nakayama, T., Kayama, M., Nomura, M., Miyashita, H., Bojo, O., Rhodes, L., Sym, S., Pienaar, R. N., Probert, I., Inouye, I., Kamikawa, R. 2021 Rappemonads are haptophyte phytoplankton. Curr. Biol., 31, 2395-2403.
Strain(s): 3900 
PubMed: 33773100
DOI: 10.1016/j.cub.2021.03.012
Kawafune K., Hongoh, Y., Hamaji, T ., Sakamoto, T., Kurata, T., Hirooka, S., Miyagishima, S., Nozaki, H. 2015 Two different rickettsial bacteria invading Volvox carteri. PLoS One, 10, e0116192 (article ID).
Strain(s): 397398732733866 
PubMed: 25671568
DOI: 10.1371/journal.pone.0116192
Kawafune, K., Hongoh, Y., Hamaji, T., Nozaki, H. 2012 Molecular identification of rickettsial endosymbionts in the non-phagotrophic Volvocalean green algae. PLoS One, 7, e31749 (article ID).
Strain(s): 425577 
PubMed: 22363720
DOI: 10.1371/journal.pone.0031749
Kawafune, K., Hongoh, Y., Nozaki, H. 2014 A rickettsial endosymbiont inhabiting the cytoplasm of Volvox carteri (Volvocales, Chlorophyceae). Phycologia, 53, 95-99.
Keywords: Endosymbiont; Fluorescence in situ hybridization; Phylogenetic analysis; Rickettsia; Rickettsiaceae; Volvox carteri
Strain(s): 424425577 
DOI: 10.2216/13-193.1
Kawafune, K., Sato, M., Toyooka, K., Nozaki, H. 2013 Ultrastructure of the rickettsial endosymbiont "MIDORIKO" in the green alga Carteria cerasiformis as revealed by high-pressure freezing and freeze-substitution fixation. Protoplasma, 250, 949-953.
Keywords: Transmission electron microscopy; High-pressure freezing and freeze-substitution fixation; Rickettsiaceae; Endosymbiont; Carteria cerasiformis
Strain(s): 424426 
PubMed: 23178999
DOI: 10.1007/s00709-012-0469-4
Kawaguchi, Y. W., Tsuchikane, Y., Tanaka, K., Taji, T., Suzuki, Y., Toyoda, A., Ito, M., Watano, Y., Nishiyama, T., Sekimoto, H., Tsuchimatsu, T. 2023 Extensive copy number variation explains genome size variation in the unicellular Zygnematophycean alga, Closterium peracerosum–strigosum–littorale complex. Genome Biol. Evol., 15, evad115 (article ID).
Keywords: gene duplication; dosage compensation; copy number variation; green algae
Strain(s): 53545859626364656826126664319432043214548455045514552 
PubMed: 37348049
DOI: 10.1093/gbe/evad115
Kawahara, K., Sagehashi, M., Fujii, T., Fujita, H., Hu, H.-Y., Sakoda, A. 2011 Potential of a green alga Botryococcus braunii for simultaneous water purification and biofuel production under open-air condition. J. Water Environ. Technol., 9, 29-37.
Keywords: biofuel production; Botryococcus braunii; Microcystis aeruginosa; water purification
Strain(s): 878361090 
DOI: 10.2965/jwet.2011.29
Kawahara, T., Kumaki, Y., Kamada, T., Ishii, T., Okino, T. 2009 Absolute configuration of chlorosulfolipids from the chrysophyta Ochromonas danica. J. Org. Chem., 74, 6016-6024.
Strain(s): 2142 
PubMed: 19627129
DOI: 10.1021/jo900860e
Kawahata, C., Yamamuro, M., Shiraiwa, Y. 2013 Changes in alkaline band formation and calcification of corticated charophyte Chara globularis. SpringerPlus, 2, 85 (article ID).
Keywords: Chara corallina; Chara globularis; Alkaline band; Acid band; SEM
Strain(s): 1585 
PubMed: 23543879
DOI: 10.1186/2193-1801-2-85
Kawai, H., Inouye, I. 1989 Flagellar autofluorescence in forty-four chloraphyll c-containig algae. Phycologia, 28, 222-227.
Strain(s): 515161 
DOI: 10.2216/i0031-8884-28-2-222.1
Kawai, H., Maeba, S., Sasaki, H., Okuda, K., Henry, E. C. 2003 Schizocladia ischiensis: a new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae. Protist, 154, 211-228.
Strain(s): 1044 
PubMed: 13677449
DOI: 10.1078/143446103322166518
Kawai, J., Kanazawa, M., Suzuki, R., Kikuchi, N., Hayakawa, Y., Sekimoto, H. 2022 Highly efficient transformation of the model zygnematophycean alga Closterium peracerosum-strigosum-littorale complex by square-pulse electroporation. New Phytol., 233, 569-578.
Keywords: Closterium; electroporation; evolution; transformation; Zygnematophyceae
Strain(s): 6768 
PubMed: 34605030
DOI: 10.1111/nph.17763
Kawai, S., Araki, S., Kodama, Y. 2017 No mutual symbiosis following infection of algae-free Paramecium bursaria with symbiotic algae from Mayorella viridis. Symbiosis, 75, 51-59.
Keywords: Algae; Endosymbiosis; Mayorella viridis; Paramecium bursaria; Phalloidin
Strain(s): 692 
DOI: 10.1007/s13199-017-0517-0
Kawakami, K., Hamaguchi, T., Hirose, Y., Kosumi, D., Miyata, M., Kamiya, N., Yonekura, K. 2022 Core and rod structures of a thermophilic cyanobacterial light-harvesting phycobilisome. Nat. Commun., 13, 3389 (article ID).
Strain(s): 2134 
PubMed: 35715389
DOI: 10.1038/s41467-022-30962-9
Kawakami, K., Nagao, R., Tahara, Y. O., Hamaguchi, T., Suzuki, T., Dohmae, N., Kosumi, D., Shen, J.-R., Miyata, M., Yonekura, K., Kamiya, N. 2021 Structural implications for a phycobilisome complex from the thermophilic cyanobacterium Thermosynechococcus vulcanus. Biochim. Biophys. Acta-Bioenerg., 1862, 148458 (article ID).
Keywords: Cyanobacteria; Electron microscopy; GraFix; Phycobilisome
Strain(s): 2134 
PubMed: 34062150
DOI: 10.1016/j.bbabio.2021.148458
Kawamura, K., Sumii, K., Matsumoto, M., Nakase, D., Kosaki, Y., Ishikawa, M. 2018 Determining the optimal cultivation strategy for microalgae for biodiesel production using flow cytometric monitoring and mathematical modeling. Biomass Bioenerg., 117, 24-31.
Keywords: Biofuel; Logistic equation; Optimal cultivation; Simulation model; Triacylglycerols
Strain(s): 2168 
DOI: 10.1016/j.biombioe.2018.07.005
Kawanobe, K. 1990 A report in the completion of the research work [Chôsa kenkyû syûryô hôkoku]. Unpublished report in Kankyô Hozen Kyôkai, 3 pp. (in Japanese).
Strain(s): 35227 
Kawasaki, S., Yoshida, R., Ohkoshi, K., Toyoshima, H., 2020 Coelastrella astaxanthina sp. nov. (Sphaeropleales, Chlorophyceae), a novel microalga isolated from an asphalt surface in midsummer in Japan. Phycol. Res., 68, 107-114.
Keywords: astaxanthin; dry conditions; photo-oxidative stress; Scenedesmaceae; terrestrial microalgae
Strain(s): 2151 
DOI: 10.1111/pre.12412
Kawase, Y.2, Imamura, S., Tanaka, K. 2017 A MYB-type transcription factor, MYB2, represses light-harvesting protein genes in Cyanidioschyzon merolae. FEBS Lett., 591, 2439-2448.
Keywords: dark acclimation; MYB-type transcription factor; phycobilisome
Strain(s): 3377 
PubMed: 28748638
DOI: 10.1002/1873-3468.12763
Kaya, K. & Sano, T. 1998 A photodetoxifi-cation mechanism of the cyanobacterial hepatotoxin microcystin-LR by ultraviolet irradiation. Chem. Res. Toxicol., 11, 159-163.
Strain(s): 88 
Kaya, K. & Watanabe, M. M. 1990 Microcystin composition of an axenic clonal strain of Microcystis viridis and Microcystis viridis-containing waterblooms in Japanese freshwaters. J. Appl. Phycol., 2, 173-178.
Keywords: axenic Microcystis viridis; microcystin; toxic waterbloom; Japanese lakes
Strain(s): 102 
DOI: 10.1007/BF00023379
Kaya, K., Sano, T. 2016 Chapter 18. Cyanobacterial retinoids. In Handbook of cyanobacterial monitoring and cyanotoxin analysis, Eds. byMeriluoto, J., Spoof, L., Codd, G. A., John Wiley & Sons, Ltd. pp. 173-178.
Strain(s): 364445462045126101222 
DOI: 10.1002/9781119068761.ch18
Kaya, K., Shiraishi, F., Uchida, H., Sano, T. 2011 A novel retinoic acid analogue, 7-hydroxy retinoic acid, isolated from cyanobacteria. Biochim. Biophys. Acta-Gen. Subj., 1810, 414-419.
Keywords: 7-hydroxy retinoic acid; RAR agonistic activity; cyanobacteria; UV stability
Strain(s): 444546512610931 
PubMed: 21145941
DOI: 10.1016/j.bbagen.2010.11.009
Kayama, M., Chen, J.-F., Nakada, T., Nishimura, Y., Shikanai, T., Azuma, T., Miyashita, H., Takaichi, S., Kashiyama, Y., Kamikawa, R. 2020 A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems. BMC Biol., 18, 126 (article ID).
Keywords: Carotenoid; NADPH; Non-photosynthetic plastid; Plastoquinol; Plastid terminal oxidase; Transient RNA interference knockdown
Strain(s): 4405 
PubMed: 32938439
DOI: 10.1186/s12915-020-00853-w
Kayano, K. & Shiraiwa, Y. 2009 Physiological regulation of coccolith polysaccharide production by phosphate availability in the coccolithophorid Emiliania huxleyi. Plant Cell Physiol., 50, 1522-1531.
Strain(s): 837 
PubMed: 19587028
DOI: 10.1093/pcp/pcp097
Kayano, K., Saruwatari, K., Kogure, T., Shiraiwa, Y. 2011 Effect of coccolith polysaccharides isolated from the coccolithophorid, Emiliania huxleyi, on calcite crystal formation in in vitro CaCO3 crystallization. Mar. Biotechnol., 13, 83-92.
Keywords: Acid polysaccharide; Biomineralization; Coccolith; Coccolith polysaccharide; Calcium carbonate crystalization; Emiliania huxleyi
Strain(s): 837 
PubMed: 20336339
DOI: 10.1007/s10126-010-9272-4
Keawtawee, T., Fukami, K., Songsangjinda, P., Muangyao, P. 2011 Isolation and characterization of Noctiluca-killing bacteria from a shrimp aquaculture pond in Thailand. Fish. Sci., 77, 657-664.
Keywords: Algicidal bacteria; Noctiluca scintillans; HABs; Shrimp aquacluture
Strain(s): 16 
DOI: 10.1007/s12562-011-0373-4
Keeling, p. J., Palmer, J. D. 2001 Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc. Nati. Acad. Sci. U. S. A., 98, 10745-10750.
Keywords: phylogeny; protein insertions; apicomplexa; recombination
Strain(s): 484 
PubMed: 11526220
DOI: 10.1073/pnas.191337098
Kenzaki, A., Okunishi, S., Tomoda, T., Shioura, Y., Uchida, M., Tezuka, N., Maeda, H. 2022 Observation of the feeding behaviour of reared Japanese eel Anguilla japonica leptocephali fed picocyanobacteria Synechococcus spp. J. Fish Biol., 100, 727-737.
Keywords: Anguilla japonica; density dependence; feeding behaviour; feeding selectivity; photoperiodic condition
Strain(s): 972976979 
PubMed: 34958491
DOI: 10.1111/jfb.14986
Kerfeld, CA., Melnicki, MR., Sutter M., Dominguez-Martin, MA. 2017 Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs. New Phytol., 215, 937-951.
Keywords: carotenoids; carotenoproteins; cyanobacteria; nonphotochemical quenching; photoprotection; phylogenomics; protein structure; singlet oxygen (1O2) quenching
Strain(s): 3981843 
PubMed: 28675536
DOI: 10.1111/nph.14670
Keshari, N., Gugger, M., Zhu, T., Lu, X. 2019 Compatible solutes profiling and carbohydrate feedstock from diversified cyanobacteria. Algal Res., 43, 101637 (article ID).
Keywords: Cyanobacteria; Compatible solutes; Glucosylglycerol (GG); Sucrose; Trehalose; Glycogen
Strain(s): 315921031 
DOI: 10.1016/j.algal.2019.101637
Kessenich, C. R., Ruck, E. C., Schurko, A. M., Wickett, N. J., Alverson, A. J. 2014 Transcriptomic insights into the life history of Bolidophytes, the sister lineage to diatoms. J. Phycol., 50, 977-983.
Keywords: Bolidomonas; diatoms; diplontic; haplodiplontic; life cycle; Parmales; transcriptome
Strain(s): 2682 
PubMed: 26988780
DOI: 10.1111/jpy.12222
Kessler, E. & Huss, V. A. R. 1992 Comparative physiology and biochemistry and taxonomic assignment of the Chlorella (Chlorophyceae) strains of the Culture Collection of the University of Texas at Austin. J. Phycol., 28, 550-553.
Keywords: chemotaxonomy; Chlorella; Chlorophyta; UTEX culture collection; utilization for research and biotechnology
Strain(s): 6866872150215121602163216921752176 
DOI: 10.1111/j.0022-3646.1992.00550.x
Kettler, G., Martiny, A. C., Huang, K., Zucker, J., Coleman, M. L., Rodrigue, S., Chen, F., Lapidus, A., Ferriera, S., Johnson, J., Steglich, C., Church, G. M., Richardson, P., Chisholm, S. W. 2007 Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS One, 3, e231 (article ID).
Strain(s): 28813376 
PubMed: 18159947
DOI: 10.1371/journal.pgen.0030231
Khan, S. M. M. K., Arikawa, M., Omura, G., Suetomo, Y., Kakuta, S., Suzaki, T. 2003 Axopodial contraction in the heliozoon Raphidiophrys contractilis requires extracellular Ca2+. Zool. Sci., 20, 1367-1372.
Keywords: contraction; microtubules; contractile tubules; heliozoa; calcium
Strain(s): 2498 
DOI: 10.2108/zsj.20.1367
Khan, S. M. M. K., Arikawa, M., Suzaki, T. 2005 Toxic effect of heavy metal ions on the axopodia of the heliozoon Raphidiophrys contractilis. Jpn. J. Protozool., 38, 44-45.
Strain(s): 2498 
Khan, S. M. M. K., Yoshimura, C., Arikawa, M., Omura, G., Nishiyama, S., Suetomo, Y., Kakuta, S., Suzaki, T. 2006 Axopodial degradation in the heliozoon Raphidiophrys contractilis: a novel bioassay system for detecting heavy metal toxicity in an aquatic environment. Environ. Sci., 13, 193-200.
Strain(s): 2498 
PubMed: 17095991
Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y. 2017 Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex. Chemosphere, 175, 200-209.
Keywords: Sinking rate; Thalassiosira pseudonana; Skeletonema marinoi-dohrnii complex; Diuron
Strain(s): 324 
PubMed: 28222374
DOI: 10.1016/j.chemosphere.2017.02.054
Khoo, K. S., Lee, S. Y., Ooi, C. W., Fu, X., Miao, X., Ling, T. C., Show, P. L. 2019 Recent advances in biorefinery of astaxanthin from Haematococcus pluvialis. Bioresour. Technol., 288, 121606 (article ID).
Keywords: Astaxanthin; Haematococcus pluvialis; Cultivation; Pretreatment; Biorefinery
Strain(s): 144 
PubMed: 31178260
DOI: 10.1016/j.biortech.2019.121606
Khudzari, J., Fukuda, S., Shiraiwa, Y., Iwamoto, K. 2022 Kinetic properties of 137Cs uptake by the cesium‑accumulating eustigmatophycean microalga. Environ. Sci. Pollut. Res., 30, 34460–34467.
Keywords: 137Cs; Radioactive cesium-accumulating mechanism; Cesium-accumulating microalgae; Vacuoliviride crystalliferum (eustigmatophyceae); Radiocesium phycoremediation
Strain(s): 2860 
PubMed: 36509956
DOI: 10.1007/s11356-022-24573-6
Ki, J.-S. & Han, M.-S. 2007 Nuclear rDNA and chloroplast rbcL, rbcS and IGS sequence data, and their implications from the Japanese, Korean, and North American harmful algae, Heterosigma akashiwo (Raphidophyceae). Environ. Res., 103, 299-304.
Keywords: Heterosigma akashiwo; blooms; nuclear rDNA; rbcS; IGS
Strain(s): 293 
DOI: 10.1016/j.envres.2006.08.014
Ki, J.-S. & Han, M.-S. 2007 Rapid molecular identification of the harmful freshwater dinoflagellate Peridinium in various life stages using genus-specific single-cell PCR. J. Appl. Phycol., 19, 467-470.
Keywords: dinoflagellate cyst; planozygote; rDNA
Strain(s): 495 
DOI: 10.1007/s10811-007-9157-8
Kim, B.-H., Oh, H.-M., Lee, Y.-K., Choi, G.-G., Ahn, C.-y., Yoon, B.-D., Kim, H.-S., 2006 Simple method for RNA preparation from cyanobacteria. J. Phycol., 42, 1137-1141.
Keywords: bead–phenol–chloroform method; cyanobacteria; RNA extraction; xanthogenate–SDS–phenol method
Strain(s): 3339230 
DOI: 10.1111/j.1529-8817.2006.00263.x
Kim, B.-H., Ramanan, R., Cho, D.-H., Choi, G.-G., La, H.-J., Ahn, C.-Y., Oh, H.-M., Kim, H.-S. 2012 Simple, rapid and cost-effective method for high quality nucleic acids extraction from different strains of Botryococcus braunii. PLoS One, 7, e37770 (article ID).
Strain(s): 836 
PubMed: 22662217
DOI: 10.1371/journal.pone.0037770
Kim, B.-H., Ramanan, R., Kang, Z., Cho, D.-H., Oh, H.-M., Kim, H.-S. 2016 Chlorella sorokiniana HS1, a novel freshwater green algal strain, grows and hyperaccumulates lipid droplets in seawater salinity. Biomass Bioenerg., 85, 300-305.
Keywords: Chlorella; Salt stress; Green algae; Lipid droplets; Biodiesel; Commercialization
Strain(s): 2150 
DOI: 10.1016/j.biombioe.2015.12.026
Kim, B.-H., Sang, M., Hwang, S.-J., Han, M.-S. 2008 In situ bacterial mitigation of the toxic cyanobacterium Microcystis aeruginosa: implications for biological bloom control. Limnol. Oceanogr. Meth., 6, 513-522.
Strain(s): 1944101298 
DOI: 10.4319/lom.2008.6.513
Kim, C.-J., Hung, Y.-H., Oh, H.-M, 2007 Factors indicating culture status during cultivation of Spirulina (Arthrospira) platensis. J. Microbiol., 45, 122-127.
Keywords: coil number; culture status; syanobacteria; floating activity; Spirulona platensis
Strain(s): 3946 
PubMed: 17483796
Kim, C.-J., Jung, Y.-H., Ahn, C.-Y., Lee, Y.-K., Oh, H.-M. 2010 Adsorption of turbid materials by the cyanobacterium Phormidium parchydematicum. J. Appl. Phycol., 22, 181-186.
Keywords: Chlorella vulgaris; Clay; Cyanobacteria; Phormidium parchydematicum; Turbid material
Strain(s): 39 
DOI: 10.1007/s10811-009-9440-y
Kim, D., Nakamura, A., Okamoto, T., Komatsu, N., Oda, T., Ishimatsu, A., Muramatsu, T. 1999 Toxic potential of the raphidophyte Olisthodiscus luteus: mediation by reactive oxygen species. J. Plankton Res., 21, 1017-1027.
Strain(s): 15 
DOI: 10.1093/plankt/21.6.1017
Kim, D., Oda, T., Ishimatsu, A., Muramatsu, T. 2000 Galacturonic-acid-induced increase of superoxide production in red tide phytoplankton Chattonella marina and Heterosigma akashiwo. Biosci. Biotechnol. Biochem., 64, 911-914.
Keywords: red tide plankton; Chattonella marina; Heterosigma akashiwo; galacturonic acid; reactive oxygen species
Strain(s): 6 
PubMed: 10830520
DOI: 10.1271/bbb.64.911
Kim, D., Okamoto, T., Oda, T., Tachibana, K., Lee, K. S., Ishimatsu, A., Matsuyama, Y., Honjo, T., Muramatsu, T. 2001 Possible involvement of the glycocalyx in the ichthyotoxicity of Chattonella marina (Raphidophyceae): immunological approach using antiserum against cell surface structures of the flagellate. Mar. Biol., 139, 625-632.
Strain(s): 615 
DOI: 10.1007/s002270100614
Kim, D., Sato, Y., Oda, T., Muramatsu, T., Matsuyama, Y., Honjo, T. 2000 Specific toxic effect of dinoflagellate Heterocapsa circularisquama on the rotifer Brachionus plicatilis. Biosci. Biotechnol. Biochem., 64, 2719-2722.
Keywords: red tide; Heterocapsa circularisquama; rotifer; toxicity; dinoflagellate
Strain(s): 6 
PubMed: 11210146
DOI: 10.1271/bbb.64.2719
Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2004 Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua. Aquat. Microb. Ecol., 35, 57-64.
Keywords: Cell cycles; Chattonella antiqua; Hydrogen peroxide; NIES culture tank; Reactive oxygen species; Red tide; Superoxide anion
Strain(s): 1 
DOI: 10.3354/ame035057
Kim, D., Waranabe, M., Nakayasu, Y., Kohata, K. 2005 Changes in O2- and H2O2 production by Chattonella antiqua during diel vertical migration under nutrient stratification. Aquat. Microb. Ecol., 39, 183-191.
Keywords: Chattonella antiqua; Diel vertical migration; Hydrogen peroxide; Nutrient stratification; Reactive oxygen species; Superoxide anion
Strain(s): 1 
DOI: 10.3354/ame039183
Kim, E., Graham, L. E. 2008 EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS One, 3, e0002621 (article ID).
Strain(s): 1335 
PubMed: 18612431
DOI: 10.1371/journal.pone.0002621
Kim, E., Simpson, A. G., Graham, L. E. 2006 Evolutionary relationships of apusomonads inferred from taxon-rich analyses of nuclear encoded genes. Mol. Biol. Evol., 23, 2455-2466.
Keywords: Apusomonas; Apusomonadidae; Opisthokonta; Amoebozoa; protists; evolution
Strain(s): 93695513331335 
PubMed: 16982820
DOI: 10.1093/molbev/msl120
Kim, E., Wilcox, L. W., Fawley, M. W., Graham, L. E. 2006 Phylogenetic position of the green flagellate Mesostigma viride based on alpha-tubulin and beta-tubulin gene sequences. Int. J. Plant Sci., 167, 873-883.
Keywords: Mesostigma; Coleochaete; Pterosperma; Nephroselmis; Mantoniella; Streptophyta; Viridiplantae; α-tubulin; β-tubulin
Strain(s): 955 
DOI: 10.1086/504391
Kim, J. I., Shin, W., Treimer, R. E. 2010 Multigene analyses of photosynthetic euglenoids and new family, Phacaceae (Euglenales). J. Phycol., 46, 1278-1287.
Keywords: discoid chloroplast; Euglenaceae; Euglenales; multigene analysis; Phacaceae; phylogeny; synapomorphy
Strain(s): 381 
DOI: 10.1111/j.1529-8817.2010.00910.x
Kim, J.-H., Park, B. S., Kim, J. H. 2023 Comprehensive understanding of the life history of harmful raphidophyte Heterosigma akashiwo: Integrating in situ and in vitro observations. Harmful Algae, 129, 102521 (article ID).
Keywords: Heterosigma akashiwo; Harmful alga; Raphidophyceae; Life history; Life cycle; Sexual reproduction; Hologamete; Homothallism; Zygote (large cell); Multiple cells; Cell cluster; Cyst cluster
Strain(s): 5293 
PubMed: 37951620
DOI: 10.1016/j.hal.2023.102521
Kim, K., Yoon, Y., Cho, H., Hwang, S. J 2020 Molecular probes to evaluate the synthesis and production potential of an odorous compound (2-methylisoborneol) in cyanobacteria. Int. J. Environ. Res. Public Health, 17, 1933 (article ID).
Keywords: 2-Methylisoborneol (2-MIB); cyanobacteria; molecular probes; mibC; real-time PCR
Strain(s): 19512824 
PubMed: 32188031
DOI: 10.3390/ijerph17061933
Kim, M., Shin, B., Lee, J., Park, H. Y., Park, W. 2019 Culture-independent and culture-dependent analyses of the bacterial community in the phycosphere of cyanobloom-forming Microcystis aeruginosa. Sci Rep, 9, 20416 (article ID).
Strain(s): 298 
PubMed: 31892695
DOI: 10.1038/s41598-019-56882-1
Kim, M.-C., Yoshinaga, I., Imai, I., Nagasaki, K., Itakura, S., Ishida, Y. 1998 A close relationship between algicidal bacteria and termination of Heterosigma akashiwo (Raphidophyceae) blooms in Hiroshima Bay, Japan. Mar. Ecol. Prog. Ser., 170, 25-32.
Keywords: algicidal bacteria; marine bacteria; marine phytoplankton; red tide; bloom; Raphidophyceae; Heterosigma akashiwo
Strain(s): 1 
DOI: 10.3354/meps170025
Kim, T. Y., Hong, J. E., Park, H. M., Lee, U. J., Lee, S-Y. 2020 Decontamination of low-level contaminated water from radioactive cesium and cobalt using microalgae. J. Radioanal. Nucl. Chem., 323, 903-908.
Keywords: Radionuclide; Microalgae; Cobalt; Cesium; Decontamination; Biosorption
Strain(s): 2860 
DOI: 10.1007/s10967-019-07008-4
Kim, Y. E., Matter, I. A., Lee, N., Jung, M., Lee, Y. C., Choi, S. A., Lee, S. Y., Kim, J. R., Oh, Y. K. 2020 Enhancement of astaxanthin production by Haematococcus pluvialis using magnesium aminoclay nanoparticles. Bioresour. Technol., 307, 123270 (article ID).
Keywords: Haematococcus pluvialis; Astaxanthin; Nanoparticle; Aminoclay; Lipid
Strain(s): 144 
PubMed: 32253126
DOI: 10.1016/j.biortech.2020.123270
Kim, Y.-S., Oyaizu, H., Matsumoto, S, Watanabe, M. M., Nozaki, H. 1994 Chloroplast small-subunit ribosomal RNA gene sequence from Chlamydomonas parkeae (Chlorophyta) : molecular phylogeny of a green alga with a peculiar pigment composition. Eur. J. Phycol., 29, 213-217.
Keywords: Chlamydomonas parkeae; Chlorophyta; chloroplast small-subunit (SSU) rRNA; phylogeny; pigment composition
Strain(s): 228254440468666 
DOI: 10.1080/09670269400650661
Kimbara, R., Isaka, N., Matsuzaki, R., Kawai-Toyooka, H., Kawachi, M., Nozaki, H. 2019 Morphological and molecular identification of the dioecious “African species Volvox rousseletii (Chlorophyceae) in the water column of a Japanese lake based on field-collected and cultured materials. PLoS One, 14, e0221632 (article ID).
Strain(s): 4336433743384339434043414342 
PubMed: 31465476
DOI: 10.1371/journal.pone.0221632
Kimpel, D. L., Togasaki, R. K., Miyachi, S. 1983 Carbonic anhydrase in Chlamydomonas reinhardtii I. Localization. Plant Cell Physiol., 24, 255-259.
Keywords: carbonic anhydrase; cell wall-less mutant; Chyamydomonas reinhardtii; periplasm; wall lysing enzyme
Strain(s): 22372238 
DOI: 10.1093/pcp/24.2.255
Kimura, B. & Ishida, Y. 1985 Photophago-trophy in Uroglena americana , Chrysophyceae. Jpn. J. Limnol., 46, 315-318.
Strain(s): 395 
Kimura, B. & Ishida, Y. 1986 Possible phago-trophic feeding of bacteria in a freshwater red tide Chrysophyceae Uroglena americana. Bull. Jpn. Soc. Sci. Fish., 52, 697-701.
Strain(s): 395 
Kimura, B., Ishida, Y., Kadota, H. 1986 Effect of naturally collected bacteria on growth of Uroglena americana, a freshwater red tide Chrysophyceae. Bull. Jpn. Soc. Sci. Fish., 52, 691-696.
Strain(s): 395 
Kimura, J. 2011 Screening for allelopathic activity on algal growth. Bull. Hiroshima Pref. Tech. Res. Inst., Publ. Health Environ. Center, 19, 37-46 (in Japanese).
Keywords: Microcystis; Chlorella; Nitzschia; growth inhibition; allelopathy
Strain(s): 88487642 
Kimura, K. & Tomaru, Y. 2017 Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses. Aquat. Microb. Ecol., 79, 79-83.
Keywords: Water temperature; Water salinity; Host-virus interactions; Diatom lysis
Strain(s): 37143716 
DOI: 10.3354/ame01818
Kimura, K., Tomaru, Y. 2013 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. strain SS628-11 isolated from western Japan. PLoS One, 8, e82013 (article ID).
Strain(s): 3718 
PubMed: 24358139
DOI: 10.1371/journal.pone.0082013
Kimura, S., Yamada, T., Ban, S., Koyama, M., Toda, T. 2019 Nutrient removal from anaerobic digestion effluents of aquatic macrophytes with the green alga, Chlorella sorokiniana. Biochem. Eng. J., 142, 170-177.
Keywords: Chlorella sorokiniana; anaerobic digestion effluent; maximum algal yield; nutrient removal rate; aquatic macrophytes
Strain(s): 2173 
DOI: 10.1016/j.bej.2018.12.001
Kimura, Y., Kimura, S., Sato, S., Katho, H., Abe, T., Arai, M., Tomita-Yokotani, K. 2015 Evoluation of a cyanobacterium, Nostoc sp. HK-01, as food material for space agriculture on Mars. Biological Sciences in Space, 29, 24-31.
Keywords: Cyanobacteria; Food; Martian regolith simulant (MRS); Nostoc sp. HK-01; Radicalscavenging activity; Space Agriculture
Strain(s): 21092114 
DOI: 10.2187/bss.29.24
Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017 Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01. Biological Sciences in Space, 31, 1-8.
Keywords: compatible solute; cyanobacteria; extracellular polysaccharides; heat tolerance; life cycle of cell; Nostoc sp. HK-01
Strain(s): 2109 
DOI: 10.2187/bss.31.1
Kinegawa, R., Gala de Pablo, J., Wang, Y., Hiramatsu, K., Goda, K. 2023 Label-free multiphoton imaging flow cytometry. Cytom. Part A, , 584-592.
Strain(s): 2175 
PubMed: 36799568
DOI: 10.1002/cyto.a.24723
Kinoshita, E., Suzaki, T., Shigenaka, Y. 2001 The ultrastructure of contractile tubules in the heliozoan Actinophrys sol and their possible involvement in rapid axopodial contraction. J. Eucaryot. Microbiol., 48, 519-526.
Keywords: Axopodium; Ca2+-contraction; colchicine; electron microscopy
Strain(s): 2497 
PubMed: 11596916
DOI: 10.1111/j.1550-7408.2001.tb00187.x
Kinoshita, E., Suzaki, T., Sugiyama, M., Shigenaka, Y. 1995 Ultrastructure and rapid axopodial contraction of a heliozoan, Raphidiophyrys contractilis sp. nov. J. Eucaryot. Microbiol., 42, 283-288.
Keywords: Contraction; Heliozoa; microtubule pattern; new species; Raphidiophyrys; silicic scale; X-ray microanalysis
Strain(s): 24983374 
DOI: 10.1111/j.1550-7408.1995.tb01581.x
Kinugawa, K., Etoh, M., Kuba, T., Kusuda, T. 1999 A possibility of control and prevention of excessive phytoplankton growth by photochromism. J. Jpn. Soc. Wat. Environ., 22, 932-937 (in Japanese with English summary).
Keywords: photochromism; spironaphthoxazine; shielding sunlight; algal growth potential; eutrophication
Strain(s): 98 
Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017 Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities. Algal Res., 21, 213-222.
Keywords: Microalgae; Immobilized cultivation; Irradiation; Carbon dioxide; Twin-Layer; Carotenoid
Strain(s): 144 
DOI: 10.1016/j.algal.2016.10.025
Kishi, M. & Toda, T. 2018 Carbon fixation properties of three alkalihalophilic microalgal strains under high alkalinity. J. Appl. Phycol., 30, 401–410.
Keywords: Algae; Cyanobacteria; Carbon dioxide; Alkalinity; Growth optimization
Strain(s): 392257 
DOI: 10.1007/s10811-017-1226-z
Kishi, M., Kawai, M., Toda, T. 2015 Heterotrophic utilization of ethylene glycol and propylene glycol by Chlorella protothecoides. Algal Res., 11, 428-434.
Keywords: algae; Chlorella protothecoides; Ethylene glycol; Propylene glycol; Heterotrophic; pH
Strain(s): 215121682170 
DOI: 10.1016/j.algal.2015.04.020
Kishi, M., Yamada, Y., Katayama, T., Matsuyama, T., Toda, T. 2020 Carbon mass balance in Arthrospira platensis culture with medium recycle and high CO2 supply. Appl. Sci., 10, 228 (article ID).
Keywords: Arthrospira; carbon dioxide; CO2 capture and utilization; mass balance; medium recycle; pH
Strain(s): 39 
DOI: 10.3390/app10010228
Kisugi, T. & Okino, T. 2009 Micropeptins from the freshwater cyanobacterium Microcystis aeruginosa (NIES-100). J. Nat. Prod., 72, 777-781.
Strain(s): 100 
PubMed: 19260658
DOI: 10.1021/np800631t
Kitamura, N., Nakagawa, T., Yoshida, Y., Matsushima, H., Asada, Y. 2006 Studies on the growth control of toxic cyanobacteria by use of the water-extracts from the dead leaves of deciduous trees. Environ. Eng. Res. [Kankyô-kôgaku Kenkyû Ronbunshû], 43, 543-549.
Keywords: growth control; Microcystis aeruginosa; dead-leaves; deciduous trees; condensed tannin
Strain(s): 102 
DOI: 10.11532/proes1992.43.543
Kiyohara, T., Fujita, Y., Hattori, A., Watanabe, A. 1962 Effect of light on glucose assimilation in Tolypothrix tenuis. J. Gen. Appl. Microbiol., 8, 165-168.
Strain(s): 37 
Klemenčič, M., Funk, C. 2018 Structural and functional diversity of caspase homologues in non-metazoan organisms. Protoplasma, 255, 387-397.
Strain(s): 448432549 
PubMed: 28744694
DOI: 10.1007/s00709-017-1145-5
Ko, S. R., Lee, Y. K., Srivastava, A., Park, S. H., Ahn, C. Y., Oh, H. M. 2019 The selective inhibitory activity of a fusaricidin derivative on a bloom-Forming cyanobacterium, Microcystis sp. J. Microbiol. Biotechnol., 29, 59-65.
Keywords: Bloom control; cyanobacteria; fusaricidin; Microcystis; Paenibacillus polymyxa
Strain(s): 2394 
PubMed: 30394041
DOI: 10.4014/jmb.1804.04031
Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide,, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989.
Keywords: coherent X-ray diffraction imaging; X-ray free-electron laser; frozen-hydrated non-crystalline specimens; cryogenic X-ray diffraction experiment; structures of cells and cellular organelles
Strain(s): 2087 
PubMed: 27359147
DOI: 10.1107/S1600577516007736
Kobayashi, A., Takayama, Y., Hirakawa, T., Okajima, K., Oide, M., Oroguchi, T., Inui, Y., Yamamoto, M., Matsunaga, S., Nakasako, M. 2021 Common architectures in cyanobacteria Prochlorococcus cells visualized by X-ray diffraction imaging using X-ray free electron laser. Sci Rep, 11, 3877 (article ID).
Strain(s): 2087 
PubMed: 33594220
DOI: 10.1038/s41598-021-83401-y
Kobayashi, H., Ohta, S., Murao, N., Tachibana, H., Yamagata, S. 2000 Radiative transfer model for satellite remote sensing of ocean colors in coastal zones. J. Global Environ. Eng., 6, 13-31.
Keywords: equation of radiative transfer; coastal pollution; discharge of soil particle; red tide
Strain(s): 16 
DOI: 10.1117/12.411675
Kobayashi, K., Kimura, S., Togawa, E., Wada, M. 2013 Thermal expansion behavior of hydrate paramylon in the low-temperature region. Carbohydr. Polym., 91, 543-548.
Keywords: Paramylon; (1 → 3)-B-D-Glucan; Synchrotron X-ray powder diffraction; Solid-state 13C NMR; Thermal expansion; Phase transition
Strain(s): 48 
PubMed: 23121943
DOI: 10.1016/j.carbpol.2012.08.067
Kobayashi, M. 2000 In vivo antioxidant role of astaxanthin under oxidative stress in the green alga Haematococcus pluvialis. Appl. Microbilo. Biotechnol., 54, 550-555.
Strain(s): 144 
PubMed: 11092631
DOI: 10.1007/s002530000
Kobayashi, M., Hatta, K., Sugai, M. 1987 Endopolyploidy in Chlorella. Arch. Mikrobiol., 146, 309-314.
Strain(s): 2170 
DOI: 10.1007/BF00410927
Kobayashi, M., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1997 Abscisic acid-dependent algal morphogenesis in the unicellular green alga Haematococcus pluvialis. Plant Growth Regulation, 22, 79-85.
Keywords: abscisic acid; active oxygen; carotenoid; cyst formation; drought stress; Haematococcus pluvialis
Strain(s): 144 
DOI: 10.1023/A:1005862809711
Kobayashi, M., Kakizono, T., Nagai, S. 1991 Astaxanthin production by a green alga, Haematococcus pluvialis accompanied with morphological changes in acetate media. J. Ferment. Bioeng., 71, 335-339.
Strain(s): 144 
DOI: 10.1016/0922-338X(91)90346-I
Kobayashi, M., Kakizono, T., Nagai, S. 1993 Enhanced carotenoid biosynthesis by oxidative stress in acetate-induced cyst cells of a green unicellular alga, Haematococcus pluvialis. Appl. Environ. Microbiol., 59, 867-873.
Strain(s): 144 
PubMed: 16348895
DOI: 10.1128/AEM.59.3.867-873.1993
Kobayashi, M., Kakizono, T., Nagai, S. 1993 Photo-dependent astaxanthin biosynthesis in a green alga, Haematococcus pluvialis. Seibutsu-Kôgaku, 71, 233-237 (in Japanese with English summary).
Strain(s): 144 
Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S. 1992 Effects of light intensity, light quality, and illumination cycle on astaxanthin formation in a green alga, Haematococcus pluvialis. J. Ferment. Bioeng., 74, 61-63.
Strain(s): 144 
DOI: 10.1016/0922-338X(92)90271-U
Kobayashi, M., Kakizono, T., Nishio, N., Nagai, S., Kurimura, Y., Tsuji, Y. 1997 Antioxidant role of astaxanthin in the green alga Haematococcus pluvialis. Appl. Microbiol. Biotechnol., 48, 351-356.
Strain(s): 144 
DOI: 10.1007/s002530051
Kobayashi, M., Kakizono, T., Yamaguchi, K., Nishio, N., Nagai, S. 1992 Growth and asta-xanthin formation of Haematococcus pluvialis in heterotrophic and mixotrophic conditions. J. Ferment. Bioeng., 74, 17-20.
Strain(s): 144 
Kobayashi, M., Kurimura, Y., Kakizono, T., Nishio, N., Tsuji, Y. 1997 Morphological changes in the life cycle of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 84, 94-97.
Keywords: astaxanthin; encystment; germination; Haematococcus pluvialis; life cycle; maturation
Strain(s): 144 
DOI: 10.1016/S0922-338X(97)82794-8
Kobayashi, M., Kurimura, Y., Sakamoto, Y., Tsuji, Y. 1997 Selective extraction of astaxanthin and chlorophyll from the green alga Haematococcus pluvialis. Biotechnol. Tech., 11, 657-660.
Strain(s): 144 
DOI: 10.1023/A:1018455209445
Kobayashi, M., Kurimura, Y., Tsuji, Y. 1997 Light-independent, astaxanthin production by the green microalga Haematococcus pluvialis under salt stress. Biotechnol. Lett., 19, 507-509.
Strain(s): 144 
DOI: 10.1023/A:1018372900649
Kobayashi, M., Okada, T. 2000 Protective role of astaxanthin against u.v.-B irradiation in the green alga Haematococcus pluvialis. Biotechnol. Lett., 22, 177-181.
Keywords: antioxidant; astaxanthom; Haematococcus pluvialis oxidative stress; u.v.-B;
Strain(s): 144 
DOI: 10.1023/A:100564960983
Kobayashi, M., Todoroki, Y., Hirai, N., Kurimura, Y., Ohigashi, H., Tsuji, Y. 1998 Biological activities of abscisic acid analogs in the morphological change of the green alga Haematococcus pluvialis. J. Ferment. Bioeng., 85, 529-531.
Keywords: abscisic acid; astaxanthin; carotenogenesis; drought stress; encystment; plant hormone; Haematococcus pluvialis
Strain(s): 144 
DOI: 10.1016/S0922-338X(98)80076-7
Kobayashi, T. Takahara, M., Miyagishima, S, Kuroiwa, H., Sasaki, N., Ohta, N., Kuroiwa, T. 2002 Detection and localization of a chloroplast-encoded HU-like protein that may organize chloroplast nucleoids. Plant Cell, 14, 1579-1589.
Strain(s): 3377 
PubMed: 12119376
DOI: 10.1105/tpc.002717
Kobayashi, Y., Kanesaki, Y., Tanaka, A., Kuroiwa, H., Kuroiwa, T., Tanaka, K. 2009 Tetrapyrrole signal as a cell-cycle coordinator from organelle to nuclear DNA replication in plant cells. Proc. Nati. Acad. Sci. U. S. A., 106, 803-807.
Strain(s): 3377 
PubMed: 19141634
DOI: 10.1073/pnas.0804270105
Kobayashi, Y., Takusagawa, M., Harada, N., Fukao, Y., Yamaoka, S., Kohchi, T., Hori, K., Ohta, H., Shikanai, T., Nishimura, Y. 2016 Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. Genome Biol. Evol., 8, 1-16.
Keywords: chloroplast; nucleoid; evolution; endosymbiosis
Strain(s): 2285 
PubMed: 26608058
DOI: 10.1093/gbe/evv233
Kodani, S. 2002 Studies on antialgal compounds of algicidal bacteria. PhD thesis, University of Tokyo, Japan, 87 pp.
Strain(s): 19 
Kodani, S., Imoto, A., Mitsutani, A., Murakami, M. 2002 Isolation and identification of the antialgal compound, harmane (1-methyl-B-carboline), produced by the algicidal bacterium, Pseudomonas sp. K44-1. J. Appl. Phycol., 14, 109-114.
Keywords: Algicidal bacteria; Antialgal compound; Cyanobacteria; Harmane; Pseudomonas sp.; Water bloom
Strain(s): 1923102227299446506 
DOI: 10.1023/A:1019533414018
Kodani, S., Ishida, K., Murakami, M. 1998 Aeruginosin 103-A, a thrombin inhibitor from the cyanobactrium Microcystis viridis. J. Nat. Prod., 61, 1046-1048.
Strain(s): 103 
PubMed: 9722497
DOI: 10.1021/np980106w
Kodani, S., Ishida, K., Murakami, M. 1998 Dehydroradiosumin, a trypsin inhibitor from the cyanobacterium Anabaena cylindrica. J. Nat. Prod., 61, 854-856.
Strain(s): 19 
PubMed: 9644086
DOI: 10.1021/np980048e
Kodani, S., Ishida, K., Murakami, M. 1999 Occurrence and identification of UDP-N-acetylmuramyl-pentapeptide from the cyanobacterium Anabaena cylindrica. FEMS Microbiol. Lett., 176, 321-325.
Keywords: cyanobacterium; UDP-N-acetylmuramyl-pentapeptide; peptidoglycan
Strain(s): 19 
PubMed: 10427714
DOI: 10.1111/j.1574-6968.1999.tb13678.x
Koeduka, T., Ishizaki, K., Mwenda, C. M., Hori, K., Sasaki-Sekimoto, Y., Ohta, H., Kohchi, T., Matsui, K. 2015 Biochemical characterization of allene oxide synthases from the liverwort Marchantia polymorpha and green microalgae Klebsormidium flaccidum provides insight into the evolutionary divergence of the plant CYP74 family. Planta, 242, 1175-1186.
Keywords: Allene oxide synthase; Plant evolution; CYP74; Hydroperoxide lyase; C8 volatiles
Strain(s): 2285 
PubMed: 26105654
DOI: 10.1007/s00425-015-2355-8
Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 2 protoplast induction and regeneration of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 279-286.
Strain(s): 68521632189 
Koga, T., Arasaki, T., Tanaka, T., Ueda, S. 1991 Studies on cell fusion of microalgae, part 3 interspecific cell fusion of Chlorella. Annu. Rep. Kumamoto Kogyo Univ., 17, 287-293.
Strain(s): 68521632189 
Kohata, K. & Watanabe, M. 1984 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (II) - Growth of Heterosigma akashiwo, red tide flagellate, in Microcosm. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 111-121 (in Japanese with English summary).
Strain(s): 6 
Kohata, K. & Watanabe, M. 1986 Synchronous division and the pattern of diel vertical migration of Heterosigma akashiwo (Hada) Hada (Raphidophyceae) in a laboratory culture tank. J. Exp. Mar. Biol. Ecol., 100, 209-224.
Keywords: cell division; culture tank; DCMU-induced fluorescence; Heterosigma akashiwo; vertical migration
Strain(s): 6 
DOI: 10.1016/0022-0981(86)90163-2
Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (V) - Growth and cell volume change of Heterosigma akashiwo, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 57-66 (in Japanese with English summary).
Strain(s): 6 
Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VI) - Diurnal changes of C/N ratio and distribution of chloroplast pigments in the culture of Chattonella antiqua, a red tide flagellate. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 67-77 (in Japanese with English summary).
Strain(s): 1 
Kohata, K. & Watanabe, M. 1987 The use of a controlled experimental ecosystem (Microcosm) in studies of mechanism of red tide outbreaks (VII) - Growth and its mathematical model of Heterosigma akashiwo, a red tide flagellate, in light-limited synchronous cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 79-88 (in Japanese with English summary).
Strain(s): 6 
Kohata, K. & Watanabe, M. 1988 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Chattonella antiqua (Raphidophyceae). J. Phycol., 24, 58-66.
Keywords: carotenoids; cellular carbon; Chattonella antiqua; chlorophyll; diel change; laboratory culture tank; light-dark cycles
Strain(s): 1 
DOI: 10.1111/j.1529-8817.1988.tb04456.x
Kohata, K. & Watanabe, M. 1989 Diel changes in the composition of photosynthetic pigments and cellular carbon and nitrogen in Pyramimonas parkeae (Prasinophyceae). J. Phycol., 25, 377-385.
Keywords: carotenoids; cellurar carbon; chlorophyll; diel change; laboratory culture tank; light-dark cycles; loroxanthin dodecenoate; Pyremimonas parkeae
Strain(s): 254 
DOI: 10.1111/j.1529-8817.1989.tb00134.x
Kohata, K., Watanabe, M. M., Nakamura, Y., Watanabe, M. 1982 Growth and phosphate uptake kinetics in Olisthodiscus luteus: grown on synchronized batch cultures. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 95-111 (in Japanese with English summary).
Strain(s): 6 
Kohata, K., Watanabe, M., Yamanaka, K. 1991 Highly sensitive determination of photosynthetic pigments in marine in situ samples by high-performance liquid chromatography. J. Chromatogr. A 558, 131-140.
Strain(s): 67254323353 
DOI: 10.1016/0021-9673(91)80118-Z
Koike, H., Shibata, M., Yasutomi, K., Kashino, Y., Satoh, K. 2000 Identification of photosystem I components from a glaucocystophyte, Cyanophora paradoxa: The PsaD protein has an N-terminal stretch homologous to higher plants. Photosynth. Res., 65, 207-217.
Keywords: Cyanophora paradoxa; glaucocystophyte; light harvesting complex; photosystem I; PsaD; PsaL
Strain(s): 547 
DOI: 10.1023/A:1010734912776
Kojima, E. & Yamaguchi, Y. 1988 Photoproduction of hydrogen by adapted cells of Chlorella pyrenoidosa. J. Ferment. Technol., 66, 19-25.
Strain(s): 685 
DOI: 10.1016/0385-6380(88)90124-0
Kolisko, M., Silberman, J. D., Cepicka, I., Yubuki, N., Takishita, T., Yabuki, A., Leander, B. S., Inouye, I., Inagaki, Y., Roger, A., Simpson, A. G. B. 2010 A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats. Environ. Microbiol., 12, 2700-2710.
Strain(s): 1968 
PubMed: 20482740
DOI: 10.1111/j.1462-2920.2010.02239.x
Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.” Photosynth. Res., 130, 445-467.
Keywords: Chlorophyll; Divinyl chlorophyll; Pheophytin; Photosynthesis; Prochlorococcus
Strain(s): 2086208728843376 
PubMed: 27334004
DOI: 10.1007/s11120-016-0283-5
Komor, E., Cho, B.-H., Kraus, M. 1988 The occurrence of the glucose-inducible transport systems for glucose, proline, and arginine in different species of Chlorella. Botanica Acta, 101, 321-326.
Keywords: Amino acid transport; induction by glucose; Chlorella; classification
Strain(s): 6872150 
DOI: 10.1111/j.1438-8677.1988.tb00051.x
Kondo, F., Ikai, Y., Oka, H., Ishikawa, N., Watanabe, M. F., Watanabe, M., Harada, K., Suzuki, M. 1992 Separation and identification of microcystins in cyanobacteria by frit-fast atom bombardment liquid chromatography / mass spectrometry. Toxicon, 30, 227-237.
Strain(s): 1213 
PubMed: 1529459
DOI: 10.1016/0041-0101(92)90865-3
Kondo, R. & Okamura, T. 2017 Growth and grazing kinetics of the facultative anaerobic nanoflagellate, Suigetsumonas clinomigrationis. Microbes Environ., 32, 80-83.
Keywords: anaerobic flagellate; growth rate; ingestion rate; Lake Suigetsu
Strain(s): 3647 
PubMed: 28190796
DOI: 10.1264/jsme2.ME16113
Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M. 2000 Genetic typing of a bloom-forming cyanobacterial genus Microcystis in Japan using 16S rRNA gene sequence analysis. Plankton Biol. Ecol., 47, 1-6.
Keywords: genetic typing; 16S rDNA; Microcystis; cyanobacteria; phylogenetic analysis
Strain(s): 878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
Kondo, R., Kagiya, G., Hiroishi, S., Watanabe, M., Hata, Y. 1999 Rapid DNA extraction from a bloom-forming cyanobacterium. Microbes Environ., 14, 157-161.
Keywords: DNA extraction; PCR; Microcystis; cyanobacteria
Strain(s): 878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
DOI: 10.1264/jsme2.14.157
Kondo, R., Kagiya, G., Komura, M., Yuki, Y., Hiroishi, S., Watanabe, M. 2000 Molecular taxonomy of a bloom-forming cyanobacterial genus Microcystis. Bull. Plankton Soc. Japan, 47, 25-33 (in Japanese with English summary).
Keywords: cyanobacteria; Microcystis; bacterial criteria; molecular analysis
Strain(s): 6878889909198991001011021041051061081091101111122982996041055106110681076109010911105112211421164 
Kondo, R., Kagiya, G., Yuki, Y., Hiroishi, S., Watanabe, M. 1998 Taxonomy of a bloom-forming cyanobacterial genus Microcystis. Nippon Suisan Gakkaishi, 64, 291-292 (in Japanese with English title).
Strain(s): 87888990919899100101102104105106107108109110111112298299604 
Kondo, R., Komura, M., Hiroishi, S., Hata, Y. 1998 Detection and 16S rDNA sequence analysis of a bloom-forming cyanobacterial genus Microcystis. Fish. Sci., 64, 840-841.
Keywords: Microcystis; 16S rDNA; PCR
Strain(s): 107112 
DOI: 10.2331/fishsci.64.840
Kondo, R., Yoshida, T., Yuki, Y., Hiroishi, S. 2000 DNA-DNA reassociation among a bloom-forming cyanobacterial genus, Microcystis. Int. J. Syst. Evol. Microbiol., 50, 767-770.
Keywords: DNA hybridization; DNA G+C content; cyanobacteria; Microcystis
Strain(s): 878998102104111112298604 
PubMed: 10758887
DOI: 10.1099/00207713-50-2-767
Kondo, S., Hori, K., Sasaki-Sekimoto, Y., Kobayashi, A., Kato, T., Yuno-Ohta, N., Nobusawa, T., Ohtaka, K., Shimojima, M., Ohta, H. 2016 Primitive extracellularlipid components on the surface of the charophytic alga Klebsormidium flaccidum and their possible biosynthetic pathways as deduced from the genome sequence. Front. Plant Sci., 7, 952 (article ID).
Keywords: Klebsormidium flaccidum; Chlamydomonas reinhardtii; Arabidopsis thaliana; extracellular lipids; polyester backbone; wax; cuticle
Strain(s): 2285 
PubMed: 27446179
DOI: 10.3389/fpls.2016.00952
Kong, F., Yamasaki, T., Kurniasih, S. D., Hou, L., Li, X., Ivanova, N., Okada, S., Ohama, T. 2015 Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains. Biotech. Bioeng., 120, 239-245.
Keywords: Transgene silencing; Position effect; Squalene synthase-like gene; Botryococcus braunii; Methyltransferase gene
Strain(s): 2235 
PubMed: 25660568
DOI: 10.1016/j.jbiosc.2015.01.005
Konno, R. & Wakabayashi, A. 1987 Effects of chemical substance on the growth of algae [Sôrui no zôsyoku ni oyobosu kagakubusshitsu no eikyô]. Tokyo-to Kankyô Kagaku Kenkyûjo Nenpô. 1987, 4 pp. (in Japanese).
Strain(s): 35 
Kooistra, W. H. C. F., Sarno, D., Balzano, S., Gu, H., Andersen, R. A., Zingone, A. 2008 Global diversity and biogeography of Skeletonema species (Bacillariophyta). Protist, 159, 177-193.
Keywords: biogeography; cryptic species; distribution; LSU rDNA; phytoplankton; Skeletonema costatum
Strain(s): 1617223323324 
PubMed: 18042429
DOI: 10.1016/j.protis.2007.09.004
Kookal, S. K., Nawkarkar, P., Gaur, N. A., Kumar, S. 2022 Bioremediation of ethanol wash by microalgae and generation of bioenergy feedstock. J. Appl. Phycol., 35, 183–194.
Keywords: Biomass; Bioremediation; Melanoidin; Spent Wash; Ethanol distillery wastewater; Bioenergy; Circular Bioeconomy
Strain(s): 2170 
DOI: 10.1007/s10811-022-02866-0
Koskenniemi, K., Lyra, C., Rajaniemi-Wacklin, P., Jokela, J., Sivonen, K. 2007 Quantitative real-time PCR detection of toxic Nodularia cyanobacteria in the Baltic Sea. Appl. Environ. Microbiol., 73, 2173-2179.
Strain(s): 8189102 
PubMed: 17277219
DOI: 10.1128/AEM.02746-06
Kotzabasis, K., Schuering, M., Senger, H. 1989 Occurrence of protochlorophyll and its phototransformation to chlorophyll in mutant C-2A' of Scenedesmus obliquus. Physiol. Plant., 75, 221-226.
Keywords: green algae; phototransformation; protochlorophyllide; protochlorophyllide reductase; Scenedesmus obliquus
Strain(s): 2280 
DOI: 10.1111/j.1399-3054.1989.tb06172.x
Koumura, Y., Suzuki, T., Yoshikawa, S., Watanabe, M., Iseki, M. 2004 The origin of photoactivated adenylyl cyclase (PAC), the Euglena blue-light receptor: phylogenetic analysis of orthologues of PAC subunits from several euglenoids and trypanosome-type adenylyl cyclases from Euglena gracilis. Photochem. Photobiol. Sci., 3, 580-586.
Strain(s): 48381 
PubMed: 5170488
DOI: 10.1039/b316075k
Krausfeldt, L. E., Farmer, A. T., Castro, H. F., Boyer, G. L., Campagna, S. R., Wilhelm, S. W. 2020 Nitrogen flux into metabolites and microcystins changes in response to different nitrogen sources in Microcystis aeruginosa NIES‐843. Environ. Microbiol., 22, 2419-2431.
Strain(s): 843 
PubMed: 32338427
DOI: 10.1111/1462-2920.15032
Krienitz, L., Bock, C., Nozaki, H., Wolf, M. 2011 SSU rRNA gene phylogeny of morphospecies affiliated to the bioassay alga "Selenastrum capricornutum" recovered the polyphyletic origin of crescent-shaped Chlorophyta. J. Phycol., 47, 880-893.
Keywords: Kirchneriella; Neocystis mucosa sp. nov..; Nephrochlamys; Raphidocelis; Rhombocystis; Selenastrum; SSU rRNA gene phylogeny; taxonomy; Tetranephris; ultrastructure
Strain(s): 2708270927102711271227132714 
PubMed: 27020023
DOI: 10.1111/j.1529-8817.2011.01010.x
Krivina, E. S. & Temraleeva, A. D. 2020 Identification problems and cryptic diversity of Chlorella-clade microalgae (Chlorophyta). Microbiology, 89, 720-732.
Keywords: microalgae; morphology; ecology; phylogeny; 18S−ITS1−5.8S−ITS2 fragments; polyphasic approach
Strain(s): 2167217340324034 
DOI: 10.1134/S0026261720060107
Krupnik, T., Kotabová, E., van Bezouwen, L. S., Mazur, R., Garstka, M., Nixon, P. J., Barber, J., Kaňa, R., Boekema, E. J., Kargul, J. 2013 A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae. J. Biol. Chem., 288, 23529-23542.
Strain(s): 1332 
DOI: 10.1074/jbc.M113.484659
Krupnik, T., Wasilewska, W., Drożak, A., Romanowska, E., Zienkiewicz, M. 2018 Application of chloroplast promoters of Cyanidioschyzon merolae for exogenous protein expression. Algae, 33, 351-358.
Keywords: chloroplast promoters; chloroplast transformation; Cyanidioschyzon merolae
Strain(s): 1332 
DOI: 10.4490/algae.2018.33.12.5
Kuang, X., Peng, L., Chen, A., Xeng, Q., Luo, S., Shao, J. 2019 Enhancement mechanisms of copper(II) adsorption onto kaolinite by extracellular polymeric substances of Microcystis aeruginosa (cyanobacterium). Int. Biodeterior. Biodegrad., 138, 8-14.
Keywords: Microcystis aeruginosa; Extracellular polymeric substances; Copper(II); Adsorption kinetics; Adsorption isotherm
Strain(s): 843 
DOI: 10.1016/j.ibiod.2018.12.009
Kubo, T., Abe, J.,  Saito, T., Matsuda, Y. 2002 Genealogical relationships among laboratory strains of Chlamydomonas reinhardtii as inferred from matrix metalloprotease genes. Curr. Genet., 41, 115-122.
Keywords: Chlamydomonas reinhardtii; Chlamydomonas smithii; matrix metalloprotease genes; molecular phylogeny
Strain(s): 2235 
PubMed: 12073093
DOI: 10.1007/s00294-002-0284-0
Kubo, T., Kato, N., Hosoya, K., Kaya, K. 2008 Effective determination method for a cyanobacterial neurotoxin, β-N-methylamino-L-alanine. Toxicon, 51, 1264-1268.
Keywords: Cyanobacteria; Neurotoxin; BMAA; LC–ESI-MS; HILIC; SIM
Strain(s): 88 
PubMed: 18407310
DOI: 10.1016/j.toxicon.2008.02.015
Kubo, T., Saito, T., Fukuzawa, H., Matsuda, Y. 2001 Two tandemly-located matrix metalloprotease genes with different expression patterns in the Chlamydomonas sexual cell cycle. Curr. Genet., 40, 136-143.
Keywords: cell wall degradation; Chlamydomonas reinhardtii; gametolysin; zygote-specific gene
Strain(s): 2235 
PubMed: 11680823
DOI: 10.1007/s002940100239
Kuchitsu, K., Oh-hama, T., Tsuzuki, M., Miyachi, S. 1987 Detection and characterization of acidic compartments (vacuoles) in Chlorella vulgaris 11h cells by 31P-in vivo NMR spectroscopy and cytochemical techniques. Arch. Mikrobiol., 148, 83-87.
Strain(s): 2160 
Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Changes of starch localization within the chloroplast induced by changes in CO2 concentration during growth of Chlamydomonas reinhardtii. Independent regulation of pyrenoid starch and stroma starch. Plant Cell Physiol., 29, 1269-1278.
Keywords: Chlamydomonas (Chlorophyta); chloroplast; CO2 concentration; pyrenoid; starch; stroma
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077635
Kuchitsu, K., Tsuzuki, M., Miyachi, S. 1988 Characterization of the pyrenoid isolated from unicellular green alga Chlamydomonas reinhardtii. Particulate form of RuBisCO protein. Protoplasma, 144, 17-24.
Keywords: Chlamydomonas; pyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO); stroma
Strain(s): 2235 
DOI: 10.1007/BF01320276
Kumagai, M., Takamura, Y., Yagi, O., Sudo, R. 1986 Interactions between Microcystis aeruginosa and Moraxella nonliquefaciens. Jpn. J. Limnol., 47, 219-228 (in Japanese with English summary).
Keywords: blue-green algae; Microcystis; interaction
Strain(s): 604 
Kumar, S., Kumar, R., Diksha, Kumari, A., Panwar, A. 2022 Astaxanthin: A super antioxidant from microalgae and its therapeutic potential J. Basic Microbiol., 62, 1064-1082.
Keywords: biological activities; cultivation system, biorefining proces
Strain(s): 144 
PubMed: 34817092
DOI: 10.1002/jobm.202100391
Kumari, S., Kumar, V., Kothari, R., Kumar, P. 2022 Experimental and optimization studies on phycoremediation of dairy wastewater and biomass production efficiency of Chlorella vulgaris isolated from Ganga River, Haridwar, India. Environ. Sci. Pollut. Res., 29, 74643–74654.
Keywords: Bioremediation; Environmental restoration; Freshwater algae; Industrial pollution; Response surface methodology; Wastewater treatment
Strain(s): 227 
PubMed: 35639322
DOI: 10.1007/s11356-022-21069-1
Kumazaki, S., Akari, M., Hasegawa, M. 2013 Transformation of thylakoid membranes during differentiation from vegetative cell into heterocyst visualized by microscopic spectral imaging. Plant Physiol., 161, 1321-1333.
Strain(s): 2095 
PubMed: 23274239
DOI: 10.1104/pp.112.206680
Kume, N. & Katoh, T. 1982 Dissociation kinetics of Anabaena phycobilisomes. Plant Cell Physiol., 23, 803-812.
Keywords: Anabaena variabilis; blue-green alga; dissociation kinetics; molecular assembly; phycobiliprotein; phycobilisome
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076414
Kume, N., Isono, T., Katoh, T. 1982 Stability of cyanobacterial phycobilisomes in reference to their concentration. Photobiochem. Photobiophys., 4, 25-37.
Strain(s): 2093 
Zzzbe 2022 Chapter 2 - Specialized metabolites from cyanobacteria and their biological activities. In The Pharmacological Potential of Cyanobacteria, Eds. by Lopes, G., Silva, M., Vasconcelos, V., Academic press pp. 21-54.
Keywords: Kumla, D., Sousa, M. E., Vasconcelos, V., Kijjoa, A.
Strain(s): 88 
DOI: 10.1016/B978-0-12-821491-6.00002-8
Kuno, S., Yoshida, T., Kamikawa, R., Hosoda, N., Sako, Y. 2010 The distribution of a phage-related insertion sequence element in the cyanobacterium, Microcystis aeruginosa. Microbes Environ., 25, 295-301.
Keywords: cyanobacteria; Microcystis; cyanophage; insertion sequence; horizontal gene transfer
Strain(s): 90919899101102112298604843105810671070108610981105 
DOI: 10.1264/jsme2.ME10125
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol., 78, 5353-5360.
Strain(s): 87102298 
PubMed: 22636003
DOI: 10.1128/AEM.00626-12
Kunugi, M., Matsumoto, M., Kondo, K. 2010 Effect of culture conditions on production of useful materials by Haematococcus pluvialis. Bull. Soc. Sea Water Sci., Jpn, 64, 297-304 (in Japanese with English summary).
Keywords: biomass; microalgae; carbon dioxide; useful material production
Strain(s): 144 
Kunugi, M., Satoh. S., Ihara. K., Shibata. K., Yamagishi. Y., Kogame. K., Obokata. J., Takabayashi. A., Tanaka. A. 2016 Evolution of green plants accompanied changes in light-harvesting systems. Plant Cell Physiol., 57, 1231-1243.
Keywords: Evolution; Green algae; Land plants; Light adaptation; Photosystem
Strain(s): 254141925412582 
PubMed: 27057002
DOI: 10.1093/pcp/pcw071
Kuramoto, T., Iwamoto, K., Izumi, M., Kirihata, M., Yoshizako, F. 1999 Asymmetric reduction of ethyl 2-methyl 3-oxobutanoate by Chlorella. Biosci. Biotechnol. Biochem., 63, 598-601.
Keywords: Chlorella; asymmetric reduction; ethyl 2-methyl 3-oxobutanoate; (2S, 3S)-ethyl 2-methyl 3-hydroxybutanoate; (2S, 3R)-ethyl 2-methyl 3-hydroxybutanoate
Strain(s): 226227 
PubMed: 10227152
DOI: 10.1271/bbb.63.598
Kurita, T., Iwai, M., Moroi, K., Okazaki, K., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T. 2022 Genome editing with removable TALEN vectors harboring a yeast centromere and autonomous replication sequence in oleaginous microalga. Sci Rep, 12, 2480 (article ID).
Strain(s): 2145 
PubMed: 35169205
DOI: 10.1038/s41598-022-06495-y
Kurita, T., Moroi, K., Iwai, M., Okazaki, K., Shimizu, S., Nomura, S., Saito, F., Maeda, S., Takami, A., Sakamoto, A., Ohta, H., Sakuma, T., Yamamoto, T. 2020 Efficient and multiplexable genome editing using Platinum TALENs in oleaginous microalga, Nannochloropsis oceanica NIES‐2145. Genes Cells, 25, 695-702.
Strain(s): 2145 
PubMed: 32888368
DOI: 10.1111/gtc.12805
Kuroda, A., Nakashima, T., Yamaguchi, K., Oda, T. 2005 Isolation and characterization of light-dependent hemolytic cytotoxin fromharmful red tide phytoplankton Chattonella marina. Comp. Biochem. Physiol. C-Pharmacol. Toxicol. Endocrinol., 141, 297-305.
Keywords: Red tide; Phytoplankton; Raphidophycean flagellate; Chattonella marina; Hemolysin; Photosensitizer; Pheophorbide a; Cytotoxin; Photodynamic therapy
Strain(s): 615 
PubMed: 16098818
DOI: 10.1016/j.cca.2005.07.009
Kuroda, M., Horino, T., Inoue, D., Morikawa, M., Ike, M. 2018 Biomass production and nutrient removal through cultivation of Euglena gracilis in domestic wastewater. Jpn. J. Water Treat. Biol., 54, 105-113.
Keywords: Euglena gracilis; biomass production; domestic wastewater; nutrient removal
Strain(s): 48 
DOI: 10.2521/jswtb.54.105
Kuroiwa, T. 1998 The primitive red algae Cyanidium caldarium and Cyanidioschyzon merolae as model system for investigating the dividing apparatus of mitochondria and plastids. Bioessays, 20, 344-354.
Strain(s): 3377 
DOI: 10.1002/(SICI)1521-1878(199804)20:4<344::AID-BIES11>3.0.CO;2-2
Kuroiwa, T., Kuroiwa, H., Sakai, A., Takahashi, H., Toda, K., Itoh, R. 1998 The division apparatus of plastids and mitochondria. Int. Rev. Cytol., 181, 1-41.
Keywords: Cytokinesis; Organellokinesis; Organelle division; Mitochondrial division; Plastid division; FtsZ; Contractile ring; Cell division
Strain(s): 3377 
DOI: 10.1016/S0074-7696(08)60415-5
Kuroiwa, T., Ohnuma, M., Imoto, Y., Misumi, O., Nagata, N., Miyakawa, I., Fujishima, M., Yagisawa, F., Kuroiwa, H. 2016 Genome size of the ultrasmall unicellular freshwater green alga, Medakamo hakoo 311, as determined by staining with 4′,6-diamidino-2-phenylindole after microwave oven treatments: II. Comparison with Cyanidioschyzon merolae, Saccharomyces cerevisiae (n, 2n), and Chlorella variabilis. Cytologia, 81, 69-76.
Keywords: Ultrasmall genome size; Medakamo hakoo; Saccharyomyces cerevisiae; Chlorella variabilis; DAPI staining; Microwave oven
Strain(s): 33774000 
DOI: 10.1508/cytologia.81.69
Kuroiwa, T., Ohnuma, M., Nozaki, H., Imoto, Y., Misumi, O., Kuroiwa, H. 2015 Cytological evidence of cell-nuclear genome size of a new ultra-small unicellular freshwater green alga, “Medakamo hakoo” strain M-hakoo 311 I. Comparison with Cyanidioschyzon merolae and Ostreococcus tauri. Cytologia, 80, 143-150.
Keywords: Ultra-small alga; Chlorophyte M. hakoo; Cyanidioschyzon merolae; Ostreococcus tauri; Genome size; Cytochemistry
Strain(s): 267333774000 
DOI: 10.1508/cytologia.80.143
Kuroiwa, T., Suzuki, T., Ogawa, K., Kawano, S. 1981 The chloroplast nucleus: Distribution, number, size and shape, and a model for the multiplication of the chloroplast genome during chloroplast development. Plant Cell Physiol., 22, 381-396.
Keywords: chloroplast nuclei; classification (chloroplast); development (Chloroplast); division cycle (chloroplast)
Strain(s): 472572 
DOI: 10.1093/oxfordjournals.pcp.a076181
Kuroiwa, Y., Al-Maamari, R. S., Tasaki, M., Okamura, K., Sueyoshi, M., Nakashima, A., Yoshida, E., Suzuki, K. 2014 Spirulina subsalsa var. salina var. nov.: Thermo-halotolerant cyanobacteria accumulating two kinds of compatible solute, originated from the Sultanate of Oman. J. Environ. Biotechnol., 14, 43-56.
Keywords: Spirulina subsalsa var. salina var. nov.; Halospirulina; halotolerant; glycine betamine; O-α-D-glucopyranosyl-(1→2)-glycerole
Strain(s): 3373 
Kushibiki, A., Yokoyama, A., Iwataki, M., Yokoyama, J., West, J. A., Hara, Y. 2012 New unicellular red alga, Bulboplastis apyrenoidosa gen. et sp. nov. (Rhodellophyceae, Rhodophyta) from the mangroves of Japan: Phylogenetic and ultrastructural observations. Phycol. Res., 60, 114-122.
Keywords: Bulboplastis apyrenoidosa; chloroplast; Golgi body; mannitol; nucleus-associated organelles; small subunit rDNA; ultrastructure; unicellular red alga
Strain(s): 2742 
DOI: 10.1111/j.1440-1835.2012.00643.x
Kusui, T., Itatsu, Y., Jin, J. 2017 Whole effluent toxicity assessment of industrial effluents. In Toxicity and biodegradation testing, Eds. by Bidoia, E. D. & Montagnolli, R. N., Humana Press, New York, NY, pp. 331-347.
Strain(s): 35 
DOI: 10.1007/978-1-4939-7425-2_17
Kusumi, T., Ooi, T., Watanabe, M. M. Takahashi, H., Kakisawa, H. 1987 Cyanoviridin RR, a toxin from the cyanobacterium (blue-green alga) Microcystis viridis. Tetrahedron Letters, 28, 4695-4698.
Strain(s): 102 
DOI: 10.1016/S0040-4039(00)96600-0
Kusumi, T., Takata, Y., Itatsu, Y., Zha, J. 2014 Whole effluent toxicity assessment of industrial effluents in Toyama, Japan with a battery of short-term chronic bioassays. J. Water Environ. Technol., 12, 55-63.
Keywords: aqquatic organism; ecotoxic effect; industrial effluent; whole effluent toxicity (WET)
Strain(s): 35 
DOI: 10.2965/jwet.2014.55
Kuwata, A., Saitoh, K., Nakamura, Y., Ishinomiya, M., Sato, N. 2020 Draft whole-genome sequence of Triparma laevis f. inornata (Parmales, Bolidophyceae), isolated from the Oyashio region, Western North Pacific Ocean. Microbiol. Resour. Ann.., 9, e00367-20 (article ID).
Strain(s): 2565 
PubMed: 32817146
DOI: 10.1128/MRA.00367-20
Kuwata, A., Yamada, K., Ichinomiya, M., Yoshikawa, S., Tragin, M., Vaulot, D., Lopes dos Santos, A. 2018 Bolidophyceae, a sister picoplanktonic group of diatoms – a review. Front. Mar. Sci., 5, 370 (article ID).
Keywords: bolidophyceae; parmales; diatoms; genetic diversity; mitosis; geographical distribution; seasonal dynamics and silicification
Strain(s): 25652682336933703371369937003701 
DOI: 10.3389/fmars.2018.00370
Kwak, H. S., Kim, J. Y. H., Sim, S. J. 2015 A microreactor system for cultivation of Haematococcus pluvialis and astaxanthin production. J. Nanosci. Nanotechnol., 15, 1618-1623.
Keywords: Astaxanthin; Haematococcus pluvialis; Microfluidic Devices; Nile Red; PDMS
Strain(s): 144 
PubMed: 26353702
DOI: 10.1166/jnn.2015.9321
Lababpour, A., Hada, K., Shimahara, K., Katsuda, T., Katoh, S. 2004 Effects of nutrient supply methods and illumination with blue light emitting diodes (LEDs) on astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 98, 452-456.
Keywords: astaxanthin; Haematococcus pluvialis; blue light emitting diode (LED); nutrient supply
Strain(s): 144 
PubMed: 16233735
DOI: 10.1016/S1389-1723(05)00311-7
Lababpour, A., Shimahara, K., Hada, K., Kyoui, Y., Katsuda, T., Katoh, S. 2005 Fed-batch culture under illumination with blue light emitting diodes (LEDs) for astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 100, 339-342.
Keywords: astaxanthin; Haematococcus pluvialis; fed-batch culture; blue light emitting diode (LED)
Strain(s): 144 
PubMed: 16243287
DOI: 10.1263/jbb.100.339
Laflamme, M., Lee, R. W. 2003 Mitochondrial genome conformation among CW-group Chlorophycean algae. J. Phycol., 39, 213-220.
Keywords: Chlamydomonas; Chlorophyceae; gel electrophoresis; mitochondrial DNA conformation; phylogeny
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DOI: 10.1046/j.1529-8817.2003.02045.x
Lang, I., Hodac, L., Friedl, T., Feussner, I. 2011 Fatty acid profiles and their distribution patterns in microalgae: a comprehensive analysis of more than 2000 strains from the SAG culture collection. BMC Plant Biol., 11, 124 (article ID).
Keywords: Fatty Acid Profile; Spirulina; Fatty Acid Pattern; Multiple Strain; Canonical Variate Analysis
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PubMed: 21896160
DOI: 10.1186/1471-2229-11-124
Langer, G., Nehrke, G., Probert, I., Ly, J., Ziveri, P. 2009 Strain-specific responses of Emiliania huxleyi to change seawater carbonate chemistry. Biogeosciences, 6, 2637-2646.
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Lapsongpon, T., Leungprasert, S., Yoshimura, C. 2017 Pre-chlorination contact time and the removal and control of Microcystis aeroginosa in coagulation. 7th International Conference on Environment and Industrial Innovation, 012011 (article ID).
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DOI: 10.1088/1755-1315/67/1/012011
Le Gall, F., Rigaut-Jalabert, F., Marie, D., Garczareck, L., Viprey, M., Godet, A., Vaulot, D. 2008 Picoplankton diversity in the South-East Pacific Ocean from cultures. Biogeosciences, 5, 203-214.
Strain(s): 2582 
Le, V. V., Ko, S.-R.; Kang, M., Lee, S.-A., Oh, H.-M., Ahn, C.-Y. 2022 Algicide capacity of Paucibacter aquatile DH15 on Microcystis aeruginosa by attachment and non-attachment effects. Environmental Pollution, 302, 119079 (article ID).
Keywords: Cyanobacterial blooms; Microcystin; Mitigation; Biodegradation; Biological alternative treatment
Strain(s): 843 
PubMed: 35245623
DOI: 10.1016/j.envpol.2022.119079
Leblond, J. D., Hollingsworth, B. E., Ayoub, D., Mckinnon, M. B., Myers, C. S., Busari, T. J., Sabir, K. 2023 Galactolipid composition of the star-shaped dinoflagellate Asterodinium gracile (Kareniaceae): presence of hexadecatetraenoic acid (16:4(n-3))-containing monogalactosyldiacylglycerol as the predominant galactolipid and chemotaxonomic closeness to Karenia mikimotoi as the only other known Kareniacean producer of this fatty acid. Phycol. Res., 71, 135-139.
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Leblond, J. D., Sabir, K., Graeff, J. E. 2022 Galactolipid composition of Gertia stigmatica (Dinophyceae), an atypical member of the Kareniaceae with a peridinincontaining, non-haptophyte-derived plastid. Phycol. Res., 70, 137-141.
Keywords: hloroplast; dinoflagellate; Dinophyceae; Gertia; Kareniaceae; lipid
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DOI: 10.1111/pre.12488
Lebre P. H. & Cowan D. A 2019 Genomics of alkaliphiles. In Alkaliphiles in Biotechnology, Eds. by Mamo G., Mattiasson B., Springer, Cham, pp. 135-155.
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Lebret, K., Tesson, S. V. M., Kritzberg, E. S., Tomas, C., Rengefors, K. 2015 Phylogeography of the freshwater raphidophyte Gonyostomum semen confirms a recent expansion in northern Europe by a single haplotype. J. Phycol., 51, 768-781.
Keywords: Gonyostomum semen; ITS; LSU; phylogeography; raphidophyte SSU
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PubMed: 26986795
DOI: 10.1111/jpy.12317
Lee, A. K., Wei, J. H., Welander, P. V. 2023 De novo cholesterol biosynthesis in bacteria. Nat. Commun., 14, 2904 (article ID).
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PubMed: 37217541
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Lee, C., Ahn, J.-W., Kim, J.-B., Kim, J. Y., Choi, Y.-E. 2018 Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength. World J. Microbiol. Biotechnol., 34, 96 (article ID).
Keywords: Gene expression; Carotenoid biosynthesis; Differentially expressed genes; Microalgae; LED wavelength
Strain(s): 144 
PubMed: 29916185
DOI: 10.1007/s11274-018-2459-y
Lee, C., Jeon, M. S., Vo, T-T., Park, C., Choi, J-S., Kwon, J., Roh, S. W., Choi, Y-E. 2018 Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria. J. Appl. Phycol., 30 1795–1806.
Keywords: Algal bloom; Cyanobacterium; Bacterial isolation; Microcystis; Biological control; Microcystin degradation
Strain(s): 144 
DOI: 10.1007/s10811-018-1403-8
Lee, C., Jeon, M., Kim, J. Y., Lee, S. H., Kim, D. G., Roh, S. W., Choi, Y.-E. 2019 Effects of an auxin-producing symbiotic bacterium on cell growth of themicroalgaHaematococcus pluvialis: Elevation of cell density andprolongation of exponential stage. Algal Res., 41, 101547.
Keywords: Unicellular microalgae; Haematococcus spp.; Symbiotic bacteria; Achromobactersp.; Growth promotion; Auxin
Strain(s): 144 
DOI: 10.1016/j.algal.2019.101547
Lee, H. & Ban, S. 1999 Effect of crowding on growth and reproduction of Simocephalus vetulus O.F.Muller. Hydrobiologia, 391, 135-145.
Keywords: flow-through technique; crowding effect; growth and reproduction; neonate size; reproductive investments; Simocephalus vetulus
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DOI: 10.1023/A:1003529109779
Lee, H.-W., Ban, S., Ando, Y., Ota, T., Ikeda, T. 1999 Deleterious effect of diatom diets on egg production and hatching success in the marine copepod Pseudocalanus newmani. Plankton Biol. Ecol., 46, 104-112.
Keywords: diatom effect; copepod; Pseudocalanus newmani; clutch size; hatching success
Strain(s): 7 
Lee, H-W., Ban, S., Ikeda, T., Matsuishi, T. 2003 Effect of temperature on development, growth and reproduction in the marine copepod Pseudocalanus newmani at satiating food condition. J. Plankton Res., 25, 261-271.
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Lee, J. E., Yu, M. N., Yu, S., Byeon, M. 2022 Occurrence and phylogenetic analysis of Pseudanabaena sp. producing 2-methylisoborneol in drinking water source of South Korea. Environ. Microbiol. Rep., 14, 197-202.
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PubMed: 34837342
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Lee, J.-Y. & Jeong, S.-Y. 2018 Characteristics and effects of algal-lytic bacterium for control of fresh water microalgae. J. Eng. Appl. Sci., 13, 2803-2808.
Keywords: Algal blooms; algal-lytic activity; fresh microalgae; Microcystis aeruginosa; Pseudomonas sp. JS-9; substance
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Lee, K. H., Chun, Y., Lee, J. H., Park, C., Yoo, H. Y., Kwak, H. S. 2022 Improved productivity of astaxanthin from photosensitive Haematococcus pluvialis using phototaxis technology. Mar. Drugs, 20, (article ID).
Keywords: Haematococcus pluvialis; astaxanthin; photosynthetic efficiency; microfluidics; photobioreactor
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PubMed: 35447893
DOI: 10.3390/md20040220
Lee, K.-Y., Park, J.-H., Park, B.-S. 1996 CO2 fixation and SCP production using blue green algae. Theories and Applications of Chem. Eng. (Korea), 2, 489-492 (in Korean with English title).
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Lee, N., Narasimhan, A. L., Moon, G., Kim, Y.-E., Park, M., Kim, B., Mahadi, R., Chung, S., Oh, Y.-K. 2022 Room-temperature cell disruption and astaxanthin recovery from Haematococcus lacustris cysts using ultrathin α-quartz nanoplates and ionic liquids. Appl. Sci.-Basel, 12, 2210 (article ID).
Keywords: microalgae; Haematococcus lacustris; astaxanthin; ionic liquid; nanoplate; cell disruption; room-temperature extraction
Strain(s): 144 
DOI: 10.3390/app12042210
Lee, S, Kato, J, Takiguchi, N. Kuroda, A., Ikeda, T., Mitsutani, A., Ohtake, H. 2000 Involvement of an extracellular protease in algicidal activity of the marine bacterium Pseudoalteromonas sp. strain A28. Appl. Environ. Microbiol., 66, 4334-4339.
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Lee, S., Thio, S. K., Park, S.-Y., Bae, S. 2019 An automated 3D-printed smartphone platform integrated withoptoelectrowetting (OEW) microfluidic chip for on-site monitoring of viablealgae in water. Harmful Algae, 88, 101638 (article ID).
Keywords: Algae quantification; In-situ assessment; Viable algae; 3D-printed smartphone platform; Optoelectorwetting
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PubMed: 31582154
DOI: 10.1016/j.hal.2019.101638
Lee, S.-A., Kim, M., Esterhuizen, M., Le, V. V., Kang, M., o, S.-R., Oh, H.-M., Kim, Y. J., Ahn, C.-Y. 2022 An acceleration of carotenoid production and growth of Haematococcus lacustris induced by host-microbiota network interaction. Microbiol. Res., 262, 127097 (article ID).
Keywords: Haematococcus lacustris; Astaxanthin; NGS; Phycosphere
Strain(s): 144 
PubMed: 35751943
DOI: 10.1016/j.micres.2022.127097
Lee, S.-A., Lim, W.-H., Ko, S.-R., Kim, B., Oh, H.-M., Ahn, C.-Y. 2022 Lifespan extension and anti-oxidant effects of carotenoid pigments in Caenorhabditis elegans. Bioresour. Technol. Reports, 17, 100962 (article ID).
Keywords: Haematococcus lacustris; Carotenoids; Caenorhabditis elegans; Lifespan; Antioxidation
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DOI: 10.1016/j.biteb.2022.100962
Lee, T. Y., Praveenkumar, R., Oh, Y. K. Lee, K., Kim, S. H. 2016 Alginate microgels created by selective coalescence between core drops paired with an ultrathin shell. J. Mater. Chem. B, 4, 3232-3238.
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Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1994 In vivo fluorometric method for early detection of cyanobacterial waterblooms. J. Appl. Phycol., 6, 489-495.
Keywords: cyanobacteria; waterblooms; in vivo fluorescence; monitoring; Microcystis aeruginosa
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Lee, T., Tsuzuki, M., Takeuchi, T., Yokoyama, K., Karube, I. 1995 Quantitative determination of cyanobacteria in mixed phytoplankton assemblages by an in vivo fluorimetric method. Anal. Chim. Acta, 302, 81-87.
Keywords: cyanobacteria; quantitative estimation; phycocyanin; waterblooms; Microcystis aeruginosa
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DOI: 10.1016/0003-2670(94)00425-L
Lee, T.-Y., Gotoh, N., Niki, E., Yokoyama, K., Tsuzuki, M., Takeuchi, T., Karube, I. 1995 Chemilluminescence detection of red tide phytoplankton Chattonella marina. Anal. Chem., 67, 225-228.
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Lee, Y.-K. & Soh, C.-W. 1991 Accumulation of astaxanthin in Haematococcus lacustris (Chlorophyta). J. Phycol., 27, 575-577.
Keywords: astaxanthin; chemostat cultures; chlorophyta; Haematococcus lacustris; photon flux density; specific growth rate
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DOI: 10.1111/j.0022-3646.1991.00575.x
Lee, Y.-K. & Tan, H.-M. 1988 Interphylum protoplast fusion and genetic recombination of the algae Porphyridium cruentum and Dunaliella spp. J. Gen. Microbiol., 134, 635-641.
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Lee, Y.-K., Ahn, C.-Y., Kim, H.-S., Oh, H.-M. 2010 Cyanobactericidal effect of Rhodococcus sp. isolated from eutrophic lake on Microcystis sp. Biotechnol. Lett., 32, 1673-1678.
Keywords: Algicide; Bloom; Cyanobacteria; Microcystis; Rhodococcus
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PubMed: 20640876
DOI: 10.1007/s10529-010-0350-5
Lei, C., Kobayashi, H., Wu, Y., Li, M., Isozaki, A., Yasumoto, A., Mikami, H., Ito, T., Nitta, N., Sugimura, T., Yamada, M., Yatomi, Y., Di Carlo, D., Ozeki, Y., Goda, K. 2018 High-throughput imaging flow cytometry by optofluidic time-stretch microscopy. Nat. Protoc., 13, 1603-1631.
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Leikoski, N., Fewer, D. P., Jokela, J., Alakoski, P., Wahlsten, M., Sivonen, K. 2012 Analysis of an inactive cyanobactin biosynthetic gene cluster leads to discovery of new natural products from strains of the genus Microcystis. PLoS One, 7, e43002 (article ID).
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Lemieux, C., Otis, C., Turmel, M. 2000 Ancestral chloroplast in Mesostigma viride reveals an early branch of green plant evolution. Nature, 403, 649-652.
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Lemieux, C., Otis, C.,Turmel, M. 2014 Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol. Biol., 14, 211 (article ID).
Keywords: Chlorophyta; Trebouxiophyceae; Plastid genome; Phylogenomics
Strain(s): 18242166 
PubMed: 25270575
DOI: 10.1186/s12862-014-0211-2
Lemieux, C., Otis, C.,Turmel, M. 2014 Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species. BMC Evol. Biol., 14, 857 (article ID).
Keywords: Viridiplantae; Prasinophytes; Prasinococcales; Picocystis; Picoplanktonic algae; Nephroselmis; Plastid genome; Phylogenomics; Genome reduction; trans-spliced group II intron
Strain(s): 252 
PubMed: 25281016
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Lemieux, C., Vincent, A. T., Labarre, A., Otis, C., Turmel M. 2015 Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae). BMC Evol. Biol., 15, 264 (article ID).
Keywords: Chlorophyceae; Chlamydomonadales; Golenkiniaceae; Treubarinia, Jenufa genus; Plastid genome; Flagellar apparatus
Strain(s): 257425 
PubMed: 26620802
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Lepere, C., Demura, M., Kawachi, M., Romac, S., Probert, I., Vaulot, D. 2011 Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiol. Ecol., 76, 513-523.
Keywords: whole-genome amplification; photosynthetic; microbial eukaryote; flow cytometry sorting; rRNA genes
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Lerche, K. & Hallmann, A. 2009 Stable nuclear transformation of Gonium pectorale. BMC Biotechnol., 9, 64 (article ID).
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Li, B., Li, J., An, G., Zhao, C., Wang, C. 2021 Long-term and strong suppression against Microcystis growth and microcystin-release by luteolin continuous-release microsphere: Optimal construction, characterization, effects and proteomic mechanisms. Water Res., 202, 117448 (article ID).
Keywords: Continuous-release microsphere; Long-term algicidal effect; Luteolin; Microcystin; Microcystis-dominated cyanobacterial bloom; Proteomic mechanism
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Li, JR., Wu, Y., Qi, YJ. 2014 microRNAs in a multicellular green alga Volvox carteri. Sci. China-Life Sci., 57, 36-45.
Keywords: Volvox; small RNA; microRNA; conservation; evolution
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Li, M., Muñoz, H. E., Goda, K., Di Carlo, D. 2017 Shape-based separation of microalga Euglena gracilis using inertial microfluidics. Sci Rep, 7, 10802 (article ID).
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Li, M., van Zee, M., Goda, K., Di Carlo, D. 2018 Size-based sorting of hydrogel droplets using inertial microfluidics. Lab Chip, 18, 2575-2582.
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PubMed: 30046787
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Li, M., van Zee, M., Riche, C. T., Tofig, B., Gallaher, S. D., Merchant, S. S., Damoiseaux, R., Goda, K., Di Carlo, D. 2018 A gelatin microdroplet platform for high‐throughput sorting of hyperproducing single‐cell‐derived microalgal clones. Small, 14, 1803315 (article ID).
Strain(s): 48 
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Li, R. & Watanabe, M. M. 2004 Fatty acid composition of planktonic species of Anabaena (Cyanobacteria) with coiled trichomes exhibited a significant. Curr. Microbiol., 49, 376-380.
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Li, R., Carmichael, W. W., Pereira, P. 2003 Morphological and 16S rRNA gene evidence for reclassification of the paralytic shellfish toxin producing Aphanizomenon flos-aquae LMECYA 31 as Aphanizomenon issatschenkoi (Cyanophyceae). J. Phycol., 39, 814-818.
Keywords: Ahanizomenon issatschenkoi; cyanotoxin; 16S rDNA; morphology; gene sequences; taxonomy
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Li, R., Carmichael, W. W., Watanabe, M. M. 2000 Taxonomic re-evaluation of Aphanizomenon flos-aquae NH-5 based on morphology and 16S rRNA gene sequences. Hydrobiologia, 438, 99-105.
Keywords: Aphanizomenon; Cyanobacteria; 16S rRNA; morphology; sequences; taxonomy
Strain(s): 1728 
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Li, R., Watanabe, M., Watanabe, M. M. 2000 Taxonomic studies of planktic species of Anabaena based on morphological characteristics in cultured strains. Hydrobiologia, 438, 117-138.
Keywords: Anabaena; cyanobacteria; identification; morphology; planktic; taxonomy
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DOI: 10.1023/A:1004170230774
Li, R., Yokota, A., Sugiyama, J., Watanabe, M., Hiroki, M., Watanabe, M. M. 1998 Chemotaxonomy of planktonic cyanobacteria based on non-polar and 3-hydroxy fatty acid composition. Phycol. Res., 46, 21-28.
Keywords: 3-hydroxy fatty acids; chemotaxonomy; fatty acid; non-polar fatty acids; planktonic cyanobacteria
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DOI: 10.1111/j.1440-1835.1998.tb00093.x
Li, WW., Xia, MS., Li, WB., Liu, LW., Yang, Y., Li, JH. 2018 Characterization of a putative S-layer protein of a colonial Microcystis strain. Curr. Microbiol., 75, 173-178.
Strain(s): 843 
PubMed: 28956106
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Li, Y. & MChen, M. 2021 The specificity of the bilin lyase CpcS for chromophore attachment to allophycocyanin in the chlorophyll f-containing cyanobacterium Halomicronima hongdechloris. Photosynth. Res., 151, 213–223.
Keywords: Allophycocyanin; Bilin lyase; Cyanobacteria; Far-red light photoacclimation; Halomicronema hongdechloris; Photosynthesis
Strain(s): 22267 
PubMed: 34564824
DOI: 10.1007/s11120-021-00878-4
Li, Y., Qin, J. G. 2005 Comparison of growth and lipid content in three Botryococcus braunii strains. J. Appl. Phycol., 17, 551-556.
Keywords: temperature; irradiance; salinity; Botryococcus braunii; hydrocarbon
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Li, Z.-M., Hu, Z., Wang, X., Chen, S., Yu, W., Liu, J., Li, Z 2023 Biochemical and Structural Insights into a Thiamine Diphosphate-Dependent α-Ketoglutarate Decarboxylase from Cyanobacterium Microcystis aeruginosa NIES-843. Int. J. Mol. Sci., 24, 12198 (article ID).
Keywords: α-ketoglutarate decarboxylase; Microcystis aeruginosa; biochemical characterization; structural modeling
Strain(s): 843 
PubMed: 37569577
DOI: 10.3390/ijms241512198
Liang, Z., Geng, Y., Ji, C., Du, H., Wong, C. E., Zhang, Q., Zhang, Y., Zhang, P., Riaz, A., Chachar, S., Ding, Y., Wen, J., Wu, Y., Wang, M., Zheng, H., Wu, Y., Demko, V., Shen, L., Han, X., Zhang, P., Gu, X., Yu, H. 2020 Mesostigma viride genome and transcriptome provide insights into the origin and evolution of Streptophyta. Adv. Sci., 7, 1901850 (article ID).
Keywords: Mesostigma viride; evolution; green algae; multicellularity; Streptophyta
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PubMed: 31921561
DOI: 10.1002/advs.201901850
Lianga, Y., Kaczmarek, M. B., Kasprzak, A. K., Tang, J., Shah, M. M. R., Jin, P., Klepacz-Smółk, A., Cheng, J. J., Ledakowicz, S., Daroch, M. 2018 Thermosynechococcaceae as a source of thermostable C-phycocyanins: properties and molecular insights. Algal Res., 35, 223-235.
Keywords: Cyanobacteria; Phycocyanin; Thermophile; Thermostability; Phycobilisome; Natural pigment
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Lin, S., Wu, Z., Yu, G., Zhu, M., Yu, B., Li, R. 2010 Genetic diversity and molecular phylogeny of Planktothrix (Oscillatoriales, cyanobacteria) strains from China. Harmful Algae, 9, 87-97.
Keywords: diversity; phylogeny; Planktothrix; 16S rRNA; rbcLX; rpoC1; taxonomy; water bloom
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Lin, W., Zhao, D., Luo, J. 2018 Distribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth. J. Appl. Phycol., 30, 839-850.
Keywords: Alkaline; phosphatase; Cyanobacteria; Dissolved organic phosphorus; Distribution
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Lin, Y., Ge, J., Zhang, Y., Ling, H., Yan, X., Ping, W. 2019 Monoraphidium sp. HDMA-20 is a new potential source of α-linolenic acid and eicosatetraenoic acid. Lipids Health Dis., 18, 56 (article ID).
Keywords: PUFA; ALA; ETA; Microalgae; Monoraphidium
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Lindley, M., Gala de Pablo, J., Peterson, W., Isozaki, A., Hiramatsu, K., Goda, K. 2022 High-throughput raman-activated cell sorting in the fingerprint region. Adv. Mater. Technol., 7, 2101567 (article ID).
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DOI: 10.1002/admt.202101567
Lindsey, C. R., Rosenzweing, F., Herron, M. D. 2021 Phylotranscriptomics points to multiple independent origins of multicellularity and cellular differentiation in the volvocine algae. BMC Biol., 19, 182 (article ID).
Keywords: Phylotranscriptomics; Volvocine algae; Green algae; Phylogeny; Multicellularity
Strain(s): 41845645846056456656857265365471771972072573673785185689028633383 
DOI: 10.1101/2021.03.16.435725
Linka, M., Jamai, A., Weber, A. P. M. 2008 Functional characterization of the plastidic phosphate translocator gene family from the thermo-acidophilic red alga Galdieria sulphuraria reveals specific adaptations of primary carbon partitioning in green plants and red algae. Plant Physiol., 148, 1487-1496.
Strain(s): 3638 
PubMed: 18799657
DOI: 10.1104/pp.108.129478
Liu, C. B., Lin, L. P., Su, Y. C. 1996 Utilization of Chlorella vulgaris for uptake of nitrogen, phosphorus and heavy metals. J. Chin. Agr. Chem. Soc., 34, 331-343 (in Chinese with English summary).
Keywords: Chlorella vulgaris; heavy metals; nitrogen; phosphorus
Strain(s): 227 
Liu, J. Y., Jiang, T., Zhang, J. P., Liang, D. C. 1999 Crystal structure of allophycocyanin from red algae Porphyra yezoensis at 2.2-angstrom resolution. J. Biol. Chem., 274, 16945-16952.
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Liu, J., Gerken, H., Li, Y. 2014 Single-tube colony PCR for DNA amplification and transformant screening of oleaginous microalgae. J. Appl. Microbiol., 26, 1719-1726.
Keywords: Biofuels; Colony PCR; High throughput; Microalgae; Single tube; Transformant screening
Strain(s): 144 
DOI: 10.1007/s10811-013-0220-3
Liu, J., Yang, C., Chi, Y., Wu, D., Dai, X., Zhang, X., Igarashi, Y., Luo, F. 2019 Algicidal characterization and mechanism of Bacillus licheniformis Sp34 against Microcystis aeruginosa in Dianchi Lake. J. Basic Microbiol., 59, 1112-1124.
Keywords: Bacillus licheniformis; Microcystis aeruginosa; algicidal bacterium; biocontrol agent; cyanobacterial blooms
Strain(s): 843 
PubMed: 31502316
DOI: 10.1002/jobm.201900112
Liu, J., Zhang, M., Huang, Z., Fang, J., Wang, Z., Zhou, C., Qiu, X. 2023 Diversity, biosynthesis and bioactivity of aeruginosins, a family of cyanobacteria-derived nonribosomal linear tetrapeptides. Mar. Drugs, 21, 217 (article ID).
Keywords: aeruginosins; Choi; biogenesis; structural diversity; nonribosomal polypeptide synthesis; serine protease inhibitory activity
Strain(s): 8998101205298 
PubMed: 37103356
DOI: 10.3390/md21040217
Liu, L., Chen, J., Lim, P-E., Wei, D. 2018 Dual-species cultivation of microalgae and yeast for enhanced biomass and microbial lipid production. J. Appl. Phycol., 30, 2997–3007.
Keywords: Chlorella; Oleaginous yeast; Artificial consortium; Mixed culture; Microbial lipid production
Strain(s): 227 
DOI: 10.1007/s10811-018-1526-y
Liu, S.-L., Chiang, Y.-R., Yoon, H. S., Fu, H.-Y. 2020 Comparative genome analysis reveals Cyanidiococcus gen. nov., a new extremophilic red algal genus sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta). J. Phycol., 56, 1428-1442.
Strain(s): 33774390 
DOI: 10.1111/jpy.13056
Liu, SH., Zhang, PY., Cong, BL., Liu, CL., Lin XZ., Shen, JH., Huang, XH. 2010 Molecular cloning and expression analysis of a cytosolic Hsp70 gene from Antarctic ice algae Chlamydomonas sp. ICE-L. Extremophiles, 14, 329-337.
Keywords: Antarctic ice algae; Chlamydomonas sp. ICE-L; Heat shock protein; Hsp70; Psychrophile; Stress
Strain(s): 843 
DOI: 10.1007%2Fs00792-010-0313-8
Liu, W., Au, D. W.T., Anderson, D. M., Lam, P. K.S., Wu, R. S.S. 2007 Effects of nutrients, salinity, pH and light: dark cycle on the production of reactive oxygen species in the alga Chattonella marina. J. Exp. Mar. Biol. Ecol., 346, 76-86.
Keywords: Chattonella marina; Iron; Nutrient; pH; Physical parameters; Plasma membrane; Reactive oxygen species; Redox
Strain(s): 3 
DOI: 10.1016/j.jembe.2007.03.007
Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2014 Effects of temperature on life history traits of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Limnology, 15, 85-97.
Keywords: Life history traits; Temperature effects; Eodiaptomus japonicus; Copepod dynamics; Individual variability
Strain(s): 2822235 
DOI: 10.1007/s10201-013-0417-9
Liu, X., Beyrend-Dur, D., Dur, G., Ban, S. 2015 Combined effects of temperature and food concentration on growth and reproduction of Eodiaptomus japonicus (Copepoda: Calanoida) from Lake Biwa (Japan). Freshw. Biol., 60, 2003-2018.
Keywords: copepod dynamics; egg production; Eodiaptomus japonicus; individual growth rates; temperature–food effects
Strain(s): 2822235 
DOI: 10.1111/fwb.12626
Liu, X., Fujiwara, M., Kodera, T., Watanabe, K., Akizuki, S., Kishi, M., Koyama, M., Toda, T., Ban, S. 2020 Conditions for continuous cultivation of Chlorella sorokiniana and nutrient removal from anaerobic digestion effluent of aquatic macrophytes. Int. Biodeterior. Biodegrad., 149, 104923 (article ID).
Keywords: Flow-through cultivation; pH-controlled process; Biomass recovery; Green algae; Energy recycling; Wastewater treatment
Strain(s): 2168 
DOI: 10.1016/j.ibiod.2020.104923
Liu, X., Syuhei, B. 2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter. J. Plankton Res., 39, 111-121.
Keywords: temperature acclimatization; metabolic rates; oxygen consumption rates; zooplankton; optical oxygen meter
Strain(s): 2822235 
DOI: 10.1093/plankt/fbw084
Liu, Y. & Wei, D. 2023 Enhancing carbon dioxide fixation and co-production of protein and lutein in oleaginous Coccomyxa subellipsoidea by a stepwise light intensity and nutrients feeding strategy. Bioresour. Technol., 376, 28885 (article ID).
Keywords: Coccomyxa subellipsoidea; CO2 fixation; Protein; Lutein; Stepwise feeding
Strain(s): 2166 
PubMed: 36925078
DOI: 10.1016/j.biortech.2023.128885
Liu, Y., Hao, A., Iseri, Y., Kuba, T., Zhang, A. 2014 A comparison of the mussel Anodonta woodiana's acute physiological responses to different algae diets. JOCET, 2, 126-131.
Keywords: Anodonta woodiana; microcystis aeruginosa; scenedesmus obliquus; scope for growth (SFG)
Strain(s): 902279 
DOI: 10.7763/JOCET.2014.V2.106
Liu, Y., Hao, A., Iseri, Y., Li, C., Zhang, Z., Kuba, T. 2015 Possible survival mechanisms of Sinanodonta woodiana exposed to microcystin. J. JSCE, 3, 259-267.
Keywords: Sinanodonta woodiana; selective feeding mechanism; Microcystis-blooming; detoxification mechanism; scope for growth (SFG)
Strain(s): 902279 
DOI: 10.2208/journalofjsce.3.1_259
Liu, Z., Hou, Y., He, C., Wang, X., Chen, S., Huang, Z., Chen, F. 2020 Enhancement of linoleic acid content stimulates astaxanthin esterification in Coelastrum sp. Bioresour. Technol., 300, 122649 (article ID).
Keywords: Linoleic acid; astaxanthin esterification; Coelastrum sp.; Free astaxanthin; Fatty acid profile
Strain(s): 144 
PubMed: 31896045
DOI: 10.1016/j.biortech.2019.122649
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Keywords: bacteria; colonization; dispersal; disturbance; protists; spatial pattern; variation partitioning
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PubMed: 28138991
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Loganathan, N., Tsai, YC., Mueller-Cajar, O. 2016 Characterization of the heterooligomeric red-type rubisco activase from red algae. Proc. Nati. Acad. Sci. U. S. A., 113, 14019-14024.
Keywords: rubisco; activase; photosynthesis; AAA+ proteins; red algae
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PubMed: 27872295
DOI: 10.1073/pnas.1610758113
Logares, R., Shalchian-Tabrizi, K., Boltovskoy, A., Rengefors, K. 2007 Extensive dinoflagellate phylogenies indicate infrequent marine–freshwater transitions. Mol. Phylogenet. Evol., 45, 887-903.
Keywords: Dinoflagellates; Freshwater; Colonization; Phylogeny
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PubMed: 17928239
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Lopes dos Santos, A., Gourvil, P., Tragin, M., Noël, M.-H., Decelle, J., Romac, S., Vaulot, D. 2016 Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. ISME J., 11, 512-528.
Strain(s): 275527562758366836693670367138353849 
PubMed: 27779617
DOI: 10.1038/ismej.2016.120
Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., Rodríguez, F., Noël, M.-H., Vaulot, D., Eikrem, W. 2017 Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Sci Rep, 7, 14019 (article ID).
Strain(s): 2755275627583667366836693670367138353849 
PubMed: 10.3775/jie.96.352
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Lu, J. & Takeuchi, T. 2004 Spawning and egg quality of the tilapia Oreochromis niloticus fed solely on raw Spirulina throughout three generations. Aquaculture, 234, 625-640.
Keywords: Closed ecological recirculating aquaculture system (CERAS); egg quality; larval quality; Oreochromis niloticus; parent; progeny; reproduction; spawn; Spirulina platensis
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2003.12.027
Lu, J., Satoh, H., Takeuchi, T. 2008 Development of models of threshold and efficient algal densities for larval and juvenile tilapia Oreochromis niloticus on raw Spirulina. Aquaculture, 285, 249-254.
Keywords: assimilation; 14C labeling; CERAS (closed ecological recirculating aquaculture system); density; ingestion; Spirulina; Oreochromis niloticus
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2008.08.039
Lu, J., Takeuchi, T., Satoh, H. 2004 Ingestion and assimilation of three species of freshwater algae by larval tilapia Oreochromis niloticus. Aquaculture, 238, 437-449.
Keywords: carbon assimilation; closed ecological recirculating aquaculture system (CERAS); Chlorella; 14C labeling; Euglena; ingestion; Oreochromis niloticus; Spirulina
Strain(s): 3948641 
DOI: 10.1016/j.aquaculture.2004.05.002
Lu, J., Takeuchi, T., Satoh, H. 2006 Ingestion, assimilation and utilization of raw Spirulina by larval tilapia Oreochromis niloticus during larval development. Aquaculture, 254, 686-692.
Keywords: assimilation; 14C labeling; CERAS (closed ecological recirculating aquaculture system); ingestion; Spirulina; Oreochromis niloticus
Strain(s): 39 
DOI: 10.1016/j.aquaculture.2005.11.002
Lu, Y., Zhuo, C., Li, Y., Li, H., Yang, M., Xu, D., He, H. 2020 Evaluation of filamentous heterocystous cyanobacteria for integrated pig-farm biogas slurry treatment and bioenergy production. Bioresour. Technol., 297, 122418 (article ID).
Keywords: Pig farm; Biogas slurry; Filamentous cyanobacteria; Wastewater treatment; Bioenergy
Strain(s): 3756 
PubMed: 31761632
DOI: 10.1016/j.biortech.2019.122418
Lu, Z., Dai, J., Zheng, L., Teng, Z., Zhang, Q., Qiu, D., Song, L. 2020 Disodium 2-oxoglutarate promotes carbon flux into astaxanthin and fatty acid biosynthesis pathways in Haematococcus. Bioresour. Technol., 299, 122612 (article ID).
Keywords: Haematococcus pluvialis; Disodium 2-oxoglutarate; Astaxanthin production; Fatty acids biosynthesis; Carbon allocation
Strain(s): 144 
PubMed: 31874452
DOI: 10.1016/j.biortech.2019.122612
Lu, Z., Zheng, L., Liu, J., Dai, J., Song, L. 2019 A novel fed-batch strategy to boost cyst cells production based on the understanding of intracellular carbon and nitrogen metabolism in Haematococcus pluvialis. Bioresour Technol., 289, 121744 (article ID).
Keywords: Haematococcus pluvialis; C/N metabolism; Astaxanthin biosynthesis; Series-gradient-fed strategy; Hyper-production
Strain(s): 144 
PubMed: 31323718
DOI: 10.1016/j.biortech.2019.121744
Lucksch, I.. 1932 Ernährungsphysiologische Untersuchungen an Chlamydomonadeen. Beih. Bot. Centralbl., 50, 64-94.
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Ludewig-Klingner, A. K., Michael, V., Jarek, M., Brinkmann, H., Petersen, J. 2018 Distribution and evolution of peroxisomes in alveolates (Apicomplexa, Dinoflagellates, Ciliates). Genome Biol. Evol., 10, 1-13.
Keywords: Vitrella brassicaformis; Toxoplasma gondii; glyoxylate cycle; diagnostic peroxins; catalase; phylogeny
Strain(s): 4391 
PubMed: 29202176
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Luo, W., Kotut, K., Krienits, L. 2013 Hidden diversity of eukaryotic plankton in the soda lake Nakuru, Kenya, during a phase of low salinity revealed by a SSU rRNA gene clone library. Hydrobiologia, 702, 95-103.
Keywords: Chlorophyta; clone library; lake Nakuru; lesser flamingo; phytoflagellates; Soda lakes; SSU rRNA
Strain(s): 4461360 
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Luu, P. T., Son, D. T., Utsumi, M. 2016 Accumulation and elimination of Microcystins in freshwater clam Corbicula leana under laboratory conditions, assessment of risks to humans. J. Biotechnol., 14, 1-10.
Keywords: alga; heterokontophyte; hexa-amine; labyrinthulomycete; methylated polyamine; penta-amine
Strain(s): 1018001086 
Lv, X., Cheng, Y., Zhang, S., Hu, Z., Xiao, P., Zhang, H., Geng, R., Renhui, L. 2022 Polyphasic characterization and taxonomic evaluation of a bloom-forming strain morphologically Rresembling Radiocystis fernandoi (Chroococcales, Cyanobacteria) from Lake Erhai, China. Diversity-Basel, 14, 816 (article ID).
Keywords: bloom; Microcystis; phylogeny; polyphasic approach; Radiocystis fernandoi; taxonomy
Strain(s): 102103111 
DOI: 10.3390/d14100816
Lyra, C., Suomalainen, S., Gugger, M., Vezie, C., Sundman, P., Paulin, L., Sivonen, K. 2001 Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int. J. Syst. Evol. Microbiol., 51, 13-526.
Keywords: cyanobacteria; 16S rRNA gene; RFLP; sequencing; REP; ERIC
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DOI: 10.1099/00207713-51-2-513
Lysgaard, M. L., Eckford-Soper, L., Daugbjerg, N. 2018 Growth rates of three geographically separated strains of the ichthyotoxic Prymnesium parvum (Prymnesiophyceae) in response to six different pH levels. Estuar. Coast. Shelf Sci., 204, 98-102.
Keywords: Prymnesium parvum; pH response; Growth rate; Phenotypic plasticity; pH acclimation; Harmful algae
Strain(s): 1017 
DOI: 10.1016/j.ecss.2018.02.030
Lyu, Y., Richlen, M, L. Sehein, T. R, Chinain, M., Adachi, M., Nishimura, T., Xu, Y., Parsons, M. L., Smith, T. B., Zheng, T., Anderson, D. M. 2017 LSU rDNA based RFLP assays for the routine identification of Gambierdiscus species. Harmful Algae, 66, 20-28.
Keywords: Gambierdiscus; Ciguatera; RFLP; LSU rDNA
Strain(s): 4119 
PubMed: 28602250
DOI: 10.1016/j.hal.2017.04.009
Ma, H., Zheng, J., Li, Y., Zhao, L., Zou, S., Hu, Q., Ha,n D. 2023 A novel bifunctional wax ester synthase involved in early triacylglycerol accumulation in unicellular green microalga Haematococcus pluvialis under high light stress. Front. Bioeng. Biotechnol., 9, 794714 (article ID).
Keywords: triacylglycerol; wax synthase; microalgae; bifunctional; Haematococcus pluvialis; biotechnological application
Strain(s): 144 
PubMed: 35111735
DOI: 10.3389/fbioe.2021.794714
Ma, M., Zhu, W., Wang, Z., Witkamp, G. J. 2003 Accumulation, assimilation and growth inhibition of copper on freshwater alga (Scenedesmus subspicatus 86.81 SAG) in the presence of EDTA and fulvic acid. Aquat. Toxicol., 63, 221-228.
Keywords: Copper; Toxicity; Alga; FIAM; BLM
Strain(s): 4282 
PubMed: 12711412
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MacCready, J. S., Basalla, J. L., Vecchiarelli, A. G. 2020 Origin and evolution of carboxysome positioning systems in cyanobacteria. Mol. Biol. Evol., 37, 1434–1451.
Strain(s): 212225263039447387882675928068439329702098210021072108211125493275375437563974407340744075410141034106 
PubMed: 31899489
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MacKenzie, L. A., Smith, K. F., Rhodes, L. L., Brown, A., Langi, V., Edgar, M., Lovell, G., Preece, M. 2011 Mortalities of sea-cage salmon (Oncorhynchus tshawytscha) due to a bloom of Pseudochattonella verruculosa (Dictyochophyceae) in Queen Charlotte Sound, New Zealand. Harmful Algae, 11, 45-53.
Keywords: Pseudochattonella verruculosa; Dictyochophyceae; salmon kill; Queen Charlotte Sound; New Zealand
Strain(s): 1603 
DOI: 10.1016/j.hal.2011.07.003
Maeda, I., Kudou, S., Iwai, S. 2021 Efficient isolation and cultivation of endosymbiotic Chlorella from Paramecium bursaria on agar plates by co-culture with yeast cells. J. Microbiol. Methods, 186, 106254 (article ID).
Strain(s): 227 
PubMed: 34052226
DOI: 10.1016/j.mimet.2021.106254
Magalhães, B. D., Matricon, L., Romero, L. A. R., Checa, R., Lorentz, C., Chambonniere, P., Delrue, F., Roubaud, A., Afanasiev, P., Laurenti, D., Geantet, C. 2023 Catalytic hydrotreatment of bio-oil from continuous HTL of Chlorella sorokiniana and Chlorella vulgaris microalgae for biofuel production. Biomass Bioenerg., 173, 106798 (article ID).
Strain(s): 2272273 
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Magonono, M., Oberholster, P. J., Addmore, S., Stanley, M., Gumbo, J. R. 2018 The presence of toxic and non-toxic Cyanobacteria in the sediments of the Limpopo River Basin: Implications for human health. Toxins, 10, 269 (article ID).
Keywords: cyanobacteria; cyanotoxins; nutrient enrichment; akinetes; harmful algal blooms; PCR; phylogenetic analyses
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PubMed: 29970791
DOI: 10.3390/toxins10070269
Mahadi, R., Vahisan, L. P. S., Ilhamsyah, D. P. A., Kim, S., Kim, B., Lee, N., Oh, Y.-K. 2022 Enhancement of astaxanthin and fatty acid production in Haematococcus pluvialis using strigolactone. Appl. Sci.-Basel, 12, 1791 (article ID).
Keywords: strigolactone; Haematococcus pluvialis; astaxanthin; fatty acid; phytohormone; rac-GR24
Strain(s): 144 
DOI: 10.3390/app12041791
Mai, J. C., Coleman, A. W. 1997 The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J. Mol. Evol., 44, 258-271.
Keywords: Angiosperms; Chlamydomonas; Ribosomal RNA; RNA secondary structure; Transcribed spacer
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PubMed: 9060392
DOI: 10.1007/pl00006143
Maki, T. & Imai, I. 2001 Effects of harmful dinoflagellate Heterocapsa circularisquama cells on the growth of intracellular bacteria. Microbes Environ., 16, 234-239.
Keywords: dinoflagellate; red tide; Heterocapsa circularisquama; intracellular bacteria; growth
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Makino, T., Harada, H., Ikenaga, H., Matsuda, S., Takaichi, S., Shindo, K., Sandmann, G., Ogata, T., Misawa, N. 2008 Characterization of cyanobacterial carotenoid ketolase CrtW and hydroxylase CrtR by complementation analysis in Escherichia coli. Plant Cell Physiol., 49, 1867-1878.
Keywords: Anabaena sp. PCC 7120; β-carotene; carotenoid; CrtR; CrtW; Nostoc punctiforme
Strain(s): 2095 
PubMed: 18987067
DOI: 10.1093/pcp/pcn169
Makino, T., Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Nozaki, H. 2019 Taxonomic re-examination of two NIES strains of “Chlamydomonas” within the Reticulata group of the genus Chloromonas (Volvocales, Chlorophyceae). Microb. Resour. Syst., 35, 13-23.
Keywords: Chlamydomonas gerloffii; Chlamydomonas subangulosa; Chloromonas difformis nom. nov.; Chloromonas typhlos; molecular phylogeny; morphology; taxonomy
Strain(s): 22152243 
Makino, W. & Ban, S. 2000 Response of life history traits to food conditions in a cyclopoid copepod from an oligotrophic environment. Limnol. Oceanogr., 45, 396-407.
Strain(s): 282 
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Makino, W. & Ban, S. 2003 Fecal pellet production between molts in a cyclopoid copopod: patterns, individual variability and implications for growth and development. Hydrobiologia, 501, 101-107.
Keywords: Cyclops; molt; fecal pellet; variations; growth and development
Strain(s): 282 
DOI: 10.1023/A:1026211520190
Makita, Y., et al. 2021 Identification of a dual orange/far-red and blue light photoreceptor from an oceanic green picoplankton. Nat. Commun., 12, 3593 (article ID).
Strain(s): 2893 
PubMed: 34135337
DOI: 10.1038/s41467-021-23741-5
Makiuchi, T., Nara, T., Annoura, T., Hashimoto, T., Aoki, T. 2007 Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups. Gene, 394(1-2), 78-86.
Keywords: gene fusion; de novo pyrimidine biosynthesis; lateral gene transfer; evolutionary marker
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DOI: 10.1016/j.gene.2007.02.009
Malone, C. F. S., Genuário, D. B., Vaz, M. G. M. V., Fiore, M. F., Sant’Anna, C. L. 2021 Monilinema gen. nov., a homocytous genus (Cyanobacteria, Leptolyngbyaceae) from saline‐alkaline lakes of Pantanal wetlands, Brazil. J. Phycol., 57, 473-483.
Strain(s): 3755 
PubMed: 33211341
DOI: 10.1111/jpy.13106
Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2019 Fatty acid content and profile of the novel strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) cultivated at reduced nitrogen and phosphorusconcentrations. J. Phycol., 55, 1154-1165.
Keywords: Coccomyxa; fatty acid profile lipid; nitrogen and phosphorus deprivation; Trebouxiophyceae
Strain(s): 216622522353 
PubMed: 31318981
DOI: 10.1111/jpy.12903
Maltsev, Y., Maltseva, I., Maltseva, S., Kociolek, J. P., Kulikovskiy, M. 2021 A new species of freshwater algae Nephrochlamys yushanlensis sp. nov. (Selenastraceae, Sphaeropleales) and its lipid accumulation during nitrogen and phosphorus starvation. J. Phycol., 57, 606-618.
Strain(s): 2166 
PubMed: 33296071
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Maltsev, Y., Maltseva, K., Kulikovskiy, M., Maltseva, S. 2021 Influence of light conditions on microalgae growth and content of lipids, carotenoids, and fatty acid composition. Biology-Basel, 10, 1060 (article ID).
Keywords: carotenoids; fatty acids; light; lipids; microalgae; photoperiod
Strain(s): 21512152215921692170 
PubMed: 34681157
DOI: 10.3390/biology10101060
Man-Aharonovich, D., Philosof, A., Kirkup, B. C., Le Gall, F., Yogev, T., Berman-Frank, I., Polz, M. F., Vaulot, D., Béjà, O. 2010 Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts. ISME J., 4, 1044-1052.
Keywords: picoeukaryotes; PPEs; psbA; transcripts; Mediterranean Sea; diversity
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PubMed: 20237514
DOI: 10.1038/ismej.2010.25
Manali, K. M., Arunraj, R., Ramakrishnan, G. S., Ramya, M. 2019 Development of sensitive and specific multiplex PCR method for the detection of microcystin producing cyanobacteria in spirulina food supplements. Food Sci. Biotechnol., 28, 609-614.
Keywords: Spirulina food supplement; Multiplex PCR; Microcystin; Arthrospira platensis; Cyanotoxin
Strain(s): 843 
PubMed: 30956874
DOI: 10.1007/s10068-018-0476-0
Manali, KM., Arunraj, R., Kumar, T., Ramya, M. 2017 Detection of microcystin producing cyanobacteria in Spirulina dietary supplements using multiplex HRM quantitative PCR. J. Appl. Phycol., 29, 1279-1286.
Keywords: Microcystin; Arthrospira platensis; Multiplex HRM qPCR; Dietary supplements; Liquid; chromatography–high-resolution mass spectrometr
Strain(s): 843 
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Mano, H., Okamoto, S. 2016 Preliminary ecological risk assessment of 10 PPCPs and their contributions to the toxicity of concentrated surface water on an algal species in the middle basin of Tama River. J. Water Environ. Technol., 14, 423-436.
Keywords: bioassay; environmental risk; hazard quotien
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DOI: 10.2965/jwet.15-045
Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Suzuki, Y., Park, CB., Yasui, N., Kobayashi, K., Tanaka, Y., Yamashita, N., Minamiyama, M. 2017 Water quality comparison of secondary effluent and reclaimed water to ambient river water of southern Okinawa Island via biological evaluation. Environ. Monit. Assess., 189, 442 (article ID).
Keywords: Bioassay; Ecological risk; Feasibility study; Water reclamation; Water reuse
Strain(s): 35 
PubMed: 28791526
DOI: 10.1007/s10661-017-6160-7
Mao, F., He, Y., Gin, K. Y. 2020 Antioxidant responses in cyanobacterium Microcystis aeruginosa caused by two commonly used UV filters, benzophenone-1 and benzophenone-3, at environmentally relevant concentrations. J. Hazard. Mater., 396, 122587 (article ID).
Keywords: Benzophenone-1; Benzophenone-3; Cyanobacteria; Oxidative stress
Strain(s): 843 
PubMed: 32335379
DOI: 10.1016/j.jhazmat.2020.122587
Mao, F., He, Y., Gin, KY. 2018 Evaluating the joint toxicity of two benzophenone-type UV filters on the Ggreen alga Chlamydomonas reinhardtii with response surface methodology. Toxics, 6, 8 (article ID).
Keywords: Chlamydomonas reinhardtii; benzophenone-1; benzophenone-3; joint toxicity; response surface methodology
Strain(s): 2463 
PubMed: 29320457
DOI: 10.3390/toxics6010008
Mao, F., He, Y., Kushmaro, A., Gin, KY. 2017 Effects of benzophenone-3 on the green alga Chlamydomonas reinhardtii and the cyanobacterium Microcystis aeruginosa. Aquat. Toxicol., 193, 1-8.
Keywords: Benzophenone-3; Toxicity; Green algae; Cyanobacteria; Photosynthesis; Uptake
Strain(s): 8432463 
PubMed: 28992446
DOI: 10.1016/j.aquatox.2017.09.029
Mao, J. F., Li, W., Liu, X., He, Y., Gin, K. Y.-H. 2023 Responses of cyanobacterium Microcystis aeruginosa under single and repeated ofloxacin exposure. Ecotox. Environ. Safe., 253, 114668 (article ID).
Keywords: Ofloxacin; Toxicity; Flow cytometry; Microcystis aeruginosa; Repeated exposure
Strain(s): 843 
PubMed: 36812870
DOI: 10.1016/j.ecoenv.2023.114668
Marie, D., Le Gall, F., Edern, R., Gourvil, P., Vaulot, D. 2017 Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. J. Phycol., 53, 271-282.
Keywords: antibiotics; BSA; flow cytometry; microalgal; cultures; nanoeukaryotes; phytoplankton; picoeukaryotes;; single cell sorting
Strain(s): 2672 
PubMed: 27878810
DOI: 10.1111/jpy.12495
Marin, B. 2012 Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist, 163, 778-805.
Keywords: Marsupiomonadales; Marsupiomonas; Pedinomonas; Pedinophyceae; Resultor; Resultomonas
Strain(s): 252483 
PubMed: 22192529
DOI: 10.1016/j.protis.2011.11.004
Marin, B. & Melkonian, M. 1994 Flagellar hairs in prasinophytes (Chlorophyta): ultrastructure and distribution on the flagellar surface. J. Phycol., 30, 659-678.
Keywords: flagellar hairs; Mamiella; Mantoniella; Nephroselmis; Prasinophyceae; Pseudoscourfieldia; Pterosperma; Pyramimonas; Scherffelia; ultrastructure
Strain(s): 221483485 
DOI: 10.1111/j.0022-3646.1994.00659.x
Marin, B., Melkonian, M. 1999 Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist, 150, 399-417.
Strain(s): 475 
PubMed: 10714774
DOI: 10.1016/S1434-4610(99)70041-6
Marin, B., Melkonian, M. 2010 Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastid-encoded rRNA operons. Protist, 161, 304-336.
Keywords: prasinophytes; SSU rDNA; LSU rDNA; ITS2; systematics; freshwater; Monomastigales; Dolichomastigales; Mamiellales; Monomastigaceae; Dolichomastigaceae; Crustomastigaceae; Bathycoccaceae
Strain(s): 252255360483 
PubMed: 20005168
DOI: 10.1016/j.protis.2009.10.002
Marinič, D., Grilc, M., Hočevar, B., Delrue, F., Likozar, B. 2023 Liquefaction, cracking and hydrogenation of microalgae biomass resources to CO2 negative advanced biofuels: Mechanisms, reaction microkinetics and modelling. Renew. Energy, 203, 382-393.
Keywords: Microalgae; Biofuel; Liquefaction; Hydrodeoxygenation; One-pot reaction
Strain(s): 2173 
DOI: 10.1016/j.renene.2022.12.055
Marron, A. O., Ratcliffe, S., Wheeler, G. L., Goldstein, R. E., King, N., Not, F., de Vargas, C., Richter, D. J. 2016 The evolution of silicon transport in eukaryotes. Mol. Biol. Evol., 33, 3226–3248.
Keywords: silicon; eukaryotes; SIT, Lsi2; convergent evolution; transporter
Strain(s): 2687 
PubMed: 27729397
DOI: 10.1093/molbev/msw209
Marshall, J. A. & Hallegraeff, G. M. 1999 Comparative ecophysiology of the harmful alga Chattonella marina (Raphidophyceae) from South Australian and Japanese waters. J. Plankton Res., 21, 1809-1822.
Strain(s): 118 
DOI: 10.1093/plankt/21.10.1809
Marshall, J. A. & Newman, S. 2002 Differences in photoprotective pigment production between Japanese and Australian strains of Chattonella marina (Raphidophyceae). J. Exp. Mar. Biol. Ecol., 272, 13-27.
Keywords: ultraviolet radiation; microalgae; raphidophytes; Chattonella; mycosporine amino acids; pigments; xanthophyll cycle; stratospheric ozone depletion
Strain(s): 1118 
DOI: 10.1016/S0022-0981(02)00034-5
Marshall, J. A., Hovenden, M., Oda, T., Hallegraeff, G. M. 2002 Photosynthesis does influence superoxide production in the ichthyotoxic alga Chattonella marina (Raphidophyceae). J. Plankton Res., 24, 1231-1236.
Strain(s): 118 
DOI: 10.1093/plankt/24.11.1231
Marshall, J. A., Munday, B., Yoshizawa, Y., Hallegraeff, G. M. 2001 Effect of irradiance of superoxide production by Chattonella marina (Raphidophyceae) from south Australia and Japan. In Harmful Algal Blooms 2000, Eds. by Hallegraeff et al., UNESCO 2001., pp. 316-319.
Strain(s): 118 
Marshall, J. A., Nichols, P. D., Hallegraeff, G. M. 2002 Chemotaxonomic survey of sterols and fatty acids in six marine raphidophyte algae. J. Appl. Phycol., 14, 255-265.
Keywords: Chattonella antiqua; Chattonella marina; Chattonella subsalsa; chemotaxonomy; fatty acids; Fibrocapsa japonica; Heterosigma akashiwo; Olisthodiscus luteus; phycotoxins; raphydophytes; sterols
Strain(s): 15118 
Martin, R. M., Denney, M. K., Pound, H. L., Chaffin, J. D., Bullerjahn, G. S., McKay, R. M. L., Zastepa, A., Jones, K. A., Castro, H. F., Campagna, S. R., Wilhelm, S. W. 2023 Sulfolipid substitution ratios of Microcystis aeruginosa and planktonic communities as an indicator of phosphorus limitation in Lake Erie. Limnol. Oceanogr., 68, 1117-1131.
Strain(s): 843 
DOI: 10.1002/lno.12333
Maruyama, I., Ando, Y., Maeda, T., Hirayama, K. 1989 Uptake of vitamin B12 by various strains of unicellular algae Chlorella. Nippon Suisan Gakkaishi, 55, 1785-1790.
Strain(s): 48226687215721692175 
Maruyama, I., Nakamura, T., Matubayashi, T., Ando, Y., Maeda, T. 1986 Identification of the alga known as "marine Chlorella" as a member of the Eustigmatophyceae. Jpn. J. Phycol. (Sôrui), 34, 319-325.
Strain(s): 2146 
Maruyama, K. 1977 Classification of Chlorella strain by infrared absorption spectra of cell samples. Bot. Mag. Tokyo, 90, 67-77.
Strain(s): 2262276856872151216321702175 
DOI: 10.1007/BF02489470
Maruyama, K. 1977 Classification of Chlorella strains by cell appearance and group sera. Bot. Mag. Tokyo, 90, 57-66.
Strain(s): 2262276852151216321702175 
DOI: 10.1007/BF02489469
Maruyama, K. & Ohtsuki, T. 2024 A simple method for the preparation of single cells and regeneration of colonies of Botryococcus braunii NIES836. J. Microbiol. Methods, 216, 106859 (article ID).
Keywords: Botryococcus braunii; Colony regeneration; Microalgae; Nutrient limitation; Single-cell preparation
Strain(s): 836 
PubMed: 37995829
DOI: 10.1016/j.mimet.2023.106859
Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-i, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2007 Centromere dynamics in the primitive red alga Cyanidioschyzon merolae. Plant J., 49, 1122-1129.
Keywords: centromere; CENH3; chromosome segregation; Cyanidioschyzon merolae
Strain(s): 3377 
PubMed: 17319844
DOI: 10.1111/j.1365-313X.2006.03024.x
Maruyama, S., Misawa, K., Iseki, M., Watanabe, M., Nozaki, H. 2008 Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes. BMC Evol. Biol., 8, 151 (article ID).
Strain(s): 48 
PubMed: 18485228
DOI: 10.1186/1471-2148-8-151
Maruyama, S., Misumi, O., Ishii, Y., Asakawa, S., Shimizu, A., Sasaki, T., Matsuzaki, M., Shin-I, T., Nozaki, H., Kohara, Y., Shimizu, N., Kuroiwa, T. 2004 The minimal eukaryotic ribosomal DNA units in the primitive red algae Cyanidioschyzon merolae. DNA Res., 11, 83-91.
Keywords: BAC library; Genome organization; Nucleolus
Strain(s): 3377 
PubMed: 15449541
DOI: 10.1093/dnares/11.2.83
Mary, I., Tu, C.-J., Grossman, A., Vaulot, D. 2004 Effects of high light on transcripts of stress-associated genes for the cyanobacteria Synechocystis sp. PCC 6803 and Prochlorococcus MED4 and MIT9313. Microbiol., 150, 1271-1281.
Strain(s): 2887 
Masuda, I., Kamikawa, R., Ueda, M., Oyama, K., Yoshimatsu, S., Inagaki, Y., Sako, Y. 2011 Mitochondrial genomes from two red tide forming raphidophycean algae Heterosigma akashiwo and Chattonella marina var. marina. Int. J. Syst. Evol. Microbiol., 10, 130-137.
Keywords: Chattonella; Genome evolution; Heterosigma; Mitochondrial genome; Red tide
Strain(s): 115121557558603 
DOI: 10.1016/j.hal.2010.08.004
Masumoto, H., Ohmura, Y., Degawa, Y. 2019 Lichenomphalia meridionalis (Hygrophoraceae, lichenized Basidiomycota) new to Asia. Opuscula Philolichenum, 18, 379-389.
Keywords: Basidiolichen; Coccomyxa; distribution; Japan; molecular phylogeny; taxonomy
Strain(s): 4343 
Mathiot, C., Ponge, P., Gallard, B., Sassi, J.-F., Delrue, F., Le Moigne, N. 2019 Microalgae starch-based bioplastics: screening of ten strains and plasticization of unfractionated microalgae by extrusion. Carbohydr. Polym., 208/, 142-151.
Keywords: Microalgae; Bioplastics; Starch; Plasticization; Extrusion
Strain(s): 942272152217321952280 
PubMed: 30658785
DOI: 10.1016/j.carbpol.2018.12.057
Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Aeruginosins 102-A and B, new thrombin inhibitors from the cyanobacterium Microcystis viridis (NIES-102). Tetrahedron, 52, 14501-14506.
Strain(s): 102 
DOI: 10.1016/0040-4020(96)00890-3
Matsuda, H., Okino, T., Murakami, M., Yamaguchi, K. 1996 Radiosumin, a trypsin inhibitor from the blue-green alga Plectonema radiosum. J. Org. Chem., 61, 8648-8650.
Strain(s): 515 
DOI: 10.1021/jo961130m
Matsuda, Y., Shimada, T., Sakamoto, Y. 1992 Ammonium ions control gametic differentiation and dedifferentiation in Chlamydomonas reinhardtii. Plant Cell Physiol., 33, 909-914.
Keywords: cell cycle progression; Chlamydomonas reinhardtii; NH4+ starvation; organic nitrogen compounds; sexual reproduction
Strain(s): 2238 
DOI: 10.1093/oxfordjournals.pcp.a078340
Matsui, H., Sugihara, S., Wada, M., Ozaki, T., Saitoh, T., Kotani, T. 2022 Application of genetic disruption of a Nannochloropsis oceanica cell wall synthesizing gene to n-3 HUFA enrichment of Brachionus plicatilis. Aquaculture, 552, 738022 (article ID).
Keywords: cesA1; Fish oil; Homologous recombination; Live feed; Photoautotrophic microalgae
Strain(s): 2145 
DOI: 10.1016/j.aquaculture.2022.738022
Matsumoto, C., Sugiyama, T., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. IX. Further comparative studies on Chlorella and spinach leaf ribulose-1,5-diphosphate carboxylase. Arch. Biochem. Biophys., 135, 282-287.
Strain(s): 2170 
PubMed: 5391472
DOI: 10.1016/0003-9861(69)90541-4
Matsumoto, H., Takechi, K., Sato, H., Takio, S., Takano, H. 2012 Treatment with antibiotics that interfere with peptidoglycan biosynthesis inhibits chloroplast division in the desmid Closterium. PLoS One, 7, e40734 (article ID).
Strain(s): 67 
PubMed: 22815801
DOI: 10.1371/journal.pone.0040734
Matsumoto, M., Mayama, S., Nemoto, M., Fukuda, Y., Muto, M., Yoshino, T., Matsunaga, T., Tanaka, T. 2014 Morphological and molecular phylogenetic analysis of the high triglyceride-producing marine diatom, Fistulifera solaris sp. nov. (Bacillariophyceae). Phycol. Res., 62, 257-268.
Keywords: 18S rDNA; JPCC DA0580; marine diatom; morphometric analyses
Strain(s): 2722 
DOI: 10.1111/pre.12066
Matsumoto, T., Kawachi, M., Miyashita, H., Inagaki, Y. 2012 Prasinoxanthin is absent in the green-colored dinoflagellate Lepidodinium chlorophorum strain NIES-1868: pigment composition and 18S rRNA phylogeny. J. Plant Res., 125, 705-711.
Keywords: Plastid replacement; Tertiary endosymbiosis; Serial secondary endosymbiosis
Strain(s): 14111868 
PubMed: 22441568
DOI: 10.1007/s10265-012-0486-6
Matsumoto, T., Shinozaki, F., Chikuni, T., Yabuki, A., Takishita, K., Kawachi, M., Nakayama, T., Inouye, I., Hashimoto, T., Inagaki, Y. 2011 Green-colored plastids in the dinoflagellate genus Lepidodinium are of core Chlorophyte origin. Protist, 162, 268-276.
Strain(s): 626141918682432 
PubMed: 20829107
DOI: 10.1016/j.protis.2010.07.001
Matsunaga, N., Uehara, A., Murase, N., Kuriyoma, A. 2018 Cryopreservation of Spirulina (Arthrospira) platensis NIES-46 by snap-freezing considering trichome morphology. Cryobiology and Cryotechnology, 64, 75-83.
Keywords: Spirulina (Arthrospira) platensis; cyanobacteria; snap-freezing; cryopreservation; trichome morphology
Strain(s): 46 
DOI: 10.20585/cryobolcryotechnol.64.2_75
Matsunaga, S., Hori, T., Takahashi, T., Kubota, M., Watanabe, M., Okamoto, K., Masuda, K., Sugai, M. 1998 Discovery of signaling effect of UV-B/C light in the extended UV-A/blue-type action spectra for step-down and step-up photo-phobic responses in the unicellular flagellate alga Euglena gracilis. Protoplasma, 201, 45-52.
Keywords: action spectra; blue light; Euglena; photophobic responses; ultraviolet light
Strain(s): 48 
DOI: 10.1007/BF01280710
Matsunaga, S., Takahashi, T., Watanabe, M., Sugai, M., Hori, T. 1999 Control by ammonium ion of the change from step-up to step-down photophobically responding cells in the flagellate alga Euglena gracilis. Plant Cell Physiol., 40, 213-221.
Keywords: ammonium ion; blue light; Euglena; greening; photophobic responses
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a029530
Matsunaga, S., Watanabe, S., Sakaushi, S., Miyamura, S., Hori, T. 2003 Screening effect diverts the swimming directions from diaphototactic to positive phototactic in a disk-shaped green flagellate Mesostigma viride. Photochem. Photobiol., 77, 324-332.
Strain(s): 476477 
PubMed: 12685662
DOI: 10.1562/0031-8655(2003)077<0324:SEDTSD>2.0.CO;2
Matsuo, E., Inagaki, Y. 2018 Patterns in evolutionary origins of heme, chlorophyll a and isopentenyl diphosphate biosynthetic pathways suggest non-photosynthetic periods prior to plastid replacements in dinoflagellates. PeerJ, 6, e5345 (article ID).
Strain(s): 1868 
PubMed: 30083465
DOI: 10.7717/peerj.5345
Matsuo, M., Katahata, A., Satoh, S., Matsuzaki, M., Nomura, M., Ishida, K. I., Inagaki, Y., Obokata, J. 2018 Characterization of spliced leader transsplicing in a photosynthetic rhizarian amoeba, Paulinella micropora, and its possible role in functional gene transfer. PLoS One, 13, e0200961 (article ID).
Strain(s): 4060 
PubMed: 30024971
DOI: 10.1371/journal.pone.0200961
Matsushita, T., Kobayashi, Y., Nakamura, K., Matsui, Y., Ohno, K. 2010 Effect of transmembrane pressure on geosmin release from Cyanobacterial cell during microfiltration. Water Practice & Technology, 5, wpt2010049 (article ID).
Keywords: Cyanobacteria; geosmin; microfiltration; water treatment
Strain(s): 824 
DOI: 10.2166/wpt.2010.049
Matsuzaki, M. et al. 2004 Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature, 428, 653-657.
Strain(s): 13323377 
PubMed: 15071595
DOI: 10.1038/nature02398
Matsuzaki, R., Hara, Y., Nozaki, H. 2012 A taxonomic revision of Chloromonas reticulata (Volvocales, Chlorophyceae), the type species of the genus Chloromonas, based on multigene phylogeny and comparative light and electron microscopy. Phycologia, 51, 74-85.
Keywords: Chloromonadinia; Chloromonas; Chloromonas chlorococcoides comb. nov.; Chloromonas lineage; Chloromonas typhlos comb. nov.; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales
Strain(s): 447 
DOI: 10.2216/11-18.1
Matsuzaki, R., Hara, Y., Nozaki, H. 2014 A taxonomic study of snow Chloromonas species (Volvocales, Chlorophyceae) based on light and electron microscopy and molecular analysis of cultured material. Phycologia, 53, 293–304.
Keywords: Chloromonadinia; Chloromonas fukushimae; Chloromonas tenuis; Molecular phylogeny; Morphology; Snow algae; Taxonomy; Ultrastructure
Strain(s): 2379238033893390 
DOI: 10.2216/14-3.1
Matsuzaki, R., Kawachi, M., Nozaki, H., Nohara, S., Suzuki, I. 2020 Sexual reproduction of the snow alga Chloromonas fukushimae (Volvocales, Chlorophyceae) induced using cultured materials. PLoS One, 15, e0238265 (article ID).
Strain(s): 3389339044524453 
PubMed: 2845939
DOI: 10.1371/journal.pone.0238265
Matsuzaki, R., Kawai-Toyooka, H., Hara, Y., Nozaki, H. 2015 Revisiting the taxonomic significance of aplanozygote morphologies of two “cosmopolitan” snow species of the genus Chloromonas (Volvocales, Chlorophyceae). Phycologia, 54, 491–502.
Keywords: Chloromonas brevispina; Chloromonas krienitzii sp. nov.; Chloromonas nivalis; Molecular phylogeny; Morphology; Snow algae; Ultrastructure
Strain(s): 23792380338937523753 
DOI: 10.2216/15-33.1
Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2010 Light and electron microscopy and molecular phylogenetic analyses of Chloromonas pseudoplatyrhyncha (Volvocales, Chlorophyceae). Phycol. Res., 58, 202-209.
Keywords: Chloromonadinia; Chloromonas; Chloromonas lineage; molecular phylogeny; morphology; pyrenoid; ultrastructure; Volvocales
Strain(s): 2563 
DOI: 10.1111/j.1440-1835.2010.00577.x
Matsuzaki, R., Nakada, T., Hara, Y., Nozaki, H. 2013 Description of Chloromonas kasaiae sp. nov. (Volvocales, Chlorophyceae), based on comparative electron microscopy and molecular data. Phycologia, 52, 239-245.
Keywords: Chloromonadinia; Chloromonas kasaiae; Molecular phylogeny; Morphology; Taxonomy; Ultrastructure; Volvocales
Strain(s): 2862 
DOI: 10.2216/12-083.1
Matsuzaki, R., Nozaki, H., Kawachi, M. 2018 Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species. PLoS One, 13, e0193603 (article ID).
Strain(s): 4642379238025632862338937073753 
PubMed: 29570718
DOI: 10.1371/journal.pone.0193603
Matsuzaki, R., Nozaki, H., Takeuchi, N., Hara, Y., Kawachi, M. 2019 Taxonomic re-examination of “Chloromonas nivalis (Volvocales, Chlorophyceae) zygotes” from Japan and description of C. muramotoi sp. nov. PLoS One, 14, e0210986 (article ID).
Strain(s): 46423792380256328623389370737534284 
PubMed: 30677063
DOI: 10.1371/journal.pone.0210986
Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Kanesaki, Y., Yoshikawa, H., Mori, T., Nozaki, H. 2021 The Rubisco small subunits in the green algal genus Chloromonas provide insights into evolutionary loss of the eukaryotic carbon-concentrating organelle, the pyrenoid. BMC Ecol. Evol., 21, 11 (article ID).
Keywords: Chloromonas; Evolution; Green algae; Hydrophobicity of RBCS helices; Pyrenoid; Pyrenoid loss; Rubisco small subunit (RBCS)
Strain(s): 14442442522072212221522422243249937534284 
PubMed: 33514317
DOI: 10.1186/s12862-020-01733-1
Matumura, H., Muto, S., Miyachi, S. 1982 Light-induced conversion of NAD+ to NADP+ in Chlorella cells. Biochim. Biophys. Acta, 679, 300-307.
Strain(s): 21602161 
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Mazalová, P., Šarhanová, P., Ondřej, V., Poulíčková, A. 2011 Quantificaion of DNA content in freshwater microalgae using flow cytometry: a modified protocol for selected green microalgae. Fottea, 11, 317-328.
Keywords: DNA content; flow cytometry; desmids; microalgae; standards; Micrasterias pinnatifida
Strain(s): 783 
DOI: 10.5507/fot.2011.030
McDonald, S. M., Plant, J. N. Worden, A. Z. 2010 The mixed lineage nature of nitrogen transport and assimilation in marine eukaryotic phytoplankton: a case study of Micromonas. Mol. Biol. Evol., 27, 2268-2283.
Keywords: nitrogen; Micromonas; Ostreococcus; green algae; green lineage; quantitative PCR; genomics; phylogeny
Strain(s): 2672 
PubMed: 20457585
DOI: 10.1093/molbev/msq113
McGregor, G. B., Sendall, B. C., Niiyama, Y., Tuji, A., Willis, A. 2023 Chrysosporum ovalisporum is synonymous with the true-branching cyanobacterium Umezakia natans (Nostocales/Aphanizomenonaceae). J. Phycol., 59, 326-341.
Strain(s): 21262665358541034490 
PubMed: 36680435
DOI: 10.1111/jpy.13317
McKay, R. M. & Gibbs, S. P. 1989 Immunocytochemical localization of ribulose 1,5-bisphosphate carboxylase/oxygenase in light-limited and light-saturated cells of Chlorella pyrenoidosa. Protoplasma, 149, 31-37.
Keywords: pyrenoid; ribulose 1,5-bisphosphate carboxylase/oxygenase; Chlorella pyrenoidosa; immunocytochemistry
Strain(s): 6872142 
McKindles, K. M., Manes, M. A., DeMarco, J. R., McClure, A., McKay, R. M., Davis, T. W., Bullerjahn, G. S. 2020 Dissolved microcystin release coincident with lysis of a Microcystis-dominated bloom in western Lake Erie attributed to a novel cyanophage. Appl. Environ. Microbiol., 86, e01397-20.
Strain(s): 843 
PubMed: 32859600
DOI: 10.1128/AEM.01397-20
Mcmillan, R. 1957 Morphogenesis and polymorphism of Ankistrodesmus spp. J. Gen. Microbiol., 17, 658-677.
Strain(s): 219021942195 
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Meglič, A., Pecman, A., Rozina, T., Leštan, D., Sedmak, B. 2016 Electrochemical inactivation of cyanobacteria and microcystin degradation using a boron-doped diamond anode - A potential tool for cyanobacterial bloom control. J. Environ. Sci., 53, 248-261.
Keywords: Cyanobacterial bloom control; Boron-doped diamond anode; Electro-oxidation; Microcystin degradation; Protein phosphatase-1 inhibition; Water remediation
Strain(s): 843 
PubMed: 28372749
DOI: 10.1016/j.jes.2016.02.016
Meriluoto, J., Codd, G. A. (eds.) 2005 TOXIC: cyanobacterial monitoring and cyanotoxin analysis. Acta Acad. Aboensis, ser, B, Vol. 65(1), 149 pp.
Strain(s): 107 
Meriluoto, J., Karlsson, K., Spoof, L. 2004 High-throughput screening of ten microcystins and nodularins, cyanobacterial peptide hepatotoxins, by reversed-phase liquid chromatography-electrospray ionization mass spectrometry. Chromatographia, 59, 291-298.
Keywords: columun liquid chromatography; mass spectrometry detection; microcystins and nodularins; cyanobacteria; toxins
Strain(s): 107 
DOI: 10.1365/s10337-003-0163-y
Merola, A., Castaldo, R., De Luca, P., Gambardella, R., Musacchio, A., Taddei, R. 1981 Revision of Cyanidium caldarium. Three species of acidophilic algae. Giorn Bot. Ital., 115, 189-195.
Strain(s): 550 
DOI: 10.1080/11263508109428026
Metcalf, J. S., Bell, S. G., Codd, G. A. 2000 Production of novel polyclonal antibodies against the cyanobacterial toxin microcystin-LR and their application for the detection and quantification of microcystins and nodularin. Water Res., 34, 2761-2769.
Keywords: cyanobacteria; blue-green algae; microcystin; toxins; antibodies; immunoassays
Strain(s): 42102103104595 
DOI: 10.1016/S0043-1354(99)00429-7
Miao, H., Beardall, J., Gao, K. 2018 Calcification moderates the increased susceptibility to UV radiation of the coccolithophorid Gephryocapsa oceanica grown under elevated CO2 concentration: Evidence based on calcified and non-calcified cells. Photochem. Photobiol., 94, 994-1002.
Strain(s): 1318 
PubMed: 29701244
DOI: 10.1111/php.12928
Miao, H., Zhang, J., Shen, Q., Ichise, S., Asada, Y., Tian, Y., Utsumi, M., Lei, Z., Zhang, Z., Takanashi, H., Fujimoto, N., Nishimura, O., Akiba, M., Shimizu, K. 2022 Development of rapid PCR methods for the detection and quantification of geosmin-producing Dolichospermum spp. Water Air Soil Pollut., 233, 394 (article ID).
Keywords: Cyanobacteria; Musty odor; Geosmin; geoA gene; Whole-cell PCR; Whole-cell qPCR
Strain(s): 82416581660 
DOI: 10.1007/s11270-022-05859-4
Miao, M., Li, Z., Hwang, E.-A., Kim, H.-K., Lee, H., Kim, B.-H. 2020 Two new benthic diatoms of the genus Achnanthidium (Bacillariophyceae) from the Hangang River, Korea. Diversity-Basel, 12, 285 (article ID).
Keywords: Achnanthidium; freshwater; molecular phylogeny; morphology; rbcL; SSU; taxonomy
Strain(s): 372407410411412413414 
DOI: 10.3390/d12070285
Mihara, S. 1961 Changes in glucosamine content of Chlorella cells during the course of their life cycle. Plant Cell Physiol., 2, 25-29.
Strain(s): 2170 
Mihara, S. & Hase, E. 1971 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. I. Some characteristics of the cell cycle. Plant Cell Physiol., 12, 225-236.
Strain(s): 2235 
Mihara, S. & Hase, E. 1971 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. II. Effects of chloramphenicol and cycloheximide on the length of cell cycle. Plant Cell Physiol., 12, 237-241.
Strain(s): 2235 
Mihara, S. & Hase, E. 1975 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. III. Some notes on the process of zoospore liberation. Plant Cell Physiol., 16, 371-375.
Strain(s): 2235 
Mihara, S. & Hase, E. 1975 Studies on the vegetative life cycle of Chlamydomonas reinhardtii Dangeard in synchronous culture. IV. Effects of 6-methyl purine on the revolution of the cell cycle. Plant Cell Physiol., 16, 1121-1130.
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a075231
Mihara, S. & Hase, E. 1976 A short note on the effects of 6-methyl purine on the revolution of the cell cycle of Chlorella pyrenoidosa in synchronous culture. Plant Cell Physiol., 17, 403-406.
Strain(s): 226 
DOI: 10.1093/oxfordjournals.pcp.a075292
Mihara, S. & Hase, E. 1978 Studies on the vegetative life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. V. The transition point for the effect of 6-methyl purine in the cell cycle. Plant Cell Physiol., 19, 83-89.
Keywords: cell cycle; Chlamydomonas; 6-methyl purine; transition point
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a075582
Mikami, H., Kawaguchi, M., Huang, C.-J., Matsumura, H., Sugimura, T., Huang, K., Lei, C., Ueno, S., Miura, T., Ito, T., Nagasawa, K., Maeno, T., Watari, H., Yamagishi, M., Uemura, S., Ohnuki, S., Ohya, Y., Kurokawa, H., Matsusaka, S., Sun, C.-W., Ozeki, Y., Goda, K. 2020 Virtual-freezing fluorescence imaging flow cytometry. Nat. Commun., 6, 1162 (article ID).
Strain(s): 48 
PubMed: 32139684
DOI: 10.1038/s41467-020-14929-2
Miklaszewska, M., Waleron, M., Morin, N., Calusinska, M., Wilmotte, A., De Marsac, NT., Rippka, R., Waleron, K. 2012 Elucidation of the gas vesicle gene clusters in cyanobacteria of the genus Arthrospira (Oscillatoriales, Cyanophyta) and correlation with ITS phylogeny. Eur. J. Phycol., 47, 233-244.
Keywords: Arthrospira; cyanobacteria; gas vacuoles; gas vesicles; gvpA; gvpC; gvpN; internal transcribed spacer (ITS)
Strain(s): 39 
DOI: 10.1080/09670262.2012.692817
Mikulic, P. & Beardall, J. 2021 Oxidative and anti-oxidative responses to metal toxicity in an extremophilic alga (Cyanidium caldarium) and a neutrophilic alga (Chlamydomonas reinhardtii). Phycologia, 60, 513-523.
Keywords: Oxidative stress; Reactive oxygen species (ROS); Zinc toxicity
Strain(s): 2137 
DOI: 10.1080/00318884.2021.1984044
Mikulic, P., Beardall, J. 2014 Contrasting ecotoxicity effects of zinc on growth and photosynthesis in a neutrophilic alga (Chlamydomonas reinhardtii) and an extremophilic alga (Cyanidium caldarium). Chemosphere, 112, 402-411.
Keywords: Photosynthesis; Algae; Zinc; Extremophile; Neutrophile; Acclimation
Strain(s): 2137 
PubMed: 25048933
DOI: 10.1016/j.chemosphere.2014.04.049
Mimuro, M., Yamazaki, I., Tamai, N., Katoh, T. 1989 Excitation transfer in phycobilisomes at -196ºC isolated from the cyanobacterium Anabaena variabilis (M-3): Evidence for the plural transfer pathways to the terminal emitters. Biochim. Biophys. Acta, 973, 153-162.
Strain(s): 2093 
DOI: 10.1016/S0005-2728(89)80416-5
Minoda, A., Miyashita, S., Fujii, S., Inagaki, K., Takahashi, Y. 2022 Cell population behavior of the unicellular red alga Galdieria sulphuraria during precious metal biosorption. J. Hazard. Mater., 432, 128576 (article ID).
Keywords: biosorption; adsorption mechanism; single cell ICP-MS; XAFS; metal selectivity
Strain(s): 3638 
PubMed: 35313161
DOI: 10.1016/j.jhazmat.2022.128576
Minoda, A., Nagasawa, K., Hanaoka, M., Horiuchi, M., Takahashi, H., Tanaka, K. 2005 Microarray profiling of plastid gene expression in a unicellular red alga, Cyanidioschyzon merolae. Plant Mol. Biol., 59, 375-385.
Keywords: Cyanidioschyzon merolae; microarray; photosynthesis; plastid; red algae; sigma factor
Strain(s): 3377 
PubMed: 16235106
DOI: 10.1007/s11103-005-0182-1
Minoda, A., Sakagami, R., Yagisawa, F., Kuroiwa, T., Tanaka, K. 2004 Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 45, 667-671.
Keywords: Cultivation; — Cyanidioschyzon merolae; 5-FOA resistance; Homologous recombination; Red algae; Transformation
Strain(s): 3377 
PubMed: 18003671
DOI: 10.1093/pcp/pch087
Minoda, A., Sawada, H., Suzuki, S., Miyashita, S., Inagaki, K., Yamamoto, T., Tsuzuki, M. 2015 Recovery of rare earth elements from the sulfothermophilic red alga Galdieria sulphuraria using aqueous acid. Appl. Microbiol. Biotechnol., 99, 1513-1519.
Keywords: Galdieria sulphuraria; Metal recovery; Red algae; Rare earth elements; Copper
Strain(s): 3638 
DOI: 10.1007/s00253-014-6070-3
Minoda, A., Weber, A. P. M., Tanaka, K., Miyagishima, S. 2010 Nucleus-independent control of the rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol., 154, 1532-1540.
Strain(s): 3377 
PubMed: 20813908
DOI: 10.1104/pp.110.163188
Misaki, K., Morita, Y., Kobayashi, K., Sugawara, Y., Shimizu, Y., Kusakabe, T. 2019 Evaluation of algal photosynthesis inhibition activity for dissolved organic matter with the consideration of inorganic and coloring constituents. Chemosphere, 224, 333-342.
Keywords: Natural organic matter (NOM); Palse amplitude modulation (PAM); System; Lake Biwa; Wastewater treatment plant (WWTP); Ammonia; Ethyl orange
Strain(s): 21702219 
PubMed: 30826703
DOI: 10.1016/j.chemosphere.2019.02.106
Misumi, M. & Sonoike, K. 2017 Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa. Sci. Rep., 7, 46100 (article ID).
Strain(s): 547 
PubMed: 28387347
DOI: 10.1038/srep46100
Misumi, M., Katoh, H., Tomo, T., Sonoike, K. 2016 Relationship between photochemical quenching and non-photochemical quenching in six species of cyanobacteria reveals species difference in redox state and species commonality in energy dissipation. Plant Cell, 57, 1510-1517.
Keywords: Chlorophyll fluorescence measurements; Cyanobacteria; Photochemical quenching; Respiration; State transition; Thermal dissipation
Strain(s): 39 
PubMed: 26712847
DOI: 10.1093/pcp/pcv185
Misumi, O., Matsuzaki, M., Nozaki, H., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Yoshida, Y., Kuroiwa, H., Kuroiwa, T. 2005 Cyanidioschyzon merolae genome A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol., 137, 567-585.
Strain(s): 3377 
PubMed: 15681662
DOI: 10.1104/pp.104.053991
Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M. 2017 Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection. Microb. Resour. Syst., 33, 19-29.
Keywords: Cryptophyta; docosahexaenoic acid; eicosapentaenoic acid; fatty acid; Haptophyta; Heterokontophyta; microalgae
Strain(s): 1891415177111522322523323426527427527627727827928028128228429332332433033334434534634734835035337237738839139540740840941341441746146246648753454855355655755855956056258758858959060360562262369569669769869970070170270370470570670770870971071171271371471571674176576676780583799710011002100310041005100610071009101110161017104410451046104713021303132413271330133913401349135313701375137613791383138413851386138713911392139313951398139914001401169917001730181318151816182618271831186218631864186518741963196419651974197519762142214321442145214721482300233123322351236323642365236923702376250625332534253525362537259026332668268926902691269326942696269727072716271727182720272227232725272627292730273127322770277127722773283928402841284228432844285928722878289028993391368936903691 
Mitsutani, A., Yamasaki, I., Kitaguchi, H., Kato, J., Ueno, S., Ishida, Y. 2001 Analysis of algicidal proteins of a diatom-lytic marine bacterium Pseudoalteromonas sp. strain A25 by two-dimensional electrophoresis. Phycologia, 40, 286-291.
Strain(s): 324 
DOI: 10.2216/i0031-8884-40-3-286.1
Mitsuya, A., Nyunoya, T., Tamiya, H. 1953 Prepilot-plant experiment on algal mass culture. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 273-281.
Strain(s): 2170 
Miura, K., Yamano, T., Yoshioka, S., Kohinata, T., Inoue, Y., Taniguchi, F., Asamizu, E., Nakamura, Y., Tabata, S., Yamato, K. T., Ohyama, K., Fukuzawa, H. 2004 Expression profiling-based identification of CO2-responsive genes regulated by CCM1 controlling a carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 135, 1595-1607.
Strain(s): 2235 
PubMed: 15235119
DOI: 10.1104/pp.104.041400
Miura, T., Mikami, H., Isozaki, A., Ito, T., Ozeki, Y., Goda, K. 2018 On-chip light-sheet fluorescence imaging flow cytometry at a high flow speed of 1 m/s. Biomed. Opt. Express, 9, 3424-3433.
Strain(s): 48 
PubMed: 29984107
DOI: 10.1364/BOE.9.003424
Miya, A., Adachi, T., Tazawa, R., Suzuki, S., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae II. CO2/O2 gas exchange system. CELSS J., 7, 29-34 (in Japanese with English summary).
Keywords: microalgae; CO2/O2 gas exchange system; regenerative life support system
Strain(s): 39 
Miyachi, S. 1959 Effect of poisons upon the mechanism of photosynthesis as studied by the pre-illumination experiments using carbon-14 as a tracer. Plant Cell Physiol., 1, 1-15.
Strain(s): 2170 
Miyachi, S. 1960 Effect of some sulfhydryl reagents on light-induced CO2-fixation in Chlorella. Plant Cell Physiol., 1, 117-130.
Strain(s): 2170 
Miyachi, S. 1962 Turnover of phosphate compounds in Chlorella cells under phosphate deficiency in darkness. Plant Cell Physiol., 3, 1-4.
Strain(s): 2170 
Miyachi, S. 1963 Metabolism of inorganic polyphosphates in growing Chlorella cells. In Photosynthes Mechanisms of Green Plants, Eds. by Shibata, K. et al., National Academy of Sciences - National Research Council, 1145, pp. 688-697.
Strain(s): 2170 
Miyachi, S. 1979 Light-enhanced dark CO2 fixation in CO3 plants. In Encyclopedia of Plant Physiology, New Series, 6, Eds. by Gibbs, M. & Latzko, E., Springer-Verlag, Berlin, pp. 68-76.
Strain(s): 2170 
Miyachi, S. & Hogetsu, D. 1970 Effects of preillumination with light of different wagelengths on subsequent dark CO2-fixation in Chlorella cells. Can. J. Bot., 48, 1203-1207.
Strain(s): 2170 
DOI: 10.1139/b70-179
Miyachi, S. & Miyachi, S. 1961 Modes of formation of phosphate compounds and their turnover in Chlorella cells during the process of life cycle as studied by the technique of synchronous culture. Plant Cell Physiol., 2, 415-424.
Strain(s): 2170 
Miyachi, S. & Miyachi, S. 1966 Sulfolipid metabolism in Chlorella. Plant Physiol., 41, 479-486.
Strain(s): 2170 
PubMed: 16656278
DOI: 10.1104/pp.41.3.479
Miyachi, S. & Miyachi, S. 1980 Effects of ammonia on carbon metabolism in photosynthesizing Chlorella vulgaris 11h: the replacement of blue light by ammonium ion. In The Blue Light Syndrome, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 429-434.
Strain(s): 2160 
Miyachi, S. & Miyachi, S. 1985 Ammonia induces starch degradation in Chlorella cells. Plant Cell Physiol., 26, 245-252.
Keywords: ammonia effect; Chlorella; dark CO2 fixation; starch degradation; sucrose formation
Strain(s): 6872157216021702173 
DOI: 10.1093/oxfordjournals.pcp.a076903
Miyachi, S. & Miyachi, S. 1987 Some biochemical changes related to starch breakdown induced by blue light illumination and by addition of ammonia to Chlorella cells. Plant Cell Physiol., 28, 309-314.
Keywords: ammonia; adenylates; blue light; Chlorella; orthophosphate; phosphorylase
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a077297
Miyachi, S. & Okabe, K. 1976 Oxygen enhancement of photosynthesis in Anacystis nidulans cells. Plant Cell Physiol., 17, 973-986.
Strain(s): 20933277 
Miyachi, S. & Shiraiwa, Y. 1979 Form of inorganic carbon utilized for photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 20, 341-348.
Keywords: carbon dioxide fixation; carbonic anbydrase; Chlorella; photosynthesis; transport of CO2
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a075818
Miyachi, S. & Tamiya, H. 1961 Distribution and turnover of phosphate compounds in growing Chlorella cells. Plant Cell Physiol., 2, 405-414.
Strain(s): 2170 
Miyachi, S. & Tamiya, H. 1961 Some observations on the phosphorus metabolism in growing Chlorella cells. Biochim. Biophys. Acta, 46, 200-202.
Strain(s): 2170 
PubMed: 13771481
DOI: 10.1016/0006-3002(61)90669-2
Miyachi, S. & Tsuzuki, M. 1981 Carbonic anhydrase and carbon uptake in photosynthesis of green algae and terrestrial C3 plants. In Proceedings of the First Binational Joint-Symposium under Japan-Australia Cooperative Science Programme "Integration of Photosynthetic Carbon Metabolism as Basis of Plant Productivity", pp. 15-18.
Strain(s): 2160 
Miyachi, S., Hirokawa, T., Tamiya, H. 1955 Effect of quinone on the light-induced capacity of carbon dioxide fixation in green algae. J. Biochem., 42, 737-743.
Strain(s): 2170 
Miyachi, S., Hirokawa, T., Tamiya, H. 1957 The "background" CO2 fixation occurring in green cells and its possible relation to the mechanism of photosynthesis. In Research in Photosynthesis, Eds. by Gaffron, H. et al., Intersc. Publ. Inc., New York, pp. 205-212.
Strain(s): 2170 
Miyachi, S., Hirosawa, T., Tsuzuki, M. 1984 Regulation of photosynthetic carbon metabolism in microalgae by wavelength of incident light and by CO2 concentration. In Advances in Photosynthesis Research, Vol. 3, Ed. by Sybesma, C., M. Ninhoff / Dr. W. Junk Publishers, Hague, pp. 565-572.
Strain(s): 1920933277 
Miyachi, S., Hogetsu, D., Miyachi, S. 1977 Effect of environmental factors on photosynthetic carbon metabolism. In Photosynthetic CO2 Assimilation and Photorespiration, Eds. by Vaklinova, S. G. et al., Publishing House of Bulgarian Academy of Science, Sofia, pp. 15-30.
Strain(s): 2160 
Miyachi, S., Izawa, S., Tamiya, H. 1955 Effect of oxygen on the capacity of carbon dioxide fixation by green algae. J. Biochem., 42, 221-244.
Strain(s): 2170 
Miyachi, S., Kamiya, A., Miyachi, S. 1980 Effects of blue light on respiration and non-photosynthetic CO2 fixation in Chlorella 11 h cells. In The Blue Light Syndrome, Ed. by Senger, H., Springer-Verlag, Berlin, pp. 321-328.
Strain(s): 2160 
Miyachi, S., Kamiya, A., Muto, S. 1977 Isolation of peroxisomes from colorless Chlorella mutant cells and intracellular localization of isocitratelyase, malate synthase and phosphoenolpyruvate carboxylase. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 347-353.
Strain(s): 2162 
Miyachi, S., Kamiya, S., Miyachi, S. 1977 Wavelength-effect of incident light on carbon metabolish in Chlorella cells. In Biological Solar Energy Conversion, Eds. by Mitsui, A. et al., Academic Press, New York, pp. 167-182.
Strain(s): 21602162 
Miyachi, S., Kanai, R., Benson, A. A. 1968 Aerobically bound CO2 in Chlorella cells. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K. et al., University of Tokyo Press, Tokyo, pp. 246-252.
Strain(s): 2170 
Miyachi, S., Kanai, R., Miyachi, S., Aoki, S. 1964 Metabolic roles of inorganic polyphosphates in Chlorella cells. Biochim. Biophys. Acta, 93, 625-634.
Strain(s): 2170 
PubMed: 14263160
DOI: 10.1016/0304-4165(64)90345-9
Miyachi, S., Miyachi, S, Tamiya, H. 1962 Effect of preillumination on the incorporation of sulfur in the lipid fraction of Chlorella cells. Plant Cell Physiol., 3, 193-196.
Strain(s): 2170 
Miyachi, S., Miyachi, S., Benson, A. A. 1965 Metabolism of phospholipids and galactolipids by Chlorella cells. Plant Cell Physiol., 6, 789-792.
Strain(s): 2170 
Miyachi, S., Oh-hama, T., Ogasawara, N. 1968 Effects of flash light of different wagelengths on dark 14CO2-fixation in Chlorella cells. In Comparative Biochemistry and Biophysics of Photosynthesis, Eds. by Shibata, K. et al., University of Tokyo Press, Tokyo, pp. 400-407.
Strain(s): 2170 
Miyachi, S., Oh-hama, T., Tamiya, H. 1960 Effect of CO2 on the levels of DPNH and TPNH in pre-illuminated Chlorella cells. Plant Cell Physiol., 1, 151-153.
Strain(s): 2170 
Miyachi, S., Tsuzuki, M., Aizawa, K. 1985 Factors which enhance photosynthesis in microalgae under limiting CO2 concentrations. In Kinetics of Photosynthetic Carbon Metabolism in C3-plants. II. Electron Transport, Transport of CO2, Mathematical Models, Eds. by Viil, J. et al., Akademiya Nauka, Estonia SSR, pp. 88-92.
Strain(s): 21602235 
Miyachi, S., Tsuzuki, M., Avramova, S. T. 1983 Utilization modes of inorganic carbon for photosynthesis in various species of Chlorella. Plant Cell Physiol., 24, 441-451.
Keywords: bicarbonate fixation; carbonic anhydrase; Chlorella; photosynthetic CO2-fixation
Strain(s): 6872093215721602173 
Miyachi, S., Tsuzuki, M., Maruyama, I., Ganter, M., Miyachi, S. 1986 Effects of CO2 concentration during growth on the intracellular structure of Chlorella and Scenedesmus (Chlorophyta). J. Phycol., 22, 313-319.
Keywords: Chlorella; CO2 concentration; electron microscopy; pyrenoid starch; Scenedesmus
Strain(s): 68721572160217021732280 
Miyachi, S., Tsuzuki, M., Yagawa, Y. 1985 Carbonic anhydrase in various microalgae. In Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms, Eds. by Lucas, W. J. & Berry, J. A., American Society of Plant Physiologists, Rockville, Md, pp. 145-154.
Strain(s): 209321602173 
Miyaghishim, S., Nishida, K., Mori, T., Matsuzaki, M., Higashiyama, T., Kuroiwa, H., Kuroiwa, T. 2003 A plant-specific dynamin-related protein forms a ring at the chloroplast division site. Plant Cell, 15, 655-665.
Strain(s): 3377 
PubMed: 12615939
DOI: 10.1105/tpc.009373
Miyagi, N., Satoh, E., Fujii, T. 1989 Effects of n-alkylamines on the motility and viability of Heterosigma akashiwo cells. Plant Cell Physiol., 30, 637-642.
Keywords: cell viability; Heterosigma akashiwo; n-alkylamine
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a077787
Miyagi, N., Satoh, S., Fujii, T. 1992 A nitrate-inducible plasma membrane protein of a marine alga, Heterosigma akashiwo. Plant Cell Physiol., 33, 971-976.
Keywords: Heterosigma akashiwo (Raphidophycean); nitrate; plasma membrane; protein
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a078349
Miyagishima, S. & Wei, J. L. 2018 Procedures for cultivation, observation, and conventional experiments in Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 31-41.
Keywords: Cell cycle; Cell division; Cyanidiales; Cyanidioschyzon merolae; Red algae; Synchronous culture
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_3
Miyagishima, S., Suzuki, K., Okazaki, K., Kabeya, Y. 2012 Expression of the nucleus-encoded chloroplast division genes and proteins regulated by the algal cell cycle. Mol. Biol. Evol., 29, 2957-2970.
Keywords: cell cycle; chloroplast division; endosymbiosis; endosymbiotic gene transfer
Strain(s): 296484547133221703377 
PubMed: 22490821
DOI: 10.1093/molbev/mss102
Miyagishima, S., Takahara, M., Kuroiwa, T. 2001a Novel filaments 5 nm diameter constitute the cytosolic ring of the plastid division apparatus. Plant Cell, 13, 707-721.
Strain(s): 3377 
PubMed: 11251107
DOI: 10.1105/tpc.13.3.707
Miyagishima, S., Takahara, M., Mori, T., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2001b Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings. Plant Cell, 13, 2257-2268.
Strain(s): 3377 
PubMed: 11595800
DOI: 10.1105/tpc.010185
Miyagishima, S., Wei, J. L., Nozaki, H., Hirooka, S. 2018 Cyadidiales: Evolution and habitats. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 3-15.
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_1
Miyagishimi, S., Tanaka, K. 2021 The unicellular red alga Cyanidioschyzon merolae—The simplest model of a photosynthetic eukaryote. Plant Cell Physiol., 62, 926–941.
Keywords: Cyanidiales; Cyanidioschyzon merolae; Photosynthetic eukaryotes; Red algae
Strain(s): 3377 
PubMed: 33836072
DOI: 10.1093/pcp/pcab052
Miyashita, S., Groombridge, A. S., Fujii, S., Minoda, A., Takatsu, A., Hioki, A., Chiba, K., Inagaki, K. 2014 Highly efficient single-cell analysis of microbial cells by time-resolved inductively coupled plasma mass spectrometry. J. Anal. At. Spectrom., 29, 1598-1606.
Strain(s): 3377 
DOI: 10.1039/C4JA00040D
Miyashita, S., Ogura, T., Fujii, S., Inagaki, K., Takahashi, Y., Minoda, A. 2021 Effect of lyophilization on the acid resistance of a unicellular red alga Galdieria sulphuraria during platinum recovery. J. Hazard. Mater. Advances, 3, 100015 (article ID).
Keywords: Biosorption; Metal recovery; Algae; XAFS; ICP-MS; Platinum
Strain(s): 3638 
DOI: 10.1016/j.hazadv.2021.100015
Miyashita, S., Ogura, T., Kondo, T., Fujii, S., Inagaki, K., Takahashi, Y., Minoda, A. 2022 Recovery of Au from dilute aqua regia solutions via adsorption on the lyophilized cells of a unicellular red alga Galdieria sulphuraria: A mechanism study. J. Hazard. Mater., 425, 127982 (article ID).
Keywords: Biosorption; Precious metal; Acidic effluent; Remediation; Wastewater treatment
Strain(s): 3638 
PubMed: 34894509
DOI: 10.1016/j.jhazmat.2021.127982
Miyauchi, H., Harada, K., Suzuki, Y., Okada, K., Aoki, M., Umemura, T., Fujiwara,S., Tsuzuki, M. 2021 Development of an algal cell-attached solid surface culture system for simultaneous wastewater treatment and biomass production. Algal Res., 58, 102394 (article ID).
Keywords: Microalgae; Attached cell culture; Wastewater; Phosphorus uptake; Chlorella
Strain(s): 2160 
DOI: 10.1016/j.algal.2021.102394
Miyauchi, H., Okada, K., Fujiwara, S., Tsuzuki, M. 2020 Characterization of CO2 fixation on algal biofilms with an infrared gas analyzer and importance of a space-rich structure on the surface. Algal Res., 46, 101814 (article ID).
Keywords: Attached culture; Carbon fixation; Chlorella; Photosynthesis
Strain(s): 2160 
DOI: 10.1016/j.algal.2020.101814
Miyoshi, Y. & Tsubo, Y. 1969 Permanent bleaching of Euglena by chloramphenicol. Plant Cell Physiol., 10, 221-225.
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a074389
Mizoguchi, T., Kimura, Y., Yoshitomi, T., Tamiaki, H. 2011 The stereochemistry of chlorophyll-c3 from the haptophyte Emiliania huxleyi: the (132R)-enantiomers of chlorophylls-c are exclusively selected as the photosynthetically active pigments in chromophyte algae. Biochim. Biophys. Acta-Bioenerg., 1807, 1467-1473.
Keywords: chlorophyll-c; chiral HPLC; enantioimer; chromophyte algae; light-harvesting complexes
Strain(s): 71281696837 
PubMed: 21806961
DOI: 10.1016/j.bbabio.2011.07.008
Mizoi, K., Rodríguez-González, V., Sasaki, M., Suzuki, S., Honda, K., Ishida, N., Suzuki, N., Kuchitsu, K., Kondo, T., Yuasa, M., Fujishima, A., Teshima, K., Terashima, C. 2022 Interactions between pH, reactive species, and cells in plasma-activated water can remove algae. RSC Adv., 12, 7626-7634.
Strain(s): 2170 
PubMed: 35424714
DOI: 10.1039/D1RA07774K
Mizuguchi, H., Fujii, S., Fujii, S., Higa, R., Ishikawa, K., Hayakawa, K., Okamoto, T., Fuse, Y., Karatani, H., Yamada, E. 2018 Application of SYBR green real-time PCR assay to monitoring of phytoplankton during cultivation and in Lake Biwa. Limnological Study, , 3-12.
Keywords: SYBR Green; real-time PCR; phytoplankton; Lake Biwa; dissolved organic matter
Strain(s): 109275391665 
Mizukami-Murata, S., Suzuki, Y., Sakurai, K., Yamashita, H. 2021 Freshwater alga Raphidocelis subcapitata undergoes metabolomic changes in response to electrostatic adhesion by micrometer-sized nylon 6 particles. Environ. Sci. Pollut. Res., 28, 66901–66913.
Keywords: Powdered nylon 6; Raphidocelis subcapitata; Growth inhibition; Electrostatic adhesion; Metabolomic analysis; Amino acid catabolic pathway; γ-glutamyl cycle
Strain(s): 35 
PubMed: 34236613
DOI: 10.1007/s11356-021-15300-8
Mizuno, Y., Sato, A., Watanabe, K., Hirata, A., Takeshita, T., Ota, S., Sato, N., Zachleder, V., Tsuzuki, M., Kawano, S. 2013 Sequential accumulation of starch and lipid induced by sulfur deficiency in Chlorella and Parachlorella species. Bioresour. Technol., 129, 150-155.
Keywords: Sulfur deficiency; Chlorella spp.; Parachlorella kessleri; Starch; Lipids
Strain(s): 21692173 
PubMed: 23238344
DOI: 10.1016/j.biortech.2012.11.030
Mochida, K., Onduka, T., Amano, H., Ito, M., Tanaka, H., Fujii, K. 2012 Use of species sensitivity distributions to predict no-effect concentrations of an antifouling biocide, pyridine triphenylborane, for marine organisms. Mar. Pollut. Bull., 64, 2807-2814.
Keywords: Algal growth inhibition test; Bayesian inference; Crustacean immobilization test; Fish acute toxicity; Primary risk analysis
Strain(s): 324 
PubMed: 23044030
DOI: 10.1016/j.marpolbul.2012.09.007
Mogi, K., Fujii, T. 2012 Evaluation of ethanol toxicity to oil producing algae using a microfluidic device. Proceedings of the 16th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Okinawa, Japan 2012, pp. 857-859.
Keywords: Microalgae; Botryococcus braunii; Toxicity assay; Vernier wall
Strain(s): 836 
Mogi, Y., Hamaji, T., Suzuki, M., Ferris, P., Mori, T., Kabeya, Y., Miyagishima, S., Nozaki, H. 2012 Evidence for tubular mating structures induced in each mating type of heterothallic Gonium pectorale (Volvocales, Chlorophyta). J. Phycol., 48, 670-674.
Keywords: bilateral mating papilla; Chlorophyta; Gonium pectorale; isogamete; mating type; sexual reproduction; tubular mating structure; Volvocales
Strain(s): 17101711 
PubMed: 27011083
DOI: 10.1111/j.1529-8817.2012.01149.x
Mohd Zul, S., Iwamoto, K., Mohd Rahim, M. A., Abdullah, N., Mohamad, S. E., Shimizu, K., Hara, H. 2020 Production of liquid fertilizer from chicken feather waste by using subcritical water treatment for plant and algal growth. IOP Conf. Ser.: Earth Environ. Sci., 479, 012033 (article ID).
Keywords: Subcritical water; fertilizer; chicken feather; Galdieria
Strain(s): 3638 
DOI: 10.1088/1755-1315/479/1/012033
Moia, I. C., Pereira, S. B., Domizio, P., De Philippis, R., Adessi, A. 2023 Phormidium ambiguum and Leptolyngbya ohadii exopolysaccharides under low water availability. Polymers, 15, 1889 (article ID).
Keywords: EPS monosaccharidic composition; water deprivation; soil restoration; dehydration; biocrusts; biofilms
Strain(s): 2121 
PubMed: 37112036
DOI: 10.3390/polym15081889
Mojzeš, P., Gao, L., Ismagulova, T., Pilátová, J., Moudříková, Š., Gorelova, O., Solovchenko, A., Nedbal, L., Salih, A. 2020 Guanine, a high-capacity and rapid-turnover nitrogen reserve in microalgal cells. Proc. Natl. Acad. Sci. U. S. A., 117, 32722-32730.
Strain(s): 228525872860 
PubMed: 33293415
DOI: 10.1073/pnas.2005460117
Monteiro, P. R., do Amaral, S. C., Siqueira, A. S., Xavier, L. P., Santos, A. V. 2021 Anabaenopeptins: What We Know So Far. Toxins, 13, 522 (article ID).
Keywords: cyanobacteria; peptide; NRPS; anabaenopeptin
Strain(s): 81204595 
PubMed: 34437393
DOI: 10.3390/toxins13080522
Moog, D., Nozawa, A., Tozawa, Y., Kamikawa, R. 2020 Substrate specifcity of plastid phosphate transporters in a non-photosynthetic diatom and its implication in evolution of red algaderived complex plastids. Sci Rep, 10, 1167 (article ID).
Strain(s): 3581 
PubMed: 31980711
DOI: 10.1038/s41598-020-58082-8
Moon, G., Lee, N., Kang, S., Park, J., Kim, Y.-E., Oh, Y.-K., Chung, S. 2021 Hydrothermal synthesis of novel two-dimensional α-quartz nanoplates and their applications in energy-saving, high-efficiency, microalgal biorefineries. Chem. Eng. J., 413, 127467 (article ID).
Keywords: α-Quartz; Nanoplates; Hydrothermal; Microalgae; Biorefinery
Strain(s): 144 
DOI: 10.1016/j.cej.2020.127467
Moore, L. R., Rocap, G., Chisholm, S. W. 1998 Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature, 393, 464-467.
Strain(s): 28802887 
PubMed: 9624000
DOI: 10.1038/30965
Moore, R. B., Oborník, M., Janouskovec, J., Chrudimský, T., Vancová, M., Green, D. H., Wright, S. W., Davies, N. W., Bolch, C. J., Heimann, K., Slapeta, J., Hoegh-Guldberg, O., Logsdon, J. M., Carter, D. A. 2008 A photosynthetic alveolate closely related to apicomplexan parasites. Nature, 451, 959-963.
Strain(s): 4391 
PubMed: 18288187
DOI: 10.1038/nature06635
Morel, A., Ahn, Y.-H., Partensky, F., Vaulot, D., Claustre, H. 1993 Prochlorococcus and Synechococcus: a comparative study of their optical properties in relation to their size and pigmentation. J. Mar. Res., 51, 617-649.
Strain(s): 28802881 
DOI: 10.1357/0022240933223963
Morel, F.M.M., Rueter, J.G., Anderson,D.M., Guillard, R.R. 1979 Aquil: a chemically defined phytoplankton culture medium for trace metal studies. J. Phycol., 15, 135-141.
Strain(s): 3600 
DOI: 10.1111/j.1529-8817.1979.tb02976.x
Mori, F., Erata, M., Watanabe, M. M. 2002 Cryopreservation of cyanobacteria and green algae in the NIES-Collection. Microbiol. Cult. Coll., 18, 45-55.
Keywords: cryopreservation; cyanobacteria; green algae; FDA staining method; NIES-Collection
Strain(s): 192122232425262728293031323334353637383940414445465051525354555658596061626364656667686970737475767778798081878990919293949596979899100101102103104105106107108109110111112119120122123125127128129130131132133134135137138139144147151152153154155156157158159160162163164165166167168170171172173174175176177178179180181182183185186187188189191192193194197198199200201202203204205206207208209210211212213214215216217224226227228229230231232241242243244245246248257259261262263266267268287288289290294295297298299300301302303305306308309310312313329334337338339340341342349351359360361362375378379380382384385390394396397398415416418419421422423424425426427428429430431432433434436437438439440446447448449450451452453454455456457458459460464468469474478479480481503504505506507509510512514515522523524527528529530531532536537538539540541542543544545546564565566567568569570571572573574575576577578579580581582583584585592593594595596597598604610628630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667672685686687688689690691692693694717718719720721722723724725726727728729 
Mori, I. C., Arias-Barreiro, C. R., Koutsaftis, A., Ogo, A., Kawano, T., Yoshizuka, K., Inayat-Hussain, S. H., Aoyama, I. 2015 Toxicity of tetramethylammonium hydroxide to aquatic organisms and its synergistic action with potassium iodide. Chemosphere, 120, 299-304.
Keywords: Tetramethylammonium hydroxide; Potassium iodide; Aquatic toxicity; Synergism; D. magna; Semiconductor wastewater
Strain(s): 35 
PubMed: 25151133
DOI: 10.1016/j.chemosphere.2014.07.011
Mori, S., Nakamura, Y., Watanabe, M. M., Yamochi, S., Watanabe, M. 1982 The effect of various environmental factors on the growth yield of red tide algae II. Olisthodiscus luteus. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 71-86 (in Japanese with English summary).
Strain(s): 6 
Morimoto, D., Yoshida, T., Sawayama, S. 2020 Draft genome sequence of the astaxanthin-producing microalga Haematococcus lacustris Strain NIES-144. Microbiol. Resour. Ann.., 9, e00128-20 (article ID).
Strain(s): 144 
PubMed: 32499361
DOI: 10.1128/MRA.00128-20
Morimoto, T., Murakami, N., Nagatsu, A., Sakakibara, J. 1993 Studies on glycolipids. VII. Isolation of two new sulfoquinovosyl diacylglycerols from the green alga Chlorella vulgaris. Chem. Pharm. Bull., 41, 1545-1548.
Keywords: sulfoquinovosyl diacylglycerol (SQDG); glyceroglycolipid; green alga; Chlorella vulgaris; branched fatty acid
Strain(s): 227 
DOI: 10.1248/cpb.41.1545
Morimura, Y. & Tamiya, H. 1963 Anomalies of the life cycle of Chlorella caused by some anti-metabolites. Maheshwari Comm. Vol., J. Indian Bot. Soc., 42A, 122-129.
Strain(s): 2170 
Morimura, Y., Yanagi, S., Tamiya, H. 1964 Synchronous mass-culture of Chlorella. Plant Cell Physiol., 5, 281-289.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a079043
Morita, E., Abe, T., Tsuzuki, M., Fujiwara, S., Sato, N., Hirata, A., Sonoike, K., Nozaki, H. 1999 Role of pyrenoids in the CO2-concentrating mechanism: comparative morphology, physiology and molecular phylogenetic analysis of closely related strains of Chlamydomonas and Chloromonas (Volvocales). Planta, 208, 365-372.
Keywords: Chlamydomonas; Chloromonas; CO2-concentrating mechanism; molecular phylogeny; pyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase
Strain(s): 447 
DOI: 10.1007/s004250050571
Moriya, M., Nakayama, T., Inouye, I. 2000 Ultrastructure and 18S rDNA sequence analysis of Wobblia lunata gen. et sp. nov., a new heterotrophic flagellate (Stramenopiles, incertae sedis). Protist, 151, 41-55.
Strain(s): 1015 
PubMed: 10896132
DOI: 10.1078/1434-4610-00006
Moriya, M., Nakayama, T., Inouye, I. 2002 A new class of the Stramenopiles, Placididea Classis nova: description of Placidia cafeteriopsis gen. et sp. nov. Protist, 153, 143-156.
Strain(s): 1014 
PubMed: 12125756
DOI: 10.1078/1434-4610-00093
Morsy, F. M., Elbadry, M., El-Sayed, W. S., Abd El-Hady, D. 2019 Dark and photofermentation H2 production from hydrolyzed biomass of the potent extracellular polysaccharides producing cyanobacterium Nostoc commune and intracellular polysaccharide (glycogen) enriched Anabaena variabil is NIES-2095. Int. J. Hydrog. Energy, 44, 16199-16211.
Keywords: Anabaena variabilis; Biohydrogen; Clostridium; Cyanobacterial polysaccharides; Nostoc commune; Rhodobacter capsulatus
Strain(s): 2095 
DOI: 10.1016/j.ijhydene.2019.05.024
Morsy, N., Matsuoka, S., Houdai, T., Matsumori, N., Adachi, S., Murata, M., Iwashita, T., Fujita, T. 2005 Isolation and structure elucidation of a new amphidinol with a truncated polyhydroxyl chain from Amphidinium klebsii. Tetrahedron, 61, 8606-8610.
Keywords: amphidinol; Amphidinium; AM7; AM3; CID MS/MS
Strain(s): 613 
DOI: 10.1016/j.tet.2005.07.004
Moten, D., Batsalova, T., Basheva, D., Mladenov, R., Dzhambazov, B., Teneva, I. 2018 Outer membrane efflux protein (OMEP) is a suitable molecular marker for resolving the phylogeny and taxonomic status of closely related cyanobacteria. Phycol. Res., 66, 31-36.
Keywords: cyanobacterial taxonomy; phylogenetic analysis; transmembrane transporter sequences
Strain(s): 3984321043754375537563757 
DOI: 10.1111/pre.12203
Motokawa, S., Taguchi, S. 2015 Scattering properties of the dinoflagellates Prorocentrum micans and P. minimum. Plankton Benthos Res., 10, 154-162.
Keywords: absorption; ac-9; equivalent spherical diameter; ratio of cellular carbon to chlorophyll a; scattering efficiency
Strain(s): 218237 
DOI: 10.3800/pbr.10.154
Motwalli, O., Essack, M., Jankovic, BR., Ji, B., Liu, X., Ansari, HR., Hoehndorf, R., Gao, X., Arold, ST., Mineta, K., Archer, JA., Gojobori, T., Mijakovic, I., Bajic, VB. 2017 In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria. BMC Genomics, 18, 33 (article ID).
Keywords: Cyanobacteria; Free fatty acids; Biofuel; Screening method; Cell factories; Bioinformatics; Optimization; Computer science
Strain(s): 39 
PubMed: 2805677
DOI: 10.1186/s12864-016-3389-4
Mousavi, S., Najafpour, G.D., Mohammadi, M., Seifi, M.H. 2018 Cultivation of newly isolated microalgae Coelastrum sp. in wastewater. Bioprocess. Biosyst. Eng., 41, 519-530.
Keywords: Microalgae; Coelastrum sp.; CO2 fixation; Wastewater treatment
Strain(s): 244 
PubMed: 29299676
DOI: 10.1007/s00449-017-1887-7
Muhetaer, G., Asaeda, T., Jayasanka, S. M. D. H., Baniya, M. B., Abeynayaka, H. D. L., Rashid, M. H., Yan, H. Y. 2020 Effects of light intensity and exposure period on the growth and stress responses of two cyanobacteria species: Pseudanabaena galeata and Microcystis aeruginosa. Water, 12, 407 (article ID).
Keywords: cyanobacterial growth; stress responses; Pseudanabaena galeata; Microcystis aeruginosa; oxidative stress; antioxidative enzymes
Strain(s): 111512 
PubMed: 32045866
DOI: 10.3390/w12020407
Mukai, K., Shimasaki, Y., Qiu, X., Kato-Unoki, Y., Chen, K., Takai, Y., Khanam M. R. M., Chairil, A. E., Oshima, Y. 2020 Gene expression stability of candidate reference genes under different culture conditions for quantitative PCR in the raphidophyte Chattonella marina. Phycologia, 59, 556-565.
Keywords: Chattonella marina; Quantitative PCR; Reference gene
Strain(s): 1 
DOI: 10.1080/00318884.2020.1816041
Mukai, K., Teramoto, A., Qiu, X., Shimasaki, Y., Kato-Unoki, Y., Lee, J. M., Mizoguchi, N., Khanam, M. R. M., Satone, H., Tatsuke, T., Kusakabe, T., Oshima, Y. 2018 Gene structure and cDNA sequence of 2-Cys peroxiredoxin in the harmful algal bloom species Chattonella marina and its gene transcription under different light intensities. Eur. J. Phycol., 53, 29-38.
Keywords: Chattonella marina; 2-Cys peroxiredoxin; H2O2 scavenging activity; strong light; harmful algal bloom species; nuclear-encoded plastid RNA polymerase; plastid-encoded plastid RNA polymerase
Strain(s): 1 
DOI: 10.1080/09670262.2017.1346206
Mulholland, M.R., Shoemaker, C., Ohki, K., Capone, D.G. 1999 Utilization of combined forms of N in cultures and populations of Trichodesmium spp.. In Marine cyanobacteria and related organisms, Eds. by Charpy, L., Larkum, Bulletin de l'Institut Oceanographique, Monaco, Special paper, 19, pp. 279-286.
Strain(s): 3600 
Mulhollannd, M. R., Ohki, K., Capone, D. G. 1999 Nitrogen utilization and metabolism relative to pattern of N2 fixation in cultures of Trichodesmium NIBB1067. J. Phycol., 35, 977-988.
Keywords: amino acids; glutamate; glutamine; glutamine synthetase; N turnover; N2 fixation; NH4+ uptake; NO3-; Trichodesmium; urea
Strain(s): 3600 
DOI: 10.1046/j.1529-8817.1999.3550977.x
Mulhollannd, M. R., Ohki, K., Capone, D. G. 2001 Nutrient controls on nitrogen uptake and metabolism by natural populations and cultures of Trichodesmium (Cyanobacteria). J. Phycol., 37, 1001-1009.
Keywords: Glutamate; glutamine; glutamine synthetase; N2 fixation; N uptake; Trichodesmium
Strain(s): 3600 
DOI: 10.1046/j.1529-8817.2001.00080.x
Munakata, H., Nakada, T., Nakahigashi, K., Nozaki, H., Tomita, M. 2016 Phylogenetic position and molecular chronology of a colonial green flagellate, Stephanosphaera pluvialis (Volvocales, Chlorophyceae), among unicellular algae. J. Eucaryot. Microbiol., 63, 340-348.
Keywords: Balticola; coloniality; divergence time; evolution; molecular phylogeny
Strain(s): 12314442142843243944656756957165686188796810482293256441244125 
PubMed: 26595722
DOI: 10.1111/jeu.12283
Munekage, Y., Iwasaki, N., Le, T. X., Hasegawa, H., Natukawa, Y., Kikuhara, S. 2002 Studies on the distribution of antibiotics in water, suspended solid, bottom mud in semi-enclosed sea and its accumulation in plankton. Proceedings of the 12th International Offshore and Polar Engineering Conference, Kitakyushu, Japan 2002, pp. 425-431.
Keywords: antibiotics; distribution; mud; sedimentation particles; accumulation; absorption; plankton
Strain(s): 17613 
Mungpakdee, S., Shinzato, C., Takeuchi, T., Kawashima, T., Koyanagi, R., Hisata, K., Tanaka, M., Goto, H., Fujie, M., Lin, S., Satoh, N., Shoguchi, E. 2014 Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome. Genome Biol. Evol., 6, 1408-1422.
Keywords: RNA editing; plastid-associated genes; dinoflagellate; Symbiodinium minutum; hydropathy; light-harvesting complex proteins; minicircles
Strain(s): 3808 
PubMed: 24881086
DOI: 10.1093/gbe/evu109
Muñoz, H. E, Li, M., Riche, C. T., Nitta, N., Diebold, E., Lin, J., Owsley, K., Bahr, M., Goda, K., Di Carlo, D. 2018 Single-cell analysis of morphological and metabolic heterogeneity in Euglena gracilis by fluorescence imaging flow cytometry. Anal. Chem., 90, 11280–11289.
Strain(s): 48 
PubMed: 30138557
DOI: 10.1021/acs.analchem.8b01794
Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, D. J., Archibald, J. M., Slamovits, C. H. 2017 The new red algal subphylum proteorhodophytina comprises the largest and most divergent plastid genomes known. Curr. Biol., 27, 1-8.
Keywords: chloroplast; group II introns; insertion sequences; deep phylogeny; ptDNA; plastid genome; red algae; Rhodophyta; secondary plastids; transposases
Strain(s): 26622742 
PubMed: 28528908
DOI: 10.1016/j.cub.2017.04.054
Murakami, H., Kakutani, N., Kuroyanagi, Y., Iwai, M., Hori, K., Shimojima, M., Ohta, H. 2020 MYB-like transcription factor NoPSR1 is crucial for membrane lipid remodeling under phosphate starvation in the oleaginous microalga Nannochloropsis oceanica. FEBS Lett., 594, 3384-3394.
Keywords: membrane lipid; Nannochloropsis oceanica; phosphate starvation; transcription factor
Strain(s): 2145 
PubMed: 32770739
DOI: 10.1002/1873-3468.13902
Murakami, H., Nobusawa, T., Hori, K., Shimojima, M., Ohta, H. 2018 Betaine lipid is crucial for adapting to low temperature and phosphate deficiency in Nannochloropsis. Plant Physiol., 177, 181–193.
Strain(s): 2145 
PubMed: 29555786
DOI: 10.1104/pp.17.01573
Murakami, M., Ishida, K., Okino, T., Okita, Y., Matsuda, H., Yamaguchi, K. 1995 Aeruginosins 98-A and B, trypsin inhibitors from the blue-green alga Microcystis aeruginosa (NIES-98). Tetrahedron Letters, 36, 2785-2788.
Strain(s): 98 
DOI: 10.1016/0040-4039(95)00396-T
Murakami, M., Itou, Y., Ishida, K., Shin, H. J. 1999 Prenylagaramides A and B, new cyclic peptides from two strains of Oscillatoria agardhii. J. Nat. Prod., 62, 752-755.
Strain(s): 205596 
Murakami, M., Kodani, S., Ishida, K., Matsuda, H., Yamaguchi, K. 1997 Micropeptin 103, a chymotrypsin inhibitor from the cyanobacterium Microcystis viridis (NIES-103). Tetrahedron Letters, 38, 3035-3038.
Strain(s): 103 
DOI: 10.1016/S0040-4039(97)00528-5
Murakami, M., Okita, Y., Matsuda, H., Okino, T., Yamaguchi, K. 1994 Aeruginosin 298-A, a thrombin and trypsin inhibitor from the blue-green alga Microcystis aeruginosa (NIES-298). Tetrahedron Letters, 35, 3129-3132.
Strain(s): 298 
DOI: 10.1016/S0040-4039(00)76848-1
Murakami, M., Sato, N., Anegawa, A., Nakada, N., Harada, A., Komatsu, T., Takada, H., Tanaka, H., Ono, Y., Furumai, H. 2008 Multiple evaluations of the removal of pollutants in road runoff by soil infiltration. Water Res., 42, 2745-2755.
Keywords: Groundwater contamination; Infiltration facility; Road dust; Urban runoff; Soil infiltration column test; Water-soluble micropollutants
Strain(s): 35 
DOI: 10.1016/j.watres.2008.02.004
Murakami, M., Shin, H. J., Matsuda, H., Ishida, K., Yamaguchi, K. 1997 A cyclic peptide, anabaenopeptin B, from the cyanobacterium Oscillatoria agahdhii. Phytochemistry, 44, 449-452.
Keywords: Oscillatoria agardhii; cyanobacterium; cyclic peptide; anabaenopeptin B
Strain(s): 204 
DOI: 10.1016/S0031-9422(96)00437-2
Murakami, M., Sun, Q., Ishida, K., Matsuda, H., Okino, T., Yamaguchi, K. 1997 Microviridins, elastase inhibitors from the cyanobacterium Nostoc minutum (NIES-26). Phytochemistry, 45, 1197-1202.
Keywords: Nostoc minutum; Cyanophyceae; cyclic peptide; microviridin G; microviridin H; elastase inhibitor; protease inhibitor
Strain(s): 26 
DOI: 10.1016/S0031-9422(97)00131-3
Murakami, M., Suzuki, S., Itou, Y., Kodani, S., Ishida, K. 2000 New anabaenopeptins, potent carboxypeptidase-A inhibitors from the cyanobacterium Aphanizomenon flos-aquae. J. Nat. Prod., 63, 1280-1282.
Strain(s): 81 
PubMed: 11000037
DOI: 10.1021/np000120k
Murakami, N., Shirahashi, H., Nagatsu, A., Sakakibara, J. 1992 Two unsaturated 9R-hydroxy fatty acids from the cyanobacterium Anabaena flos-aquae f. flos-aquae. Lipids, 27, 776-778.
Strain(s): 74 
Murakami, N., Shirahashi, H., Nagatsu, A., Sakakibara, J. 1993 Studies on glycolipids. VI. New acyl-distributed glyceroglycolipids from the nitrogen-fixing cyanobacterium Anabaena flos-aquae f. flos-aquae. Chem. Pharm. Bull., 41, 1177-1179.
Keywords: glyceroglycolipid; nitrogen-fixing algae; Anabaena flos-aquae f. flos-aquae; cyanobacterium
Strain(s): 74 
DOI: 10.1248/cpb.41.1177
Murakami, N., Shirahashi, H., Sakakibara, J., Tsuchida, Y. 1992 A novel glyceroglycolipid from the nitrogen-fixing cyanobacterium Anabaena flos-aquae f. flos-aquae. Chem. Pharm. Bull., 40, 285-287.
Keywords: cyanobacterium; Anabaena flos-aquae f. flos-aquae; nitrogen-fixation; glycolipid
Strain(s): 74 
DOI: 10.1248/cpb.40.285
Muramoto, K., Nakada, T., Shitara, T., Hara, Y., Nozaki, H. 2010 Re-examination of the snow algal species Chloromonas miwae (Fukushima) Muramoto et al., comb. nov. (Volvocales, Chlorophyceae) from Japan, based on molecular phylogeny and cultured material. Eur. J. Phycol., 45, 27-37.
Keywords: Carteria miwae; Chloromonas miwae comb. nov.; Chlorophyceae; molecular phylogeny; morphology; sexual cycle; snow algae; taxonomy; Volvocales
Strain(s): 23792380 
DOI: 10.1080/09670260903272607
Murano, F. & Fujita, Y. 1967 Comparative studies of photochemical oxidation-reduction reactions in lamellar fragments of various algae and spinach. Plant Cell Physiol., 8, 673-682.
Strain(s): 19213748 
DOI: 10.1093/oxfordjournals.pcp.a079302
Murata, N. 1977 Uphill energy transfer from chlorophyll a to phycobilins in blue-green algae Anabaena variabilis and Anacystis nidulans. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 9-13.
Strain(s): 20933277 
Murata, N., Wada, H., Hirasawa, R. 1984 Reversible and irreversible inactivation of photosynthesis in relation to the lipid phases of membranes in the blue-green algae (cyanobacteria) Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 25, 1027-1032.
Strain(s): 20933277 
Muravenko, O., Selyakh, I., Kononenko, N., Stadnichuk, I. 2001 Chromosome numbers and nuclear DNA contents in the red microalgae Cyanidium caldarium and three Galdieria species. Eur. J. Phycol., 36, 227–232.
Keywords: chromosome number; Cyanidium caldarium; DNA content; Galdieria maxima; Galdieria partita; Galdieria sulphuraria; genome size
Strain(s): 3638 
DOI: 10.1080/09670260110001735378
Myint, A. A., Hariyanto, P., Irshad, M., Ruqian, C., Wulandari, S., Hong, M. E., Sim, S. J., Kim, J. 2022 Strategy for high-yield astaxanthin recovery directly from wet Haematococcus pluvialis without pretreatment. Bioresour. Technol., 346, 126616 (article ID).
Keywords: Haematococcus pluvialis; Astaxanthin; Wet ball mill extraction; Antioxidant activities
Strain(s): 144 
PubMed: 34954361
DOI: 10.1016/j.biortech.2021.126616
Nagai, H., Satake, M., Murata, M., Yasumoto, T. 1990 Screening of marine phytoplankton for antifungal substances. In Toxic Marine Phyto-plankton, Eds. by Graneli, E., Sundstrom, B., Edler, L. & Anderson, D. M., Elsevier Science Pub., New York, pp. 385-390.
Strain(s): 161215 
Nagai, M., Hirano, T., Shibata, T. 2019 Phototactic algae-driven unidirectional transport of submillimeter-sized cargo in a microchannel. Micromachines, 10, 130 (article ID).
Keywords: microrobot; phototaxis; Volvox; micro-swimmer; biohybrid system; motion control
Strain(s): 865 
PubMed: 30781488
DOI: 10.3390/mi10020130
Nagai, M., Oguri, M., Shibata, T. 2015 Characterization of light-controlled Volvox as movable microvalve element assembled in multilayer microfluidic device. Jpn. J. Appl. Phys., 54, 067001 (article ID).
Strain(s): 865 
DOI: 10.7567/JJAP.54.067001
Nagai, T. 2017 Predicting herbicide mixture effects on multiple algal species using mixture toxicity models. Environ. Toxicol. Chem., 36, 2624-2630.
Keywords: Pesticide; Species sensitivity distribution; Mixture toxicology; Algae; Mode of action
Strain(s): 71487512797 
PubMed: 28316094
DOI: 10.1002/etc.3800
Nagai, T. 2020 Sensitivity differences among seven algal species to 12 herbicides with various modes of action. J. Pestic. Sci., 44, 225-232.
Keywords: algae; difference in species sensitivity; herbicide
Strain(s): 3277 
DOI: 10.1584/jpestics.D19-039
Nagai, T., Horio, T., Yokoyama, A., Kamiya, T., Takano, H., Makino, T. 2012 Ecological risk assessment of on-site soil washing with iron(III) chloride in cadmium-contaminated paddy field. Ecotox. Environ. Safe., 80, 84-90.
Keywords: Risk assessment; Soil washing; Bioassay; Species sensitivity distribution
Strain(s): 35 
PubMed: 22377402
DOI: 10.1016/j.ecoenv.2012.02.011
Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2005 Limiting nutrients on the growth of bloom-forming cyanobacteria with special focus on iron speciation. Verh. Internat. Verein. Limnol., 29, 949-952.
Keywords: limiting nutrient; algal growth potential test; speciation; iron
Strain(s): 44204 
DOI: 10.1080/03680770.2005.11902823
Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2006 Effect of iron complexation with dissolved organic matter on the growth of cyanobacteria in a eutrophic lake. Aquat. Microb. Ecol., 44, 231-239.
Keywords: dissolved organic matter; DOM; cyanobacteria; iron; organic complexation
Strain(s): 44204 
DOI: 10.3354/ame044231
Nagai, T., Imai, A., Matsushige, K., Fukushima, T. 2007 Growth characteristics and growth modeling of Microcystis aeruginosa and Planktothrix agardhii under iron limitation. Limnology, 8, 261-270.
Keywords: iron; growth rate; uptake rate; model simulation; cyanobacteria
Strain(s): 44204 
DOI: 10.1007/s10201-007-0217-1
Nagai, T., Ishihara, S., Yokoyama, A., Iwafune, T. 2011 Effects of four rice paddy herbicides on algal cell viability and the relationship with population recovery. Environ. Toxicol. Chem., 30, 1898-1905.
Keywords: pesticide; ecological risk; flow cytometry; green algae
Strain(s): 35 
PubMed: 21590715
DOI: 10.1002/etc.582
Nagai, T., Taya, K., Annoh, H., Ishihara, S. 2013 Application of a fluorometric microplate algal toxicity assay for riverine periphytic algal species. Ecotox. Environ. Safe., 94, 37-44.
Keywords: Attached algae; In-vivo fluorescence; Pesticides; Species sensitivity distribution
Strain(s): 357173414487512797 
DOI: 10.1016/j.ecoenv.2013.04.020
Nagai, T., Taya, K., Yoda, I. 2016 Comparative toxicity of 20 herbicides to 5 periphytic algae and the relationship with mode of action. Environ. Toxicol. Chem., 35, 368-375.
Keywords: Attached algae; In-vivo fluorescence; Pesticides; Species sensitivity distribution
Strain(s): 71487512797 
PubMed: 26174500
DOI: 10.1002/etc.3150
Nagao, M. & Uemura, M. 2006 Cold acclimation of green alga (Charophyceae) Klebsormidium flaccidum phylogenetically related to land plants: freezing tolerance, cell structure and compatible solute composition. Plant Cell Physiol., 47, Suppl., 223.
Strain(s): 2408 
DOI: 10.14841/jspp.2006.0.796.0
Nagao, M. & Uemura, M. 2007 Isolation of sucrose phosphate and glutamate decarboxylase genes of a green alga Klebsormidium flaccidum associated with cold acclimation. Plant Cell Physiol., 48, Suppl., 237.
Strain(s): 2408 
DOI: 10.14841/jspp.2007.0.884.0
Nagao, M. & Uemura, M. 2012 Sucrose phosphate phosphatase in the green alga Klebsormidium flaccidum (Streptophyta) lacks an extensive C-terminal domain and differs from that of land plants. Planta, 235, 851-861.
Strain(s): 2408 
PubMed: 22095241
DOI: 10.1007/s00425-011-1550-5
Nagao, M., Matsui, K., Uemura, M. 2008 Klebsormidium flaccidum, a charophycean green alga, exhibits cold acclimation that is closely associated with compatible solute accumulation and ultrastructural changes. Plant Cell Environ., 31, 872-885.
Keywords: amino acid; Charophyceae; freezing tolerance; osmotic strength; soluble sugar; ultrastructure
Strain(s): 2408 
PubMed: 18315534
DOI: 10.1111/j.1365-3040.2008.01804.x
Nagao, R., Ueno, Y., Furutani, M., Kato, K., Shen, J.-R., Akimoto, S. 2023 Biochemical and spectroscopic characterization of PSI‑LHCI from the red alga Cyanidium caldarium. Photosynth. Res., 156, 315–323.
Keywords: Cyanidium caldarium; Excitation-energy transfer; PSI-LHCI; Red algae
Strain(s): 2137 
PubMed: 36781711
DOI: 10.1007/s11120-023-00999-y
Nagao, R., Yokono, M., Kato, K., Ueno, Y., Shen, J.-R., Akimoto, S. 2021 High‑light modification of excitation‑energy‑relaxation processes in the green fagellate Euglena gracilis. Photosynth. Res., 149, 303–311.
Keywords: Euglena gracilis; Time-resolved fuorescence; Photoprotection; Photosynthesis
Strain(s): 48 
PubMed: 34037905
DOI: 10.1007/s11120-021-00849-9
Nagarajan, D., Lee, D.-J., Chang, J. 2018 Heterotrophic microalgal cultivation. In Bioreactors for microbial biomass and energy conversion, Eds. by Liao Q., Chang J., Herrmann C., Xia A., Springer, Singapore, pp. 117-160.
Strain(s): 1442272280 
DOI: 10.1007/978-981-10-7677-0_4
Nagase, H., Hirooka, T., Ehara, Y., Yamashita, R, Tanimoto, S., Hirata, K., Miyamoto, K. 2005 NOx removal system for exhaust gas using freshwater microalgae. J. Environ. Biotechnol., 5, 37-41 (in Japanese with English summary).
Keywords: microalgae; nitrogen oxides; treatment of exhaust gas; NO sensor; reactor
Strain(s): 23 
Nagase, H., Inthorn, D., Isaji, Y., Oda, A., Hirata, K., Miyamoto, K. 1997 Selective cadmium removal from hard water using NaOH-treated cells of the cyanobacterium Tolypothrix tenuis. J. Ferment. Bioeng., 84, 151-154.
Keywords: cyanobacteria; cadmium; calcium; magnecium; hard water; sodium hydroxide
Strain(s): 23 
DOI: 10.1016/S0922-338X(97)82545-7
Nagase, H., Inthorn, D., Oda, A., Nishimura, J., Kajiwara, Y., Park, M.-O., Hirata, K., Miyamoto, K. 2005 Improvement of selective removal of heavy metals in cyanobacteria by NaOH treatment. J. Biosci. Bioeng., 99, 372-377.
Keywords: cyanobacteria; cadmium; zinc; copper; lead; hard water
Strain(s): 2344 
PubMed: 16233804
DOI: 10.1263/jbb.99.372
Nagashima, H. 1994 Natural products of the Cyanidiophyceae. In Evolutionary Pathways and Enigmatic Algae: Cyanidium caldarium (Rhodophyta) and Related Cells, Ed. by Seckbach, J., Kluwer Academic Publishers, Netherlands, pp. 201-214.
Strain(s): 3891 
DOI: 10.1007/978-94-011-0882-9_16
Nagashima, H. & Fukuda, I. 1983 Floridosides in unicellular hot spring algae. Phytochemistry, 22, 1949-1951.
Keywords: Cyanidium caldarium; Chroococcidiopsis sp.; hot spring algae; chemotaxonomy; low MW carbohydrates; floridoside; iso-floridoside; autotroph; heterotroph
Strain(s): 25021373891 
DOI: 10.1016/0031-9422(83)80020-X
Nagasoe, S., Toda, S., Shimasaki, Y., Osima, Y., Uchida, T., Honjo, T. 2006 Growth inhibition of Gyrodinium instriatum (Dinophyceae) by Skeletonema costatum (Bacillariophyceae). Afr. J. Mar. Sci., 28, 325-329.
Keywords: allelopathy; Gyrodinium instriatum; Skeletonema costatum; species interaction
Strain(s): 324 
DOI: 10.2989/18142320609504171
Naito, K., Imai, I., Nakahara, H. 2008 Complexation of iron by microbial siderophores and effects of iron chelates on the growth of marine microalgae causing red tides. Phycol. Res., 56, 58-67.
Keywords: chelate; growth; iron; microalgae; red tide; siderophore
Strain(s): 1 
DOI: 10.1111/j.1440-1835.2008.00485.x
Naito, K., Suzuki, M., Mito, S., Hasegawa, H., Matsui, M., Imai, I. 2006 Effects of the substances secreted from Closterium aciculare (Charophyceae, Chlorophyta) on the growth of freshwater phytoplankton under iron-deficient conditions. Plankton Benthos Res., 1, 191-199.
Keywords: Closterium aciculare; freshwater phytoplankton; growth; iron-complexing ligand; iron-deficient conditions
Strain(s): 104215248333528 
DOI: 10.3800/pbr.1.191
Nakada, T. & Nozaki, H. 2007 Re-evaluation of three Chlorogonium (Volvocales, Chlorophyceae) species based on 18S ribosomal RNA gene phylogeny. Eur. J. Phycol., 42, 177-182.
Keywords: Chlorogonium; Chlorophyceae; culture strain; molecular phylogeny; monophyletic species; 18S rRNA; species taxonomy
Strain(s): 69213571358 
DOI: 10.1080/09670260601145816
Nakada, T. & Nozaki, H. 2007 Two species of Chlamydomonas (Volvocales, Chlorophyceae) new to Japan. J. Jpn. Bot., 82, 179-189.
Keywords: Chlamydomonas perpusilla; Chlamydomonas pumilio; culture strain; taxonomy
Strain(s): 184818491850 
Nakada, T. & Nozaki, H. 2009 Taxonomic study of two new genera of fusiform green flagellates, Tabris gen. nov. and Hamakko gen. nov. (Volvocales, Chlorophyceae). J. Phycol., 45, 482-492.
Keywords: Chlorogonium; Hamakko gen. nov.; molecular phylogeny; Tabris gen. nov.; taxonomy; ultrastructure; Volvocales
Strain(s): 122637748752760968135813591849185018692293229422954125 
PubMed: 27033826
DOI: 10.1111/j.1529-8817.2009.00652.x
Nakada, T. & Susanti, H. 2020 Taxonomy and nomenclature of the recently published chlamydomonad genera Ostravamonas and Paludistella (Volvocales, Chlorophyceae). Phytotaxa, 449, 295-298.
Strain(s): 43174318 
DOI: 10.11646/phytotaxa.449.3.8
Nakada, T. & Tomita, M. 2011 Chlamydomonas neoplanoconvexa nom. nov. and its unique phylogenetic position within Volvocales (Chlorophyceae). Phycol. Res., 59, 194-199.
Keywords: Caudivolvoxa; Chlamydomonas neoplanoconvexa nom. nov.; molecular phylogeny; morphology; pyrenoid; Volvocales
Strain(s): 2570 
DOI: 10.1111/j.1440-1835.2011.00617.x
Nakada, T. & Tomita, M. 2017 Morphology and phylogeny of a new wall‐less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae). J. Phycol., 53, 108-117.
Keywords: cell wall; contractile vacuoles; Hapalochloris nozakii gen. et sp. nov.; mitochondria; molecular phylogeny; morphology; new species; taxonomy; Volvocale
Strain(s): 2254232037053760376137623763 
PubMed: 27767210
DOI: 10.1111/jpy.12484
Nakada, T., Ito, T., Tomita, M. 2016 18S ribosomal RNA gene phylogeny of a colonial volvocalean lineage (Tetrabanaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and its close relatives. J. Jpn. Bot., 91, 345-354.
Keywords: 18S rRNA; colonial; green algae; molecular phylogeny; unicellular; Volvocales
Strain(s): 4184564604745415445455645665716546667217257287357378678778798808818828831362224222462266256733884126 
Nakada, T., Matsuzaki, R., Krienitz, L., Tomiwa, M., Nozaki, H. 2015 Taxonomic reassessment of strains formerly classified as Chloromonas insignis (Volvocales, Chlorophyceae) and description of Gloeomonas anomalipyrenoides sp. nov. Acta Phytotax. Geobot., 66, 23-33.
Keywords: 18S rRNA; Chloromonas; culture strain; Gloeomonas; light microscopy; new species; phycology; phylogeny
Strain(s): 447364036413642 
DOI: 10.18942/apg.KJ00009868503
Nakada, T., Nakazawa, A., Nozaki, H. 2005 Two species of Chlorogonium (Volvocales, Chlorophyceae) from Japan. J. Jpn. Bot., 80, 197-207.
Keywords: Chlorogonium; Chlorophyceae; culture strain; distribution; taxonomy
Strain(s): 1357135813591360 
Nakada, T., Nozaki, H., Pröschold, T. 2008 Molecular phylogeny, ultrastructure, and taxonomic revision of Chlorogonium (Chlorophyta): emendation of Chlorogonium and description of Gungnir gen. nov. and Rusalka gen.nov. J. Phycol., 44, 751-760.
Keywords: Chlorogonium; Gungnir gen.nov.; molecular phylogeny; morphology; Rusalka gen.nov.; taxonomy; ultrastructure; Volvocales
Strain(s): 12343969275175576113571359136018694125 
DOI: 10.1111/j.1529-8817.2008.00525.x
Nakada, T., Nozaki, H., Tomita, M. 2010 Another origin of coloniality in volvocaleans: the phylogenetic position of Pyrobotrys Arnoldi (Spondylomoraceae, Volvocales). J. Eucaryot. Microbiol., 57, 379-382.
Keywords: Chlorophyceae; molecular phylogeny; multicellularity
Strain(s): 2564 
PubMed: 20553352
DOI: 10.1111/j.1550-7408.2010.00488.x
Nakada, T., Nozaki, H., Tomita, M. 2012 Light microscopy and phylogenetic analyses of Chlamydomonas species (Volvocales, Chlorophyceae). I. Chlamydomonas pseudomacrostigma and Chlamydomonas media. Acta Phytotax. Geobot., 62, 69-78.
Keywords: 18S rRNA; Chlamydomonas media; Chlamydomonas pseudomacrostigma; light microscopy; molecular phylogeny, phycology
Strain(s): 27432744 
DOI: 10.18942/apg.KJ00008111418
Nakada, T., Shinkawa, H., Ito, T., Tomita, M. 2010 Recharacterization of Chlamydomonas reinhardtii and its relatives with new isolates from Japan. J. Plant Res., 123, 67-78.
Keywords: Chlamydomonas reinhardtii; Chlorophyceae; distribution; phycology; species; taxonomy
Strain(s): 17081858246224632464 
PubMed: 19882207
DOI: 10.1007/s10265-009-0266-0
Nakada, T., Soga, T., Tomita, M., Nozaki, H. 2010 Chlorogonium complexum sp. nov. (Volvocales, Chlorophyceae), and morphological evolution of Chlorogonium. Eur. J. Phycol., 45, 97-106.
Keywords: Chlorogonium complexum sp. nov.; Chlorophyceae; molecular phylogeny; morphology; pyrenoids; taxonomy
Strain(s): 69275175275322962297 
DOI: 10.1080/09670260903383263
Nakada, T., Suda, S., Nozaki, H. 2007 A taxonomic study of Hafniomonas (Chlorophyceae) based on a comparative examination of cultured material. J. Phycol., 43, 397-411.
Keywords: Chlorophyceae; Hafniomonas; morphology; new species; taxonomy
Strain(s): 257656171417151716171717181720 
DOI: 10.1111/j.1529-8817.2007.00328.x
Nakada, T., Tomita, M. 2014 Light microscopy and phylogenetic asalyses of Chlamydomonas species (Volvocales, Chlorophyceae). II. Molecular phylogeny, secondary Microglena opisthopyren, and M. media, comb. nov. Acta Phytotax. Geobot., 65, 67-73.
Keywords: Chlamydomonas; ITS-2; Microglena; molecular phylogeny; phycology; synonymy
Strain(s): 27432744 
DOI: 10.18942/apg.KJ00009406722
Nakada, T., Tomita, M., Nozaki, H. 2010 Volvulina compacta (Volvocaceae, Chlorophyceae), new to Japan, and its phylogenic position. J. Jpn. Bot., 85, 364-369.
Keywords: molecular phylogeny; taxonomy; Volvocaceae; Volvulina compacta
Strain(s): 2567 
Nakada, T., Tomita, M., Wu, J.-T., Nozaki, H. 2016 Taxonomic revision of Chlamydomonas subg. Amphichloris (Volvocales, Chlorophyceae), with resurrection of the genus Dangeardinia and Descriptions of Ixipapillifera gen. nov. and Rhysamphichloris gen. nov. J. Phycol., 52, 283-304.
Keywords: Chlamydomonas subg.; Amphichloris; Dangeardinia; Ixipapillifera; mitochondria; molecular phylogeny; morphology; new species; Rhysamphichloris; taxonomy; Volvocales
Strain(s): 2320232123222575370237033704370537063707 
PubMed: 27037593
DOI: 10.1111/jpy.12397
Nakada, T., Tsuchida, Y., Arakawa, K., Ito, T., Tomita, M. 2014 Hybridization between Japanese and North American Chlamydomonas reinhardtii (Volvocales, Chlorophyceae). Phycol. Res., 62, 232-236.
Keywords: biogeography; Chlamydomonas reinhardtii; Chlorophyceae; mating population; species
Strain(s): 246324643378337933803381 
DOI: 10.1111/pre.12061
Nakada, T., Tsuchida, Y., Tomita, M. 2019 Improved taxon sampling and multigene phylogeny of unicellular chlamydomonads closely related to the colonial volvocalean lineage Tetrabaenaceae-Goniaceae-Volvocaceae (Volvocales, Chlorophyceae). Mol. Phylogenet. Evol., 130 1-8.
Keywords: Alga; Chlamydomonas; Colony evolution; Multigene phylogeny; Vitreochlamys; Zoosporangium
Strain(s): 4184374564604745415445455645665695715776546667217257287357378678798808828838871362185824622567338333884241424242434244424542464247424842494250425142524253425442554256 
PubMed: 30266459
DOI: 10.1016/j.ympev.2018.09.013
Nakada,T., Ota, S. 2016 What is the correct name for the type of Haematococcus Flot. (Volvocales, Chlorophyceae)? Taxon, 65, 343-348.
Keywords: cryopreservation; epitype; Haematococcus; lectotype
Strain(s): 2264 
DOI: 10.12705/652.11
Nakagawa, M., Takamura, Y., Yagi, O. 1987 Isolation and characterization of the slime from a cyanobacterium, Microcystis aeruginosa K-3A. Agric. Biol. Chem., 51, 329-337.
Strain(s): 604 
DOI: 10.1080/00021369.1987.10868065
Nakahara, M., Ito, H., Yano, H., Harimaya, K. 1988 Eutrophication in three reservoirs as the sources of the waterworks in Kobe City. Jpn. J. Water Treat. Biol., 24, 19-24 (in Japanese with English title).
Strain(s): 35 
Nakai, S., Asaoka, S., Okuda, T., Nishijima, W. 2014 Growth inhibition of Microcystis aeruginosa by allelopathic compounds originally isolated from Myriophyllum spicatum: temperature and light effects and evidence of possible major mechanisms. J. Chem. Eng. Japan, 47, 488-493.
Keywords: Allelopathy; Cyanobacterium; Light Intensity Effect; Photosystem II Quantum Yield; Temperature Effect
Strain(s): 87 
DOI: 10.1252/jcej.13we253
Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 1999 Growth inhibition of blue-green algae by allelopathic effects of macrophytes. Wat. Sci. Tech., 39, 47-53.
Keywords: allelopathy; blue-green algae; coexistence; growth inhibition; macrophyte; Myriophyllum spicatum
Strain(s): 7587512 
DOI: 10.1016/S0273-1223(99)00185-7
Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 2000 Myriophyllum spicatum-released allelopathic polyphenols inhibiting growth of blue-green algae Microcystis aeruginosa. Water Res., 34, 3026-3032.
Keywords: Myriophyllum spicatum; allelochemical; polyphenol; synergistic growth inhibition; autoxidation; blue-green algae
Strain(s): 87 
DOI: 10.1016/S0043-1354(00)00039-7
Nakai, S., Yamada, S., Hosomi, M. 2004 Cyanobacterial growth inhibition effects of fatty acids released from Myriophyllum spicatum. J. Jpn. Soc. Water Environ., 27, 125-130 (in Japanese with English summary).
Keywords: allelochemical; Microcystis aeruginosa; Myriophyllum spicatum; fatty acid; synergistic growth inhibition
Strain(s): 87 
Nakai, S., Yamada, S., Hosomi, M. 2005 Anti-cyanobacterial fatty acids released from Myriophyllum spicatum. Hydrobiologia, 543, 71-78.
Keywords: allelochemical; fatty acid; Microcystis aeruginosa; Myriophyllum spicatum
Strain(s): 87 
DOI: 10.1007/s10750-004-6822-7
Nakai, S., Yamane, S., Hosomi, M. 2000 Algal growth inhibition effects of Myriophyllum spicatum-releasing four allelopathic polyphenols. J. Jpn. Soc. Wat. Environ., 23, 726-730 (in Japanese with English summary).
Keywords: allelochemical; polyphenol; algae; concentration-dependent synergistic growth inhibition; autoxidation
Strain(s): 35718796512 
Nakai, S., Zou, G., Okuda, T., Tsai, T.-Y., Song, X., Nishijima, W., Okada, M. 2010 Anti-cyanobacterial allelopathic effects of plants used for artificial floating islands. Allelopathy J., 26, 113-122.
Keywords: Acorus gramineus; aquatic and terrestrial plants; artificial floating island; Canna generalis; cyanobacterium; growth inhibition; Iris pseudacorus; Lythrum salicaria; Scirpus tabernaemontani; Typha angustifolia
Strain(s): 87 
Nakai, S., Zou, G., Song, X., Pan, Q., Zhou, S., Hosomi, M. 2008 Release of anti-cyanobacterial allelochemicals from aquatic and terrestrial plants applicable for artificial floating islands. J. Water Environ. Technol., 6, 55-63.
Keywords: allelopathy; canna; carboxylic comp.; cyanobacteria; growth inhibition; phenolic comp.; umbrella plant
Strain(s): 87 
DOI: 10.2965/jwet.2008.55
Nakajima, A., Horikoshi, T., Sakaguchi, T. 1979 Uptake of copper ion by green microalgae. Agric. Biol. Chem., 43, 1455-1460.
Strain(s): 2212227322742279 
DOI: 10.1080/00021369.1979.10863659
Nakajima, N., Teramoto, T., Kasai, F., Sano, T., Tamaoki, M., Aono, M., Kubo, A., Kamada, H., Azumi, Y., Saji, H. 2007 Glycosylation of bisphenol A by freshwater microalgae. Chemosphere, 69, 934-941.
Keywords: Metabolite; Glucoside; Galactoside; Endocrine disruptors
Strain(s): 359496151245424468763 
PubMed: 17629547
DOI: 10.1016/j.chemosphere.2007.05.088
Nakajima, T., Takahashi, M. 1991 A photo-bioreactor using algal phototaxis for solids-liquid separation. Water Res., 25, 1243-1247.
Keywords: wastewater treatment; microalgae; Euglena gracilis; phototaxis; solids-liquid separation; bioreactor; photo-clarifier
Strain(s): 48 
DOI: 10.1016/0043-1354(91)90063-V
Nakamura, A., Okamoto, T., Komatsu, N., Ooka, S., Oda, T., Ishimatsu, A., Muramatsu, T. 1998 Fish mucus stimulates the generation of superoxide anion by Chattonella marina and Heterosigma akashiwo. Fish. Sci., 64, 866-869.
Keywords: red tide plankton; Raphidophyceae; fish mucus; reactive oxygen species
Strain(s): 6 
DOI: 10.2331/fishsci.64.866
Nakamura, H. 1993 Results of AGP experiments [AGP, T-P, PO4-P no shiken oyobi bunsekikekka]. Unpublished report in Ebara Yujiraito Co. Ltd,. 32 pp. (in Japanese).
Strain(s): 35101 
Nakamura, H. 2019 Water chemical remediation for simultaneous removal of phosphate ion and blue-green algae from anthropogenically eutrophied pond. In Water Chemistry, pp. 1-17.
Keywords: resource removal; calcium chloride; phosphorus; water bloom; anthropogenic eutrophication; organic pollution
Strain(s): 87 
DOI: 10.5772/intechopen.88490
Nakamura, H., Sawada, K., Araie, H., Shiratori, T., Ishida, K-I., Suzuki, I., Shiraiwa, Y. 2016 Composition of long chain alkenones and alkenoates as a function of growth temperature in marine haptophyte Tisochrysis lutea. Org. Geochem., 99, 78-89.
Keywords: Alkenones; Chemotaxonomy; Tisochrysis; Isochrysis; UK37
Strain(s): 100025902697 
DOI: 10.1016/j.orggeochem.2016.06.006
Nakamura, H., Sawada, K., Araie, H., Suzuki, I., Shiraiwa, Y. 2015 n-Nonacosadienes from the marine haptophytes Emiliania huxleyi and Gephyrocapsa oceanica. Phytochemistry, 111, 107-113.
Keywords: Emiliania huxleyi; Gephyrocapsa oceanica; Haptophyte; Nonacosadiene; Noelaerhabdaceae; Long chain alkene; Biomarker
Strain(s): 8371315 
PubMed: 25595675
DOI: 10.1016/j.phytochem.2014.12.023
Nakamura, M., Yamagishi, M., Yoshizaki, F., Sugimura, Y. 1992 The syntheses of plastocyanin and cytochrome c-553 are regulated by copper at the pre-translational level in a green alga, Pediastrum boryanum. J. Biochem., 111, 219-224.
Strain(s): 301 
PubMed: 1314811
DOI: 10.1093/oxfordjournals.jbchem.a123740
Nakamura, M., Yoshizaki, F., Sugimura, Y. 2000 Accumulation of plastocyanin mRNA lacking 5' region in the green alga Pediastrum boryanum grown under copper-deficient conditions. Plant Cell Physiol., 41, 33-41.
Keywords: cDNA sequence; copper regulation; green alga; mRNA accumulation; Pediastrum boryanum; plastocyanin
Strain(s): 301 
PubMed: 10750706
DOI: 10.1093/pcp/41.1.33
Nakamura, Y. 1983 Change in molecular weight distribution in starch when degraded at different temperatures in Chlorella vulgaris. Plant Sci. Lett., 30, 259-265.
Keywords: Chlorella; photosynthetic CO2 fixation; starch metabolism; temperature
Strain(s): 2160 
DOI: 10.1016/0304-4211(83)90164-5
Nakamura, Y. 1987 Effects of growth conditions on nitrate, ammonium and phosphate uptake by Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 115-126 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y. 1998 Growth and grazing of a large heterotrophic dinoflagellate, Noctiluca scintillans, in laboratory cultures. J. Plankton Res., 20, 1711-1720
Strain(s): 27440 
DOI: 10.1093/plankt/20.9.1711
Nakamura, Y. & Imamura, M. 1983 Change in properties of starch when photosynthesized at different temperature in Chlorella vulgaris. Plant Sci. Lett., 31, 123-131.
Keywords: Chlorella; photosynthetic CO2 fixation; starch metabolism; temperature
Strain(s): 2160 
DOI: 10.1016/0304-4211(83)90048-2
Nakamura, Y. & Imamura, M. 1983 Characteristics of a-glucan phosphorylase from Chlorella vulgaris. Phytochemistry, 22, 835-840.
Keywords: Chlorella vulgaris; Chlorophyceae; phospholyrase; starch; ADP-glucose; UDP-glucose
Strain(s): 2160 
DOI: 10.1016/0031-9422(83)85008-0
Nakamura, Y. & Imamura, M. 1983 Characterization of Chlorella phosphorylase: the glucan specificity and effect of temperature. Phytochemistry, 22, 2395-2399.
Keywords: Chlorella vulgaris; Chlorophyceae; phosphorylase; photosynthesis; starch; temperature
Strain(s): 2160 
DOI: 10.1016/0031-9422(83)80126-5
Nakamura, Y. & Imamura, M. 1985 Regulation of ADP-glucose pyrophosphorylase from Chlorella vulgaris. Plant Physiol., 78, 601-605.
Strain(s): 2160 
PubMed: 16664290
DOI: 10.1104/pp.78.3.601
Nakamura, Y. & iyachi, S. 1977 Conversion of glucose-polymer to sucrose in Chlorella induced by high temperature. In Biological Solar Energy Conversion, Eds. by Mitsui, A. et al., Academic Press, New York, pp. 203-212.
Strain(s): 2160 
Nakamura, Y. & Miyachi, S. 1980 Effects of temperature and CO2 concentration on photosynthetic CO2 fixation by Chlorella. Plant Cell Physiol., 21, 765-774.
Keywords: Chlorella; CO2 fixation; glucose-polymer; glycolate; sucrose; temperature
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076051
Nakamura, Y. & Miyachi, S. 1980 Effects of temperature on glycolate metabolism in Chlorella. Plant Cell Physiol., 21, 1541-1549.
Keywords: Chlorella; CO2 fixation; glucose-polymer; glycolate; sucrose; temperature
Strain(s): 2160 
DOI: 10.1093/pcp/21.8.1541
Nakamura, Y. & Miyachi, S. 1982 Changes in starch photosynthesized at different temperature in Chlorella. Plant Sci. Lett., 27, 1-6.
Strain(s): 2160 
DOI: 10.1016/0304-4211(82)90065-7
Nakamura, Y. & Miyachi, S. 1982 Effect of temperature on starch degradation in Chlorella vulgaris 11h cells. Plant Cell Physiol., 23, 333-341.
Keywords: Chlorella vulgaris; CO2 fixation; starch; sucrose; temperature (starch degradation)
Strain(s): 2160 
Nakamura, Y. & Watanabe, M. M. 1983 Growth characteristics of Chattonella antiqua Part 2. Effects of nutrients on growth. J. Oceanogr. Soc. Japan, 39, 151-155.
Strain(s): 1 
DOI: 10.1007/BF02070258
Nakamura, Y. & Watanabe, M. M. 1983 Growth characteristics of Chattonella antiqua (Raphidophyceae). Part 1. Effects of temperature, salinity, light intensity and pH on growth. J. Oceanogr. Soc. Japan, 39, 110-114.
Strain(s): 1 
Nakamura, Y. & Watanabe, M. M. 1983 Nitrate and phosphate uptake kinetics of Chattonella antiqua grown in light/dark cycles. J. Oceanogr. Soc. Japan, 39, 167-170.
Strain(s): 1 
DOI: 10.1007/BF02070260
Nakamura, Y. & Watanabe, M. M. 1984 Diurnal vertical migration of a red tide flagellate, Chattonella antiqua with special reference to the ecological role. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 97-102 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y. & Watanabe, M. M. 1984 Effects of nutrients on the growth of Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 87-95 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y. & Watanabe, M. M. 1984 Effects of temperature, salinity, light intensity and pH on the growth of Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 79-85 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y. & Watanabe, M. M. 1984 Nitrate and phosphate uptake kinetics of Chattonella antiqua grown in light/dark cycles. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 103-109 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y., Sawai, K., Mochida, M., Watanabe, M. 1987 An approach to estimate the limiting nutrient of Chattonella antiqua in the Seto Inland Sea - Semicontinuous culture using natural seawater. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 197-212 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y., Sawai, K., Watanabe, M. 1987 Growth inhibition of a red tide flagellate, Chattonella antiqua by cupric ion. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 127-138 (in Japanese with English summary).
Strain(s): 1 
Nakamura, Y., Takahashi, J-I., Sakurai, A., Inaba, Y., Suzuki, E., Nihei, S., Fujiwara, S., Tsuzuki, M., Miyashita, H., Ikemoto, H., Kawachi, M., Sekiguchi, H., Kurano, N. 2005 Some Cyanobacteria synthesize semi-amylopectin type α-polyglucans instead of glycogen. Plant Cell Physiol., 46, 539-545.
Keywords: Amylopectin; Cyanobacteria; Glycogen; α-Polyglucan; Starch
Strain(s): 36592 
PubMed: 15695453
DOI: 10.1093/pcp/pci045
Nakamura, Y., Watanabe, M. M., Watanabe, M. 1982 The effect of various environmental factors on the growth yield of red tide algae. I. Chattonella antiqua. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 53-70 (in Japanese with English summary).
Strain(s): 1 
Nakane, D., Enomoto, G., Bäehre, H., Hirose, Y., Wilde, A., Nishizaka, T. 2022 Thermosynechococcus switches the direction of phototaxis by a c-di-GMP-dependent process with high spatial resolution. eLife, 11, e73405 (article ID).
Strain(s): 2134 
PubMed: 35535498
DOI: 10.7554/eLife.73405
Nakanishi, A., Iritani, K., Sakihama, Y., Ozawa, N., Mochizuki, A., Watanabe, M. 2020 Construction of cell-plastics as neo-plastics consisted of cell-layer provided green alga Chlamydomonas reinhardtii covered by two-dimensional polymer. AMB Express, 10, 112 (article ID).
Keywords: Chlamydomonas reinhardtii; Two-dimensional polymer; Stacking structure; Cell-plastics
Strain(s): 2235 
PubMed: 32524300
DOI: 10.1186/s13568-020-01046-y
Nakanishi, A., Iritani, K., Sakihama, Y., Watanabe, M. 2020 Investigation of the mechanical strength of cell-plastics fabricated using unicellular green algal cells and varying weight ratios of biodegradable polybutylene succinate. Int. J. Microbiol. Biotechnol., 5, 159-164.
Keywords: Cell-plastics; Green Alga; Chlamydomonas reinhardtii; Polybutylene Succinate (PBS); Biodegradable
Strain(s): 2239 
DOI: 10.11648.j.ijmb.20200504.11
Nakanishi, A., Iritani, K., Sakihama, Y., Watanabe, M., Mochiduki, A., Tsuruta, A., Sakamoto, S., Ota, A. 2021 Fabrication and biodegradability of starch cell-plastics as recyclable resources. Appl. Sci., 11, 847 (article ID).
Keywords: cell-plastics; biodegradability; unicellular green alga; green plastics
Strain(s): 2235 
DOI: 10.3390/app11020847
Nakanishi, A., Iritani, K., Tsuruta, A., Yamamoto, N., Watanabe, M., Ozawa, N., Watanabe, M., Zhang, K., Tokudome, A. 2022 Fabrication of cell plastics composed only of unicellular green alga Chlamydomonas reinhardtii as a raw material. Photosynth. Res., 106, 4459–4468.
Keywords: Biomass plastics; Cell plastics; Carbon recycling; Green algae; Chlamydomonas reinhardtii; Intracellular contents
Strain(s): 2235 
PubMed: 35676378
DOI: 10.1007/s00253-022-12000-2
Nakanishi, A., Nemoto, S., Yamamoto, N., Iritani, K., Watanabe, M. 2023 Identification of cell-attachment factors derived from green algal cells disrupted by sonication in fabrication of cell plastics. Bioengineering-Basel, 10, 893 (article ID).
Keywords: cell plastics; unicellular green algae; attachment factors in matrices; proteomics
Strain(s): 2235 
PubMed: 37627778
DOI: 10.3390/bioengineering10080893
Nakanishi, K., Deuchi, K., Kuwano, K. 2012 Cryopreservation of four valuable strains of microalgae, including viability and characteristics during 15 years of cryostorage. J. Appl. Phycol., 24, 1381-1385.
Keywords: Cryopreservation; Cryoprotectant; Chlorella vulgaris; Nannochloropsis oculata; Tetraselmis tetrathele; Chlorophyll
Strain(s): 21452170 
DOI: 10.1007/s10811-012-9790-8
Nakanishi, K., Karube, I., Hiroshi, S., Uchida, A., Ishida, Y. 1996 Detection of the red tide-causing plankton Chattonella marina using a piezoelectric immunosensor. Anal. Chim. Acta, 325, 73-80.
Keywords: red tide; Chattonella marina; monoclonal antibody; piezoelectric sensors
Strain(s): 121 
DOI: 10.1016/0003-2670(96)00006-2
Nakano, S., Chang, K.-H., Shijima, A., Miyamoto, H., Sato, Y., Noto, Y., Ha, J.-Y., Sakamoto, M. 2014 A usage of CO2 hydrate: Convenient method to increase CO2 concentration in culturing algae. Bioresour. Technol., 172, 444-448.
Keywords: CO 2; Algal culture; Pseudokirchneriella; Population growth
Strain(s): 35 
PubMed: 25263943
DOI: 10.1016/j.biortech.2014.09.019
Nakano, T. & Isagi, Y. 1987 Dictyochloropsis irregularis sp. nov. (Chlorococcales, Chloro-phyceae) isolated from the surface of bark Phycologia, 26, 222-227.
Strain(s): 378 
DOI: 10.2216/i0031-8884-26-2-222.1
Nakashima, T., Miyazaki, Y., Matsuyama, Y., Muraoka, W., Yamaguchi, K., Oda, T. 2006 Producing mechanism of an algicidal compound against red tide phytoplankton in a marine bacterium γ-proteobacterium. Appl. Microbiol. Biotechnol., 73, 684-690.
Keywords: Algal activity; Harmful algal bloom; Prodigiosin; γ-proteobacterium; Homoserine lactone
Strain(s): 6 
PubMed: 16850298
DOI: 10.1007/s00253-006-0507-2
Nakashima, Y., Egami, Y., Kimura, M., Wakimoto, T. 2016 Metagenomic analysis of the sponge Discodermia reveals the production of the cyanobacterial natural product kasumigamide by ‘Entotheonella’. PLoS One, 11, e0164468 (article ID).
Strain(s): 87 
PubMed: 27732651
DOI: 10.1371/journal.pone.0164468
Nakasugi, K., Alexova, R., Svenson, C. J., Neilan, B. A. 2007 Functional Analysis of PilT from the Toxic Cyanobacterium Microcystis aeruginosa PCC 7806. J. Bacteriol., 189, 1689-1697.
Strain(s): 102 
PubMed: 17172325
DOI: 10.1128/JB.01640-06
Nakayama, T., Ishii, E., Kanazawa, H. 1987 The study on the isolation and culture of the protoplast from heterothallic Closterium. J. Fac. Sci., Hokkaido Univ., Ser. V (Bot.), 14, 95-114.
Strain(s): 6465 
Nakayama, T., Marin, B., Kranz, H. D., Surek, B., Huss, V. A. R., Inouye, I., Melkonian, M. 1998 The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences. Protist, 149, 367-380.
Strain(s): 221251 
DOI: 10.1016/S1434-4610(98)70043-4
Nakayama, T., Nakamura, A., Yokoyama, A., Shiratori, T., Inouye, I., Ishida, K-I. 2015 Taxonomic study of a new eustigmatophycean alga, Vacuoliviride crystalliferum gen. et so. nov. J. Plant Res., 128, 249-257.
Keywords: Eustigmatophyceae; Phylogeny; Taxonomy; Vacuoliviride crystalliferum gen. et so. nov.
Strain(s): 2860 
PubMed: 25516501
DOI: 10.1007/s10265-014-0686-3
Nakayama, T., Suda, S., Kawachi, M., Inouye, I. 2007 Phylogeny and ultrastructure of Nephroselmis and Pseudoscourfieldia (Chlorophyta), including the description of Nephroselmis anterostigmatica sp. nov. and a proposal for the Nephroselmidales ord. nov. Phycologia, 46, 680-697.
Keywords: 18S rDNA; hair scales; Nephroselmidales ord nov.; Nephroselmis anterostigmatica sp. nov.; phylogeny; Prasinophyceae; Pseudoscourfieldia marina; taxonomy; ultrastructure
Strain(s): 252935 
DOI: 10.2216/04-25.1
Nakayama, T., Watanabe, S., Inouye, I. 1996 Phylogeny of wall-less green flagellates inferred from 18SrDNA sequence data. Phycol. Res., 44, 151-161.
Keywords: 18SrDNA; Chaetopeltidales; Chaetophorales; Chlorophyceae; Dunaliellales, Hafniomonas; molecular phylogeny; Oltmannsiellopsis; Polytomella
Strain(s): 360 
DOI: 10.1111/j.1440-1835.1996.tb00044.x
Nakayama, T., Yoshida, M., Noël, M.-H., Kawachi, M., Inouye, I. 2005 Ultrastructure and phylogenetic position of Chrysoculter rhomboideus gen. et sp.nov. (Prymnesiophyceae), a new flagellate haptophyte from Japanese coastal waters. Phycologia, 44, 369-383.
Strain(s): 1874 
DOI: 10.2216/0031-8884(2005)44[369:UAPPOC]2.0.CO;2
Nakazawa, A. & Nishii, I. 2012 Amidic and acetonic cryoprotectants improve cryopreservation of volvocine green algae. CryoLetters, 33, 201-212.
Keywords: cryopreservation; dimethylformamide; hydroxyacetone; Volvocaceae; Volvox; Chlamydomonas
Strain(s): 4184685455645747177217287297307311331136117102236 
PubMed: 22825787
Nakazawa, A. & Nozaki, H. 2000 Morphology and asexual reproduction of Vitreochlamys aulata (Volvocales, Chlorophyceae). J. Jpn. Bot., 75, 42-46.
Keywords: asexual reproduction; Chlorophyceae; morphology; Sphaerellopsis; Vitreochlamys aulata
Strain(s): 875 
Nakazawa, A. & Nozaki, H. 2004 Phylogenetic analysis of the Tetrasporalean genus Asterococcus (Chlorophyceae) based on 18S ribosomal RNA gene sequences. J. Jpn. Bot., 79, 255-261.
Keywords: 18S rRNA gene; Asterococcus; Palmellopsidaceae; phylogeny; Tetrasporales
Strain(s): 257656 
Nakazawa, A., Krienitz, L., Nozaki, H. 2001 Taxonomy of the unicellular green algal genus Vitreochlamys (Volvocales), based on comparative morphology of cultured material. Eur. J. Phycol., 36, 113-128.
Keywords: Chlorophyta; comparative morphology; rbcL (large subunit of Rubisco, ribulose-1,5-bisphosphate carboxylase/oxygenase); Sphaerellopsis; taxonomy; ultrastructure; Vitreochlamys; Vitreochlamys pinguis; Volvocales
Strain(s): 875876877878879880881882883 
DOI: 10.1017/S0967026201003183
Nakazawa, A., Yamada, T., Nozaki, H. 2004 Taxonomic study of Asterococcus (Chlorophyceae) based on comparative morphology and rbcL gene sequences. Phycologia, 43, 711-721.
Strain(s): 1331 
DOI: 10.2216/i0031-8884-43-6-711.1
Naknaen, A., Ratsameepakai, W., Suttinun, O., Sukpondma, Y., Khan, E., Pomwised, R. 2021 Microcystis sp. co-producing microcystin and saxitoxin from Songkhla Lake Basin, Thailand. Toxins, 13, 631 (article ID).
Keywords: Songkhla Lake Basin; Microcystis; extracellular polymeric substances; microcystins; saxitoxin
Strain(s): 843 
PubMed: 34564635
DOI: 10.3390/toxins13090631
Naohara, T. & Ishikawa, H. 1975 Assay of the activity of herbicides using Chlorella. Zassô-Kenkyû, 20, 82-86 (in Japanese with English summary).
Strain(s): 226 
Nara, M., Shiraiwa, Y., Hirokawa, T. 1989 Changes in the carbonic anhydrase activity and the rate of photosynthetic O2 evolution during the cell cycle of Chlorella ellipsoidea C-27. Plant Cell Physiol., 30, 267-275.
Keywords: carbonic anhydrase; cell cycle; Chlorella; CO2 concentration; photosynthesis; synchronous culture
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a077739
Natsuike, M., Endo, Y., Ito, H., Miyamoto, M., Yoshimura, C., Fujii, M. 2020 Iron uptake kinetics by coastal micro- and macro-algae in relation to riverine and coastal organic matter. Estuar. Coast. Shelf Sci., 235, 106580 (article ID).
Keywords: Iron; Organic matter; Emission excitation matrix (EEM); Coastal waters; Fulvic acid
Strain(s): 323 
DOI: 10.1016/j.ecss.2019.106580
Nazifi, E., Wada, N., Asano, T., Nishiuchi, T., Iwamuro, Y., Chinaka, S., Matsugo, S., Sakamoto, T. 2015 Characterization of the chemical diversity of glycosylated mycosporine-like amino acids in the terrestrial cyanobacterium Nostoc commune. J. Photochem. Photobiol. B-Biol., 142, 154-168.
Strain(s): 25383989 
PubMed: 25543549
DOI: 10.1016/j.jphotobiol.2014.12.008
Nazipova, A., Makshakova, O., Kozlova, L. 2023 The in silico characterization of monocotyledonous α-L-Arabinofuranosidases on the example of maize. Life-Basel, 13, 266 (article ID).
Keywords: α-L-arabinofuranosidase; arabinoxylan; maize; homology modeling; molecular docking
Strain(s): 2285 
PubMed: 36836625
DOI: 10.3390/life13020266
Nedelcu, A. M., Borza, T., Lee, R. W. 2006 A land-plant specific multigene family in the unicellular Mesostigma argues for its close relationship to Streptophyta. Mol. Biol. Evol., 23, 1011-1015.
Keywords: Mesostigma viride; land plant evolution; Streptophyta; histogenetic meristem; gene family
Strain(s): 296 
PubMed: 16476689
DOI: 10.1093/molbev/msj108
Nef, C., Madoui, M., Pelletier, É., Bowler, C. 2022 Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros. PLoS. Biol., 20, e3001893 (article ID).
Strain(s): 3715 
PubMed: 36441816
DOI: 10.1371/journal.pbio.3001893
Neilan, B. A., Cox, P. T., Hawkins, P. R., Goodman, A. E. 1994 16S ribosomal RNA gene sequence and phylogeny of toxic Microcystis sp. (Cyanobacteria). DNA Seq., 4, 333-337.
Keywords: Cyanobacteria; Microcystis; 165 rRNA gene; DNA sequence; taxonomy; phylogeny
Strain(s): 89 
DOI: 10.3109/10425179409020861
Neilan, B. A., Dittmann, E., Rouhiainen, L., Bass, R. A., Schaub, V., Sivonen, K., Börner, T. 1999 Nonribosomal peptide synthesis and toxigenicity of Cyanobacteria. J. Bacteriol., 181, 4089-4097.
Strain(s): 19248199102107204 
PubMed: 10383979
DOI: 10.1128/JB.181.13.4089-4097.1999
Neilan, B. A., Hawkins, P. R., Cox, P. T., Goodman, A. E. 1994 Towards a molecular taxonomy for the bloom-forming cyanobacteria. Aust. J. Mar. Freshwater Res., 45, 869-873.
Keywords: 16S rRNA; PCR; Microcystis; Anabaena; DNA sequence
Strain(s): 417889102107111 
DOI: 10.1071/MF9940869
Neilan, B. A., Jacobs, D., Goodman, A. E. 1995 Genetic diversity and phylogeny of toxic cyanobacteria determined by DNA polymorphisms within the phycocyanin locus. Appl. Environ. Microbiol., 61, 3875-3883.
Strain(s): 244041447376788081878998102107111112204207298 
PubMed: 8526499
Nemjová, K., Neustupa, J., Šťastný, J., Škaloud, P., Veselá, J. 2011 Species concept and morphological differentiation of strains traditionally assigned to Micrasterias truncata. Phycol. Res., 59, 208-220.
Keywords: cryptic diversity; Desmidiales; geometric morphometrics Micrasterias truncata; small subunit rDNA; species concept; trnGUCC intron
Strain(s): 783784 
DOI: 10.1111/j.1440-1835.2011.00619.x
Ng, F.-L., Phang, S.-M., Iwamoto, M., Manaka, T., Thong, C.-H., Shimosawa, K., Periasamy, V., Kumar, G. G., Yunus, K., Fisher, A. C. 2020 Algal biophotovoltaic devices: Surface potential studies. ACS Sustain. Chem. Eng., 8, 10511-10520.
Keywords: Algal biophotovoltaic device; Bioelectricity; Biotechnology; Surface potential; Algal biofilm
Strain(s): 642 
DOI: 10.1021/acssuschemeng.0c02831
Ngoc, N.M., Inoue, Y., Yokota, K. 2017 Ultrasonic extraction method for quantifying bioavailable phosphorus in particulate form. J. Environ. Chem. Eng., 5, 2498-2507.
Keywords: Particulate phosphorus; Ultrasonic extraction; NaOH extraction; Algal growth potential; Bioavailable phosphorus; Microcystis aeruginosa
Strain(s): 44 
DOI: 10.1016/j.jece.2017.04.047
Ngoc, N.M., Yokota, K., James, M., Inoue, Y. 2017 The estimation of bioavailable phosphorus in particulate forms by ultrasonic treatment. J. Environ. Chem. Eng., 31, 492-497.
Keywords: algal growth potential test; bioavailable phosphorus; Microcystis aeruginosa; particulate phosphorus; ultrasonic extraction
Strain(s): 44 
DOI: 10.1111/wej.12270
Nichol, B. E., Budd, K., Palmer, G. R., MacArthur, D. 1987 The mechanisms of fluoride toxicity and fluoride resistance in Synechococcus leopoliensis (Cyanophyceae). J. Phycol., 23, 535-541.
Keywords: acidification; bluegreen algae; Cyanophyta; fluoride; phytoplankton; tolerance; toxicity
Strain(s): 3277 
DOI: 10.1111/j.1529-8817.1987.tb04202.x
Nichols, P. D., Volkman, J. K., Hallegraeff, G. M., Blackburn, S. I. 1987 Sterols and fatty acids of the red tide flagellates Heterosigma akashiwo and Chattonella antiqua (Raphidophyceae). Phytochemistry, 26, 2537-2541.
Keywords: Heterosigma akashiwo; Chattonella antiqua; algae; Raphidophyceae; lipids; fatty acids; sterols; chemotaxonomy; red tides
Strain(s): 1 
DOI: 10.1016/S0031-9422(00)83871-6
Nihei, T. 1957 A phosphorylative process, accompanied by photochemical liberation of oxygen, occurring at the stage of nuclear division in Chlorella cell. II. J. Biochem., 44, 389-396.
Strain(s): 2170 
Nihei, T., Sasa, T., Miyachi, S., Suzuki, K., Tamiya, H. 1954 Change of photosynthetic activity of Chlorella cells during the course of their normal life cycle. Arch. Mikrobiol., 21, 156-166.
Strain(s): 2170 
PubMed: 14350639
Niiyama, Y. 1996 Morphology and systematics of Anabaena strains in National Science Museum. Jpn. J. Phycol. (Sôrui), 44, 1-8 (in Japanese with English summary).
Keywords: akinetes; algal strain; Anabaena; heterocytes; vegetative cells
Strain(s): 8088098108118128138148198208218228258268271639164016411652165316551670167116721673167716801695 
Niiyama, Y., Tuji, A., Takemoto, K., Ichise, S. 2016 Pseudanabaena foetida sp. nov. and P. subfoetida sp. nov. (Cyanophyta/ Cyanobacteria) producing 2–methylisoborneol from Japan. Fottea, 16, 1-11.
Keywords: Lake Biwa; Lake Kasumigaura; 2–methylisoborneol (2–MIB); Phormidium tenue; Pseudanabaena foetida; Pseudanabaena subfoetida; Pseudanabaenaceae; PTB; PTG; 16S rRNA gene
Strain(s): 4059 
DOI: 10.5507/fot.2016.006
Niiyama, Y., Tuji, A., Tsujimura, S. 2011 Umezakia natans M.WATAN. does not belong to Stigonemataceae but to Nostocaceae. Fottea, 11, 163-169.
Keywords: Anabaena bergii; Aphanizomenon ovalisporum; Nostocaceae; Stigonemataceae; Umezakia natans; 16S rDNA
Strain(s): 2665 
DOI: 10.5507/FOT.2011.016
Niki, T., Kunugi, M., Otsuki, A. 2000 DMSP-lyase activity in five marine phytoplankton species: its potential importance in DMS production. Mar. Biol., 136, 759-764.
Strain(s): 67353 
DOI: 10.1007/s0022799002
Niki, T., Shimizu, M., Fujishiro, A., Kinoshita, J. 2007 Effects of salinity downshock on dimethylsulfide production. J. Oceanogr., 63, 873-877.
Keywords: DMS; DMSP; DMSP lyase activity; salinity
Strain(s): 7 
DOI: 10.1007/s10872-007-0074-x
Nikulin, V. Y., Nikulin, A. Y., Gontcharov, A. A., Bagmet, V. B., Abdullin, S. R. 2023 Oogamochlamys kurilensis sp. nov. (Chlorophyta, Volvocales) from the soils of Iturup Island (Sakhalin Region, Russia). Plants-Basel, 12, 3350 (article ID).
Keywords: biflagellate green alga; Oogamochlamys; new species; SSU rDNA; ITS rDNA secondary structure; morphological characteristics; life cycle; temperate monsoon climate zone
Strain(s): 171617202209221022332240229423172318232035723760 
PubMed: 37836090
DOI: 10.3390/plants12193350
Ninomiya, K., Ogino, C., Kawabata, S., Kitamura, K., Maki, T., Hasegawa, H., Shimizu, N. 2013 Ultrasonic inactivation of Microcystis aeruginosa in the presence of TiO2 particles. J. Biosci. Bioeng., 116, 214-218.
Keywords: Ultrasaound; Titanium dioxide; Disinfection; Microcystis aeruginosa; Hydroxyl radicals
Strain(s): 44 
PubMed: 23567151
DOI: 10.1016/j.jbiosc.2013.02.006
Nishi, K. 2023 Development of advanced light-tolerant microalgae-nitrifying bacteria consortia for ammonia removal under strong light irradiation using light-shielding hydrogel. PhD thesis, Soka University, Japan, 94 pp.
Strain(s): 2173 
Nishi, K., Akizuki, S., Toda, T., Matsuyama, T., Ida, J. 2022 Advanced light-tolerant microalgae-nitrifying bacteria consortia for stable ammonia removal under strong light irradiation using light-shielding hydrogel. Chemosphere, 297, 134252 (article ID).
Keywords: Microalgae–nitrifying bacteria consortia; Photoinhibition; Light-shielding; Free ammonia; Immobilisation
Strain(s): 2173 
PubMed: 35271892
DOI: 10.1016/j.chemosphere.2022.134252
Nishibe, Y., Kawabata, Z., Nakano, S. 2002 Grazing on Microcystis aeruginosa by the heterotrophic flagellate Collodictyon triciliatum in a hypertrophic pond. Aquat. Microb. Ecol., 29, 173-179.
Keywords: Microcystis aeruginosa; heterotrophic flagellate; digestion; grazing rate
Strain(s): 298 
DOI: 10.3354/ame029173
Nishibori, N., Niitsu, M., Fujihara, S., Sagara, T., Nishio, S., Imai, I. 2009 Occurrence of the polyamines caldopentamine and homocaldopentamine in axenic cultures of the red tide flagellates Chattonella antiqua and Heterosigma akashiwo (Raphidophyceae). FEMS Microbiol. Lett., 298, 74-78.
Keywords: caldopentamine; homocaldopentamine; Chattonella antiqua; Heterosigma akashiwo
Strain(s): 16 
DOI: 10.1111/j.1574-6968.2009.01701.x
Nishida, K., Takahara M., Miyagishima S., Kuroiwa H., Matsuzaki M., Kuroiwa, T. 2003 Dynamic recruitment of dynamin for final mitochondrial severance in a red alga. Proc. Nati. Acad. Sci. U. S. A., 100, 2146-2151.
Strain(s): 3377 
PubMed: 12566569
DOI: 10.1073/pnas.0436886100
Nishida, K., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2005 Cell cycle-regulated, microtubule-independent organelle division in Cyanidioschyzon merolae. Mol. Biol. Cell, 16, 2493-2502.
Strain(s): 3377 
PubMed: 15772156
DOI: 10.1091/mbc.E05-01-0068
Nishida, K., Yagisawa, F., Kuroiwa, H., Yoshida, Y., Kuroiwa, T. 2007 WD40 protein Mda1 is purified with Dnm1 and forms a dividing ring for mitochondria before Dnm1 in Cyanidioschyzon merolae. Proc. Nati. Acad. Sci. U. S. A., 104, 4736-4741.
Strain(s): 3377 
PubMed: 17360593
DOI: 10.1073/pnas.0609364104
Nishida, T., Tsutsumi, Y., Kemi, M., Haneda, T., Okamura, H. 1999 Decolorization of anthraquinone dyes by white-rot fungi and its related enzymes. J. Jpn. Soc. Wat. Environ., 22, 465-471 (in Japanese with English summary).
Keywords: anthraquinone dye; white-rot fungi; laccase; decolorization; toxicity
Strain(s): 35 
Nishihara, H., Miwa, H., Watanabe, M., Nagashima, M., Yagi, O., Takamura, Y. 1997 Random amplified polymorphic DNA (RAPD) analyses for discriminating genotypes of Microcystis cyanobacteria. Biosci. Biotechnol. Biochem., 61, 1067-1072.
Keywords: RAPD analysis; DNA polymorphism; Microcystis; cyanobacterium; allozyme genotype
Strain(s): 106110671068107610771090109111051122113311421164 
PubMed: 9255968
DOI: 10.1271/bbb.61.1067
Nishiida, K., Misumi, O., Yagisawa, F., Kuroiwa, H., Nagata, T., Kuroiwa, T. 2004 Triple Immunofluorescent Labeling of FtsZ, Dynamin, and EF-Tu revealed a loose association between the inner and outer membrane mitochondrial division machinery in the red alga Cyanidioschyzon merolae. J. Histochem. Cytochem., 52, 843-849.
Keywords: FtsZ; dynamin; elongation factor; Tu; mitochondrial division; Cyanidioschyzon merolae; Alexa; triple immunofluorescence
Strain(s): 3377 
PubMed: 15208351
DOI: 10.1369/jhc.4C6315.2004
Nishimura, M. & Huzisige, H. 1959 Studies on the chlorophyll formation in Euglena gracilis with special reference to the action spectrum of the process. J. Biochem., 46, 225-234.
Strain(s): 49 
Nishimura, T., Hariganeya, N., Tawong, W., Sakanari, H., Yamaguchi, H., Adachi, M. 2016 Quantitative PCR assay for detection and enumeration of ciguatera-causing dinoflagellate Gambierdiscus spp. (Gonyaulacales) in coastal areas of Japan. Harmful Algae, 52, 11-22.
Keywords: Ciguatera fish poisoning; Dinoflagellate; Gambierdiscus; Japan: Quantitative PCR assay
Strain(s): 411841194120 
PubMed: 28073467
DOI: 10.1016/j.hal.2015.11.018
Nishimura, T., Pachpande, R. R., Iwamura, T. 1988 A heterotrophic synchlonous culture of Chlorella. Cell Struct. Funct., 13, 207-215.
Strain(s): 2170 
Nishimura, T., Sato, S., Tawong, W., Sakanari, H., Uehara, K., Shah, M.M., Suda, S., Yasumoto, T., Taira, Y., Yamaguchi, H., Adachi, M. 2013 Genetic diversity and distribution of the ciguatera-causing dinoflagellate Gambierdiscus spp. (Dinophyceae) in coastal areas of Japan. PLoS One, 8, e60882 (article ID).
Strain(s): 411841194120 
PubMed: 23593339
DOI: 10.1371/journal.pone.0060882
Nishimura, T., Sato, S., Tawong, W., Sakanari, H., Yamaguchi, H., Adachi, M. 2014 Morphology of Gambierdiscus scabrosus sp. nov. (Gonyaulacales): a new epiphytic toxic dinoflagellate from coastal areas of Japan. J. Phycol., 50, 506-514.
Keywords: ciguatera fish poisoning; epiphytic; dinoflagellate; Gambierdiscus scabrosus; Japan; LM; morphology; SEM; taxonomy
Strain(s): 4118 
PubMed: 26988323
DOI: 10.1111/jpy.12175
Nishimura, T., Uchida, H., Noguchi, R., Oikawa, H., Suzuki, T., Funaki, H., Ihara, C., Hagino, K., Arimitsu, S., Tanii, Y., Abe, S., Hashimoto, K., Mimura, K., Tanaka, K., Yanagida, I., Adachi, M. 2020 Abundance of the benthic dinoflagellate Prorocentrum and the diversity, distribution, and diarrhetic shellfish toxin production of Prorocentrum lima complex and P. caipirignum in Japan. Harmful Algae, 96, 101687 (article ID).
Keywords: Dinoflagellate; Dinophysistoxin-1; Okadaic acid; Phylogeny; Prorocentrum caipirignum; Prorocentrum lima complex
Strain(s): 4554455545574558 
PubMed: 32560839
DOI: 10.1016/j.hal.2019.101687
Nishimura, Y. 2016 Diversity and evolution of protist mitochondria : introns, gene content and genome architecture. PhD thesis, University of Tsukuba, Japan, 75 pp.
Strain(s): 13331335 
Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2012 Separate origins of group I introns in two mitochondrial genes of the katablepharid Leucocryptos marina. PLoS One, 7, e37307 (article ID).
Strain(s): 13331335 
PubMed: 22606358
DOI: 10.1371/journal.pone.0037307
Nishimura, Y., Kamikawa, R., Hashimoto, T., Inagaki, Y. 2014 An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333. Mobile Genetic Elements, 4, e29384 (article ID).
Keywords: group II intron; mitochondrial genome; intron encoded protein; lateral intron transfer; Chrysochromulina sp.
Strain(s): 1333 
PubMed: 25054084
DOI: 10.4161/mge.29384
Nishimura. Y., Kume, K., Sonehara, K., Tanifuji, G., Shiratori, T., Ishida, K-I., Hashimoto, T., Inagaki, Y., Ohkuma, M. 2020 Mitochondrial genomes of Hemiarma marina and Leucocryptos marina revised the evolution of cytochrome c maturation in Cryptista. Front. Ecol. Evol., 8, 140 (article ID).
Keywords: kathablepharids; cytochrome c maturation; goniomonads; cryptophytes; holocytochrome c synthase
Strain(s): 1335 
DOI: 10.3389/fevo.2020.00140
Nishitani, G., Yamamoto, K., Nakajima, M., Shibata, Y., Sato-Okoshi, W., Yamaguchi, M. 2021 A novel parasite strain of Amoebophrya sp. infecting the toxic dinoflagellate Alexandrium catenella (Group I) and its effect on the host bloom in Osaka Bay, Japan. Harmful Algae, 110, 102123 (article ID).
Keywords: Alexandrium catenella (Group I); Amoebophrya; Dinoflagellate; Parasite; 18S rDNA; 28S rDNA
Strain(s): 2373597 
PubMed: 34887003
DOI: 10.1016/j.hal.2021.102123
Nitta, N. et al. 2020 Raman image-activated cell sorting. Nat. Commun., 11, 3452 (article ID).
Strain(s): 48229324633640 
PubMed: 32651381
DOI: 10.1038/s41467-020-17285-3
Niu, C., Du, G., Li, R., Wang, C. 2020 Interactive effects of increased temperature, elevated pCO2 and different nitrogen sources on the coccolithophore Gephyrocapsaoceanica. PLoS One, 15, e0235755 (article ID).
Strain(s): 1318 
PubMed: 32649709
DOI: 10.1371/journal.pone.0235755
Niyommaneerat, W., Nakajima, F., Tobino, T., Yamamoto, K. 2017 Development of a chronic sediment toxicity test using the benthic ostracod Heterocypris incongruens and their application to toxicity assessments of urban road dust. Ecotox. Environ. Safe., 143, 266-274.
Keywords: Chronic sediment toxicity test; Heterocypris incongruens; Test repeatability; Reproduction; Urban road dust
Strain(s): 94 
PubMed: 28551584
DOI: 10.1016/j.ecoenv.2017.05.011
Nobusawa, T., Hori, K., Mori, H., Kurokawa, K., Ohta, H. 2017 Differently localized lysophosphatidic acid acyltransferasescrucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis. Plant J., 90, 547–559.
Keywords: Nannochloropsis; triacylglycerol (TAG); biofuels; lysophosphatidic acid acyltransferase (LPAT); lipid droplets
Strain(s): 2145 
PubMed: 28218992
DOI: 10.1111/tpj.13512
Nobusawa, T., Yamakawa-Ayukawa, K., Saito, F., Nomura, S., Takami, A., Ohta, H. 2019 A homolog of Arabidopsis SDP1 lipase in Nannochloropsis is involved in degradation of de novo-synthesized triacylglycerols in the endoplasmic reticulum. Biochim. Biophys. Acta Mol. Cell Biol. Lipids, 1864, 1185-1193.
Keywords: Nannochloropsis; Lipase; Triacylglycerol; SDP1
Strain(s): 2145 
PubMed: 31152796
DOI: 10.1016/j.bbalip.2019.05.013
Noël, M.-H., Kawachi, M., Inouye, I. 2004 Induced dimorphic life cycle of a coccolithophorid, Calyptrosphaera sphaeroidea (Prymnesiophyceae, Haptophyta). J. Phycol., 40, 112-129.
Strain(s): 99712121213 
DOI: 10.1046/j.1529-8817.2004.03053.x
Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M. 2016 Growth promotion of Spirulina by steelmaking slag: application of solubility diagram to understand its mechanism. AMB Express, 6, 96 (article ID).
Keywords: Steelmaking slag; Growth promotion; Spirulina; Solubility diagram; Oxidative stress
Strain(s): 39 
PubMed: 27730571
DOI: 10.1186/s13568-016-0270-4
Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M. 2017 Growth promotion effect of alginate oligosaccharides on Spirulina analyzed by repeated batch culture. J. Jpn. Inst. Energy, 96, 352-356.
Keywords: Alginate oligosaccharides; Anti-oxidation; Arthrospira (Spirulina) platensis; Growth promotion; Phycocyanin; Repeated batch culture
Strain(s): 39 
DOI: 10.3775/jie.96.352
Noguchi, M., Aizawa, R., Nakazawa, D., Hakumura, Y., Furuhashi, Y., Yang, S., Ninomiya, K.,Takahashi, K., Honda, R. 2021 Application of real treated wastewater to starch production by microalgae: Potential effect of nutrients and microbial contamination. Biochem. Eng. J., 169, 107973 (article ID).
Keywords: Biorefinery; Chlorella vulgaris; Chlorination; Microbial contamination; Municipal wastewater; Starch (carbohydrate) production
Strain(s): 215121592170 
DOI: 10.1016/j.bej.2021.107973
Noguchi, M., Hashimoto, C., Honda, R., Teraoka, Y., Yang, S., Ninomiya, K., Takahashi, K. 2017 Utilization of anaerobic digestion supernatant as a nutrient source in microalgal biomass production with a membrane photobioreactor. J. Water Environ. Technol., 15, 199-206.
Keywords: anaerobic digestion supernatant; Chlorella vulgaris; membrane photobioreactor (MPBR)
Strain(s): 2170 
DOI: 10.2965/jwet.17-006
Noike, T. & Souma, Y. 1993 Survey on the influence factors of eutrophication of lakes and the necessity of advanced waste treatment [Koshô no fu-eiyôka no kanôsei to kôdo shori no hitsuyôsei ni kansuru chôsa]. J. Jpn. Soc. Sewage Works [Gesuidô-Kyôkai Shi], 30, 38-44 (in Japanese).
Strain(s): 35 
Nojiri, T., Fujii, T., Sekimoto, H. 1995 Purification and characterization of a novel sex pheromone that induces the release of another sex pheromone during sexual reproduction of the heterothallic Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 36, 79-84.
Keywords: Closterium; conjugation (Closterium); protoplast-release-inducing protein; pheromone
Strain(s): 6768 
DOI: 10.1093/oxfordjournals.pcp.a078747
Nomaki, H., Rastelli, E., ogawa, N. O., Matsui, Y., Tsuchiya, M., Manea, E., Corinaldesi, C., Hirai, M., Ohkouchi, N., Danovaro, R., Nunoura, T., Amaro, T. 2021 In situ experimental evidences for responses of abyssal benthic biota to shifts in phytodetritus compositions linked to global climate change. Glob. Change Biol., 27, 6139-6155.
Keywords: abyssal plain; benthic ecosystems; climate change; ecosystem functioning; isotope tracer; primary producers
Strain(s): 377986 
PubMed: 34523189
DOI: 10.1111/gcb.15882
Nomura, M. & Ishida, K-I. 2016 Fine-structural observations on siliceous scale production and shell assembly in the testate amoeba Paulinella chromatophora. Protist, 167, 303-318.
Keywords: Paulinella chromatophora; testate amoebae; siliceous scale production; silica deposition vesicle; shell construction; ultrastructure
Strain(s): 4060 
PubMed: 27348459
DOI: 10.1016/j.protis.2016.05.002
Nomura, M., Atsuji, K., Hirose, K., Shiba, K., Yanase, R., Nakayama, T., Ishida, K-I., Inaba, K. 2019 Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae. Biol. Open, 8, bio036590 (article ID).
Keywords: Haptophyte; Chrysochromulina; Haptonema; Microtubule; Paclitaxel; Curvature
Strain(s): 4122 
PubMed: 30700402
DOI: 10.1242/bio.036590
Nomura, M., Kamikawa, R., Ishida, K-I. 2020 Fine structureo observation of feeding behavior, Nephroselmis spp.-derived chloroplast enlargement, and mitotic processes in the Katablepharid Hatena arenicola. Protist, 171, 125714 (article ID).
Keywords: Hatena arenicola; Nephroselmis; kleptochloroplastidy; feeding behavior; mitosis; ultrastructure
Strain(s): 1417 
PubMed: 32088560
DOI: 10.1016/j.protis.2020.125714
Nomura, M., Nakayama, T., Ishida, K-I. 2014 Detailed process of shell construction in the photosynthetic testate amoeba Paulinella chromatophora (Euglyphid, Rhizaria). J. Eucaryot. Microbiol., 61, 317-321.
Keywords: cell covering; LysoTracker; protist; siliceous; scale; time-lapse video microscopy
Strain(s): 4060 
PubMed: 24444111
DOI: 10.1111/jeu.12102
Nomura, T., Inoue, K., Uehara-Yamaguchi, Y., Yamada, K., Iwata, O., Suzuki, K., Mochida, K. 2019 Highly efficient transgene‐free targeted mutagenesis and single‐stranded oligodeoxynucleotide‐mediated precise knock‐in in the industrial microalga Euglena gracilis using Cas9 ribonucleoproteins. Plant Biotechnol. J., 17, 2032-2034.
Keywords: Euglena gracilis; Microalgae; genome editing; ribonucleoproteins; CRISPR/Cas9; transgene free; knock-in; single-stranded oligodeoxynucleotides
Strain(s): 48 
PubMed: 31131534
DOI: 10.1111/pbi.13174
Not, F., Simon, N., Biegala, I. C., Vaulot, D. 2002 Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition. Aquat. Microb. Ecol., 28, 157-166.
Keywords: Fluorescent in situ hybridization; Tyramide signal amplification; Picoplankton; Eukaryotes; Coastal waters; Diversity
Strain(s): 26732682 
DOI: 10.3354/ame028157
Nowack, E. C. M., Podola, B., Melkonian, M. 2005 The 96-well twin-layer system: a novel approach in the cultivation of microalgae. Protist, 156, 239-251.
Keywords: cultivation; culture collections; cell immobilisation; microalgae; microtiter plates; filter plates
Strain(s): 255483485 
PubMed: 16171190
DOI: 10.1016/j.protis.2005.04.003
Nowruzi, B. & MShalygin, S. 2021 Multiple phylogenies reveal a true taxonomic position of Dulcicalothrix alborzica sp. nov. (Nostocales, Cyanobacteria). Fottea, 21, 235-246.
Keywords: new species; polyphasic approach; rbcL; rpoC1; 16S–23S ITS
Strain(s): 4105 
DOI: 10.5507/fot.2021.008
Nozaki, H. 1981 The life history of Japanese Pandorina unicocca (Chlorophyta, Volvocales). J. Jpn. Bot., 56, 65-72, pls. 1-2.
Strain(s): 666667 
Nozaki, H. 1982 Morphology and reproduction of Japanese Volvulina steinii (Chlorophyta, Volvocales). J. Jpn. Bot., 57, 105-113, pls. 3-4.
Strain(s): 545546896897898 
Nozaki, H. 1983 Morphology and taxonomy of two species of Astrephomene (Chlorophyta, Volvocales) in Japan. J. Jpn. Bot., 58, 345-352, pls. 11-13.
Strain(s): 418419564565 
Nozaki, H. 1983 Sexual reproduction in Eudorina elegans (Chlorophyta, Volvocales). Bot. Mag. Tokyo, 96, 103-110.
Keywords: anisogamous conjugation; Chlorophyta; Eudorina elegans; gone colony formation; sexual reproduction; Volvocales
Strain(s): 456457 
DOI: 10.1007/BF02491095
Nozaki, H. 1984 Volvox aureus Ehrenberg var. aureus. In Photomicrog. Fresh-w. Alg. [Tansui Sôrui Syashinsyû] Vol. 1, Eds. by Yamagishi, T. & Akiyama, M., Uchida Rokakuho, Tokyo, pp. 97 (in Japanese & English).
Strain(s): 541542 
Nozaki, H. 1984 Newly found facets in the asexual and sexual reproduction of Gonium pectorale (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 32, 130-133.
Keywords: asexual reproduction; Chlorophyta; flagellar emission; Gonium pectorale; isogamous conjugation; mating papilla; sexual reproduction; Volvocales
Strain(s): 468469 
Nozaki, H. 1986 Notes on microalgae in Japan (10). Eudorina illinoisensis (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 34, 144 (in Japanese with English title).
Strain(s): 459460 
Nozaki, H. 1986 Notes on microalgae in Japan (9). Basichlamys sacculifera (Chlorophyta, Volvocales). Jpn. J. Phycol. (Sôrui), 34, 143 (in Japanese with English title).
Strain(s): 566 
Nozaki, H. 1986 Sexual reproduction in Gonium sociale (Chlorophyta, Volvocales). Phycologia, 25, 29-35.
Strain(s): 571 
DOI: 10.2216/i0031-8884-25-1-29.1
Nozaki, H. 1986 Zygote germination in Eudorina elegans var. synoica (Chlorophyta, Volvocales). J. Jpn. Bot., 61, 316-320, pl. 8.
Strain(s): 458 
Nozaki, H. 1988 Colonial Volvocales (Chlorophyta) from Kathmandu, Nepal. In Cryptogams of the Himalayas. Vol. 1. The Kathmandu Valley, Eds. by Watanabe, M. & Malla, S. B., Department of Botany, National Science Museum, Tsukuba, pp. 39-46.
Strain(s): 568574575 
Nozaki, H. 1988 Morphology, sexual reproduction and taxonomy of Volvox carteri f. kawasakiensis f. nov. (Chlorophyta) from Japan. Phycologia, 27, 209-220.
Strain(s): 580581732733 
DOI: 10.2216/i0031-8884-27-2-209.1
Nozaki, H. 1989 Morphological variation and reproduction in Gonium viridistellatum (Volvocales, Chlorophyta). Phycologia, 28, 77-88.
Strain(s): 288289290654655 
DOI: 10.2216/i0031-8884-28-1-77.1
Nozaki, H. 1990 Colonial Volvocales (Chlorophyta) from Central and East Nepal. In Cryptogams of the Himalayas. Vol. 2. Central and Eastern Nepal, Eds. by Watanabe, M. & Malla, S. B., Department of Botany, National Science Museum, Tsukuba, pp. 41-47.
Strain(s): 584585 
Nozaki, H. 1990 Ultrastructure of the extra-cellular matrix of Gonium (Volvocales, Chlorophyta). Phycologia, 29, 1-8.
Strain(s): 468651885 
DOI: 10.2216/i0031-8884-29-1-1.1
Nozaki, H. 1993 Asexual and sexual reproduction in Gonium quadratum (Chlorophyta) with a discussion of phylogenetic relationships within the Goniaceae. J. Phycol., 29, 369-376.
Keywords: asexual reproduction; Chlorophyta; Goniaceae; Gonium quadratum; mating papilla; phylogeny; sexual reproduction; zygote germination
Strain(s): 651652653 
DOI: 10.1111/j.0022-3646.1993.00369.x
Nozaki, H. 1993 Morphology, reproduction and taxonomy of Characiochloris sasae sp. nov. (Chlorophyta) from Japan. Phycologia, 32, 129-135.
Strain(s): 567637638 
DOI: 10.2216/i0031-8884-32-2-129.1
Nozaki, H. 1994 Aplanogamous sexual reproduction in Carteria eugametos (Volvocales, Chlorophyta). Eur. J. Phycol., 29, 135-139.
Keywords: aplanogamy; Carteria eugametos; Chlorophyta; morphology; sexual reproduction; Volvocales
Strain(s): 631632633 
DOI: 10.1080/09670269400650581
Nozaki, H. 1994 Unequal flagellar formation in Volvox (Volvocaceae, Chlorophyta). Phycologia, 33, 58-61.
Strain(s): 541732 
DOI: 10.2216/i0031-8884-33-1-58.1
Nozaki, H. 2003 Origin and evolution of the genera Pleodorina and Volvox (Volvocales). Biologia, Bratislava, 58, 425-431.
Keywords: colonial Volvocales; evolution; molecular phylogeny; Pleodorina; sexual reproduction; Volvox
Strain(s): 544 
Nozaki, H. 2008 Zygote germination in Pleodorina starrii (Volvocaceae, Chlorophyta). Biologia, 63, 778–780.
Keywords: Chlorophyta; Volvocales; Volvocaceae; Pleodorina starrii; morphology; zygote germination
Strain(s): 185218531854 
DOI: 10.2478/s11756-008-0098-8
Nozaki, H. & Coleman, A. W. 2011 A new species of Volvox sect. Merrillosphaera (Volvocaceae, Chlorophyceae) from Texas. J. Phycol., 47, 673-679.
Keywords: molecular phylogeny; morphology; taxonomy; Volvox ovalis sp. nov.; Volvox sect. Merrillosphaera
Strain(s): 2569 
PubMed: 27021996
DOI: 10.1111/j.1529-8817.2011.00975.x
Nozaki, H. & Ito, M. 1994 Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from cladistic analysis based on morphological data. J. Phycol., 30, 353-365.
Keywords: Chlorophyta; cladistic analysis; Goniaceae; morphological data; phylogeny; sexual reproduction; Tetrabaena; Tetrabaenaceae fam. nov.; Tetrabaena socialis comb. nov.; Volvocaceae
Strain(s): 456460541565571654 
DOI: 10.1111/j.0022-3646.1994.00353.x
Nozaki, H. & Kasaki, H. 1979 The sexual process of Japanese Pandorina morum Bory (Chlorophyta). J. Jpn. Bot., 54, 363-370, pl. 9.
Strain(s): 890 
Nozaki, H. & Krienitz, L. 2001 Morphology and phylogeny of Eudorina minodii (Chodat) Nozaki et Krienitz, comb. nov. (Volvocales, Chlorophyta) from Germany. Eur. J. Phycol., 36, 23-28.
Keywords: Eudorina minodii comb. nov.; molecular phylogeny; morphology; Pandorina minodii; taxonomy; Volvocales
Strain(s): 351546576717856 
DOI: 10.1080/09670260110001735158
Nozaki, H. & Kuroiwa, T. 1990 Volvulina compacta sp. nov. (Volvocaceae, Chlorophyta) from Nepal. Phycologia, 29, 410-417.
Strain(s): 582583 
DOI: 10.2216/i0031-8884-29-4-410.1
Nozaki, H. & Kuroiwa, T. 1991 Pandorina colemaniae sp. nov. (Volvocaceae, Chlorophyta) from Japan. Phycologia, 30, 449-457.
Strain(s): 572573 
DOI: 10.2216/i0031-8884-30-5-449.1
Nozaki, H. & Kuroiwa, T. 1991 Morphology and sexual reproduction of Gonium multicoccum (Volvocales, Chlorophyta) from Nepal. Phycologia, 30, 381-393.
Strain(s): 737885 
DOI: 10.2216/i0031-8884-30-5-381.1
Nozaki, H. & Kuroiwa, T. 1992 Ultrastructure of the extracellular matrix and taxonomy of Eudorina, Pleodorina and Yamagishiella gen. nov. (Volvocaceae, Chlorophyta). Phycologia, 31, 529-541.
Strain(s): 459666 
DOI: 10.2216/i0031-8884-31-6-529.1
Nozaki, H. & Ohtani, S. 1992 Gonium sociale (Volvocales, Chlorophyta) from Antarctica. Jpn. J. Phycol. (Sôrui), 40, 267-271.
Keywords: Antarctica; Chlorophyta; culture; Gonium sociale; morphology; Volvocales
Strain(s): 571691 
Nozaki, H., Aizawa, K., Watanabe, M. M. 1994 A taxomonic study of four species of Cartera (Volvocales, Chlorophyta) with cruciate anterior papillae, based on cultured material. Phycologia, 33, 239-247.
Strain(s): 421422423424425630632633634635636 
Nozaki, H., Aizawa, K., Watanabe, M. M. 1996 Re-examination of two NIES strains labeled Chlorogonium metamorphum (Volvocales, Chlorophyta) from Japan. Nova Hedwigia Beiheft, 112, 483-490.
Keywords: Chlorogonium; Chlorophyta; morphology; neotype strain; species identification; Volvocales
Strain(s): 123446 
Nozaki, H., Hara, Y., Kasaki, H. 1987 Light and electron microscopy of pyrenoids and species delimitation in Volvulina (Chlorophyta, Volvocaceae). J. Phycol., 23, 359-364.
Keywords: Chlorophyta; culture age; pyrenoid; pyrenoid development; taxonomy; ultrastructure; Volvocaceae; Volvulina pringsheimii; Volvulina steinii
Strain(s): 545896897898 
DOI: 10.1111/j.1529-8817.1987.tb04145.x
Nozaki, H., Iseki, M., Hasegawa, M., Misawa, K., Nakada, T., Sasaki, N., Watanabe, M. 2007 Phylogeny of primary photosynthetic eukaryotes as deduced from slowly evolving nuclear genes. Mol. Biol. Evol., 24, 1592-1595.
Keywords: eukaryote evolution; long branch attraction; phylogeny; plastid endosymbiosis; primary photosynthetic eukaryotes; taxon sampling
Strain(s): 547 
PubMed: 17488739
DOI: 10.1093/molbev/msm091
Nozaki, H., Ito, M., Sano, R., Uchida, H., Watanabe, M. M., Kuroiwa, T. 1995 Phylogenetic relationships within the colonial Volvocales (Chlorophyta) inferred from rbcL gene sequence data. J. Phycol., 31, 970-979.
Keywords: Chlorophyta; Goniaceae; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; Tetrabaenaceae; Volvocaceae
Strain(s): 418421456460541564566569571572574577653725731732734735737895 
DOI: 10.1111/j.0022-3646.1995.00970.x
Nozaki, H., Ito, M., Sano, R., Uchida, H., Watanabe, M. M., Takahashi, H., Kuroiwa, T. 1997 Phylogenetic analysis of Yamagishiella and Platydorina (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 272-278.
Keywords: Chlorophyta; Goniaceae; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; Platydorina; Volvocaceae; Yamagishiella
Strain(s): 582654666722724726728729730736884 
DOI: 10.1111/j.0022-3646.1997.00272.x
Nozaki, H., Ito, M., Uchida, H., Watanabe, M. M., Kuroiwa, T. 1997 Phylogenetic analysis of Eudorina species (Volvocaceae, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 859-863.
Keywords: Chlorophyta; Eudorina; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; molecular phylogeny; species delimitation; taxonomic species; Volvocaceae
Strain(s): 458568717718719720721723 
DOI: 10.1111/j.0022-3646.1997.00859.x
Nozaki, H., Ito, M., Watanabe, M. M., Kuroiwa, T. 1996 Ultrastructure of the vegetative colonies and systematic position of Basichlamys (Volvocales, Chlorophyta). Eur. J. Phycol., 31, 67- 72.
Keywords: Basichlamys sacculifera; Chlorophyta; cladistic analysis; phylogeny; Tetrabaenaceae; ultrastructure; Volvocales
Strain(s): 566 
DOI: 10.1080/09670269600651211a
Nozaki, H., Ito, M., Watanabe, M. M., Takano, H., Kuroiwa, T. 1997 Phylogenetic analysis of morphological species of Carteria (Volvocales, Chlorophyta) based on rbcL gene sequences. J. Phycol., 33, 864-867.
Keywords: Carteria; large subunit of ribulose-1,5-bisphosphate carboxylase / oxygenase (rbcL) gene; microalgae; molecular phylogeny; monophyly; natural systematics; species concepts; species taxonomy; Volvocales
Strain(s): 421422423424425428432630631632633634635636 
DOI: 10.1111/j.0022-3646.1997.00864.x
Nozaki, H., Kanesaki, Y., Matsuzaki, M., Hirooka, S. 2018 The 100%-complete nuclear and organellar genome sequences of the ultrasmall red algal species Cyanidioschyzon merolae 10D. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 61-72.
Strain(s): 3377 
DOI: 10.1007/978-981-10-6101-1_5
Nozaki, H., Katagiri, M., Nakagawa, M., Aizawa, K., Watanabe, M. M. 1995 Taxonomic re-examination of the two strains labeled Chlorella in the Microbial Culture Collection at the National Institute for Environmental Studies (NIES-Collection). Microbiol. Cult. Coll., 11, 11-18.
Keywords: Chlorella; Graesiella emersonii comb. nov.; green algae; morphology; taxonomy
Strain(s): 226227686687688689690 
Nozaki, H., Kuroiwa, H., Kuroiwa, T. 1994 Light and electron microscopic characterization of two types of pyrenoids in Gonium (Goniaceae, Chlorophyta). J. Phycol., 30, 279-290.
Keywords: Chlorophyta; electron microscopy; Goniaceae; Gonium pectorale; Gonium quadratum; immunogold electron microscopy; pyrenoid; ribulose-1,5-bisphosphate carboxylase / oxygenase (RuBisCO) taxonomy; thylakoid lamellae
Strain(s): 468653 
DOI: 10.1111/j.0022-3646.1994.00279.x
Nozaki, H., Kuroiwa, H., Mita, T., Kuroiwa, T. 1989 Pleodorina japonica sp. nov. (Volvocales, Chlorophyta) with bacteria-like endosymbionts. Phycologia, 28, 252-267.
Strain(s): 577 
DOI: 10.2216/i0031-8884-28-2-252.1
Nozaki, H., Mahakham, W., Heman W., Matsuzaki, R., Kawachi, M. 2022 Morphology, mating system and taxonomy of Volvox africanus (Volvocaceae, Chlorophyceae) from Thailand. Bot. Stud., 63, 1 (article ID).
Strain(s): 378037813782378344674468 
PubMed: 35061120
DOI: 10.1186/s40529-022-00332-1
Nozaki, H., Mahakham, W., Heman, W., Matsuzaki, R., Kawachi, M. 2020 A new preferentially outcrossing monoicous species of Volvox sect. Volvox (Chlorophyta) from Thailand. PLoS One, 15, e0235622 (article ID).
Strain(s): 273627403382338338744021433644324433443444354436 
PubMed: 32614898
DOI: 10.1371/journal.pone.0235622
Nozaki, H., Maruyama, S., Matsuzaki, M., Nakada, T., Kato, S., Misawa, K. 2009 Phylogenetic positions of Glaucophyta, green plants (Archaeplastida) and Haptophyta (Chromalveolata) as deduced from slowly evolving nuclear genes. Mol. Phylogenet. Evol., 53, 872-880.
Keywords: Archaeplastida; Chromalveolata; eukaryote evolution; Haptophyta; Glaucophyta; green plants; long branch attraction; nuclear genes; phylogeny; primary photosynthetic eukaryotes; short branch; "Super" Plant Kingdom
Strain(s): 547 
PubMed: 19698794
DOI: 10.1016/j.ympev.2009.08.015
Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Higashiyama, T., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2004 Cyanobarterial genes transmitted to the nucleus before divergence of red algae in the Chromista. J. Mol. Evol., 59, 103-113.
Keywords: Chromista; cyanobacterial nuclear genes; phylogeny; plastids; primary endosymbiosis; secondary endosymbiosis
Strain(s): 13323377 
PubMed: 15383913
DOI: 10.1007/s00239-003-2611-1
Nozaki, H., Matsuzaki, M., Misumi, O., Kuroiwa, H., Higashiyama, T., Kuroiwa, T. 2005 Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta). J. Phycol., 41, 652-657.
Keywords: CAD complex; evolution; phylogeny; red algae; pyrimidine biosynthetic cluster
Strain(s): 13323377 
DOI: 10.1111/j.1529-8817.2005.00079.x
Nozaki, H., Matsuzaki, M., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T. 2003 The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol., 56, 485-497.
Keywords: eukaryotes; evolution; nuclear genes; outgroup; phylogeny; plantae; plastid; protein-coding genes; red algae
Strain(s): 13323377 
PubMed: 12664168
DOI: 10.1007/s00239-002-2419-9
Nozaki, H., Matsuzaki, R., Yamamoto, K., Kawachi, M., Takahashi, F. 2015 Delineating a new heterothallic species of Volvox (Volvocaceae, Chlorophyceae) using new strains of “Volvox africanus”. PLoS One, 10, e0142632 (article ID).
Strain(s): 3780378137823783378437853786 
PubMed: 26562165
DOI: 10.1371/journal.pone.0142632
Nozaki, H., Misawa, K., Kajita, T., Kato, M., Nohara, S., Watanabe, M. M. 2000 Origin and evolution of the colonial Volvocales (Chlorophyceae) as inferred from multiple, chloroplast gene sequences. Mol. Phylogenet. Evol., 17, 256-268.
Strain(s): 418456460474541545564566569571572574577582653654666720721722724725727728730731732734735736737851854872882884886887888889890893895896898 
PubMed: 11083939
DOI: 10.1006/mpev.2000.0831
Nozaki, H., Misumi, O., Kuroiwa, T. 2003 Phylogeny of the quadriflagellate Volvocales (Chlorophyceae) based on chloroplast multigene sequences. Mol. Phylogenet. Evol., 29, 58-66.
Strain(s): 257656 
PubMed: 12967607
DOI: 10.1016/S1055-7903(03)00089-7
Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamaguchi, H., Kawachi, M. 2022 Cryopreservation of vegetative cells and zygotes of the multicellular volvocine green alga Gonium pectorale. BMC Microbiol., 22, 103 (article ID).
Strain(s): 2882904684695695706456466526536546557378518528852261226341214499450045014502 
PubMed: 35421922
DOI: 10.1186/s12866-022-02519-9
Nozaki, H., Mori, F., Tanaka, Y., Matsuzaki, R., Yamashita, S., Yamaguchi, H., Kawachi, K. 2023 Cryopreservation of two species of the multicellular volvocine green algal genus Astrephomene. BMC Microbiol., 23, 16 (article ID).
Keywords: Asexual cycle; Astrephomene; Cryopreservation; Cryoprotectant; Culture collection; Volvocine green algae
Strain(s): 4184195645656288538548554017 
PubMed: 36650459
DOI: 10.1186/s12866-023-02767-3
Nozaki, H., Mori, T., Misumi, O., Matsunaga, S., Kuroiwa, T. 2006 Males evolved from the dominant isogametic mating type. Curr. Biol., 16, R1018-R1020.
Strain(s): 16111614221222132214 
PubMed: 17174904
DOI: 10.1016/j.cub.2006.11.019
Nozaki, H., Nakada, T., Watanabe, S. 2010 Evolutionary origin of Gloeomonas (Volvocales, Chlorophyceae), based on ultrastructure of chloroplasts and molecular phylogeny. J. Phycol., 46, 195-201.
Keywords: Chloromonadinia; Chloromonas; evolution; Gloeomonas; molecular phylogeny; pyrenoid; ultrastructure; Volvocales
Strain(s): 447464 
DOI: 10.1111/j.1529-8817.2009.00773.x
Nozaki, H., Ohta, N., Morita, E., Watanabe, M. M. 1998 Toward a natural system of species in Chlorogonium (Volvocales, Chlorophyta): a combined analysis of morphological and rbcL gene sequence data. J. Phycol., 34, 1024-1037.
Keywords: Chlorogonium; Chlorogonium kasakii sp. nov.; Chlorophyta; molecular phylogeny; monophyletic species; morphology; natural systematics; rbcL gene; species taxonomy; Volvocales
Strain(s): 123439446692742743744745746747748749750751752753754755756757758759760761 
DOI: 10.1046/j.1529-8817.1998.341024.x
Nozaki, H., Ohta, N., Takano, H., Watanabe, M. M. 1999 Reexamination of phylogenetic relationships within the colonial Volvocales (Chlorophyta): an analysis of atpB and rbcL gene sequences. J. Phycol., 35, 104-112.
Keywords: atpB gene; Chlorophyta; Gonium; molecular phylogeny; rbcL gene; Volvocaceae; volvocine series; Volvox
Strain(s): 418456460541564566568569571572574577582653654666720721722724725727728730731732734735736737851852858861882884895 
DOI: 10.1046/j.1529-8817.1999.3510104.x
Nozaki, H., Onishi, K., Morita, E. 2002 Differences in pyrenoid morphology are correlated with differences in the rbcL genes of members of the Chloromonas lineage (Volvocales, Chlorophyceae). J. Mol. Evol., 55, 414-430.
Keywords: ATP synthase β-subunit (atpB) gene; Chloromonas; gene evolution; large subunit of Rubisco (rbcL) gene; morphological evolution; P700 chlorophyll a-apoprotein A2 (psaB) gene; pyrenoid; Volvocales
Strain(s): 96123144213418421425428432439446447456474522564566567569571574582653732851858861875882883968 
PubMed: 12355262
DOI: 10.1007/s00239-002-2338-9
Nozaki, H., Ott, F. D., Coleman, A. W. 2006 Morphology, molecular phylogeny and taxonomy of two new species of Pleodorina (Volvocaceae, Chlorophyceae). J. Phycol., 42, 1072-1080.
Keywords: colonial Volvocales; molecular phylogeny; morphology; Pleodorina starrii sp. nov.; Pleodorina thompsonii sp. nov.; taxonomy
Strain(s): 4564605415445776667207217227247257287307317327347357368638658668678688698728918921362136341264127 
DOI: 10.1111/j.1529-8817.2006.00255.x
Nozaki, H., Song, L., Liu, Y., Hiroki, M., Watanabe, M. M. 1998 Taxonomic re-examination of a Chinese strain labeled 'Eudorina sp.' (Volvocaceae, Chlorophyta) based on morphological and DNA sequence data. Phycol. Res., 46, Suppl., 63-70.
Keywords: 5-bisphosphate carboxylase/oxygenase (rbcL) gene; Chlorophyta; Eudorina; large subunit of ribulose-1; molecular phylogeny; morphology; taxonomy; Yamagishiella
Strain(s): 578 
DOI: 10.1111/j.1440-1835.1998.tb00273.x
Nozaki, H., Takahara, M., Nakazawa, A., Kita, Y., Yamada, T., Takano, H., Kawano, S., Kato, M. 2002 Evolution of rbcL group IA introns and intron open reading frames within the colonial Volvocales (Chlorophyceae). Mol. Phylogenet. Evol., 23, 326-338.
Strain(s): 289418582654857875883891892 
PubMed: 12099791
DOI: 10.1016/S1055-7903(02)00030-1
Nozaki, H., Takano, H., Misumi, O., Terasawa, K., Matsuzaki, M., Maruyama, S., Nishida, K., Yagisawa, F., Yoshida, Y., Fujiwara, T., Takio, S., Tamura, K., Chung, S. J., Nakamura, S., Kuroiwa, H., Tanaka, K., Sato, N., Kuroiwa, T. 2007 A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. BMC Biol., 5, 28 (article ID).
Strain(s): 13323377 
PubMed: 17623057
DOI: 10.1186/1741-7007-5-28
Nozaki, H., Takusagawa, M., Matsuzaki, R., Misumi, O., Mahakham, W., Kawachi, M. 2019 Morphology, reproduction and taxonomy of Volvox dissipatrix (Chlorophyceae) from Thailand, with a description of Volvox zeikusii sp. nov. Phycologia, 58, 192-199.
Keywords: Heterothallic species; Homothallic species; Molecular phylogeny; Sexuality; Somatic cell; Transmission electron microscopy
Strain(s): 73141284270 
DOI: 10.1080/00318884.2018.1540238
Nozaki, H., Ueki, N., Isaka, N., Saigo, T., Yamamoto, K., Matsuzaki, R., Takahashi, F., Wakabayashi, K-I., Kawachi, M. 2016 A new morphological type of Volvox from japanese large lakes and recent divergence of this type and V. ferrisii in two different freshwater habitats. PLoS One, 11, e0167148 (article ID).
Strain(s): 273627373987398840214022402340244025402640274028 
PubMed: 27880842
DOI: 10.1371/journal.pone.0167148
Nozaki, H., Ueki, N., Misumi, O., Yamamoto, K., Yamashita, S., Herron, M. D., Rosenzweig, F. 2015 Morphology and reproduction of Volvox capensis (Volvocales, Chlorophyceae) from Montana, USA. Phycologia, 54, 316-320.
Keywords: Monoecious species; Morphology; Pplyspermy; Reproduction; Volvox capensis; Volvox sect. Volvox
Strain(s): 3874 
DOI: 10.2216/15-14.1
Nozaki, H., Yamada, K. T., Takahashi, F., Matsuzaki, R., Nakada, T. 2014 New "missing link" genus of the colonial volvocine green algae gives insights into the evolution of oogamy. BMC Evol. Biol., 14, 37 (article ID).
Strain(s): 3382338333843385338633873388 
PubMed: 24589311
DOI: 10.1186/1471-2148-14-37
Nozaki. H., Mahakham, W., Athibai, S., Yamamoto, K., Takusagawa, M., Misumi, O., Herron, M. D., Rosenzweig, F., Kawachi, M. 2017 Rediscovery of the species of ‘ancestral Volvox’: morphology and phylogenetic position of Pleodorina sphaerica (Volvocales, Chlorophyceae) from Thailand. Phycologia, 56, 469-475.
Keywords: Molecular phylogeny; Morphology; Pleodorina; Pleodorina sphaerica; Sexuality; Somatic cell; Volvox
Strain(s): 4066406740684069 
PubMed: 29375162
DOI: 10.2216/17-3.1
Nozue, S., Katayama, M., Terazima, M., Kumazaki, S. 2017 Comparative study of thylakoid membranes in terminal heterocysts and vegetative cells from two cyanobacteria, Rivularia M-261 and Anabaena variabilis, by fluorescence and absorption spectral microscopy. Biochim. Biophys. Acta-Bioenerg., 1858, 742-749.
Keywords: Cyanobacteria; Heterocyst; Thylakoid membrane; Anabaena variabilis; Rivularia; Spectroscopic microscopy
Strain(s): 2095 
PubMed: 28576442
DOI: 10.1016/j.bbabio.2017.05.007
Nozue, S., Mukuno, A., Tsuda, Y., Shiina, T., Terazima, M., Kumazaki, S. 2016 Characterization of thylakoid membrane in a heterocystous cyanobacterium and green alga with dual-detector fluorescence lifetime imaging microscopy with a systematic change of incident laser power. Biochim. Biophys. Acta-Bioenerg., 1857, 46–59.
Keywords: Photosystem II; Photosystem I; Chlorophyll fluorescence; Fluorescence lifetime imaging microscopy; Heterocystous cyanobacteria; Green algae
Strain(s): 2095 
PubMed: 26474523
DOI: 10.1016/j.bbabio.2015.10.003
Nybom, S. M. K., Salminen, S. J., Meriluoto, J. A. O. 2008 Specific strains of probiotic bacteria are efficient in removal of several different cyanobacterial toxins from solution. Toxicon, 52, 214-220.
Keywords: Cyanotoxin; Microcystin; Cylindrospermopsin; Probiotic bacteria; Bifidobacterium; Lactobacillus; Removal
Strain(s): 107 
PubMed: 18639912
DOI: 10.1016/j.toxicon.2008.04.169
Obata, T. & Shiraiwa, Y. 2005 A novel eukaryotic selenoprotein in the haptophyte alga Emiliania huxleyi. J. Biol. Chem., 280, 18462-18468.
Strain(s): 837 
DOI: 10.1074/jbc.M501517200
Obata, T., Araie, H., Shiraiwa, Y. 2004 Bioconcentration mechanism of selenium by a coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 45, 1434-1441.
Keywords: coccolithophorid; Emiliania huxleyi; selenite uptake; selenium accumulation
Strain(s): 837 
PubMed: 15564527
DOI: 10.1093/pcp/pch164
Obata, T., Sera, K., Futatsugawa, S., Shiraiwa, Y. 2004 Multi-element analysis of marine microalgae using particle-induced X-ray emission. Mar. Biotechnol., 6, 66-70.
Keywords: coccolithophorid; element concentration; elemental composition; Emiliania huxleyi; multi-element analysis; particle-induced X-ray emmision
Strain(s): 837 
Oborník, M., Vancová, M., Lai, D. H., Janouškovec, J., Keeling, P. J., Lukeš, J. 2011 Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of apicomplexa, Chromera velia. Protist, 162, 115-130.
Strain(s): 4391 
PubMed: 20643580
DOI: 10.1016/j.protis.2010.02.004
Ochiai, T., Fukuda, T., Nakata, K., Murakami, T., Tryk, D. A., Koide, Y., Fujishima, A. 2010 Photocalalytic inactivation and removal of algae with TiO2-coated materials. J. Appl. Electrochem., 40, 1737–1742.
Keywords: TiO2 photocatalyst; photoelectrochemical deposition; photocatalytic inactivation; algae
Strain(s): 1668 
DOI: 10.1007/s10800-010-0133-7
Oda, T., Nakamura, A., Okamoto, T., Ishimatsu, A., Muramatsu, T. 1998 Lectin-induced enhancement of superoxide anion production by red tide phytoplankton. Mar. Biol., 131, 383-390.
Strain(s): 6 
DOI: 10.1007/s002270050331
Oda, T., Nakamura, A., Shikayama, M., Kawano,I., Ishimatsu, A., Muramatsu, T. 1997 Generation of reactive oxygen species by Raphidophycean phytoplankton. Biosci. Biotechnol. Biochem., 61, 1658-1662.
Keywords: red tide planlton; Raphidophyceae; Chattonella marina; reactive oxygen species; toxicity
Strain(s): 615 
PubMed: 9362113
DOI: 10.1271/bbb.61.1658
Oda, T., Sato, Y., Kim, D., Muramatsu, T., Matsuyama, Y., Honjo, T. 2001 Hemolytic activity of Heterocapsa circularisquama (Dinophyceae) and its possible involvement in shellfish toxicity. J. Phycol., 37, 509-516.
Keywords: Heterocapsa circularisquama; hemolysis; shellfish toxicity; harmful phytoplankton
Strain(s): 15 
DOI: 10.1046/j.1529-8817.2001.037004509.x
Oda, Y., Nakamura, H., Tokishita, S., Mano, H., Chang, K.-H., Sakamoto, M. 2021 Phenotypic changes in Daphnia pulex under oxygen deficiency, resource limitation and predation risk. Ecol. Res., 36, 533-544.
Keywords: Daphnia pulex; filter‐screen enlargement; hemoglobin synthesis; neck teeth formation; phenotypic plasticity
Strain(s): 35 
DOI: 10.1111/1440-1703.12216
Oda, Y., Sakamoto, M., Miyabara, Y. 2022 Colony formation in three species of the family Scenedesmaceae (Desmodesmus subspicatus, Scenedesmus acutus, Tetradesmus dimorphus) exposed to sodium dodecyl sulfate and its interference with grazing of Daphnia galeata. Arch. Environ. Contam. Toxicol., 82, 37-47.
Strain(s): 95119802 
PubMed: 34535811
DOI: 10.1007/s00244-021-00890-8
Oesterhelt, C., Gross, W. 2002 Different sugar kinases are involved in the sugar sensing of Galdieria sulphuraria. Plant Physiol., 128, 291-299.
Strain(s): 3638 
DOI: 10.1104/pp.010553
Oesterhelt, C., Schnarrenberger, C., Gross, W. 1997 The reaction of mechanism of phosphomannomutase in plants. FEBS Lett., 401, 35-37.
Keywords: Galdieria sulphuraria; Rhodophyta; Phosphomannomutase; Mannose-1,6-bisphosphate; Reaction mechanism
Strain(s): 3638 
DOI: 10.1016/S0014-5793(96)01425-1
Ogasawara, N. & Miyachi, S. 1969 Effect of wavelength on 14CO2-fixation in Chlorella cells. In Progress in Photosynthesis Research, Vol. 3., Ed. by Metzner, H., Verlag C. Lichtenstein, München, pp. 1653-1661.
Strain(s): 2170 
Ogasawara, N. & Miyachi, S. 1970 Effects of disalicylidenepropandiamine and near far-red light on 14CO2-fixation in Chlorella cells. Plant Cell Physiol., 11, 411-416.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a074523
Ogasawara, N. & Miyachi, S. 1970 Regulation of CO2-fixation in Chlorella by light of varied wavelengths and intensities. Plant Cell Physiol., 11, 1-14.
Strain(s): 2170 
Ogasawara, N. & Miyachi, S. 1971 Effects of dark preincubation and chloramphenicol on blue light-induced CO2 incorporation in Chlorella cells. Plant Cell Physiol., 12, 675-682.
Strain(s): 2170 
Ogawa, S. & Hirota, K. 2000 Disintegration of chloroplasts during zygote maturation in Closterium ehrenbergii (Zygnematales, Chlorophyta). Int. J. Plant Sci., 161, 609-614.
Keywords: chloroplast; Closterium; conjugation; disintegration of chloroplast; Zygnematales; zygote maturation
Strain(s): 228229 
DOI: 10.1086/314287
Ogawa, S., Iokawa, Y., Oba, T., Watanabe, T. 1999 Application of low-vacuum scanning electron microscope (LV SEM) to the classes for plankton observation. Bull. Joetsu Univ. Educ., 19, 99-109 (in Japanese with English summary).
Keywords: freeze-drying method; low-vacuum scanning electron microscope (LV SEM); plankton; scanning electron microscope (SEM)
Strain(s): 229 
Ogawa, S., Shatari, Y. 2004 Spot-like area of F-actin associated with the migrating nucleus in post-mitotic cells of Closterium moniliferum var. submoniliferum (Zygnematales, Chlorophyta). Bull. Joetsu univ. Educ., 23, 705-712.
Keywords: Cell division; Closterium; F-actin; microtubule; Nuclear migration; Zygnematales
Strain(s): 182 
Ogawa, T., Tamoi, M., Kimura, A., Mine, A., Sakuyama, H., Yoshida, E., Maruta, T., Suzuki, K., Ishikawa, T., Shigeoka, S. 2015 Enhancement of photosynthetic capacity in Euglena gracilis by expression of cyanobacterial fructose-1,6-/sedoheptulose-1,7-bisphosphatase leads to increases in biomass and wax ester production. Biotechnol. Biofuels, 8, 80 (article ID).
Keywords: Euglena gracilis; Biofuel; Wax ester; Paramylon; Biomass; fructose-1,6-/sedoheptulose-1,7-bisphosphatase; Photosynthesis
Strain(s): 48 
PubMed: 26056534
DOI: 10.1186/s13068-015-0264-5
Ogawa, Y., Kimura, S., Saito, Y., Wada, M. 2012 Infrared study on deuteration of highly-crystalline chitin. Carbohydr. Polym., 90, 650-657.
Keywords: α-Chitin; β-Chitin; Deuteration; FT-IR spectroscopy; X-ray diffraction
Strain(s): 1396 
PubMed: 24751089
DOI: 10.1016/j.carbpol.2012.05.092
Ogawa, Y., Kimura, S., Wada, M., Kuga, S. 2010 Crystal analysis and high-resolution imaging of microfibrillar a-chitin from Phaeocystis. J. Struct. Biol., 171, 111-116.
Keywords: a-chitin microfibril; Phaeocystis; FT-IR spectroscopy; X-ray diffraction; high-resolution electron microscopy; lattice imaging
Strain(s): 1396 
PubMed: 20350601
DOI: 10.1016/j.jsb.2010.03.010
Ogawa, Y., Noda, K., Kimura, S., Kitaoka, M., Wada, M. 2014 Facile preparation of highly crystalline lamellae of (1 → 3)-B-D-glucanusing an extract of Euglena gracilis. Int. J. Biol. Macromol., 64, 415-419.
Keywords: (1 → 3)-B-D-Glucan; In vitro synthesis; Laminaribiose phosphorylasea
Strain(s): 48 
PubMed: 24374085
DOI: 10.1016/j.ijbiomac.2013.12.027
Ogbonna, C., N. & Chioke, O. J. 2018 Effects of moringa extracts on sedimentation and growth of Chlorella variabilis. Int. J. Appl. Nat. Sci., 7, 131-138.
Keywords: Cell Growth; Cell Sedimentation; Chlorella variabilis; Harvesting of Microalgae; Moringa Oliefera; Seed Extract
Strain(s): 2541 
Oh, S. J., Kim, D.-I., Sajima, T., Shimasaki, Y., Matsuyama, Y., Oshima, Y., Honjo, T., Yang, H.-S. 2008 Effects of irradiance of various wavelengths from light-emitting diodes on the growth of the harmful dinoflagellate Heterocapsa circularisquama and the diatom Skeletonema costatum. Fish. Sci., 74, 137-145.
Keywords: Heterocapsa circularisquama; irradiance; light wavelengths; light-emitting diode; Skeletonema costatum
Strain(s): 324 
DOI: 10.1111/j.1444-2906.2007.01503.x
Ohbayashi, R., Hirooka, S., Onuma, R., Kanesaki, Y., Hirose, Y., Kobayashi, Y., Fujiwara, T., Furusawa, C., Miyagishima, S. 2020 Evolutionary changes in DnaA-dependent chromosomal replication in cyanobacteria. Front. Microbiol., 11, 786 (article ID).
Keywords: CDS skew; chromosome replication; cyanobacteria; DnaA, GC skew; polyploidy
Strain(s): 3708 
PubMed: 32411117
DOI: 10.3389/fmicb.2020.00786
Oh-hama, T. & Miyachi, S. 1959 Effect of illumination and oxygen supply upon the levels of pyridine nucleotides in Chlorella cells. Biochim. Biophys. Acta, 34, 202-210.
Strain(s): 2170 
PubMed: 14428441
DOI: 10.1016/0006-3002(59)90248-3
Oh-hama, T. & Miyachi, S. 1960 Changes in levels of pyridine nucleotides in Chlorella cells during the course of photosynthesis. Plant Cell Physiol., 1, 155-162.
Strain(s): 2170 
Oh-hama, T., Moriyama, Y., Tamiya, H. 1965 Changes in contents and oxidoreductive states of pyridine nucleotides in Chlorella cells during their life cycle. In Beitr. zur Biochem. und Physiol. von Naturstoffen (Festschr. f. K. Mothes), Gustav Fischer, Jena, pp. 341-345.
Strain(s): 2170 
Oh-hama, T., Senger, H. 1978 Spectral effectiveness in chlorophyll and 5-amino levulinic acid formation during regreening of glucose-bleached cells of Chlorella protothecoides. Plant Cell Physiol., 19, 1295-1299.
Keywords: ALA synthesis; blue light effect; Chlorella protothecoides; chlorophyll formation
Strain(s): 227 
DOI: 10.1093/oxfordjournals.pcp.a075711
Oh-hama, T., Seto, H., Miyachi, S. 1985 13C-Nuclear magnetic resonance studies of the biosynthesis of 5-aminolevulinic acid destined for chlorophyll formation in dark-grown Scenedesmus obliquus. Plant Sci., 42, 153-158.
Keywords: biosynthesis of 5-aminolevulinic acid; chlorophyll biosynthesis; 13C-nuclear magnetic resonance; Scenedesmus obliquus
Strain(s): 2280 
DOI: 10.1016/0168-9452(85)90121-9
Oh-hama, T., Seto, H., Otake, N., Miyachi, S. 1982 13C-NMR evidence for the pathway of chlorophyll biosynthesis in algae. Biochem. Biophys. Res. Commun., 105, 647-652.
Strain(s): 2280 
DOI: 10.1016/0006-291X(82)91483-8
Oh-hama, T., Seto, H., Otake, N., Miyachi, S. 1983 13C-NMR spectra of chlorophylls a and b in green algae biosynthetically enriched with [1-13C] glutamate. FEBS Lett., 153, 404-408.
Keywords: 5-aminolevulinic acid; chlorophyll a; chlorophyll b; 13C-NMR; [1-13C]glutamic acid; Scenedesmus obliquus
Strain(s): 2280 
Oh-hama, T., Siebelt, F., Furihata, K., Seto, H., Miyachi, S., Ohmori, K. 1986 31P-NMR studies on inorganic polyphosphates in microalgae. J. Phycol., 22, 485-490.
Keywords: Anabaena cylindrica; Chlorella vulgaris 11h; inorganic polyphosphate; 13P nuclear magnetic resonance of algae
Strain(s): 2280 
DOI: 10.1111/j.1529-8817.1986.tb02492.x
Ohki, K. 1999 A possible role of temperate phage in the regulation of Trichodesmium biomass. In Marine cyanobacteria and related organisms, Eds. by Charpy, L., Larkum, Bulletin de l'Institut Oceanographique, Monaco, Special paper, 19, pp. 287-292.
Strain(s): 3600 
Ohki, K. 2008 Intercellular localization of nitrogenase non-heterocystous Cyanobacterium (Cyanophyte), Trichodesmium sp. NIBB 1067. J. Oceanogr., 64, 211-216.
Keywords: Trichodesmium spp.; nitrogenase; whole-cell immunolocalization; immunocytochemical detection; in situ hybridization; diazotrophic cyanobacteria; horseradish peroxidaseconjugated probe; 3,3'-diaminobenzidine
Strain(s): 3600 
Ohki, K. & Fujita, Y. 1992 Light-dependent maintenance of active nitrogenase in the non-heterocystous cyanophyte Trichodesmium sp. NIBB10687. In Research in photosynthesis, Ed. by Murata, N., Kluwer Academic Publishers, IV, pp. 103-106.
Strain(s): 3600 
Ohki, K., Falkowski, P.G., Rueter, J. G., Fujita, Y. 1991 Experimental study of the marine cyanophyte Trichodesmium sp., a nitrogen-fixing phytoplankton in tropical and subtropical sea area. In Marine biology: Its accomplishment and future prospect, Eds. by Mauchline, J., Nemoto, T., Hokusen-Sha, pp. 205-216.
Strain(s): 3600 
Ohki, K., Fujita, Y. 1982 Laboratory culture of the pelagic blue-green alga Trichodesmium thiebautii: conditions for unialgal culture. Mar. Ecol. Prog. Ser., 7, 185-190.
Strain(s): 3600 
Ohki, K., Fujita, Y. 1988 Aerobic nitrogenase activity measured as acetylene reduction in the marine non-heterocystous cyanobacterium Trichodesmium spp. grown under artificial conditions. Mar. Biol., 98, 111-114.
Strain(s): 3600 
DOI: 10.1007/BF00392665
Ohki, K., Kumazawa, S., Yoe, T-W., Ho, K-K. 1998 Improvement of artificial medium for the culture of marine microalgae and isolation and characterization of marine cyanobactria(Cyanophyta) from Singapore. In Asian Network on Microbial Researches, Eds. Gadjah Mada University, Riken and Science and Technology Agency, Japan 147-154.
Strain(s): 3600 
Ohki, K., Rueter, J. G., Fujita, Y. 1986 Cultures of the pelagic cyanophytes Trichodesmium erythraeum and T. thiebautii in synthetic medium. Mar. Biol., 91, 9-13.
Strain(s): 3600 
DOI: 10.1007/BF00397565
Ohki, K., Zehr, J. P., Falkowsk, P. G., Fujita, Y. 1991 Regulation of nitrogen-fixation by different nitrogen sources in the marine non-heterocystous cyanobacterium Trichodesmium sp. NIBB1067. Arch. Microbiol., 156, 335-337.
Keywords: Cyanobacterium; Trichodesmium; Nitrogen-fixation; Nitrogenase
Strain(s): 3600 
DOI: 10.1007/BF00248706
Ohki, K., Zehr, J. P., Fujita, Y. 1992 Trichodesmium: Establishment of culture and characteristics of N2-fixation. In Marine Pelagic Cyanobacteria: Trichodesmium and other Diazotrophs, Eds. by Carpenter, E.J., Capone, D.G., Rueter, J.G., Springer, Dordrecht, 362, pp. 307-318.
Strain(s): 3600 
DOI: 10.1007/978-94-015-7977-3_20
Ohki, K., Zehr, J. P., Fujita, Y. 1992 Regulation of nitrogenase activity in relation to the light-dark regime in the filamentous non-heterocystous cyanobacterium Trichodesmium sp. NIBB 1067. J. Gen. Microbiol., 138, 2679-2685.
Strain(s): 3600 
DOI: 10.1099/00221287-138-12-2679
Ohko, Y., Nagao, Y., Okano, K., Sugiura, N., Fukuda, A., Yang, Y., Negishi, N., Takeuchi, M., Hanada, S. 2009 Prevention of Phormidium tenue biofilm formation by TiO2 photocatalysis. Microbes Environ., 24, 241-245.
Keywords: Phormidium tenue; cyanobacteria; TiO2 photocatalyst; anti-biofilm; UV light
Strain(s): 512 
DOI: 10.1264/jsme2.ME09106
Ohkouchi, Y., Tajima, S., Nomura, M., Itoh, S. 2015 Inflammatory responses and potencies of various lipopolysaccharides from bacteria and cyanobacteria in aquatic environments and water supply systems. Toxicon, 97, 23-31.
Keywords: Lipopolysaccharide (LPS); Purification; Endotoxin; Indigenous bacteria/cyanobacteria; Human monocytic cells; Cytokine secretion
Strain(s): 44946 
PubMed: 25666398
DOI: 10.1016/j.toxicon.2015.02.003
Ohkubo, N., Tomaru, Y., Yamaguchi, H., Kitatsuji, S., Mochida, K. 2017 Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major). Fish Physiol. Biochem., 43, 1603–1612.
Strain(s): 6 
PubMed: 28695381
DOI: 10.1007/s10695-017-0396-6
Ohmori, K. & Ohmori, M. 1988 Ammonium assimilation in the blue-green alga Spirulina platensis. Jpn. J. Phycol. (Sôrui), 36, 12-16.
Strain(s): 39 
Ohmori, K., Hirose, M., Ohmori, M. 1993 An increase in the intracellular concentration of cAMP triggers formation of an algal mat by the cyanobacterium Spirulina platensis. Plant Cell Physiol., 34, 169-171.
Keywords: cyanobacteria (blue-green algae); cyclic AMP; motility; Spirulina platensis
Strain(s): 39 
DOI: 10.1093/oxfordjournals.pcp.a078394
Ohmori, M. 1984 Effects of preillumination on dark nitrogen fixation and respiration by Anabaena cylindrica. Plant Cell Physiol., 25, 125-130.
Keywords: acetylene reduction; Anabaena; dark nitrogen fixation; respiration
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a076684
Ohmori, M. 1989 cAMP in Anabaena cylindrica: Rapid changes in cellular levels in response to changes in extracellular environments. Plant Cell Physiol., 30, 911-914.
Keywords: Anabaena cylindrica; cAMP; cyanobacteria; membrane potential
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a077824
Ohmori, M. & Hattori, A. 1971 Heterocyst and nitrogen fixation in Anabaena cylindrica. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, pp. 598-601.
Strain(s): 19 
Ohmori, M. & Hattori, A. 1971 Nitrogen fixation and heterocysts in the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 12, 961-967.
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a078349
Ohmori, M. & Hattori, A. 1972 Effect of nitrate on nitrogen-fixation by the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 13, 589-599.
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a074772
Ohmori, M. & Hattori, A. 1974 Effect of ammonia on nitrogen fixation by the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 15, 131-142.
Strain(s): 19 
Ohmori, M. & Hattori, A. 1978 Transfer change in the ATP pool of Anabaena cylindrica associated with ammonia assimilation. Arch. Mikrobiol., 117, 17-20.
Strain(s): 19 
Ohmori, M. & Hattori, A. 1980 C2H2 reduction and 15N2 fixation in blue-green algae. In Molybdenum Chemistry of Biological Significance, Eds. by Newton, W. E. & Otsuka, S., Plenum Publishing Co., New York, pp. 95-104.
Strain(s): 19 
Ohmori, M. & Kanda, J. 1987 H+ and K+ efflux associated with NH4+ uptake in Anabaena cylindrica cells in the dark. J. Gen. Appl. Microbiol., 33, 311-319.
Strain(s): 19 
DOI: 10.2323/jgam.33.311
Ohmori, M. & Ohmori, K. 1982 Application of glass fiber paper chromatography to measurement of 15N content of amino acids. Radioisotopes, 31, 651-653.
Keywords: glass fiber paper chromatography; nitrogen-15-amino acid
Strain(s): 19 
Ohmori, M. & Ohmori, K. 1985 Differential effects of methionine sulfoximine on light and dark uptake of nitrate by Anabaena cylindrica. Plant Cell Physiol., 26, 957-960.
Keywords: Anabaena cylindrica; methionine sulfoximine; nitrate uptake; nitrite uptake
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a076991
Ohmori, M., Hasunuma, K., Furukawa, K. 1988 GTP-binding proteins in a cyanobacterium Anabaena cylindrica. Biochem. Biophys. Res. Commun., 151, 215-221.
Strain(s): 19 
Ohmori, M., Miyachi, S., Okabe, K., Miyachi, S. 1984 Effects of ammonia on respiration, adenylate levels, amino acid synthesis and CO2 fixation in cells of Chlorella vulgaris 11h in darkness. Plant Cell Physiol., 25, 749-756.
Keywords: adenylate level; amino acid; ammonia effect; Chlorella vulgaris; dark CO2 fixation; respiration
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076768
Ohmori, M., Oh-hama, T., Furihata, K., Miyachi, S. 1986 Effect of ammonia on cellular pH of Anabaena cylindrica determined with 31P NMR spectroscopy. Plant Cell Physiol., 27, 563-566.
Keywords: ammonia effect; Anabaena cylindrica; 31P NMR spectroscopy; cellular pH
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a077134
Ohmori, M., Ohmori, K., Hasunuma, K. 1988 Rapid change in cyclic 3',5'-AMP concentration triggered by a light-off or light-on signal in Anabaena cylindrica. Arch. Mikrobiol., 150, 203-204.
Strain(s): 19 
DOI: 10.1007/BF00425163
Ohmori, M., Ohmori, K., Strotman, H. 1977 Inhibition of nitrate uptake by ammonia in a blue-green alga, Anabaena cylindrica. Arch. Mikrobiol., 114, 225-229.
Strain(s): 19 
DOI: 10.1007/BF00446866
Ohmori, M., Saito, T., Ohmori, K. 1985 Occurrence of glutamine-2-oxoacid transaminase activity in the blue-green alga, Anabaena cylindrica. J. Gen. Appl. Microbiol., 31, 171-176.
Strain(s): 192170 
DOI: 10.2323/jgam.31.171
Ohmori, M., Satoh, Y., Urata, K. 1989 Light-induced accumulation of lactate and succinate in Anabaena cylindrica (Cyanophyta). Arch. Mikrobiol., 151, 101-104.
Strain(s): 19 
DOI: 10.1007/BF00414421
Ohmura, Y., Kawachi, M., Kasai, F., Watanabe, M. M., Takeshita, S. 2006 Genetic combinations of symbionts in a vegetatively reproducing lichen, Parmotrema tinctorum, based on its rDNA sequences. Bryologist, 109, 43-59.
Keywords: diversity; ITS rDNA; mycobiont; Parmotrema tinctorum; photobiont; selectivety; Trebouxia corticola; vegetative reproduction.
Strain(s): 1446144714481449145014511452145314541455 
DOI: 10.1639/0007-2745(2006)109[0043:GCOSIA]2.0.CO;2
Ohmura, Y., Takeshita, S., Kawachi, M. 2019 Photobiont diversity within populations of a vegetatively reproducing lichen, Parmotrema tinctorum, can be generated by photobiont switching. Symbiosis, 77, 59–72.
Keywords: Lichenized fungi; Microalgae; rbcL; Trebouxia corticola; Selectivity; Vegetative reproduction
Strain(s): 1446144714481449145014511452145314541455 
DOI: 10.1007/s13199-018-0572-1
Ohnuma, M., Kuroiwa, T., Tanaka, K. 2011 Optimization of cryopreservation conditions for the unicellular red alga Cyanidioschyzon merolae. J. Gen. Appl. Micobiol.,, 57, 137-143.
Keywords: cryoinjury; cryopreservation; Cyanidioschyzon merolae; unicellular red alga
Strain(s): 13323377 
PubMed: 21817825
DOI: 10.2323/jgam.57.137
Ohnuma, M., Misumi, O., Fujiwara, T., Watanabe, S., Tanaka, K., Kuroiwa, T. 2009 Transient gene suppression in a red alga, Cyanidioschyzon merolae 10D. Protoplasma, 236, 107-112.
Keywords: Antisense suppression; Cyanidioschyzon merolae; Catalase; GFP; Transformation
Strain(s): 3377 
PubMed: 19533298
DOI: 10.1007/s00709-009-0056-5
Ohnuma, M., Yokoyama, T., Inouye, T., Sekine, Y., Tanaka, K. 2008 Polyethylene glycol (PEG)-mediated transient gene expression in a Red Alga, Cyanidioschyzon merolae 10D. Plant Cell Physiol., 49, 117-120.
Keywords: Cyanidioschyzon merolae; Hemagglutinin; Polyethylene glycol; Transformation; Transient expression system
Strain(s): 3377 
PubMed: 18003671
DOI: 10.1093/pcp/pcm157
Ohta, N., Matsuzaki, M., Misumi, O., Miyagishima, S., Nozaki, H., Tanaka, K., Shin-I, T., Kohara, Y., Kuroiwa, T. 2003 Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res., 10, 67-77.
Keywords: Cyanidioschyzon merolae; red algae; plastid; genome sequencing
Strain(s): 13323377 
PubMed: 12755171
DOI: 10.1093/dnares/10.2.67
Ohta, N., Nagashima, H., Kawano, S., Kuroiwa, T. 1992 Isolation of the chloroplast DNA and the sequence of the trnK gene from Cyanidium caldarium strain RK-1. Plant Cell Physiol., 33, 657-661.
Keywords: chloroplast DNA; Cyanidium caldarium; transfer RNA-lysine
Strain(s): 2502137 
DOI: 10.1093/oxfordjournals.pcp.a078302
Ohta, N., Satao, N., Ueda, K., Kuroiwa, T. 1997 Analysis of a plastid gene cluster reveals a close relationship between Cyanidioschyzon and Cyanidium. J. Plant Res., 110, 235-245.
Keywords: Cyanidioschyzon merolae; Cyanidium caldarium; Plastid genome; Rhodophyta
Strain(s): 3377 
DOI: 10.1007/BF02509312
Ohta, N., Sato, N., Kuroiwa, T. 1998 Structure and organization of the mitochondrial genome of the unicellular red alga Cyanidioschyzon merolae deduced from the complete nucleotide sequence. Nucleic Acids Res., 26, 5190-5198.
Strain(s): 13323377 
PubMed: 9801318
DOI: 10.1093/nar/26.22.5190
Ohta, N., Sato, N., Kuroiwa, T. 1999 The organellar genomes of Cyanidioschyzon merolae. In Enigmatic Microorganisms and Life in Extreme Environments, Ed. by Seckbach, J., Kluwer Academic Publishers, pp. 139-149.
Strain(s): 3377 
Ohta, S., Chang, T., Aozasa, O., Kondo, M., Miyata, H. 1992 Sustained production of arachidonic and eicosapentaenoic acids by the red alga Porphyridium purpureum cultured in a light/dark cycle. J. Ferment. Bioengin., 74, 398-402.
Strain(s): 214021682256 
DOI: 10.1016/0922-338X(92)90040-2
Ohta, S., Miyamoto, K., Miura, Y. 1987 Hydrogen evolution as a consumption mode of reducing equivalents in green algal fermentation. Plant Physiol., 83, 1022-1026.
Strain(s): 21693284 
PubMed: 16665317
DOI: 10.1104/pp.83.4.1022
Ohtaka,K., Hori, K., Kanno, Y., Seo, M., Ohta, H. 2017 Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens. Plant Physiol., 174, 1621-1632.
Strain(s): 2285 
PubMed: 28533212
DOI: 10.1104/pp.17.00274
Oikawa, E. Ishibashi, Y., 2004 Species specificity of musty odor producing Phormidium tenue in Lake Kamafusa. Wat. Sci. Tech., 49, 41-46.
Keywords: 16S-rDNA sequence; 2-methylisoborneol; musty odor; Phormidium tenue phylogenetic tree
Strain(s): 213033417376512611 
PubMed: 15237605
DOI: 10.2166/wst.2004.0529
Oikawa, E., Ishibashi, Y., Abe, T., Umetsu, H. 2000 Phylogenetic classification of musty odor and/or toxic compounds producing cyanobacteria. Environ. Eng. Res., 37, 183-191 (in Japanese with English summary).
Keywords: cyanobacteria; musty odor; 16S ribosomal RNA; PCR; phylogenetic trees
Strain(s): 213033417376512 
DOI: 10.11532/proes1992.37.183
Oikawa, E., Ohnuma, T., Shimizu, A., Ishibashi, Y. 1994 Phylogenetic studies on musty odor producing cyanobacteria using the 16S ribosomal RNA [16S ribosômu RNA enki-hairetsu no hikaku ni yoru kabi-shû sansei ransô-rui no bunrui]. J. Jpn. Water Works Assoc. [Suidô-Kyôkai Zasshi], 63(12), 56-63 (in Japanese).
Keywords: musty odor; gene; cyanobacteria
Strain(s): 3676512 
Oishi, S. & Watanabe, M. F. 1986 Acute toxicity of Microcystis aeruginosa and its cardiovascular effects. Environ. Res., 40, 518-524.
Strain(s): 3349 
DOI: 10.1016/S0013-9351(86)80126-8
Ok, J. H., Jeong, H. J., Lim, A. S., Kang, H. C., You, J. H., Park, S. A., Eom, S. H. 2023 Lack of mixotrophy in three Karenia species and the prey spectrum of Karenia mikimotoi (Gymnodiniales, Dinophyceae). Algae, 38, 39-55.
Keywords: feeding; harmful algal bloom; Kareniaceae; lysis; protist; red tide; trophic mode
Strain(s): 4541 
DOI: 10.4490/algae.2023.38.2.28
Okamoto, N. & Inouye, I. 2005 The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist, 156, 163-179.
Keywords: beta-tubulin; Cryptophyta; Katablepharidophyta/Kathablepharida; Katablepharis/Kathablepharis japonica; Leucocrypta; Leucocryptos marina; phylogeny; SSU rDNA
Strain(s): 133313341335 
PubMed: 16171184
DOI: 10.1016/j.protis.2004.12.003
Okamoto, T., Kim, D., Oda, T., Matsuoka, K., Ishimatsu, A., Muramatsu, T. 2000 Concanavalin A-induced discharge of glycocalyx of raphidophycean flagellates, Chattonella marina and Heteroshigma akashiwo. Biosci. Biotechnol. Biochem., 64, 1767-1770.
Keywords: red tide; concanavalin A; glycocalyx; phytoplankton
Strain(s): 6 
PubMed: 10993174
DOI: 10.1271/bbb.64.1767
Okamoto, Y., Haraguchi, Y., Sawamura, N., Asahi, T., Shimizu, T. 2020 Mammalian cell cultivation using nutrients extracted from microalgae. Biotechnol. Prog., 36, e2941 (article ID).
Keywords: acidic hydrolysis; amino acids; glucose; mammalian cell culture; microalgae; nutrients
Strain(s): 2739492170 
PubMed: 31756286
DOI: 10.1002/btpr.2941
Okamura, H., Aoyama, I., Liu, D., Maguire, R. J., Pacepavicius, G. J., Lau, Y. L. 2000 Fate and ecotoxicity of the new antifouling compound irgarol 1051 in the aquatic environment. Water Res., 34, 3523-3530.
Keywords: antifouling compound; degradation product; ecotoxicity; fate; berbicide; Irgarol 1051; M1; Seto Inland Sea Japan; transformation
Strain(s): 35 
DOI: 10.1016/S0043-1354(00)00095-6
Okamura, H., Kitano, S., Toyota, S., Harino, H., Thomas, K. V. 2009 Ecotoxicity of the degradation products of triphenylborane pyridine (TPBP) antifouling agent. Chemosphere, 74, 1275-1278.
Keywords: Artemia; bioassay; biocide; biphenyl; marina; Skeletonema
Strain(s): 323 
PubMed: 19095285
DOI: 10.1016/j.chemosphere.2008.11.014
Okamura, H., Piao, M., Aoyama, I., Sudo, M., Okubo, T., Nakamura, M. 2002 Algal growth inhibition by river water pollutants in the agricultural area around Lake Biwa, Japan. Environ. Pollut., 117, 411-419.
Keywords: Algal bioassay; Herbicide; Lake Biwa; Runoff; Simetryn
Strain(s): 35 
PubMed: 11911525
DOI: 10.1016/S0269-7491(01)00196-8
Okamura, K. 1992 Growth characteristics of Skeletonema costatum for algal growth potential. Kanagawa-ken Kankyô Kagaku Sentâ Kenkyû Hôkoku, 15, 12-15 (in Japanese with English title).
Strain(s): 324 
Okamura, T., Kondo, R. 2015 Suigetsumonas clinomigrationis gen. et sp. nov., a novel facultative anaerobic nanoflagellate isolated from the meromictic Lake Suigetsu, Japan. Protist, 166, 409-421.
Keywords: Nanoflagellate; Placididea; Stramenopiles; Ultrastructure
Strain(s): 3647 
PubMed: 26202992
DOI: 10.1016/j.protis.2015.06.003
Okano, K., Miyata, N., Ozaki, Y. 2015 Whole genome sequence of the non-microcystin-producing Microcystis aeruginosa strain NIES-44. GenomeA, 3, e00135-15 (article ID).
Strain(s): 44 
PubMed: 25792056
DOI: 10.1128/genomeA.00135-15
Okino, T., Matsuda, H., Murakami, M., Yamaguchi, K. 1993 Microginin, an angiotensin-converting enzyme inhibitor from the blue-green alga Microcystis aeruginosa. Tetrahedron Letters, 34, 501-504.
Strain(s): 100 
DOI: 10.1016/0040-4039(93)85112-A
Okino, T., Matsuda, H., Murakami, M., Yamaguchi, K. 1995 New microviridins, elastase inhibitors from the blue-green alga Microcystis aeruginosa. Tetrahedron, 51, 10679-10686.
Strain(s): 298 
DOI: 10.1016/0040-4020(95)00645-O
Okino, T., Murakami, M., Haraguchi, R., Munekata, H., Matsuda, H., Yamaguchi, K. 1993 Micropeptins A and B, plasmin and trypsin inhibitors from the blue-green alga Microcystis aeruginosa. Tetrahedron Letters, 34, 8131-8134.
Strain(s): 100 
DOI: 10.1016/S0040-4039(00)61471-5
Okino, T., Sun, Q., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Nostopeptins A and B, elastase inhibitors from the cyanobacterium Nostoc minutum. J. Nat. Prod., 60, 158-161.
Strain(s): 26 
DOI: 10.1021/np960649a
Okubo, Y., Inoue, T., Yokoto, K. 2012 Estimating bioavailability of soil particulate phosphorus toMicrocystis aeruginosa. J. Appl. Phycol., 24, 1503-1507.
Keywords: Particulate phosphorus; Bioavailable phosphorus; Microcystis aeruginosa; Cyanobacteria; Sequential phosphorus extraction
Strain(s): 44 
DOI: 10.1007/s10811-012-9809-1
Okuda, Y., Hiraiwa, M., Shimizu, N., Hashimoto, S. 2023 Production of volatile organic iodine compounds by the marine cyanobacterium Calothrix parasitica under different light intensities. Mar. Chem., 248, 104211 (article ID).
Keywords: Iodinated hydrocarbons; Halogenated hydrocarbons; Light effects; Phytoplankton
Strain(s): 267 
DOI: 10.1016/j.marchem.2023.104211
Okumura, C., Saffreena, N., Rahman, M. A., Hasegawa, H., Miki, O., Takimoto, A. 2015 Economic efficiency of different light wavelengths and intensities using LEDs for the cultivation of green microalga Botryococcus braunii (NIES-836) for biofuel production. Environ. Prog. Sustain. Energy, 34, 269-275.
Keywords: microalgae; Botryococcus braunii (NIES-836); growth efficiency; light-emitting diodes (LEDS); economic efficiency
Strain(s): 836 
DOI: 10.1002/ep.11951
Okumura, Y., Koyama, J., Takaku, H., Satoh, H. 2001 Influence of organic solvents on the growth of marine microalgae. Arch. Environ. Contam. Toxicol., 41, 123-128.
Strain(s): 6324 
PubMed: 11462135
DOI: 10.1007/s002440010229
Okuyama, H., Kogame, K., Takeda, S. 1993 Phylogenetic significance of the limited distribution of octadecapentaenoic acid in Prymnesiophytes and photocynthetic dinoflagellates. Proc. NIPR Symp. Polar Biol., 6, 21-26.
Strain(s): 353 
Okuyama, H., Morita, N., Kogame, K. 1992 Occurrence of octadecapentaenoic acid in lipids of a cold stenothermic alga, prymnesiophyte strain B. J. Phycol., 28, 465-472.
Keywords: Antarctic; cold stenotherm; fatty acid composition; octadecapentaenoic acid; prymnesiophytes; psychrophile
Strain(s): 8 
DOI: 10.1111/j.0022-3646.1992.00465.x
Oliveira, C. Y. B., Oliveira, C. D. L., Prasad, R., Ong, H. C., Araujo, E. S., Shabnam, N., Gálvez, A. O. 2021 A multidisciplinary review of Tetradesmus obliquus: a microalga suitable for large-scale biomass production and emerging environmental applications. Rev. Aquac., 13, 1594-1618.
Keywords: Acutodesmus obliquus; bibliometric analysis; biorefinery; renewable energy; Scenedesmus obliquus; wastewater treatment
Strain(s): 2280 
DOI: 10.1111/raq.12536
Oliveira, E. D. C. de, Cunha, A. C. da, Silva, N. B. da, Castelo-Branco, R., Morais, J., Schneider, M. P. C., Faustino, S. M. M., Ramos, V., Vasconcelos, V. 2019 Morphological and molecular characterization of cyanobacterial isolates from the mouth of the Amazon River. Phytotaxa, 387, 269-288.
Keywords: Amazonia; Limnothrix; Polyphasic approach; Pseudanabaena; 16S rRNA phylogeny; Algae
Strain(s): 504512 
DOI: 10.11646/phytotaxa.387.4.1
Omata, T. & Murata, N. 1986 Glucolipid synthesis activities in cytoplasmic and the thylakoid membranes from the cyanobacterium Anacystis nidulans. Plant Cell Physiol., 27, 485-490.
Keywords: Anacystis nidulans; cyanobacterium; cytoplasmic membrane; glucolipid; lipid biosynthesis; thylakoid membrane
Strain(s): 21703277 
DOI: 10.1093/oxfordjournals.pcp.a077124
Omura, T., Umita, T., Aizawa, J., Komatsu, Y., Ishizaki, M., Onuma, M. 1991 Accumulation of extracellular non-volatile organic acids in batch cultures of Chlorella vulgaris and Microcystis aeruginosa. Jpn. J. Water Poll. Res., 14, 615-623 (in Japanese with English summary).
Keywords: Chlorella vulgaris; Microcystis aeruginosa; batch culture; non-volatile organic acids; dissolved organic carbon
Strain(s): 87227 
Onduka, T., Kakuno, A., Kono, K., Ito, K., Mochida, K., Fujii, K. 2012 Toxicity of chlorothalonil to marine organisms. Fish. Sci., 78, 1301-1308.
Keywords: Antifouling biocides; Toxicity; Early-life-stage Toxicity test; Predicted no-effect concentration
Strain(s): 324 
DOI: 10.1007/s12562-012-0562-9
Onduka, T., Kono, K., Ito, M., Ohkubo, N., Hano, T., Ito, K., Mochida, K. 2020 Ecological risk assessment of an antifouling biocide triphenyl (octadecylamine) boron in the Seto Inland Sea, Japan. Mar. Pollut. Bull., 157, 111320 (article ID).
Keywords: Algal growth inhibition test; Crustacean reproduction test; Early-life stage toxicity test; Species sensitivity distribution
Strain(s): 324 
PubMed: 32658685
DOI: 10.1016/j.marpolbul.2020.111320
Onduka, T., Mochida, K., Harino, H., Ito, K., Kakuno, A., Fujii, K. 2010 Toxicity of metal pyrithione photodegradation products to marine organisms with indirect evidence for their presence in seawater. Arch. Environ. Contam. Toxicol., 58, 991-997.
Strain(s): 324 
PubMed: 19967345
DOI: 10.1007/s00244-009-9430-8
Onduka, T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of degradation products of the antifouling biocide pyridine triphenylborane to marine organisms. Arch. Environ. Contam. Toxicol., 65, 724-732.
Strain(s): 324 
PubMed: 23929384
DOI: 10.1007/s00244-013-9945-x
Onduka, T., Ojima, D., Kakuno, A., Mochida, K., Ito, K., Koyama, J., Fujii, K. 2012 Nitrated polycyclic aromatic hydrocarbons in the marine environment: acute toxicities for organisms at three trophic levels. Jpn. J. Environ. Toxicol., 15, 1-10.
Keywords: alga; crustacean, fish, nitro-PAHs; predicted no effect concentrations
Strain(s): 324 
DOI: 10.11403/jset.15.1
Onduka,T., Ojima, D., Ito, M., Ito, K., Mochida, K., Fujii, K. 2013 Toxicity of the antifouling biocide Sea-Nine 211 to marine algae, crustacea, and a polychaete. Fish. Sci., 79, 999-1006.
Keywords: Risk assessment; Ecological toxicity; Coastal area of Japan; Perinereis nuntia; Sediment toxicity test; No-observed-effect concentration
Strain(s): 324 
DOI: 10.1007/s12562-013-0678-6
Onishi, Y., Mohri, Y., Tuji, A., Ohgi, K., Yamaguchi, A., Imai, I. 2014 The seagrass Zostera marina harbors growth-inhibiting bacteria against the toxic dinoflagellate Alexandrium tamarense. Fish. Sci., 80, 353-362.
Keywords: Toxic blooms; Alexandrium tamarense; Algicidal bacteria; Seagrass; Zostera marina; Mitigation; Prevention
Strain(s): 1 
DOI: 10.1007/s12562-013-0688-4
Onji, M., Nakano, S.-I., Suzuki, S. 2003 Virus-like particles suppress growth of the red-tide-forming marine dinoflagellate Gymnodinium mikimotoi. Mar. Biotechnol., 5, 435-442.
Keywords: Gymnodinium mikimotoi; virus; red tide
Strain(s): 37 
PubMed: 14730426
DOI: 10.1007/s10126-002-0085-y
Ono, M., Sawada, K., Kubota, M., Shiraiwa, Y. 2009 Change of the unsaturation degree of alkenone and alkenoate during acclimation to salinity change in Emiliania huxleyi and Gephyrocapsa oceanica with reference to palaeosalinity indicator. Res. Org. Geochem., 25, 53-60.
Strain(s): 837839 
DOI: 10.20612/rog.25.0_53
Ono, T., Murata, N., Fujita, T. 1983 Thermal analysis of membrane lipids from the blue-green algae Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 24, 635-639.
Keywords: Anabaena variabilis; Anacystis nidulans; blue-green alga; lipid; thermal analysis; thylakoid membrane
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a076559
Ono, Y., Okamura,H., Kawara, O., Aoyama, I., Oda, Y. 1999 Genotoxicity and ecotoxicity of sediment in road runoff. J. Jpn. Soc. Wat. Environ., 22, 561-567 (in Japanese with English summary).
Keywords: road runoff; road sediment; genotoxicity; growth inhibition; acute toxicity
Strain(s): 35 
Onodera, H., Oshima, Y., Watanabe, M. F., Watanabe, M., Bolch, C. J., Blackburn, S., Yasumoto, T. 1996 Screening of paralytic shellfish toxins in freshwater cyanobacteria and chemical confirmation of the toxins in cultured Anabaena circinalis from Australia. In Intergovernmental Oceanographic Commissions of UNESCO, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., pp. 563-566.
Strain(s): 1063106810791084109010931099 
Onyshchenko, A., Roberts, W. R., Ruck, E. C., Lewis, J. A., Alverson, A. J. 2021 The genome of a nonphotosynthetic diatom provides insights into the metabolic shift to heterotrophy and constraints on the loss of photosynthesis. New Phytol., 232, 1750-1764.
Keywords: apochloritic; B-ketoadipate pathway; Entner-Doudoroff Pathway; glycolysis; lignin; mixotrophy; oxidative pentose phosphate pathway; photosynthesis
Strain(s): 3581 
PubMed: 34379807
DOI: 10.1111/nph.17673
Onyshchenko, A., Ruck, E. C., Nakov, T., Alverson, A. J. 2019 A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta). Am. J. Bot., 106, 560-572.
Keywords: Nitzschia; apochloritic; chloroplast; photosynthesis; phylogeny; plastid
Strain(s): 3581 
PubMed: 30958893
DOI: 10.1002/ajb2.1267
Ooi, T., Kusumi, T., Kakisawa, H., Watanabe, M. M. 1989 Structure of cyanoviridin RR, a toxin from the blue-green alga, Microcystis viridis. J. Appl. Phycol., 1, 31-38.
Keywords: blue-green alga; Microcystis viridis; cyanoviridin RR; microcystin RR, toxins
Strain(s): 102 
Örs, E. D., Alkan, S. B., Öksüz, A. 2022 Possible effect of astaxanthin on obesity-related increased COVID-19 infection morbidity and mortality. Curr. Nutr. Food Sci., 18, 265-273.
Keywords: Haematococcus pluvialis; Obesity; adipose tissue; astaxanthin; coronavirus disease 2019; inflammation
Strain(s): 144 
DOI: 10.2174/1573401317666211011105732
Osafune, T. 1973 Three-dimensional structures of giant mitochondria, dictyosomes and “concentric lamellar bodies” formed during the cell cycle of Euglena gracilis (Z) in synchronous culture. J. Electron Microscopy, 22, 51-61.
Strain(s): 48 
Osafune, T., Ehara, T., Ito, A., Hase, E. 1990 Incorporation of cytoplasmic structures by developing proplastids in dark-grown Euglena gracilis cells transferred to an inorganic medium in darkness. J. Electr. Microsc., 39, 168-171.
Keywords: Euglena gracilis; dark proplastid development; incorporation; cytoplasmic structure
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a050798
Osafune, T., Ehara, T., Sumida, S., Hase, E. 1985 Interactions between the nucleus and cytoplasmic organelles durihg the cell cycle of Euglena gracilis in synchronized cultures. II. Associations between the nucleus and chloroplasts at an early stage of the cell cycle under photoautotrophic conditions. Plant Cell Physiol., 26, 263-270.
Keywords: cell cycle; chloroplast nucleoid; chloroplast-nucleus connection; chromosome; Euglena gracilis
Strain(s): 48 
Osafune, T., Ehara, T., Tahara, M., Hase, E. 1990 Effects of blue and red light on chloroplast development in dark-grown wax-rich cells of Euglena gracilis transferred to inorganic medium. J. Electr. Microsc., 39, 254-259.
Keywords: Euglena gracilis; blue and red light; chloroplast development
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a050812
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1972 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. I. Some characteristics of changes in subcellular structures during the cell cycle, especially in formation of giant mitochondria. Plant Cell Physiol., 13, 211-227.
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a074732
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1972 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. II. Association of mitochondria and the chloroplast at an early developmental stage. Plant Cell Physiol., 13, 981-989.
Strain(s): 2235 
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Electron microscope studies on the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. III. Three-dimensional structures of mitochondria in the cells at intermediate stages of the growth phase of the cell cycle. J. Electr. Microsc., 24, 247-252.
Strain(s): 2235 
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. I. Some characteristics of changes in the morphology of mitochondria and oxygen-uptake activity of cells. Plant Cell Physiol., 16, 313-326.
Strain(s): 48 
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. II. Modes of division of giant mitochondria. J. Electron Microscopy, 24, 33-39.
Strain(s): 48 
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1975 Formation and division of giant mitochondria during the cell cycle of Euglena gracilis Z in synchronous culture. III. Three-dimensional structures of mitochondria after division of giant forms. J. Electron Microscopy, 24, 283-286.
Strain(s): 48 
Osafune, T., Mihara, S., Hase, E., Ohkuro, I. 1976 Electron microscope studies of the vegetative cellular life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture. IV. Mitochondria in dividing cells. J. Electr. Microsc., 25, 261-269.
Strain(s): 2235 
Osafune, T., Schiff. J. A., Hase, E. 1990 Immunogold localization of LHCP II apoprotein in the Golgi of Euglena. Cell Struct. Funct., 15, 99-105.
Keywords: Euglena; Golgi apparatus; immunogold localization; LHCP II
Strain(s): 48 
DOI: 10.1247/csf.15.99
Osafune, T., Sumida, S., Ehara, T., Hase, E. 1989 Three-dimensional distribution of ribulose-1,5-bisphosphate carboxylase/oxygenase in chloroplasts of actively photosynthesizing cell of Euglena gracilis. J. Electr. Microsc., 38, 399-402.
Keywords: Euglena gracilis Z; immunoelectron microscopy; chloroplast; RuBisCO; three-dimensional distribution
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a050755
Osafune, T., Sumida, S., Ehara, T., Kodama, M., Hase, E. 1990 Immunoelectron microscopic evidence for the occurrence of ribulose 1,5-bisphosphate carboxylase/oxygenase in "propyrenoids" of Euglena gracilis. J. Electr. Microsc., 39, 101-104.
Keywords: chloroplast development; Euglena; propyrenoid; ribulose-1,5-bisphosphate carboxylase/oxygenase; immunocytochemistry
Strain(s): 48 
DOI: 10.1093/oxfordjournals.jmicro.a050782
Osafune, T., Yokota, A., Sumida, S., Hase, E. 1990 Immunogold localization of ribulose-1,5-bisphosphate carboxylase with reference to pyrenoid morphology in chloroplasts of synchronized Euglena gracilis cells. Plant Physiol., 92, 802-808.
Strain(s): 48 
PubMed: 16667352
DOI: 10.1104/pp.92.3.802
Ota, S. & Kawano, S. 2017 Extraction and Molybdenum Blue-based Quantification of Total Phosphate and Polyphosphate in Parachlorella. Bio-protocol, 7, e2539 (article ID).
Keywords: Alga; Chlorella; Parachlorella; Phosphorus; Polyphosphate; Molybdenum blue reaction
Strain(s): 2152 
DOI: 10.21769/BioProtoc.2539
Ota, S. & Vaulot, D. 2012 Lotharella reticulosa sp. nov.: a highly reticulated network forming chlorarachniophyte from the Mediterranean Sea. Protist, 163, 91-104.
Keywords: chlorarachniophytes; Lotharella; Mediterranean Sea; RCC375, RCC376; taxonomy
Strain(s): 2584 
PubMed: 21497132
DOI: 10.1016/j.protis.2011.02.004
Ota, S., Fuchida, S., Yamaguchi, H., Yamagishi, T., Yamamoto, H., Koshikawa, H., Kawachi, M. 2022 Propidium iodide staining and flow cytometry-based assessment of heavy metal impact on marine phytoplankton. Cytologia, 87, 177-187.
Keywords: Cyanobacteria; Deep-sea mining; Flow cytometry; Heavy metal contaminant; Microalgae; On-chip sort
Strain(s): 9699812670 
DOI: 10.1508/cytologia.87.177
Ota, S., Matsuda, T., Takeshita, T., Yamazaki, T., Kazama, Y., Abe, T., Kawano, S. 2013 Phenotypic spectrum of Parachlorella kessleri (Chlorophyta) mutants produced by heavy-ion irradiation. Bioresour. Technol., 149, 432-438.
Keywords: Algae; Breeding; Parachlorella; Heavy-ion irradiation; Mutation
Strain(s): 2152 
PubMed: 24135567
DOI: 10.1016/j.biortech.2013.09.079
Ota, S., Oshima, K., Yamazaki, T., Kim, S., Yu, Z., Yoshihara, M., Takeda, K., Takeshita, T., Hirata, A., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2016 Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure. Biotechnol. Biofuels, 9, 13 (article ID).
Keywords: Genome; Green alga; Lipid body; Parachlorella kessleri; RNA-seq; Whole-genome sequence; Transcriptome; 3D-TEM
Strain(s): 2152 
PubMed: 26811738
DOI: 10.1186/s13068-016-0424-2
Ota, S., Oshima, K., Yamazaki, T., Takeshita, T., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2019 The Parachlorella genome and transcriptome endorse active RWP-RK, meiosis and flagellar genes in trebouxiophycean algae. Cytologia, 84, 323-330.
Keywords: Evolution; Flagellum; MID; Meiosis; Parachlorella; RWP-RK
Strain(s): 2152 
DOI: 10.1508/cytologia.84.323
Ota, S., Yamaguchi, H., Vanel, F., Fuchida, S., Koshikawa, H., Yamagishi, T., Yamamoto, H., Kawachi, M. 2020 Differential heavy metal sensitivity in seven algal species from the NIES culture collection based on delayed fluorescence assays. Phycol. Res., 68, 41-49.
Strain(s): 9699719811001131025872670 
DOI: 10.1111/pre.12403
Ota, S., Yoshihara, M., Yamazaki, T., Takeshita, T., Hirata, A., Konomi, M., Oshima, K., Hattori, M., Bišová, K., Zachleder, V., Kawano, S. 2016 Deciphering the relationship among phosphate dynamics, electron-dense body and lipid accumulation in the green alga Parachlorella kessleri. Sci Rep, 6, 25731 (article ID).
Strain(s): 2152 
PubMed: 27180903
DOI: 10.1038/srep25731
Ota, S., Yoshimura, K., Kosugi, C., Kawano, S. 2023 Taxonomic and physiological studies of Parachlorella kimitsuensis sp. nov. (Trebouxiophyceae), which shows high ammonium tolerance. Algal Res., 71, 103054 (article ID).
Keywords: Chlorella; Halophiles; High ammonium; Parachlorella, Parachlorella kimitsuensis sp. nov.; Remediation; Steelmaking wastewater treatment
Strain(s): 2152216922732275 
DOI: 10.1016/j.algal.2023.103054
Otaki, R., Oishi, Y., Abe, S., Fujiwara, S., Sato, N. 2019 Regulatory carbon metabolism underlying seawater-based promotion of triacylglycerol accumulation in Chlorella kessleri. Bioresour. Technol., 289, 121686 (article ID).
Keywords: Carbon metabolism; Chlorella kessleri; Gene expression; Seawater-based biofuel; Triacylglycero
Strain(s): 2152 
PubMed: 31238290
DOI: 10.1016/j.biortech.2019.121686
Othman, F. S., Jamaluddin, H., Ibrahim, Z., Hara, H., Yahya, N. A., Iwamoto, K., Mohamad, S. E. 2019 Production of α-linolenic acid by an oleaginous green algae Acutodesmus obliquus isolated from Malaysia. J. Pure Appl. Microbiol., 13, 1297-1306.
Keywords: Acutodesmus obliquus; Chlorella sp.; Chlorella vulgaris; Lipid; Malaysia
Strain(s): 1269 
DOI: 10.22207/JPAM.13.3.01
Otsuka, S., Suda, S., Li, R., Matsumoto, S., Watanabe, M. M. 2000 Morphological variability of colonies of Microcystis morphospecies in culture. J. Gen. Appl. Microbiol., 46, 39-50.
Keywords: colony; cyanobacteria; Microcystis; morphology; phycoerythrin; pigment
Strain(s): 843901 
PubMed: 12483602
DOI: 10.2323/jgam.46.39
Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 1998 16S rDNA sequences and phylogenetic analyses of Microcystis strains with and without phycoerythrin. FEMS Mircobiol. Lett., 164, 119-124.
Keywords: cyanobacterium; Microcystis; 16S rDNA; taxonomy
Strain(s): 1054105510671072108510901143 
DOI: 10.1111/j.1574-6968.1998.tb13076.x
Otsuka, S., Suda, S., Li, R., Watanabe, M., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 1999 Phylogenetic relationships between toxic and non-toxic strains of the genus Microcystis based on 16S to 23S internal transcribed spacer sequence. FEMS Mircobiol. Lett., 172, 15-21.
Keywords: cyanobacteria; Microcystis; internal transcribed spacer; phylogeny; microcystin
Strain(s): 44104111105410551058106710681072108510861090109110921105111511171143 
PubMed: 10079523
DOI: 10.1111/j.1574-6968.1999.tb13443.x
Otsuka, S., Suda, S., Shibata, S., Oyaizu, H., Matsumoto, S., Watanabe, M. M. 2001 A proposal for the unification of five species of the cyanobacterial genus Microcystis Kützing ex Lemmermann 1907 under the rules of the Bacteriological Code. Int. J. Syst. Evol. Microbiol., 51, 873-879.
Keywords: cyanobacteria; DNA-DNA hybridization; Microcystis; taxonomy; unification
Strain(s): 843 
PubMed: 11411709
DOI: 10.1099/00207713-51-3-873
Otsuki, A., Watanabe, M. M., Sugahara, K. 1987 Chlorophyll pigments in methanol extracts from ten axenic cultured diatoms and three green algae as determined by reverse phase HPLC with fluorometric detection. J. Phycol., 23, 406-414.
Keywords: chlorophyll c complex; chlorophyll pigments; diatoms; field desorption mass spectrometry; methanol extracts; reverse phase HPLC
Strain(s): 165671157225534 
DOI: 10.1111/j.1529-8817.1987.tb02526.x
Oudot-Le Secq, M. P., Green, B. R. 2011 Complex repeat structures and novel features in the mitochondrial genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana. Gene, 476, 20-26.
Keywords: Stramenopile; Heterokont; Direct repeats; Translational frameshift; Gene fusion; Hairpin elements
Strain(s): 4392 
PubMed: 21320580
DOI: 10.1016/j.gene.2011.02.001
Oudot-Le Secq, M. P., Grimwood, J., Shapiro, H., Armbrust, E. V., Bowler, C., Green, B. 2007 Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Genet. Genomics, 277, 427–439.
Keywords: Chloroplast; Plastid; Genome; Secondary endosymbiosis; Diatom
Strain(s): 4392 
PubMed: 17252281
DOI: 10.1007/s00438-006-0199-4
Oyama, Y., Matsushita, B., Fukushima, T., Chen, J., Nagai, T., Imai, A. 2010 Testing the spectral decomposition algorithm (SDA) for different phytoplankton species by a simulation based on tank experiments. Int. J. Remote Sens., 31, 1605-1623.
Strain(s): 4475204803 
DOI: 10.1080/01431160903475365
Ozaki, K., Ito, E., Tanabe, S., Natsume, K., Tsuji, K., Harada, K. 2009 Electron microscopic study on lysis of a cyanobacterium Microcystis. J. Health Sci., 55, 578-585.
Keywords: cyanobacteria; scanning electron microscope; transmission electron microscope; morphological change; b-cyclocitral; L-lysine
Strain(s): 102298 
DOI: 10.1248/jhs.55.578
Ozaki, K., Ohta, A., Iwata, C., Horikawa, A., Tsuji, K., Ito, E., Ikai, Y., Harada, K-I. 2008 Lysis of cyanobacteria with volatile organic compounds. Chemosphere, 71, 1531-1538.
Keywords: Cyanobacteria; Lysis; Microorganism; Volatile compound; b-Cyclocitral
Strain(s): 73102103112298 
PubMed: 18179811
DOI: 10.1016/j.chemosphere.2007.11.052
Pan, H., Song, L., Liu, Y., Börner, T. 2002 Detection of hepatotoxic Microcystis strains by PCR with intact cells from both culture and environmental samples. Arch. Microbiol., 178, 421-427.
Keywords: Cyanobacteria; Microcystis; Microcystin; Toxin; Peptide synthetase; Whole-cell PCR
Strain(s): 429098101595610 
PubMed: 12420161
DOI: 10.1007/s00203-002-0464-9
Pancrace, C., Ishida, K., Briand, E., Pichi, D. G., Weiz, A. R., Guljamow, A., Scalvenzi, T., Sassoon, N., Hertweck, C., Dittmann, E., Gugger, M. 2019 Unique biosynthetic pathway in bloom-forming Cyanobacterial genus Microcystis jointly assembles cytotoxic aeruginoguanidines and microguanidines. ACS Chem. Biol., 14, 67-75.
Strain(s): 98843 
PubMed: 30556994
DOI: 10.1021/acschembio.8b00918
Pang, X., Nawrocki, W. J., Cardol, P., Zheng, M., Jiang, J., Fang, Y., Yang, W., Croce, R., Tian, L. 2023 Weak acids produced during anaerobic respiration suppress both photosynthesis and aerobic respiration. Nat. Commun., 14, 4207 (article ID).
Strain(s): 2499 
PubMed: 37452043
DOI: 10.1038/s41467-023-39898-0
Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M. 2016 A unique tryptophan c-prenyltransferase from the kawaguchipeptin biosynthetic pathway. Angew. Chem.-Int. Edit., 7, 3596-3599.
Strain(s): 88 
PubMed: 26846478
DOI: 10.1002/anie.201509920
Park, B. S., Baek, S. H., Ki, J.-S., Cattolico, R. A., Han, M.-S. 2012 Assessment of EvaGreen-based quantitative real-time PCR assay for enumeration of the microalgae Heterosigma and Chattonella (Raphidophyceae). J. Appl. Phycol., 24, 1555-1567.
Keywords: Raphidophyceae; Quantitative real-time PCR; EvaGreen; Field application
Strain(s): 293 
DOI: 10.1007/s10811-012-9816-2
Park, B. S., Kim, S., Kim. J.-H., Kim, J. H., Han, M.-S. 2019 Dynamics of Amoebophrya parasites during recurrent blooms of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters. Harmful Algae, 84, 119-126.
Keywords: Amoebophrya; Bloom dynamics; Cochlodinium polykrikoides ; Parasitism; Uantitative real-time PCR
Strain(s): 298 
PubMed: 31128796
DOI: 10.1016/j.hal.2019.02.001
Park, B. S., Park, C.-S., Shin, Y., Yoon, S., Han, M.-S., Kang, Y.-H. 2022 Different algicidal modes of the two bacteria Aeromonas bestiarum HYD0802-MK36 and Pseudomonas syringae KACC10292T against harmful cyanobacteria Microcystis aeruginosa. Toxins, 14, 128 (article ID).
Keywords: Microcystis aeruginosa; algicidal bacteria; Aeromonas bestiarum; Pseudomonas syringe; algicidal modes
Strain(s): 94298 
PubMed: 35202155
DOI: 10.3390/toxins14020128
Park, H-D. & Hayashi, H. 1994 Microcystis and microcystins [Microcystis zoku to mikuroshisuchin]. In Waterbloom of Blue-green Algae and Their Toxins [Aoko, sono shutsugen to dokuso], Eds. by Watanabe, M. F., Harada,K. & Fujii, H., University of Tokyo Press, pp. 75-99 (in Japanese).
Strain(s): 7374105310541055105910611063106410661067106810701071107210741076107710791080108110831084108510861090109110931095109710981099114011543349 
Park, H-D. & Watanabe, M. F. 1996 Toxic Microcystis in eutrophic lakes. In Toxic Microcystis, Eds. by Watanabe, M.F., Harada, K., Carmichael W.W. & Fujii, H., CRC Press, Boca Raton, pp. 57-77.
Strain(s): 737410631074107910851086109011543349 
Park, H-D., Watanabe, M. F., Harada, K., Nagai, H., Suzuki, M., Watanabe, M., Hayashi, H. 1993 Hepatotoxin (microcystin) and neurotoxin (anatoxin-a) contained in natural blooms and strains of cyanobacteria from Japanese freshwaters. Natural Toxins, 1, 353-360.
Keywords: Anabaena; anatoxin-a; neurotoxin; Microcystis; microcystin; hepatotoxin; natural bloom; strain; Japanese freshwaters; simultaneous analysis of anatoxin-a and microcystin
Strain(s): 73741063107410791085108610903349 
DOI: 10.1002/nt.2620010606
Park, J-W., Kim, S. H., Ito, T.,Fujii, T., Kim, S. Y., Laurell, T., Lee, S. W., Goda, K. 2016 Acoustofluidic harvesting of microalgae on a single chip. Biomicrofluidics, 10, 034119 (article ID).
Strain(s): 48 
PubMed: 27462380
DOI: 10.1063/1.4954744
Park, M.-H., Kim, B.-H., Chung, I. M., Hwang, S.-J. 2009 Selective bactericidal potential of rice (Oryza sativa L. var. japonica) full extract on Microcystis strain in comparison with green algae and zooplankton. Bull. Environ. Contam. Toxicol., 83, 97-101.
Keywords: Rice hull extract; Selective control; Microcystis aeruginosa; Green alga; Zooplankton
Strain(s): 298 
PubMed: 19434356
DOI: 10.1007/s00128-009-9732-6
Park, S. A., Jeong, H., J., Ok, J. H., Kang, H. C., You, J. H., Eom, S. H., Yoo, Y. D., Lee, M. J. 2021 Bioluminescence capability and intensity in the dinoflagellate Alexandrium species. Algae, 36, 299-314.
Keywords: harmful algal bloom; luciferase gene; luminescence; protist; red tide
Strain(s): 36114274 
DOI: 10.4490/algae.2021.36.12.6
Park, S. I., Cho, C. H., Ciniglia, C., Huang, T.-Y., Liu, S.-L., Bustamante, D. E., Calderon, M. S., Mansilla, A., McDermott, T., Andersen, R. A., Yoon, H. S. 2023 Revised classification of the Cyanidiophyceae based on plastid genome data with descriptions of the Cavernulicolales ord. nov. and Galdieriales ord. nov. (Rhodophyta). J. Phycol., 59, 444-466.
Keywords: “cave Cyanidium”; Cyanidiales; organelle genome; phylogeny; Rhodophyta; taxonomy
Strain(s): 3638 
PubMed: 36792488
DOI: 10.1111/jpy.13322
Park, S., Lee, S., Kim, H. S., Choi, H. J., Jeong, O. C., Lin, R., Cho, Y., Lee, M.-H. 2022 Square microchannel enables to focus and orient ellipsoidal Euglena gracilis cells by two-dimensional acoustic standing wave. Microchim. Acta, 189, 331 (article ID).
Keywords: Acoustofluidics; Microalgae; Acoustic focusing; Microfluidics; Flow cytometry
Strain(s): 48 
PubMed: 35969307
DOI: 10.1007/s00604-022-05439-7
Partensky, F., Hoepffner, N., Li, W. K. W., Ulloa, O., Vaulot, D. 1993 Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains isolated from the North Atlantic and the Mediterranean Sea. Plant Physiol., 101, 285-296.
Strain(s): 28802881 
PubMed: 12231684
DOI: 10.1104/pp.101.1.285
Partensky, F., Six, C., Ratin, M., Garczarek, L., Vaulot, D., Probert, I., Calteau, A., Gourvil, P., Marie, D., Grébert, T., Bouchier, C., Le Panse, S., Gachenot, M., Rodríguez, F., Garrido, J. L. 2018 A novel species of the marine cyanobacterium Acaryochloris with a unique pigment content and lifestyle. Sci Rep, 8, 9142 (article ID).
Strain(s): 3840 
PubMed: 29904088
DOI: 10.1038/s41598-018-27542-7
Pascual, G., Sano, D., Sakamaki, T., Nishimura, O. 2020 Effects of chemical interaction of nutrients and EDTA on metals toxicity to Pseudokirckneriella subcapitata. Ecotox. Environ. Safe., 203, 110966 (article ID).
Keywords: Metal toxicity; Nutrient metal; Non-nutrient metal; EDTA; Metal speciation
Strain(s): 35 
PubMed: 32678755
DOI: 10.1016/j.ecoenv.2020.110966
Patel, A. K., Singhania, R. R., Sim, S. J., Dong, C. D. 2021 Recent advancements in mixotrophic bioprocessing for production of high value microalgal products. Bioresour. Technol., 320, 124421 (article ID).
Keywords: Microalgae; Mixotrophic; MCS; Organic carbon; Photosynthesis; Bioproducts
Strain(s): 144 
PubMed: 33246239
DOI: 10.1016/j.biortech.2020.124421
Patel, A., Chaudhary, S., Alam Syed, B., Gami, B., Patel, P. 2018 Rbcl marker based approach for molecular identification of Arthrospira and Dunaliella isolates from non-axenic cultures. J. Genet. Genetic Engine, 2, 24-34.
Keywords: Arthrospira; Dunaliella; Microalgae; Molecular identification; non-axenic culture; rbcL gene marker
Strain(s): 637 
Pedersén, M. & DaSilva, E. J. 1973 Simple brominated phenols in the bluegreen alga Calothrix brevissima West. Planta, 115, 83-86.
Strain(s): 22 
PubMed: 24458820
DOI: 10.1007/BF00388608
Pelusi, A., Hanawa, Y., Araie, H., Suzuki, I., Giordan, M., Shiraiwa, Y. 2016 Rapid detection and quantification of haptophyte alkenones by Fourier transform infrared spectroscopy (FTIR). Algal Res., 19, 48-56.
Keywords: Alkenones; Alkenone-producing haptophyte; Emiliania huxleyi; FTIR; Lipid;trans-Carbon-carbon double bond
Strain(s): 837 
DOI: 10.1016/j.algal.2016.07.006
Peng, G., Martin, R.M., Dearth, S.P., Sun, X., Boyer, G.L., Campagna, S.R., Lin, S., Wilhelm, S.W. 2018 Seasonally relevant cool temperatures interact with N chemistry to increase microcystins produced in lab cultures of Microcystis aeruginosa NIES-843. Environ. Sci. Technol., 52, 4127-4136.
Strain(s): 843 
PubMed: 29522323
DOI: 10.1021/acs.est.7b06532
Peng, H., Wei, D., Chen, G., Chen, F. 2016 Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169. Biotechnol. Biofuels, 9, 151 (article ID).
Keywords: Coccomyxa subellipsoidea C-169; Elevated CO2; Lipid accumulation; Transcriptomic analysis; Phosphoenolpyruvate carboxylase; Pyruvate carboxylase; Carbamoyl-phosphate synthetase II; Ferredoxin; Vacuolar; H+-ATPase
Strain(s): 2166 
PubMed: 27453726
DOI: 10.1186/s13068-016-0571-5
Pengfei, J., Wang, H., Huang, W., Liu, W., Fan, Y., Miao, W. 2018 The allelopathic effect and safety evaluation of 3,4-Dihydroxybenzalacetone on Microcystis aeruginosa. Pest. Biochem. Physiol., 147, 145-152.
Keywords: Antibacterial; DBL; Phenolic acids; Microcystis aeruginosa; Environmental friendly
Strain(s): 843 
PubMed: 29933985
DOI: 10.1016/j.pestbp.2017.08.011
Petersen, J., Ludewig, A. K., Michael, V., Bunk, B., Jarek, M., Baurain, D., Brinkmann, H. 2014 Chromera velia, endosymbioses and the rhodoplex hypothesis--plastid evolution in cryptophytes, alveolates, stramenopiles, and haptophytes (CASH lineages). Genome Biol. Evol., 6, 666-684.
Keywords: next-generation sequencing; eukaryote-to-eukaryote endosymbioses; horizontal and endosymbiotic gene transfer; chromalveolate hypothesis; long-branch attraction artifacts
Strain(s): 4391 
PubMed: 24572015
DOI: 10.1093/gbe/evu043
Pfaff, S., Borchhardt, N., Boy, J., Karsten, Ulf., Gustavs, L. 2016 Desiccation tolerance and growth-temperature requirements of Coccomyxa (Trebouxiophyceae, Chlorophyta) strains from Antarctic biological soil crusts. Algol. Stud., 151/152, 3-19.
Keywords: Antarctica; biological soil crusts; ecophysiology; desiccation; cold adaptation; endemis
Strain(s): 2166 
DOI: 10.1127/algol_stud/2016/0245
Pham, T., Shimizu, K., Dao, T., Hong-Do, L., Utsumi, M. 2015 Microcystin uptake and biochemical responses in the freshwater clam Corbicula leana P. exposed to toxic and non-toxic Microcystis aeruginosa: Evidence of tolerance to cyanotoxins. Toxicology Report, 2, 88-98.
Keywords: Bioaccumulation; Biochemical response; Corbicula leana; Microcystins; Toxic and non-toxic
Strain(s): 10110862170 
DOI: 10.1016/j.toxrep.2015.01.012
Pham, T.-L., Bui, M. H., Driscoll, M., Shimizu, K., Motoo, U. 2020 First report of geosmin and 2-methylisoborneol (2-MIB) in Dolichospermum and Oscillatoria from Vietnam. Limnology, 22, 43–56.
Keywords: Off-flavour compounds; Taste and odour; Tropical water; Cyanobacteria
Strain(s): 19338181416481879 
DOI: 10.1007/s10201-020-00630-2
Pham, T.-L., Tran, T. H. Y., Hoang, N. S., Ngo, X. Q., Tran, T. T. 2020 Co-occurrence of microcystin-and geosminproducing cyanobacteria in the Tri An Reservoir, a drinking-water supply in Vietnam. Fundam. Appl. Limnol., 193, 299-311.
Keywords: taste and odor; off-flavor compound; earthy/muddy smell; cyanotoxin
Strain(s): 102 
DOI: 10.1127/fal/2020/1296
Pham, T.-L., Tran, T. H. Y., Shimizu, K., Li, Q., Utsumi, M. 2021 Toxic cyanobacteria and microcystin dynamics in a tropical reservoir: assessing the influence of environmental variables. Environ. Sci. Pollut. Res., 28, 63544–63557.
Keywords: Harmful algae bloom; Cyanotoxins; Real-time PCR; Sediment
Strain(s): 101102 
PubMed: 32948940
DOI: 10.1007/s11356-020-10826-9
Phan, C.-S., Matsuda, K., Balloo, N., Fujita, K., Wakimoto, T., Okino, T. 2021 Argicyclamides A–C Unveil Enzymatic Basis for Guanidine Bis-prenylation J. Am. Chem. Soc., 143, 10083–10087.
Strain(s): 88 
PubMed: 34181406
DOI: 10.1021/jacs.1c05732
Phua, Y. H., Husnik, F., Lemer, S., Wakeman, K. C. 2022 Phylogeny of Amphidinium (Dinophyceae) from Guam and Okinawa, with descriptions of A. pagoense sp. nov. and A. uduigamense sp. nov. Phycologia, 61, 241-254.
Keywords: Biodiversity; Epiphytic dinoflagellates; Microalgae; Molecular phylogeny; Taxonomy
Strain(s): 45454605460646074608 
DOI: 10.1080/00318884.2022.2033948
Phua, Y. H., Roy, M. C., Lemer ,S., Husnik, F., Wakeman, K. C. 2021 Diversity and toxicity of Pacific strains of the benthic dinoflagellate Coolia (Dinophyceae), with a look at the Coolia canariensis species complex. Harmful Algae, 109, 102120 (article ID).
Keywords: Cooliatoxin; Cryptic species; Harmful algal bloom; High-resolution MS; Phylogeny; Taxonomy
Strain(s): 3637 
PubMed: 34815025
DOI: 10.1016/j.hal.2021.102120
Pietramellara, G. 2023 Mechanisms involved in exopolymers (exopolysaccharides and exoproteins) secretion in biocrust and biofilm forming cyanobacteria as a response to dehydration. PhD thesis, Università degli Studi di Firenze, Italy, 135 pp.
Strain(s): 19562121 
Pilátová, J., Pánek, T., Oborník, M., Čepička, I., Mojzeš, P. 2022 Revisiting biocrystallization: purine crystalline inclusions are widespread in eukaryotes. ISME J., 16, 2290-2294.
Strain(s): 673039951604214622852860 
PubMed: 35672454
DOI: 10.1038/s41396-022-01264-1
Piligaeva, A.V., Sorokinaab, K.N., Shashkovab, M.V., Parmon, V.N. 2018 Screening and comparative metabolic profiling of high lipid content microalgae strains for application in wastewater treatment. Bioresour. Technol., 250, 538-547.
Keywords: Microalgae; Wastewater; Metabolic profiling; Lipid metabolism
Strain(s): 21642280 
PubMed: 29197777
DOI: 10.1016/j.biortech.2017.11.063
Pisapia, F., Holland, W. C., Hardison, D. R., e Litake, R. W., Fraga, S., Nishimura, T., Adachi, M., Nguyen-Ngoc, L., Séchet, V., Amzil, Z., Herrenknecht, C., Hess, P. 2017 Toxicity screening of 13 Gambierdiscus strains using neuro-2a and erythrocyte lysis bioassays. Harmful Algae, 63, 173-183.
Keywords: Ciguatera fish poisoning; Gambierdiscus; Ciguatoxins; Maitotoxins; Neuro-2a assay; Erythrocyte lysis assay
Strain(s): 4118 
PubMed: 28366392
DOI: 10.1016/j.hal.2017.02.005
Pisapia, F., Sibat, .M., Herrenknecht, C., Lhaut, K., Gaiani, G., Ferron, P., Fessard, V., Fraga, S., Nascimento, S. M., Litaker, R. W., Holland, W. C., Roullier, C., Hess, P. 2017 Maitotoxin-4, a novel MTX analog produced by Gambierdiscus excentricus. Mar. Drugs, 15, 220 (article ID).
Keywords: Gambierdiscus excentricus; maitotoxin-4; bioguided fractionation; size-exclusion chromatography (LH-20); neuro-2a (N2a) assay; LC-HRMS/MS (Q-Tof 6550); LC-LRMS/MS (API4000 QTrap)
Strain(s): 41184119 
PubMed: 28696398
DOI: 10.3390/md15070220
Pjon, C.-J. & Fujita, Y. 1973 Immunological identification of pigment component of a photochemically active chromoprotein (ACP) isolated from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 14, 201-205.
Strain(s): 19 
Pjon, C.-J. & Fujita, Y. 1974 The separation and characterization of the photoreactive component of a photochemically active chromoprotein (ACP) obtained from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 15, 789-797.
Strain(s): 19 
Pjon, C.-J., Suzuki, R., Fujita, Y. 1972 Photochemical activity fluorescence and absorption spectrum of the photochemically active chromoprotein (ACP) isolated from the blue-green alga Anabaena cylindrica. Plant Cell Physiol., 13, 437-447.
Strain(s): 19 
Poli, M., Ruiz-Olvera, P., Nalca, A., Ruiz, S., Livingston, V., Frick, O., Dyer, D., Schellhase C., Raymond, J., Kulis, D., Anderson, D., McGrath, S., Deeds, J. 2018 Toxicity and pathophysiology of palytoxin congeners after intraperitoneal and aerosol administration in rats. Toxicon, 150, 235-250.
Keywords: Palytoxin congeners; Intraperitoneal administration; Aerosol administration; Lethality; Tissue histopathology; Rats
Strain(s): 3351 
PubMed: 29902540
DOI: 10.1016/j.toxicon.2018.06.067
Pollner, E., Farré, E. M., Bennlng, C. 2018 Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp. Plant Cell Reports, 37, 1383-1399.
Keywords: Nannochloropsis; Algal biotechnology; Marker-free engineering; Gene stacking; Synthetic biology; Episomes
Strain(s): 21452146 
PubMed: 29511798
DOI: 10.1007/s00299-018-2270-0
Pombert, J. F., Beauchamp, P., Otis, C., Lemieux, C., Turmel, M. 2006a The complete mitochondrial DNA sequence of the green alga Oltmannsiellopsis viridis: evolutionary trends of the mitochondrial genome in the Ulvophyceae. Curr. Genet., 50, 137-147.
Keywords: green algae; mitochondrial genome evolution; horizontal DNA transfers; introns; repeated sequences
Strain(s): 360 
PubMed: 16721603
DOI: 10.1007/s00294-006-0076-z
Pombert, J.-F., Lemieux, C., Turmel, M 2006b The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes. BMC Biol., 4, 3 (article ID).
Strain(s): 360 
PubMed: 16472375
DOI: 10.1186/1741-7007-4-3
Poonkum, W., Powtongsook, S., Pavasant, P. 2015 Astaxanthin induction in microalga H. pluvialis with flat panel airlift photobioreactors under indoor and outdoor conditions. Prep. Biochem. Biotechnol., 45, 1-17.
Keywords: carotenoid; Haematococcus pluvialis; mature cyst; microalgae; pigment; scale-up
Strain(s): 144 
PubMed: 25105532
DOI: 10.1080/10826068.2013.867871
Popin, R. V., Delbaje, E., Abreu, V.A.C., Rigonato, J., Dörr, F.A., Pinto, E., Sivonen, K., Fiore, M.F. 2020 Genomic and metabolomic analyses of natural products in Nodularia spumigena isolated from a shrimp culture pond. Toxins, 12, 141 (article ID).
Keywords: cyanobacteria; gene cluster; mass spectrometry; cyanotoxins; terpenes; water quality
Strain(s): 3585 
PubMed: 32106513
DOI: 10.3390/toxins12030141
Pound, H. L. & Wilhelm, S. W. 2020 Tracing the active genetic diversity of Microcystis and Microcystis phage through a temporal survey of Taihu. PLoS One, 15, e0244482 (article ID).
Strain(s): 88843 
PubMed: 33370358
DOI: 10.1371/journal.pone.0244482
Pozzer, A. C.,Gómez, P. A., Weiss, J. 2022 Volatile organic compounds in aquatic ecosystems - Detection, origin, significance and applications. Sci. Total Environ., , 156155 (article ID).
Keywords: VOCs; Aquatic microorganisms; Marine and freshwater environments; Ecological impacts; Infochemicals; Bioindicators
Strain(s): 843 
PubMed: 35609693
DOI: 10.1016/j.scitotenv.2022.156155
Pratte, B. S. & Thiel, T. 2021 Comparative genomic insights into culturable symbiotic cyanobacteria from the water fern Azolla. Microb. Genomics, 7, 000595 (article ID).
Strain(s): 253275 
PubMed: 34181515
DOI: 10.1099/mgen.0.000595
Praveenkumar, R., Lee, J., Vijaya, D., Lee, S. Y., Lee, K., Sim, S. J., Hong, M. E., Kim, Y.-E., Oh, Y.-K. 2020 Morphological change and cell disruption of Haematococcus pluvialis cyst during high-pressure homogenization for astaxanthin recovery. Appl. Sci., 10, 513 (article ID).
Keywords: Haematococcus pluvialis; high-pressure homogenization; astaxanthin; cyst; cell disruption
Strain(s): 144 
DOI: 10.3390/app10020513
Přibyl, P. & MProcházková, L. 2023 Trebonskia zoosporica, gen. et sp. nov., a new member of the Goniochloridales (Eustigmatophyceae, Stramenopiles) with an unusual mode of reproduction. Eur. J. Phycol., 58, 199-213.
Keywords: 18S rRNA; Eustigmatophyceae; fatty acids; Goniochloridales; rbcL; Trebonskia zoosporica; zoospores
Strain(s): 2860 
DOI: 10.1080/09670262.2022.2089913
Price, D. C., Steiner, J. M., Yoon, H. S., Bhattacharya, D., Löffelhardt, W. 2017 Glaucophyta In Handbook of the protists, 2nd ed. , Eds. by Archibald, J. M., Simpson, A. G. B., Slamovits, C. H., Springer, pp. 1-65.
Keywords: Archaeplastida; Cyanophora paradoxa; Muroplasts; Single primary endosymbiotic event; Phylogenomics; Carbon-concentrating mechanism; Eukaryotic peptidoglycan; Phycobilisomes
Strain(s): 5477637649661369196121413645 
DOI: 10.1007/978-3-319-32669-6_42-1
Procházková, L., Matsuzaki, R., Řezanka, T., Nedbalová, L., Remias, D. 2023 The snow alga Chloromonas kaweckae sp. nov. (Volvocales, Chlorophyta) causes green surface blooms in the High Tatras (Slovakia) and tolerates high irradiance. J. Phycol., 59, 236-248.
Keywords: biodiversity; cryoflora; environmental sample; fatty acids; fluorometry; vegetative stages
Strain(s): 2379375342844476 
PubMed: 36461636
DOI: 10.1111/jpy.13307
Pröschold, T. & Darienko, T. 2020 Choricystis and Lewiniosphaera gen. nov. (Trebouxiophyceae Chlorophyta), two different green algal endosymbionts in freshwater sponges. Symbiosis, 82, 175-188.
Keywords: Choricystis; Lewiniosphaera; Freshwater sponges; Endosymbiosis
Strain(s): 21672171234240334292 
PubMed: 33328698
DOI: 10.1007/s13199-020-00711-x
Pröschold, T., Darienko, T. 2018 The distinctions between Chlamydomonas incerta Pascher and Chlamydomonas globosa J.W. Snow and their taxonomic consequences. Notulae Algarum, 56 1-4.
Strain(s): 2462 
Pröschold, T., Darienko, T., Krienitz, L., Coleman, A. W. 2018 Chlamydomonas schloesseri sp. nov. (Chlamydophyceae, Chlorophyta) revealed by morphology, autolysin cross experiments, and multiple gene analyses. Phytotaxa, 362, 21-38.
Keywords: integrative taxonomy; Chlamydomonas; intraspecific variation; species concept; DNA barcoding
Strain(s): 2462 
DOI: 10.11646/phytotaxa.362.1.2
Pröschold, T., Harris, E. H., Coleman, A. W. 2005 Portrait of a species: Chlamydomonas reinhardtii. Genetics, 170, 1601-1610.
Keywords: Chlamydomonas; Internal Transcribed Spacer; phylogenetics; population genetics; ribosomal cistrons
Strain(s): 22372238 
PubMed: 15956662
DOI: 10.1534/genetics.105.044503
Pröschold, T., Pitsch, G., Darienko, T. 2020 Micractinium tetrahymenae (Trebouxiophyceae, Chlorophyta), a new endosymbiont isolated from ciliates. Diversity-Basel, 12, 200 (article ID).
Keywords: Micractinium tetrahymenae; Tetrahymena; Utricularia; facultative endosymbiosis; ciliate-algae symbiosis
Strain(s): 216721714033 
DOI: 10.3390/d12050200
Purba, L. D. A., Othman, A., Yuzir, A., Mohamad, S. V., Iwamoto, K., Abdullah, N., Shimizu, K., Hermana, J. 2022 Enhanced cultivation and lipid production of isolated microalgae strains using municipal wastewater. Environ. Technol. Innov., 27, 102444 (article ID).
Keywords: Microalgae; Municipal wastewater; Nutrient removal; Lipid production
Strain(s): 1269 
DOI: 10.1016/j.eti.2022.102444
Qian, J., Liu, X, Ban, S, Fujiwara, M, Kodera, T, Akizuki, S, Toda, T. 2020 pH treatments in continuous cultivation to maximize microalgal production and nutrient removal from anaerobic digestion effluent of aquatic macrophytes. J. Appl. Phycol., 32, 3349–3362.
Keywords: Biomass recovery; Flow-through cultivation; Nutrient removal; pH control; Mg availability; Bio-digester effluent
Strain(s): 2173 
DOI: 10.1007/s10811-020-02196-z
Qian, J., Shimotori, K., Liu, X., Ban, S., Akizuki, S., Fujiwara, M., Kodera, T., Toda, T., Imai, A. 2021 Enhancement of algal growth by Mg2+ released from anaerobic digestion effluent of aquatic macrophytes through photolysis. Biochem. Eng. J., 172, 108065 (article ID).
Keywords: Ultraviolet photolysis; DOM degradation; DOM molecular size distribution; Mg availability; Bio-digester effluent
Strain(s): 2173 
DOI: 10.1016/j.bej.2021.108065
Qin, L., Liu, L., Wang, Z., Chen, W., Wei, D. 2018 Efficient resource recycling from liquid digestate by microalgae-yeast mixed culture and the assessment of key gene transcription related to nitrogen assimilation in microalgae. Bioresour. Technol., 264, 90-97.
Keywords: Chlorella vulgaris; Digestate; Mixed culture; Yarrowia lipolytica
Strain(s): 227 
PubMed: 29793118
DOI: 10.1016/j.biortech.2018.05.061
Qin, L., Wei, D., Wang, Z., Alam, M. A. 2019 Advantage assessment of mixed culture of Chlorella vulgaris and Yarrowia lipolytica for treatment of liquid digestate of yeast industry and cogeneration of biofuel feedstock. Appl. Biochem. Biotechnol., 187, 856–869.
Keywords: Mixed culture; Chlorella vulgaris; Yarrowia lipolytica; Yeast industrial wastewater; Liquid digestate
Strain(s): 227 
PubMed: 30088243
DOI: 10.1007/s12010-018-2854-8
Qiu, X., Chen, C., Shimasaki, Y., Mukai, K., Teramoto, A., Wu, M., Oshima, Y. 2020 Time-series responses in photosynthetic activity, 2-cysteine peroxiredoxin gene expression, and proteomics of Chattonella marina var. antiqua under different oxidative stress. Harmful Algae, 94, 101808 (article ID).
Keywords: 2-cysteine peroxiredoxin; Chattonella marina var. antiqua; Exogenous H2O2 stress; Photosynthesis; Proteomics; Reactive oxygen species
Strain(s): 1 
PubMed: 32414504
DOI: 10.1016/j.hal.2020.101808
Qiu, X., Mukai, K., Shimasaki, Y., Wu, M., Chen, C., Lu, Y., Ichinose, H., Nakashima, T., Kato-Unoki, Y., Oshima, Y. 2020 Diurnal variations in expression of photosynthesis-related proteins in the harmful Raphidophyceae Chattonella marina var. antiqua. J. Exp. Mar. Biol. Ecol., 527, 151361 (article ID).
Keywords: Chattonella marina var. antiqua; Diurnal variations; Proteomics; Photosynthesis; Two-dimensional gel electrophoresis
Strain(s): 1 
DOI: 10.1016/j.jembe.2020.151361
Qiu, X., Shimasaki, Y., Yoshida, Y., Matsubara, T., Yamasaki, Y., Kawaguchi, M., Honda, M., Mouri, K., Nakajima, Y., Tasmin, R., Kuno, K., Kawamura, Y., Honjo, T., Oshima, Y. 2014 Allelopathic effects of Skeletonema spp. may influence interspecific competition and bloom formation of co–occurring harmful flagellates. J. Fac. Agr., Kyushu Univ., 59, 373-382.
Strain(s): 110324 
Qiu, XC., Shimasaki, Y., Tsuyama, M., Tamada, T., Kuwahara, R., Kawaguchi, M., Honda, M., Gunjikake, H., Tasmin, R., Shimizu, M., Sato, Y., Kato-Unoki, Y., Nakashima, T., Matsubara, T., Yamasaki, Y., Ichinose, H., Wariishi, H., Honjo, T., Oshima, Y. 2013 Growth-phase dependent variation in photosynthetic activity and cellular protein expression profile in the harmful Raphidophyte Chattonella antiqua. Biosci. Biotechnol. Biochem., 77, 46-52.
Keywords: Chattonella antiqua; growth potential; maximum quantum yield of photosystem II; physiological status; proteomic analysis
Strain(s): 1 
PubMed: 23291769
DOI: 10.1271/bbb.120543
Qiu, XC., Yamasaki, Y., Shimasaki, Y., Gunjikake, H., Honda, M., Kawagushi, M., Matsubara, T., Nagasoe, S., Etoh, T., Matsui, S., Honjo, T., Oshima, Y. 2012 Allelopathy of the raphidophyte Heterosigma akashiwo against the dinoflagellate Akashiwo sanguinea is mediated via allelochemicals and cell contact. Mar. Ecol. Prog. Ser., 446, 107-118.
Keywords: Heterosigma akashiwo; Akashiwo sanguinea; Allelopathy; Polysaccharide−protein complex; Cell contact; Growth interaction; Growth simulation
Strain(s): 10324 
DOI: 10.3354/meps09476
Qiu, XC., Yamasaki, Y., Shimasaki, Y., Gunjikake, H., Matsubara, T., Nagasoe, S., Etoh, T., Matsui, S., Honjo, T., Oshima, Y. 2011 Growth interactions between the raphidophyte Chattonella antiqua and the dinoflagellate Akashiwo sanguinea. Harmful Algae, 11, 81-87.
Keywords: Akashiwo sanguinea; Allelopathy; Cell contact; Chattonella antiqua; Growth interaction; Growth simulation
Strain(s): 1 
DOI: 10.1016/j.hal.2011.08.001
Quispe, C. F., Sonderman, O., Khasin, M., Riekhof, W. R., Van Etten, J. L., Nickerson, K. W. 2016 Comparative genomics, transcriptomics, and physiology distinguish symbiotic from free-living Chlorella strains. Algal Res., 18, 332-340.
Keywords: Chlorella variabilis; Alga-paramecium symbiosis; Algal nitrogen metabolism; Amino acid transporters
Strain(s): 25402541 
DOI: 10.1016/j.algal.2016.06.001
Rademacher, N., Wrobel, T. J., Rossoni, A. W., Kurz, S., Bräutigam, A., Weber, A. P. M., Eisenhut, M. 2017 Transcriptional response of the extremophile red alga Cyanidioschyzon merolaee to changes in CO2 concentrations. J. Plant Physiol., 217, 49-56.
Keywords: Cyanidioschyzon merolae; RNA-seq; CO2 limitation; Photorespiration
Strain(s): 3377 
PubMed: 28705662
DOI: 10.1016/j.jplph.2017.06.014
Rahman, D. Y, Sarian, F. D., van WijkM, A., Martinez-Garcia, M., van der Maarel, M. J. E. C. 2017 Thermostable phycocyanin from the red microalga Cyanidioschyzon merolae, a new natural blue food colorant. J. Appl. Phycol., 29, 1233–1239.
Keywords: Food colorant; Phycocyanin; Pigments; Red microalga; Cyanidioschyzon merolae
Strain(s): 1332 
PubMed: 28572707
DOI: 10.1007/s10811-016-1007-0
Rahman, M. M., Rahaman, M. S., Islam, M. R., Hossain, M. E., Mithi, FM., Ahmed, M., Saldías, M., Akkol, E. K., Sobarzo-Sánchez, E. 2021 Multifunctional therapeutic potential of phytocomplexes and natural extracts for antimicrobial properties. Antibiotics-Basel, 10, 1076 (article ID).
Keywords: natural products; phytocomplexes; antimicrobial activity; alkaloids; tannins; terpenoids
Strain(s): 204 
PubMed: 34572660
DOI: 10.3390/antibiotics10091076
Ramírez-Romero, A., Da Costa Magalhães, B., Dimitriades-Lemaire, A., Sassi, J.-F., Delrue, F., Steyer, J.-P. 2022 Chlorellaceae feedstock selection under balanced nutrient limitation. FERMENTATION, 8, 554 (article ID).
Keywords: biofuel; microalgal biomass; Chlorella; lipids
Strain(s): 2272173 
DOI: 10.3390/fermentation8100554
Ramírez-Romero, A., Martin, M., Boyer, A., Bolzoni, R., Matricon, L., Sassi, J.-F., Steyer, J.-P., Delrue, F. 2023 Microalgae adaptation as a strategy to recycle the aqueous phase from hydrothermal liquefaction. Bioresour. Technol., 371, 128631 (article ID).
Keywords: Microalgae adaptation; Adaptive laboratory evolution; Hydrothermal liquefaction; Aqueous phase recycling
Strain(s): 227 
PubMed: 36646358
DOI: 10.1016/j.biortech.2023.128631
Ramya, M., Kayalvizhi, M., Haripriya, G., Rathinasabapathi, P. 2018 Detection of microcystin-producing cyanobacteria in water samples using loop-mediated isothermal amplification targeting mcyB gene. 3 Biotech, 8, 378 (article ID).
Keywords: Microcystin synthetase; LAMP; Microcystin; Cyanobacteria; McyB
Strain(s): 843 
PubMed: 30148028
DOI: 10.1007/s13205-018-1402-0
Ranga Rao, A., Ravishankar, G. A., Sarada, R. 2012 Cultivation of green alga Botryococcus braunii in raceway, circular ponds under outdoor conditions and its growth, hydrocarbon production. Bioresour. Technol., 123, 528-533.
Keywords: Microalgae; Botryococcus braunii; Outdoor cultivation; Hydrocarbon; Fatty acids
Strain(s): 836 
PubMed: 22940364
DOI: 10.1016/j.biortech.2012.07.009
Ranjan, P. & Kateriya, S. 2018 Localization and dimer stability of a newly identifed microbial rhodopsin from apolar, non-motile green algae. BMC Res. Notes, 11, 65 (article ID).
Keywords: Coccomyxa subellipsoidea; Proton-pumping rhodopsin; Optogenetics; Localization of the microbial rhodopsin in eukaryotes; Chlorella vulgaris
Strain(s): 2166 
PubMed: 29361974
DOI: 10.1186/s13104-018-3181-4
Ranjbar, R., Inoue, R., Katsuda, T., Yamaji, H., Katoh, S. 2008 High efficiency production of astaxanthin in an airlift photobioreactor. J. Biosci. Bioeng., 106, 204-207.
Keywords: Haematococcus pluvialis; airlift bubble column; liquid circulation;nirate concentration; astaxanthin
Strain(s): 144 
PubMed: 18804066
DOI: 10.1263/jbb.106.204
Ranjbar, R., Inoue, R., Shiraishi, H., Katsuda, T., Katoh, S. 2008 High efficiency production of astaxanthin by autotrophic cultivation of Haematococcus pluvialis in a bubble column photobioreactor. Biochem. Eng. J., 39, 575-580.
Keywords: Haematococcus pluvialis; autotrophic culture; bubble column; Fed-batch; nitrate concentration astaxanthin
Strain(s): 144 
DOI: 10.1016/j.bej.2007.11.010
Ray, A., Nayak, M., Ghosh, A. 2022 A review on co-culturing of microalgae: A greener strategy towards sustainable biofuels production. Sci. Total Environ., 802, 149765 (article ID).
Keywords: Microalgae-fungi; Microalgae-yeast; Microalgae-bacteria; Co-cultivation; Biomass; Lipid
Strain(s): 227 
PubMed: 34454141
DOI: 10.1016/j.scitotenv.2021.149765
Reeb, V. C., Peglar, M. T., Yoon, H. S., Bai, J. R., Wu, M., Siu, P., Grafenberg, J. L., Reyes-Prieto, A., Rummele, S. E., Gross, J., Bhattacharya, D. 2009 Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists. Mol. Phylogenet. Evol., 53, 202–211.
Keywords: Chromalveolata; Multigene phylogenetics; Plastidophila; Rhizaria; Supergroup; Tree of life
Strain(s): 13341335 
PubMed: 19398025
DOI: 10.1016/j.ympev.2009.04.012
Reichert,M., Bergmann,S. M., Hwang, J., Buchholz, R., Lindenberger, C. 2017 Antiviral activity of exopolysaccharides from Arthrospira platensis against koi herpesvirus. J. Fish Dis., 40, 1441–1450.
Keywords: antiviral substances; exopolysaccharides; KHVD; koi herpesvirus
Strain(s): 39 
PubMed: 28422294
DOI: 10.1111/jfd.12618
Reid, E. L., Worthy, C. A., Probert, I., Ali, S.T., Love, J., Napier, J., Littlechild, J. A., Somerfield, P. J., Allen , M. J. 2011 Coccolithophores: functional biodiversity, enzymes and bioprospecting. Mar. Drugs., 9, 586-602.
Keywords: functional biodiversity; bioprospecting; biocatalysis; coccolithophore
Strain(s): 2697 
PubMed: 21731551
DOI: 10.3390/md9040586
Rekully, CM., Faulkner, ST., Lachenmyer, EM., Cunningham, BR., Shaw, TJ., Richardson, TL., Myrick, ML. 2017 Fluorescence excitation spectroscopy for phytoplankton species classification using an all-pairs method: Characterization of a system with unexpectedly low rank. Appl. Spectrosc., 72, 442-462.
Keywords: Chemometrics; classification; fluorescence; optical computing; optical filters; phytoplankton
Strain(s): 704 
PubMed: 29069908
DOI: 10.1177/0003702817741278
Religia, P., Kato, Y., Fukushima, E. O., Matsuura, T., Muranaka, T., Watanabe, H. 2019 Atrazine exposed phytoplankton causes the production of non-viable 2 offspring on Daphnia magna. Mar. Environ. Res., 145, 177-183.
Keywords: Atrazine; Daphnia magna; Raphidocelis subcapitata; Risk assessment; Sublethal effects
Strain(s): 35 
PubMed: 30797563
DOI: 10.1016/j.marenvres.2019.02.007
Repetti, S. I., Iha, C., Uthanumallian, K., Jackson, C. J., Chen, Y., Chan C. X., Verbruggen, H. 2022 Nuclear genome of a pedinophyte pinpoints genomic innovationand streamlining in the green algae. New Phytol., 233, 2144–2154.
Keywords: Chlorophyta; genome evolution; green algae; nuclear genome; pedinophyte; streamlining; UTC; Viridiplantae
Strain(s): 2566 
PubMed: 34923642
DOI: 10.1111/nph.17926
Reyes-Prieto, A., Russell, S., Figueroa-Martinez, F., Jackson, C. 2018 Chapter Four - Comparative Plastid Genomics of Glaucophytes. In Plastid Genome Evolution - Advances in Botanical Research, Eds. by Chaw, S.-M., Jansen, R. K., Academic press 85, pp. 95-127.
Keywords: Glaucophyta; Cyanophora; Glaucocystis; Archaeplastida; Plastid; Plastid genome; HGT
Strain(s): 763764 
DOI: 10.1016/bs.abr.2017.11.012
Rhee, JS., Choi, BS., Han, J., Hwang, SJ., Choi, IY., Lee, JS. 2012 Draft genome database construction from four strains (NIES-298, FCY-26, -27, and -28) of the Cyanobacterium Microcystis aeruginosa. J. Microbiol. Biotechnol., 22, 1208-1213.
Keywords: Cyanobacteria; Microcystis aeruginosa; genome
Strain(s): 298 
PubMed: 22814493
DOI: 10.4014/jmb.1112.12034
Rhee, JS., Ki, JS., Kim, BM., Hwang, SJ., Choi, IY., Lee, JS. 2012 HspA and HtpG Enhance Thermotolerance in the Cyanobacterium, Microcystis aeruginosa NIES-298. J. Microbiol. Biotechnol., 22, 118-125.
Keywords: Cyanobacteria; Microcystis aeruginosa; heat shock protein; thermotolerance
Strain(s): 298 
PubMed: 22297228
DOI: 10.4014/jmb.1108.08001
Rho, M. C., Matsunaga, K., Yasuda, K., Ohizumi, Y. 1996 A novel inhibitor of platelet aggregation from the Cyanophyceae Oscillatoria rosea (NIES-208). Planta Med., 62, 473-474.
Keywords: RABBIT PLATELETS; DINOFLAGELLATE
Strain(s): 208 
PubMed: 8923815
DOI: 10.1055/s-2006-957944
Rho, M.-C., Yasuda, K., Matsunaga, K., Ohizumi, Y. 1997 A monogalactopyranosyl acylglycerol from Oltmannsiellopsis unicellularis (NIES-359). Phytochemistry, 44, 1507-1509.
Keywords: Oltmannsiellopsis unicellularis; Chlorophyceae; marine alga; glycolipid; monogalactopyranosyl acylglycerol; platelet aggregation
Strain(s): 359 
DOI: 10.1016/S0031-9422(96)00736-4
Rickaby, R.E.M., Henderiks, J., Young, J.N. 2010 Perturbing phytoplankton: Response and isotopic fractionation with changing carbonate chemistry in two coccolithophore species. Clim. Past., 6, 771-785.
Strain(s): 2696 
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Riisberg, I., Edvardsen, B. 2008 Genetic variation in bloom-forming ichthyotoxic Pseudochattonella species (Dictyochophyceae, Heterokonta) using nuclear, mitochondrial and plastid DNA sequence data. Eur. J. Phycol., 43, 413-422.
Keywords: cox1; Dictyochophyceae; genetic variation; harmful algae; psbA; Pseudochattonella; rbcL; rDNA
Strain(s): 670 
DOI: 10.1080/06970260802299602
Ripken, C., Khalturin, K., Shoguchi, E. 2020 Response of coral reef dinoglagellates to nanoplastics under experimental conditions suggests downregulation of cellular metabolism. Microorganisms, 8, 1759 (article ID).
Keywords: nanoplastics; dinoflagellate; coral reef; Symbiodinium; Cladocopium; gene expression
Strain(s): 40764077 
PubMed: 33182359
DOI: 10.3390/microorganisms8111759
Robertson, B. R., Tezuka, N., Watanabe, M. M. 2001 Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content. Int. J. Syst. Evol. Microbiol., 51, 861-871.
Keywords: cyanobacteria; phycocyanin; phylogeny; 16S rDNA; Synechococcus
Strain(s): 937938939940941942943944945946947948949950951952953954955956957958959960961962963964965 
PubMed: 11411708
DOI: 10.1099/00207713-51-3-861
Rocap, G., Larimer, F. W., Lamerdin, J., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M., Hauser, L., Hess, W. R., Johnson, Z. I., Land, M., Lindell, D., Post, A. F., Regala, W., Shah, M., Shaw, S. L., Steglich, C., Sullivan, M. B., Ting, C. S., Tolonen, A., Webb, E. A., Zinser, E. R., Chisholm, S. W. 2003 Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature, 424, 1042-1047.
Strain(s): 28802887 
PubMed: 12917642
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Rockwell, N. C., Moreno, M. V., Martin, S. S., Lagarias, J. C. 2022 Protein–chromophore interactions controlling photoisomerization in red/green cyanobacteriochromes. Photochem. Photobiol. Sci., 21, 471–491.
Keywords: Cyanobacteriochrome; Photoisomerization; Evolution; Structure/function
Strain(s): 21 
PubMed: 35411484
DOI: 10.1007/s43630-022-00213-3
Rodríguez-Salinas, E., Riveros-Rosas, H., Li, ZK., Fučíková, K., Brand JJ., Lewis, LA., González-Halphen, D. 2012 Lineage-specific fragmentation and nuclear relocation of the mitochondrial cox2 gene in chlorophycean green algae (Chlorophyta). Mol. Phylogenet. Evol., 64, 166-176.
Keywords: Mitochondrial genes; Cytochrome oxidase; Chlorophyte algae; Chlorophyceae; Gene migration; Gene fragmentation
Strain(s): 360484 
PubMed: 22724135
DOI: 10.1016/j.ympev.2012.03.014
Rogers, J. E., Devereux, R., James, J. B., George, S. E., Forshay, K. J. 2021 Seasonal distribution of cyanobacteria in three urban eutrophic lakes results from an epidemic-like response to environmental conditions. Curr. Microbiol., 78, 2298-2316.
Strain(s): 843 
PubMed: 33904973
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Rokitta, S. D., de Nooijer, L. J., Trimborn, S., de Vargas, C., Rost, B., John, U. 2011 Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania huxleyi (Haptophyta) and reflect specialization to different ecological niches. J. Phycol., 47, 829-838.
Keywords: endocytosis; life-cycle stages; microarray; quantitative RT-PCR; transcriptome profiling
Strain(s): 2697 
PubMed: 27020019
DOI: 10.1111/j.1529-8817.2011.01014.x
Rosas-Santiago, P., Zechinelli Pérez, K., Gómez Méndez, M. F., Vera López Portillo, F., Ruiz Salas, J. L., Cordoba Martínez, E., Acosta Maspon, A., Pantoja, O. 2021 A differential subcellular localization of two copper transporters from the COPT family suggests distinct roles in copper homeostasis in Physcomitrium patens. Plant Physiol. Biochem., 167, 459-469.
Keywords: Copper transport; Copper uptake; COPT; Physcomitrium patens
Strain(s): 2285 
PubMed: 34418592
DOI: 10.1016/j.plaphy.2021.08.023
Rounge, T. B., Rohrlack, T., Kristensen, T., Jakobsen, K. S. 2008 Recombination and selectional forces in cyanopeptolin NRPS operons from highly similar, but geographically remote Planktothrix strains. BMC Microbiol., 8, 141 (article ID).
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Rubiyatno, Matsui, T., Mori, K., Toyama, T. 2021 Paramylon production by Euglena gracilis via mixotrophic cultivation using sewage effluent and waste organic compounds. Bioresour. Technol. Reports, 15, 100735 (article ID).
Strain(s): 48 
DOI: 10.1016/j.biteb.2021.100735
Rubiyatno, R., Mori, K., Inoue, D., Kim, S., Yu, J., Lee, T., Ike, M., Toyama, T. 2021 Isolation and characterization of Euglena gracilis-associated bacteria, Enterobacter sp. CA3 and Emticicia sp. CN5, capable of promoting the growth and paramylon production of E. gracilis under mixotrophic cultivation. Microorganisms, 9, 1496 (article ID).
Keywords: Euglena gracilis; paramylon; associated bacteria; growth promotion; paramylon production promotion; co-culture; Emticicia sp.; Enterobacter sp.
Strain(s): 48 
PubMed: 34361931
DOI: 10.3390/microorganisms9071496
Rueter, J. G., Ohki, K., Fujita,Y. 1990 The effect of iron nutrition on photosynthesis and nitrogen fixation in cultures of Trichodesmium (cyanophyceae). J. Phycol., 26, 30-35.
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Russell, S., Jackson, C., Reyes-Prieto, A. 2021 High sequence divergence but limited architectural rearrangements in organelle genomes of Cyanophora (Glaucophyta) species. J. Eukaryot. Microbiol., 68, e12831 (article ID).
Keywords: Archaeplastida; genomic distance; glauco-phytes; mitochondria; organelle genomics; plastid; substitution rates
Strain(s): 763764 
PubMed: 33142007
DOI: 10.1111/jeu.12831
Sadakane, H. & Hatano, S. 1982 Isoenzymes of glucose 6-phosphate dehydrogenase in relation to frost hardiness of Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, pp. 157-167.
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Sadakane, H., Ishibashi, K., Yosimoto, M., Hatano, S. 1981 Effects of low temperature, light and O2 on chilling-sensitive and -resistant strains in Chlorella ellipsoidea. Plant Cell Physiol., 22, 657-666.
Keywords: chilling injury; Chlorella ellipsoidea; O2 evolution; O2 uptake
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DOI: 10.1093/oxfordjournals.pcp.a076209
Sadakane, H., Kabata, K., Ishibashi, K., Watanabe, T., Hatano, S. 1980 Studies on frost hardiness in Chlorella ellipsoidea. V. The role of glucose and related compounds. Environ. Exp. Bot., 20, 297-305.
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Sadakane, H., Kawanami, T., Imamura, H., Fukumoto, K., Kawai, Y., Hatano, S. 1978 Studies on synchronous culture in three strains of Chlorella ellipsoidea with different susceptibilities to low temperature. Sci. Bull. Fac. Agr., Kyushu Univ., 32, 161-168 (in Japanese).
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Saijo, H., Tsuruta, K., Kusumoto, N., Ashitani, T., Takahashi, K. 2013 Growth inhibition activities of Sugi bark components against Heterosigma akashiwo. J. Wood Sci., 59, 238-242.
Keywords: Sugi bark; Extract; Inhibition activity; Red tide plankton; Heterosigma akashiwo
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Saito, K., Matsumoto, M., Sekine, T., Murakoshi, I. 1989 Inhibitory substances from Myriophyllum brasiliense of growth of blue-green algae. J. Nat. Prod., 52, 1221-1226.
Strain(s): 4473 
DOI: 10.1021/np50066a004
Saito, M., Watanabe, H., Sasaki, M., Ookubo, M., Yarita, T., Shiraiwa, M., Asayama, M. 2023 Coproduction of lipids and carotenoids by the novel green alga Coelastrella sp. depending on cultivation conditions. Biotech. Rep., 37, e00769 (article ID).
Keywords: biorefinery; carotenoid; Coelastrella; dual production; lipid
Strain(s): 144 
PubMed: 36660172
DOI: 10.1016/j.btre.2022.e00769
Saito, T., Ichihara, T., Inoue, H., Uematsu, T., Hamada, S., Watanabe, T., Takimura, Y., Webb, J. 2020 Comparison of areal productivity of Nannochloropsis oceanica between lab-scale and industrial-scale raceway pond. Mar. Biotechnol., 22, 836–841.
Keywords: Microalgae production; Nannochloropsis; Open raceway pond; Sequential batch culture
Strain(s): 2145 
PubMed: 32860094
DOI: 10.1007/s10126-020-09990-3
Sakaguchi, M., Hausmann, K., Suzaki, T. 1998 Food capture and adhesion by the heliozoon Actinophrys sol. Protoplasma, 203, 130-137.
Keywords: Actinophrys sol; Exocytosis; Extrusomes; Feeding behavior; Heliozoa; Prey adhesion
Strain(s): 2497 
DOI: 10.1007/BF01279469
Sakaguchi, M., Murakami, H., Suzaki, T. 2001 Involvement of a 40-kDa glycoprotein in food recognition, prey capture, and induction of phagocytosis in the protozoon Actinophrys sol. Protist, 152, 33-41.
Strain(s): 24973374 
PubMed: 11401035
DOI: 10.1078/1434-4610-00041
Sakaguchi, M., Suzaki, T., Shigenaka, Y. 1997 Statistical analysis of spatial patterns of the heliozoan Actinophrys sol. Protoplasma, 196, 117-122.
Keywords: Heliozoa; Spatial point pattern; Cell distribution; Interaction potential; Likelihood analysis
Strain(s): 2497 
DOI: 10.1007/BF01281065
Sakaguchi, M., Suzuki, T. 1999 Monoxenic culture of the heliozoon Actinophrys sol. Eur. J. Protistol., 35, 1-10.
Keywords: Actinophrys sol; Antibiotic; Heliozoa; Monoxenic Culture
Strain(s): 24973374 
DOI: 10.1016/S0932-4739(99)80050-9
Sakaguchi, M., Suzuki, T., Khan, S. M. M. K. Hausmann, K. 2002 Food capture by kinetocysts in the heliozoon Raphidiophrys contractilis. Eur. J. Protistol., 37, 453-458.
Keywords: Exocytosis; Extrusome; Heliozoa; Kinetocyst
Strain(s): 24983374 
DOI: 10.1078/0932-4739-00847
Sakaguchi, T., Horikoshi, T., Nakajima, A. 1978 Uptake of uranium from seawater by microalgae. J. Ferm. Technol., 56, 561-565.
Strain(s): 21382139221222382279 
Sakaguchi, T., Tsuji, T., Nakajima, A., Horikoshi, T. 1979 Accumulation of cadmium by green microalgae. Eur. J. Appl. Microbiol. Biotechnol., 8, 207-215.
Strain(s): 2212227322742279 
DOI: 10.1007/BF00506184
Sakai, H., Katayama, H., Oguma, K., Ohgaki, S. 2011 Effect of photoreactivation on ultraviolet inactivation of Microcystis aeruginos. Water Sci. Technol., 63, 1224-1229.
Keywords: Microcystis aeruginosa; photoreactivation; UV treatment
Strain(s): 98 
PubMed: 21436560
DOI: 10.2166/wst.2011.362
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Growth inhibition of Anabaena variabilis by low- or medium-pressure UV lamp irradiation. Environ. Eng. Res., 42, 495-501 (in Japanese with English summary).
Keywords: growth inhibition; Anabaena variabilis; UV irradiation; model calculation
Strain(s): 23 
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Low- or medium-pressure UV lamp inactivation of Microcystis aeruginosa. J. Water Environ. Technol., 3, 55-61.
Keywords: Microcystis aeruginosa; low-pressure (LP) UV lamp; medium-pressure (MP) UV lamp; endonuclease sensitive site (ESS) assay; photoreactivation
Strain(s): 98 
Sakai, H., Oguma, K., Katayama, H., Ohgaki, S. 2007 Effects of low- or medium-pressure ultraviolet lamp irradiation on Microcystis aeruginosa and Anabaena variabilis. Water Res., 41, 11-18.
Keywords: Microcystis aeruginosa; Anabaena variabilis; Low-pressure ultraviolet lamp; Medium-pressure ultraviolet lamp; DNA damage; Photosynthetic activity
Strain(s): 2398 
PubMed: 17097715
DOI: 10.1016/j.watres.2006.09.025
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017 Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan. Fish. Sci., 83, 113-121.
Keywords: Algicidal bacteria; Real-time polymerase; chain reaction; Zostera marina; Harmful algal bloom; Most probable number
Strain(s): 1 
DOI: 10.1007/s12562-016-1048-y
Sakamori, S., Uraya, K., Annen, K. 2001 Eutrophication of the sea area (III). Bull. Toyama Pref. Environ. Sci. Res. Center, 29, 34-42 (in Japanese with English summary).
Strain(s): 561 
Sakamori, S., Yoshikawa, H., Annen, K. 2000 The research on the eutrophication of the sea area (II). Bull. Toyama Pref. Environ. Sci. Res. Center, 28, 31-41 (in Japanese with English summary).
Strain(s): 561 
Sakamoto, B., Hokama, Y., Horgen, FD., Scheuer, PJ., Kan, Y., Nagai, H. 2000 Isolation of a sulfoquinovosyl monoacylglycerol from Bryopsis sp. (Chlorophyta): identification of a factor causing a possible species-specific ecdysis response in Gambierdiscus toxicus (Dinophyceae). J. Phycol., 36, 924-931.
Keywords: Bryopsis sp.; Ecdysis; Gambierdiscus toxicus; 1-O-palmitoyl-3-O-(6'-sulfo-a-d-quinovopyrano-syl)-sn-glycerol; Sulfoquinovosyl monoacylglycerols
Strain(s): 615617 
DOI: 10.1046/j.1529-8817.2000.00006.x
Sakamoto, S., Yamaguchi, M., Watanabe, M. F., Watanabe, M., Kamiya, H. 1996 Distribution and characterization of lectins from natural and cultured Microcystis spp. In Harmful and Toxic Algal Blooms, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., Intergovernmental Oceanographic Commission of UNESCO 1996, pp. 569-572.
Strain(s): 1001021062981057106110661080 
Sakamoto, T., Hashimoto, A., Yamaba, M., Wada, N., Yoshida, T., Inoue-Sakamoto, K., Nishiuchi, T., Matsugo, S. 2019 Four chemotypes of the terrestrial cyanobacterium Nostoc commune characterized by differences in the mycosporine‐like amino acids. Phycol. Res., 67, 3-11.
Strain(s): 253839893990 
DOI: 10.1111/pre.12333
Sakamoto, T., Kumihashi, K., Kunita, S., Masaura, T., Inoue-Sakamoto, K., Yamaguchi, M. 2011 The extracellular-matrix-retaining cyanobacterium Nostoc verrucosum accumulates trehalose, but is sensitive to desiccation. FEMS Microbiol. Ecol., 77, 385-394.
Keywords: compatible solute; stress tolerance; extracellular; polysaccharide; water stress protein (WspA)
Strain(s): 25382539 
DOI: 10.1111/j.1574-6941.2011.01114.x
Sakamoto, T., Murata, N., Ohmori, M. 1991 The concentration of cyclic AMP and adenylate cyclase activity in cyanobacteria. Plant Cell Physiol., 32, 581-584.
Keywords: adenylate cyclase; cyanobacterium; cyclic AMP; cyclic nucleotide phosphodiesterase
Strain(s): 19 
DOI: 10.1093/oxfordjournals.pcp.a078119
Sakata, T., Yoshikawa, T., Nishitarumizu, S. 2010 Purification of an algicidal substance produced by marine Pseudomonas sp. C55a-2. Mem, Fac. Fish. Kagoshima Univ., 59, 17-25.
Keywords: algicidal substance; Chaetoceros; Chattonella; Heterosigma; Pseudomona
Strain(s): 6121 
Sakayama, H. 2008 Taxonomy of Nitella (Charales, Charophyceae) based on comparative morphology of oospores and multiple DNA marker phylogeny using cultured material. Phycol. Res., 56, 202-215.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 161116281634170417051706 
DOI: 10.1111/j.1440-1835.2008.00502.x
Sakayama, H., Arai, S., Nozaki. H., Kasai, F., Watanabe, M. M. 2006 Morphology, molecular phylogeny and taxonomy of Nitella comptonii (Charales, Characeae). Phycologia, 45, 417-421.
Keywords: atpB gene; Charales; Charophyceae; internal transcribed spacer region; Japanese taxa; morphology; Nitella comptonii; oospores; psaB gene; rbcL gene; scanning electron microscopy; taxonomy
Strain(s): 170417051706 
DOI: 10.2216/05-31.1
Sakayama, H., Hara Y., Nozaki, H. 2004 Taxonomic re-examination of six species of Nitella (Charales, Charophyceae) from Asia, and phylogenetic relationships within the genus based on rbcL and atpB gene sequences. Phycologia, 43, 91-104.
Strain(s): 1634 
DOI: 10.2216/i0031-8884-43-1-91.1
Sakayama, H., Hara, Y., Arai, S., Sato, H., Nozaki, H. 2004 Phylogenetic analyses of Nitella subgenus Tieffallenia (Charales, Charophyceae) using nuclear ribosomal DNA internal transcribed spacer sequences. Phycologia, 43, 672-681.
Strain(s): 1628 
DOI: 10.2216/i0031-8884-43-6-672.1
Sakayama, H., Miyaji, K., Nagumo, T., Kato, M., Hara Y., Nozaki, H. 2005 Taxonomic re-examination of 17 species of Nitella subgenus Tieffallenia (Charales, Charophyceae) based on internal morphology of the oospore wall and multiple DNA marker sequences. J. Phycol., 41, 195-211.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 1628 
DOI: 10.1111/j.1529-8817.2005.04133.x
Sakio, Y., Ishibashi, M., Okuyama, E. 2000 Chemical constituents of a diatom Triceratium dubium. Nat. Med., 54, 104.
Keywords: Triceratium dubium; diatom; microalgae; epiloliolide; phaeophorbide
Strain(s): 556 
Sako, Y., Adachi, M., Ishida, Y. 1995 Specific monoclonal antibodies and DNA probes for the identification of the toxic dinoflagellate genus Alexandrium. In Harmful Marine Algal Blooms, Eds. by Lassus, P., et al., Lavoisier, Intercept Ltd., pp. 77-82.
Strain(s): 5118 
Sako, Y., Hosoi-Tanabe, S., Uchida, A. 2004 Fluorescence in situ hybridization using rRNA-targeted probes for simple and rapid identification of the toxic dinoflagelates Alexandrium tamarense and Alexandrium catenella. J. Phycol., 40, 598-605.
Keywords: Alexandrium; FISH method; LSU rRNA; molecular identification; paralytic shellfish poisoning (PSP); probe; toxic dinoflagellate
Strain(s): 1712331 
DOI: 10.1111/j.1529-8817.2004.03035.x
Sakomoto, T., Takabe,Y., Uemura, T., Masuda, T., Hoshikawa, Y. 2020 Feed utilisation of Chlorella vulgaris cultivated with aquaculture effluent. J. Water Environ. Technol., 18, 17-26.
Keywords: Chlorella vulgaris; aquaculture effluent; nutrient consumption; feed utilisation; amino acids
Strain(s): 2170 
DOI: 10.2965/jwet.19-069
Sakurai, K., Mori, N., Sato, N. 2014 Detection and characterization of phosphatidylcholine in various strains of the genus Chlamydomonas (Volvocales, Chlorophyceae). J. Plant Res., 127, 641-650.
Keywords: Chlamydomonas; Delta 5 desaturase; Diacylglyceryl-N,N,N-trimethylhomoserine; Fatty acid; Phosphatidylcholine
Strain(s): 22022207221222152219222522302242231624622499 
PubMed: 24947506
DOI: 10.1007/s10265-014-0644-0
Saldarriaga, J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R., Keeling, P. J. 2003 Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Microbiol., 53, 355-365.
Strain(s): 304 
PubMed: 12656195
DOI: 10.1099/ijs.0.02328-0
Saldarriaga, J. F., Taylor, F. J. R., Cavalier-Smith, T., Menden-Deuer, S., Keeling, P. J. 2004 Molecular data and the evolutionary history of dinoflagellates. Eur. J. Protistol., 40, 85-111.
Keywords: Dinoflagellates; Ribosomal RNA; Chloroplast evolution; Molecular phylogeny; Theca; Photosynthesis
Strain(s): 471 
DOI: 10.1016/j.ejop.2003.11.003
Saldarriaga, J. F., Taylor, F. J. R., Keeling, P. J., Cavalier-Smith, T. 2001 Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J. Mol. Evol., 53, 204-213.
Keywords: Plastid; Dinoflagellates; Small subunit rRNA; Phylogeny; Endosymbiosis
Strain(s): 304463 
PubMed: 11523007
DOI: 10.1007/s002390010210
Sandrini, G., Huisman, J., Matthijs, HC. 2015 Potassium sensitivity differs among strains of the harmful cyanobacterium Microcystis and correlates with the presence of salt tolerance genes. FEMS Mircobiol. Lett., 362 fnx121 (article ID).
Keywords: compatible solutes; cyanobacteria; harmful algal blooms; lake mitigation; microcystins; salt stress
Strain(s): 843 
PubMed: 26208527
DOI: 10.1093/femsle/fnv121
Sano, D., Ishifuji, S., Sato, Y., Imae, Y., Takaara, T., Masago, Y., Omura, T. 2011 Identification and characterization of coagulation inhibitor proteins derived from cyanobacterium Microcystis aeruginosa. Chemosphere, 82, 1096-1102.
Keywords: Aluminum-immobilized affinity; chromatography; Coagulation inhibition; Cyanobacterial protein; Microcystis aeruginosa; Phage display; Polyaluminum chloride
Strain(s): 91 
PubMed: 21211815
DOI: 10.1016/j.chemosphere.2010.12.005
Sano, T. & Kaya, K. 1995a Oscillamide Y, a chymotrypsin inhibitor from toxic Oscillatoria agardhii. Tetrahedron Letters, 36, 5933-5936.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01198-Q
Sano, T. & Kaya, K. 1995b A 2-amino-2-butenoic acid (Dhb)-containing microcystin isolated from Oscillatoria agardhii. Tetrahedron Letters, 36, 8603-8606.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01824-2
Sano, T. & Kaya, K. 1996 Oscillapeptin G, a tyrosinase inhibitor from toxic Oscillatoria agardhii. J. Nat. Prod., 59, 90-92.
Strain(s): 610 
Sano, T., Takagi, H., Kaya, K. 2004 A Dhb-microcystin from the filamentous cyanobacterium Planktothrix rubescens. Phytochemistry, 65, 2159-2162.
Keywords: Planktothrix rubescens; cyanobacterium; microcystin; Dhb-microcystin; hepatotoxin; cyanotoxin
Strain(s): 928 
DOI: 10.1016/j.phytochem.2004.03.034
Sano, T., Takagi, H., Nagano, K., Nishikawa, M., Kaya, K. 2011 Accurate LC-MS analyses for microcystions using per-15N-labeled microcystins. Anal. Bioanal. Chem., 399, 2511-2516.
Keywords: Microcystin; Stable isotope; Surrogate; Liquid chromatography-mass spectrometry; Accurate analysis
Strain(s): 107 
PubMed: 21221535
DOI: 10.1007/s00216-010-4639-y
Sano, T., Usui, T., Ueda, K., Osada, H., Kaya, K. 2001 Isolation of new protein phosphatase inhibitors from two cyanobacteria species, Planktothrix spp. J. Nat. Prod., 64, 1052-1055.
Strain(s): 905928 
PubMed: 11520225
DOI: 10.1021/np0005356
Santaeufemia, S., Abalde, J., Torres, E. 2019 Eco-friendly rapid removal of triclosan from seawater using biomass of a microalgal species: Kinetic and equilibrium studies. J. Hazard. Mater., 369, 674-683.
Keywords: Sorption; Phaeodactylum tricornutum; Removal; Kinetic
Strain(s): 4392 
PubMed: 30826560
DOI: 10.1016/j.jhazmat.2019.02.083
Sarai, C., Tanifuji, G., Nakayama, T., Kamikawa, R., Takahashi, K., Yazaki, E., Matsuo, E., Miyashita, H., Ishida, K-I., Iwataki, M., Inagaki, Y. 2020 Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc. Nati. Acad. Sci. U. S. A., 117, 5364-5375.
Keywords: secondary endosymbiosis; nucleomorph; endosymbiotic gene transfer; plastid; Pedinophyceae
Strain(s): 1868 
PubMed: 32094181
DOI: 10.1073/pnas.1911884117
Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L. 2023 Contributions on Lindane Degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID).
Keywords: Microcystis; lindane; linC; pesticides; bioremediation
Strain(s): 843 
DOI: 10.3390/w14081219
Sarasa-Buisán, C., Guío, J., Castro, C., Bes, M. T., Fillat, M. F., Peleato, M. L., Sevilla, E. 2022 Contributions on lindane degradation by Microcystis aeruginosa PCC 7806. Water, 14, 1219 (article ID).
Keywords: Microcystis; lindane; linC; pesticides; bioremediation
Strain(s): 843 
DOI: 10.3390/w14081219
Sardool, G., Daud, M. A., Hamatani, Y., Megat, M. J., Noor, M., Ustumi, M., Goto, M., Sugiura, N., Ujang, Z. 2021 Suppression of Aphanizomenon flos-aquae by solid polymer electrode (SPE) membrane electrolysis with aerated systems. PERINTIS eJournal, 11, 1-22.
Keywords: advance oxidation; aeration; cyanobacteria; degradation; electrolysis
Strain(s): 1258 
Sargent, D. F. & Taylor, C. P. S. 1972 Light-induced inhibition of respiration in DCMU-poisoned Chlorella caused by phytosystem I activity. Can. J. Bot., 50, 13-21.
Strain(s): 2151 
DOI: 10.1139/b72-003
Sartoni, G. & Sonni, C. 1991 Tribonema marinum J. Feldmann and Acinetospora crinita (Carmichael) Sauvageau in the benthic mucilaginous aggregates observed along Tuscan shores during the summer of 1991. Informatore Botanico Italiano, 23, 23-30 (in Italian with English summary).
Strain(s): 548 
Saruwatari, K., Satoh, M., Harada, N., Suzuki, I., Shiraiwa, Y. 2016 Change in coccolith morphology by responding to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi Seas. Biogeosciences, 13, 2743-2755.
Strain(s): 131133623366 
DOI: 10.5194/bg-13-2743-2016
Sasa, T. 1957 Effect of photphorescent particles suspended in the medium upon the efficiency of light-energy utilization by Chlorella cells. J. Gen. Appl. Microbiol., 3, 121-124.
Strain(s): 2170 
DOI: 10.2323/jgam.3.121
Sasa, T., Kunieda, R., Tamiya, H. 1960 Growing Daphnia (water-fleas) with Chlorella. J. Gen. Appl. Microbiol., 6, 252-255.
Strain(s): 2170 
Sasa, T., Suda, S., Watanabe, M. M., Takaichi, S. 1992 A yellow marine Chlamydomonas: morphology and pigment composition. Plant Cell Physiol., 33, 527-534.
Keywords: carotenoid; Chlamydomonas; Chlamydomonas parkeae; Chlorophyta; ultrastructure; 2,4-divinylprotochlorophyllide (DVP); flagellar apparatus; siphonaxanthin; siphonaxanthin decenoate; siphonaxanthin dodecenoate; siphonaxanthin octenoate
Strain(s): 440 
DOI: 10.1093/oxfordjournals.pcp.a078286
Sasa, T., Takaichi, S. Hatakeyama, N., Watanabe, M. M. 1992 A novel carotenoid ester, loroxanthin dodecenoate, from Pyramimonas parkeae (Prasinophyceae) and a chlorarachniophycean alga. Plant Cell Physiol., 33, 921-925.
Keywords: (3R,3'R,6'R)-β,ε-carotene-3,19,3'-triol 19-(2-dodecanoate); chlorarachniophyte; 1H-NMR; loroxanthin dodecenoate; Pyramimonas parkeae
Strain(s): 254 
DOI: 10.1093/oxfordjournals.pcp.a078342
Sasaki, G., Katoh, K., Hirose, N., Suga, H., Kuma, K., Miyata, T., Su, Z. H. 2007 Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes. Gene, 401(1-2), 135-144.
Keywords: conjugate alga; stonewort; gene family; divergence; phylogenetic tree; molecular evolution
Strain(s): 228 
DOI: 10.1016/j.gene.2007.07.009
Sasaki, K., Marquez, F. J., Nishio, N., Nagai, S. 1995 Promotive effect of 5-aminolevulinic acid on the growth and photosynthesis of Spirulina platensis. J. Ferment. Bioeng., 79, 453-457.
Keywords: 5-aminolevulinic acid; Spirulina platensis; phycocyanin; chlorophyll
Strain(s): 39 
DOI: 10.1016/0922-338X(95)91261-3
Satjarak, A. & Graham, L. E. 2017 Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes. J. Phycol., 53, 415-424.
Keywords: chloroplast DNA variation; chloroplast genome; intraspecific variation; prasinophyte; Pyramimonas parkeae
Strain(s): 254 
PubMed: 28130930
DOI: 10.1111/jpy.12515
Sato, M., Mogi, Y., Nishikawa, T., Miyamura, S., Nagumo, T., Kawano, S. 2009 The dynamic surface of dividing cyanelles and ultrastructure of the region directly below the surface in Cyanophora paradoxa. Planta, 229, 781-791.
Keywords: Chloroplast division; Cyanelle; Field emission (FE)-SEM; Glaucocystophyta; Peptidoglycan; FtsZ
Strain(s): 547 
PubMed: 19096871
DOI: 10.1007/s00425-008-0872-4
Sato, M., Murata, Y., Mizusawa, M., Iwahashi, H., Oka, S.-I. 2004 A simple and rapid dual-fluorescence viability assay for microalgae. Microbiol. Cult. Coll., 20, 53-59.
Keywords: microalgae; SYTOX Green; viability assay; autofluorescence
Strain(s): 32204 
Sato, M., Nishikawa, T., Yamazaki, T., Kawano, S. 2005 Isolation of the plastid FtsZ gene from Cyanophora paradoxa (Glaucocystophyceae, Glaucocystophyta). Phycol. Res., 53, 93-96.
Keywords: cyanelle; Cyanophora paradoxa; FtsZ; Glaucocystophyta; plastid division
Strain(s): 547 
DOI: 10.1111/j.1440-183.2005.00376.x
Sato, N. 1988 Dual role of methionine in the biosynthesis of diacylglyceryltrimethylhomoserine in Chlamydomonas reinhardtii. Plant Physiol., 86, 931-934.
Strain(s): 3284 
PubMed: 16666011
DOI: 10.1104/pp.86.3.931
Sato, N. 1989 Modulation of lipid and fatty acid content by carbon dioxide in Chlamydomonas reinhardtii. Plant Sci., 61, 17-21.
Keywords: carbon dioxide; Chlamydomonas; fatty acid; lipid
Strain(s): 3284 
DOI: 10.1016/0168-9452(89)90113-1
Sato, N. & Murata, N. 1980 Temperature shift-induced responses in lipids in the blue-green alga, Anabaena variabilis. The central role of diacylmonogalactosylglycerol in thermo-adaptation. Biochim. Biophys. Acta, 619, 353-366.
Strain(s): 2093 
PubMed: 6773583
DOI: 10.1016/0005-2760(80)90083-1
Sato, N. & Murata, N. 1981 Studies on the temperature shift-induced desaturation of fatty acids in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 22, 1043-1050.
Keywords: Anabaena variabilis; cyanobacterium; fatty acid desaturation; monogalactosyl diacylglycerol; temperature shift
Strain(s): 2093 
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga (cyanobacterium), Anabaena variabilis. III. UDPglucose: diacylglycerol glucosyltransferase in vitro. Plant Cell Physiol., 23, 1115-1120.
Keywords: Anabaena variabilis; blue-green alga; glucosyltransterase; glyceroglycolipids; monoglucosyl diacylglycerol
Strain(s): 2093 
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. I. Lipid class. Biochim. Biophys. Acta, 710, 271-278.
Strain(s): 2093 
DOI: 10.1016/0005-2760(82)90109-6
Sato, N. & Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. II. Fatty acids and lipid molecular species. Biochim. Biophys. Acta, 710, 279-289.
Strain(s): 2093 
Sato, N., Katsumata, Y., Sato, K., Tajima, N. 2014 Cellular dynamics drives the emergence of supracellular structure in the Cyanobacterium, Phormidium sp. KS. Life-Basel, 4, 819-836.
Keywords: cyanobacteria; Phormidium; supracellular structure; biofilm; spiral formation; emergence of order; slime gun model
Strain(s): 4263 
PubMed: 25460162
DOI: 10.3390/life4040819
Sato, N., Mori, N., Hirashima, T., Moriyama, T. 2016 Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis. Plant J., 87, 281–292.
Keywords: Chlamydomonas; Cyanidioschyzon merolae; phosphatidylcholine biosynthesis; phosphatidylethanolamine methyltransferase; phosphoethanolamine methyltransferase
Strain(s): 22072242 
PubMed: 27133435
DOI: 10.1111/tpj.13199
Sato, N., Moriyama, T. 2007 Genomic and biochemical analysis of lipid biosynthesis in the unicellular Rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. Eukaryot. Cell, 6, 1006-1017.
Strain(s): 3377 
PubMed: 17416897
DOI: 10.1128/EC.00393-06
Sato, N., Murata, N., Miura, Y., Ueta, N. 1979 Effect of growth temperature on lipid and fatty acid compositions the blue-green algae, Anabaena variabilis and Anacystis nidulans. Biochim. Biophys. Acta, 572, 19-28.
Strain(s): 20933277 
PubMed: 104734
DOI: 10.1016/0005-2760(79)90196-6
Sato, N., Seyama, Y., Murata, N. 1986 Lipid-linked desaturation of palmitic acid in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis studied in vivo. Plant Cell Physiol., 27, 819-835.
Keywords: Anabaena variabilis; blue-green alga (cyanobacterium); lipid-linked desaturation; mass spectroscopy; monogalactosyl diacylglycerol; palmitoleic acid biosynthesis
Strain(s): 2093 
DOI: 10.1093/oxfordjournals.pcp.a077168
Sato, N., Yoshitomi, T., Mori-Moriyama, N. 2020 Characterization and biosynthesis of lipids in Paulinella micropora MYN1. Evidence for efficient integration of chromatophores into cellular lipid metabolism. Plant Cell Physiol., 61, 869–881.
Keywords: Paulinella micropora; Betaine lipid; chromatophore; endosymbiosis; lipid metabolism; metabolic flow
Strain(s): 4060 
PubMed: 32044983
DOI: 10.1093/pcp/pcaa011
Sato, R., Fujishima, H., Itabashi, Y. 2003 Analysis of algal phosphatidylglycerols by chiral phase high-performane liquid chromatography. Bull. Fish. Sci. Hokkaido Univ., 54, 7-12 (in Japanese with English summary).
Keywords: phosphatidylglycerol; diastereomer; Enteromorpha sp.; Chlorella vulgaris; Heterosigma akashiwo; spinach; parsley; green tea; chiral phase HPLC; 3,5-dinitrophenylurethane
Strain(s): 227 
Sato, S., Nishimura, T., Uehara, K., Sakanari, H., Tawong, W., Hariganeya, N., Smith, K., Rhodes, L., Yasumoto, T., Taira, Y., Suda, S., Yamaguchi, H., Adachi, M. 2011 Phylogeography of Ostreopsis along West Pacific coast, with special reference to a novel clade from Japan. PLoS One, 6, e27983 (article ID).
Strain(s): 3351 
PubMed: 22164222
DOI: 10.1371/journal.pone.0027983
Sato, T. & Hori, K. 2009 Cloning, expression, and characterization of a novel anti-HIV lectin from the cultured cyanobacterium, Oscillatoria agardhii. Fish. Sci., 75, 743-753.
Keywords: anti-HIV; high-mannose N-glycans; Oscillatoria agardhii; lectin; recombinant lectin
Strain(s): 204 
DOI: 10.1007/s12562-009-0074-4
Sato, Y., Ito, A., Tate, N., Sasaki, A., Aizawa, J., Umita, T. 2008 Impact of coexistent metal on survival of diatom in presence of polynuclear hydroxy-alminium ion. Environ. Eng. Res., 45, 139-145.
Keywords: polynuclear hydroxyl-Aluminium ion; diatom; complex ecological impact of coexistent metal cations
Strain(s): 487 
Sato, Y., Murakami, M., Miyazawa, K., Hori, K. 2000 Purification and characterization of a novel lectin from a freshwater cyanobacterium, Oscillatoria agardhii. Comp. Biochem. Physiol., Part B 125, 169-177.
Keywords: agglutinins; blue-green algae; cyanobacteria; carbohydrate-binding specificity; isolation; lectin; eucheuma; Myxococcus xanthus; Oscillatoria agardhii; N-terminal sequence
Strain(s): 204 
PubMed: 10817903
DOI: 10.1016/S0305-0491(99)00164-9
Sato, Y., Okuyama, S., Hori, K. 2007 Primary structure and carbohydrate binding specificity of a potent anti-HIV lectin isolated from the filamentous cyanobacterium Oscillatoria agardhii. J. Biol. Chem., 282, 11021-11029.
Strain(s): 204 
PubMed: 17314091
DOI: 10.1074/jbc.M701252200
Satoh, E., Satoh, S., Fujii, T. 1992 Synchronization of phosphorylation of a chloroplast protein with the cell division cycle in Heterosigma akashiwo. Plant Cell Physiol., 33, 275-280.
Keywords: cell cycle; chloroplast stromal protein; Heterosigma akashiwo; protein phosphorylation
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a078251
Satoh, H. & Takeda, H. 1989 Detection and first characterization of a cell-wall lytic activity in Chlorella ellipsoidea C-27. Physiol. Plant., 77, 20-26.
Keywords: autolysis; cell wall; Chlorella; lytic activity
Strain(s): 2170 
DOI: 10.1111/j.1399-3054.1989.tb05972.x
Satoh, M., Iwamoto, K., Suzuki, I., Shiraiwa, Y. 2009 Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions. Mar. Biotechnol., 11, 327-333.
Keywords: calcification; coccolith production; coccolithophore; cold stress; Emiliania huxleyi; phosphate deprivation
Strain(s): 837 
PubMed: 18830665
DOI: 10.1007/s10126-008-9147-0
Sausen, N., Malavasi, V., Melkonian, M. 2018 Molecular phylogeny, systematics and revision of the type species of Lobomonas, L. francei,(Volvocales, Chlorophyta) and closely related taxa. J. Phycol., 54, 198-214.
Keywords: crystalline glycoprotein lattice; CWClade; ITS2; L. panduriformis; rbcL; Reinhardtinia; scanning electron microscopy; SSU nrRNA
Strain(s): 25741845647454156657766673587988088288313621708185825673923 
PubMed: 29278416
DOI: 10.1111/jpy.12615
Sawada, K. & Shiraiwa, Y. 2004 Alkenone and alkenoic acid compositions of the membrane fractions of Emiliania huxleyi. Phytochemistry, 65, 1299-1307.
Keywords: coccolithophorid; Emiliania huxleyi; Haptophyceae; alkenones; alkenoic acids; lipid biomarker; membrane fractionation; intracellular localization; unsaturation index
Strain(s): 837 
DOI: 10.1016/j.phytochem.2004.03.015
Sawada, K., Handa, N., Shiraiwa, Y., Danbara, A., Montani, S. 1996 Long-chain alkenones and alkyl alkenoates in the coastal and pelagic sediments of the northwest North Pacific, with special reference to reconstruction of Emiliania huxleyi and Gephyrocapsa oceanica ratios. Org. Geochem., 24, 751-764.
Keywords: alkenone, alkyl alkenoate; Uk'37; EE/K37; EE/K38; Emiliania huxleyi; Gephyrocapsa oceanica; coccolithophorid assemblage; northwest North Pacific sediment
Strain(s): 837838 
DOI: 10.1016/S0146-6380(96)00087-3
Scanlan, D. J., Hess, W. R., Partensky, F., Newman, J., Vaulot, D. 1996 High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. Eur. J. Phycol., 31, 1-9.
Strain(s): 288028812882 
DOI: 10.1080/09670269600651131
Scheibe, J. 1972 Photoreversible pigment: occurrence in a blue-green alga. Science, 176, 1037-1039.
Strain(s): 37 
PubMed: 17778430
DOI: 10.1126/science.176.4038.1037
Schlüter, L., David, G. S., Jørgensen, N. O. G., Podduturi, R., Tucci, A., Dias, A. S., da Silva, R. J. 2018 Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production. Aquac. Environ. Interact., 10, 35-48.
Keywords: Microcystins; Pigment analysis; Cyanobacteria; Phytoplankton composition; HPLC; Fish farm
Strain(s): 107 
DOI: 10.3354/aei00256
Schmermund, L., Bierbaumer, S., Schein, V. K., Winkler, C. K., Kara, S., Kroutil, W. 2020 Extending the library of light-dependent protochlorophyllide oxidoreductases and their solvent tolerance, stability in light and cofactor lexibility. ChemCatChem, 12, 4044-4051.
Strain(s): 3755 
DOI: 10.1002/cctc.202000561
Schoevaert, D., Krishnamswamy, S., Couturier, M., Marano, F. 1988 Ciliary beat and cell motility of Dunaliella: computer analysis of high speed microcinematography. Biol. Cell, 62, 229-240.
Strain(s): 2253 
DOI: 10.1111/j.1768-322X.1988.tb00725.x
Schönknecht, G., Chen, W.-H., Ternes, C. M., Barbier, G. G., Shrestha, R. P., Stanke, M., Bräutigam, A., Baker, B. J., Banfield, J. F., Garavito, R. M., Carr, K., Wilkerson, C., Rensing, S. A., Gagneul, D., Dickenson, N. E., Oesterhelt, C., Lercher, M. J., Weber, A. P. M. 2013 Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science, , 1207-1210.
Strain(s): 3638 
PubMed: 23471408
DOI: 10.1126/science.1231707
Schulze, D., Robenek, H., McFadden, G. I., Melkonian, M. 1987 Immunolocalization of a Ca2+-modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector. Eur. J. Cell Biol., 45, 51-61.
Strain(s): 2253 
Schwarze, P., Frandsen, N. O. 1960 Herstellung von Chlorella-Farbmutanten mit Hilfe von radioaktiven Isotopen. Naturwissenschaften, 47, 47.
Strain(s): 21612162 
Schwender, J., Gemünden, C., Lichtenthaler, H. K. 2001 Chlorophyta exclusively use the 1-deoxyxylulose 5-phosphate/2-C-methylerythritol 4-phosphate pathway for the biosynthesis of isoprenoids. Planta, 212, 416-423.
Keywords: Charophyta; 1-Deoxy-D-xylulose; Green alga; Isopentenyl diphosphate; Isoprenoid biosynthesis; Mevalonate
Strain(s): 296 
PubMed: 11289606
DOI: 10.1007/s004250000409
Scoble, J. M., Cavalier-Smith, T. 2014 Scale evolution, sequence phylogeny, and taxonomy of thaumatomonad Cercozoa: 11 new species and new genera Scutellomonas, Cowlomonas, Thaumatospina and Ovaloplaca. Eur. J. Protistol., 50, 270-313.
Keywords: Imbricatea; Silica scale evolution; Spongomonadida; Thaumatomonadida; Thaumatomastix; Zoelucasida
Strain(s): 2378 
PubMed: 24667165
DOI: 10.1016/j.ejop.2013.12.005
Seger, M., Mammadova, F., Villegas-Valencia, M., de Freitas, B. B., Chang, C. R. S., Isachsen, I., Hemstreet, H., Abualsaud, F., Boring, M., Lammers, P. J., Lauersen, K. J. 2023 Engineered ketocarotenoid biosynthesis in the polyextremophilic red microalga Cyanidioschyzon merolae 10D. Metab. Eng. Commun., 17, e00226 (article ID).
Keywords: Microalgae; red algae; ketocarotenoids; Cyanidiophyceae; polyextremophiles; astaxanthin
Strain(s): 3377 
PubMed: 37449053
DOI: 10.1016/j.mec.2023.e00226
Sekiguchi, M., Ohtsuki, A., Shibata, Y., Morita, M. 1995 Arsenic compounds accumulated in phytoplanktons of marine origin. J. Environ. Chem. [Kankyô-Kagaku], 5, 366-367 (in Japanese with English title).
Strain(s): 16208440 
Sekiguchi, Y., Kobayashi, A., Takayama, Y., Oide, M., Fukuda, A., Yamamoto, Y., Okajima, K., Oroguchi, T., Hirakawa, T., Inui, Y., Matsunaga, S., Yamamoto, M., Nakasako, M. 2018 Coherent X-ray Diffraction Imaging of Cyanidioschyzon merolae. In Cyanidioschyzon merolae: A New Model Eukaryote for Cell and Organelle Biology, Eds. by Kuroiwa, T., Miyagishima, S., Matsunaga, S., Sato, N., Nozaki, H., Tanaka, K., Misumi, O., Springer Singapore, pp. 153-173.
Strain(s): 2087 
DOI: 10.1007/978-981-10-6101-1_10
Sekimoto, H. 2000 Intercellular communication during sexual reproduction of Closterium (Conjugatophyceae). J. Plant Res., 113, 343-352.
Keywords: chemotaxis; Closterium; conjugation; mating; sex pheromone; sexual reproduction
Strain(s): 6465228229 
DOI: 10.1007/PL00013941
Sekimoto, H. 2002 Production and secretion of a biologically active Closterium sex pheromone by Saccharomyces cerevisiae. Plant Physiol. Biochem., 40, 789-794.
Keywords: Closterium; conjugation; pheromone; PR-IP; sexual reproduction
Strain(s): 6768 
DOI: 10.1016/S0981-9428(02)01432-8
Sekimoto, H. 2004 Molecular characterization of a novel sex pheromone, PR-IP inducer, in Closterium peracerosum-strigosum-littorale complex. Jpn. J. Phycol. (Sôrui), 52, Suppl., 117-122.
Keywords: Closterium; conjugation; gamete mating; sex pheromone, sexual reproduction
Strain(s): 6768 
Sekimoto, H. 2017 Sexual reproduction and sex determination in green algae. J. Plant Res., 130, 423-431.
Keywords: Closterium; Chlamydomonas; Sexual reproduction; Sex determination
Strain(s): 6768 
PubMed: 28188480
DOI: 10.1007/s10265-017-0908-6
Sekimoto, H. & Fujii, T. 1991 Sexual reproduction of microalgae : its physiological and biochemical study. Cell Science, 7, 562-571 (in Japanese with English title).
Strain(s): 6768 
Sekimoto, H. & Fujii, T. 1992 Analysis of gametic protoplast release in the Closterium peracerosum-strigosum-littorale complex (Chlorophyta). J. Phycol., 28, 615-619.
Keywords: biologically active glycoprotein; Closterium peracerosum-strigosum-littorale complex; conjugation; gametic protoplast release
Strain(s): 6768 
DOI: 10.1111/j.0022-3646.1992.00615.x
Sekimoto, H. & Fujii, T. 1993 Cell-cell interaction involved in the sexual reproduction of Closterium [Mikadukimo no yûsei seisyoku ni kakawaru saibôkan jôhô kôkan]. Iden, 47 (1), 43-48 (in Japanese).
Strain(s): 64656768 
Sekimoto, H. & Fukumoto, R. 1999 Sex pheromones in Closterium. Chem. Regul. Plant, 34, 305-315.
Strain(s): 64656768 
Sekimoto, H., Fukumoto, R., Dohmae, N., Takio, K. Fujii, T., Kamiya, Y. 1998 Molecular cloning of a novel sex pheromone responsible for the release of a different sex pheromone in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 39, 1169-1175.
Keywords: Clostreium; conjugation; gamete; mating; sex pheromone; sexual reproduction
Strain(s): 6768 
DOI: 10.1093/oxfordjournals.pcp.a029317
Sekimoto, H., Komiya, A., Tsuyuki, N., Kawai, J., Kanda, N., Ootsuki, R., Suzuki, Y., Toyoda, A., Fujiyama, A., Kasahara, M., Abe, J., Tsuchikane, Y., Nishiyama, T. 2023 A divergent RWP-RK transcription factor determines mating type in heterothallic Closterium. New Phytol., 237, 1636-1651.
Keywords: Closterium peracerosum-strigosum-littorale complex; mating type; RWP-RK; sex determination; sexual reproduction; streptophyta; Zygnematophyceae
Strain(s): 6769 
PubMed: 36533897
DOI: 10.1111/nph.18662
Sekimoto, H., Satoh, S., Fujii, T. 1990 Biochemical and physiological properties of a protein inducing protoplast release during conjugation in the Closterium peracerosum-strigosum-littorale complex. Planta, 182, 348-354.
Keywords: Clostreium; conjugation (Closterium); glycoprotein; protoplast release in conjugation
Strain(s): 6768 
DOI: 10.1007/BF02411384
Sekimoto, H., Satoh, S., Fujii, T. 1992 Biochemical and physiological properties of a gametic protoplast-release-inducing protein in Closterium. Korean J. Phycol., 7, 121-129.
Keywords: Clostreium; conjugation; glycoprotein; protoplast release in conjugation
Strain(s): 6768 
Sekimoto, H., Satoh, S., Fujii, T. 1993 Analysis of binding of biotinylated protoplast-release-inducing protein that induces release of gametic protoplasts in the Closterium peracerosum-strigosum-littorale complex. Planta, 189, 468-474.
Keywords: Clostreium; conjugation (Closterium); protoplast-release; inducing protein; pheromone; receptor
Strain(s): 6768 
PubMed: 24178507
DOI: 10.1007/BF00194447
Sekimoto, H., Sone, Y., Fujii, T. 1994 A cDNA encoding a 19-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 105, 447.
Strain(s): 67 
PubMed: 8029362
DOI: 10.1104/pp.105.1.447
Sekimoto, H., Sone, Y., Fujii, T. 1994 cDNA cloning of a 42-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 104, 1095-1096.
Strain(s): 67 
PubMed: 8165253
DOI: 10.1104/pp.104.3.1095
Sekimoto, H., Sone, Y., Fujii, T. 1994 Regulation of expression of the genes for a sex pheromone by an inducer of the sex pheromone in the Closterium peracerosum-strigosum-littorale complex. Planta, 193, 137-144.
Keywords: Clostreium complex; inducer (of protoplast-release-inducing protein); pheromone; protoplast-release-inducing protein (PR-IP); sexual reproduction
Strain(s): 6768 
PubMed: 7764622
DOI: 10.1007/BF00191617
Sekimoto, H., Sone, Y., Fujii, T. 1995 Biochemical, physiological, and molecular analysis of sexual isolation in the species complex Closterium peracerosum-strigosum-littorale (Chlorophyta). J. Phycol., 31, 611-615.
Keywords: Chlorophyta; Closterium peracerosum-strigosum-littorale complex; conjugation; pheromone; plotoplast-release-inducing protein (PR-IP); sexual isolation
Strain(s): 64656768 
DOI: 10.1111/j.1529-8817.1995.tb02557.x
Sekimoto, H., Tanabe, Y., Takizawa, M., Ito, N., Fukumoto, R., Ito, M. 2003 Expressed sequence tags from the Closterium peracerosum-strigosum-littorale complex, a unicellular charophycean alga, in the sexual reproduction process. DNA Res., 10, 147-153.
Keywords: Closterium; conjugation; EST; sexual reproduction
Strain(s): 6768 
PubMed: 14621293
DOI: 10.1093/dnares/10.4.147
Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Shirosaki, H., Fukuda,H., Demura, T., Ito, M. 2006 Gene expression profiling using cDNA microarray analysis of the sexual reproduction stage of the unicellular charophcean alga Closterium peracerosum-strigosum-littorale comples. Plant Physiol., 141, 271-279.
Strain(s): 6769 
PubMed: 16565296
DOI: 10.1104/pp.116.078048
Sekine, M. 2021 Coupling process of simultaneous desulfurization–nitrification and microalgal cultivation for biogas and effluent from anaerobic digestion. PhD thesis, Soka University, Japan, 128 pp.
Strain(s): 2173 
Sekine, M., Yoshida, A., Akizuki, S., Kishi, M., Toda, T. 2020 Microalgae cultivation using undiluted anaerobic digestate by introducing aerobic nitrification–desulfurization treatment. Wat. Sci. Tech., 82, 1070-1080.
Keywords: aerobic sludge; anaerobic digestion effluent; Chlorella sorokiniana; free ammonia inhibition; post anaerobic digestion treatment; simultaneous bacterial process
Strain(s): 2173 
DOI: 10.2166/wst.2020.153
Sekino, K. & Shiraiwa, Y. 1994 Accumulation and utilization of dissolved inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 35, 353-361.
Keywords: bicarbonate uptake; calcification; CO2 uptake; coccolithophorid; Emiliania huxleyi; inorganic carbon accumulation
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a078603
Sekino, K. & Shiraiwa, Y. 1995 CO2 release from the culture of calcifying and noncalcifying marine unicellular algae. J. Mar. Biotechnol., 3, 101-104.
Strain(s): 837 
Sekino, K. & Shiraiwa, Y. 1996 Evidence for the involvement of mitochondrial respiration in calcification in a marine coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 37, 1030-1033.
Keywords: calcification; CO2 fixation; coccolithophorids; Emiliania huxleyi; mitochondrial respiration; photosynthesis
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a029034
Sekino, K., Kobayashi, H., Shiraiwa, Y. 1996 Role of coccoliths in the utilization of inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi: a survey using intact cells and protoplasts. Plant Cell Physiol., 37, 123-127.
Keywords: calcification; coccolith; coccolithophorid; Emiliania huxleyi; inorganic carbon utilization; protoplast
Strain(s): 837 
DOI: 10.1093/oxfordjournals.pcp.a028921
Selivanova, E. A., Poshvina, D. V., Khlopko, Yu. A., Gogoleva, N. E., Plotnikov, A. O. 2018 Diversity of prokaryotes in planktonic communities of saline sol-iletsk lakes (Orenburg Oblast, Russia). Microbiology, 87, 569-582.
Keywords: saline lakes; biodiversity; prokaryotes; halophilic bacteria; archaea; planktonic communities; high-throughput sequencing; Illumina; 16S rRNA gene
Strain(s): 2041267 
DOI: 10.1134/S0026261718040161
Senavirathna, M. D. H. J. & Jayasekara, M. A. D. D. 2023 Temporal variation of 2-MIB and geosmin production by Pseudanabaena galeata and Phormidium ambiguum exposed to high-intensity light. Water Environ. Res., 95, e10834 (article ID).
Keywords: extreme light; filamentous cyanobacteria; growth suppression; odorous compounds; stress response
Strain(s): 5122119 
PubMed: 36635233
DOI: 10.1002/wer.10834
Senavirathna, M. D. H. J., Muhetaer, G., Atapaththu, K. S. S., Fujino, T. 2021 Egeria densa allelopathy on Microcystis aeruginosa under different light intensities and preliminary insight into inter-parameter relationships. Water Air Soil Pollut., 232, 135 (article ID).
Keywords: Biological control; Cyanobacteria; Coexistence; Environmental management; Macrophytes; Species interactions
Strain(s): 111 
DOI: 10.1007/s11270-021-05088-1
Seo, P-S. & Yokota, A. 2003 The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Micobiol., 49, 191-203.
Keywords: cyanobacteria; gyrB; phylogeny; protein evolution; rpoC1; rpoD1; 16S rDNA
Strain(s): 19212225391042093209521283277 
PubMed: 12949700
DOI: 10.2323/jgam.49.191
Seto, K. & Degawa, Y. 2018 Collimyces mutans gen. et sp. nov. (Rhizophydiales, Collimycetaceae fam. nov.), a new chytrid parasite of Microglena (Volvocales, clade Monadinia). Protist, 169, 507-520.
Keywords: Chytrid; Collimyces mutans; Microglena; parasite; Rhizophydiales; zoospore ultrastructure
Strain(s): 7558582220223527432744 
PubMed: 29935342
DOI: 10.1016/j.protis.2018.02.006
Seto, K., Nakada, T., Tanabe, Y., Yoshida, M., Kagami, M. 2022 Aphelidium parallelum, sp. nov., a new aphelid parasitic on selenastracean green algae. Mycologia, 114, 544-555.
Keywords: Aphelida; Aphelidiomycota; molecular phylogeny; parasitoid; ultrastructure; 1 new taxon
Strain(s): 35385219321954214 
PubMed: 35605094
DOI: 10.1080/00275514.2022.2039487
Setohigashi, Y., Hamaji, T., Hayama, M., Matsuzaki, R., Nozaki, H. 2011 Uniparential inheritance of chloroplast DNA is strict in the isogamous volvocalean Gonium. PLoS One, 6, e19545 (article ID).
Strain(s): 24552457 
PubMed: 21559302
DOI: 10.1371/journal.pone.0019545
Sevilla, J. B., Nakajima, F., Kasuga, I. 2014 Comparison of aquatic and dietary exposure of heavy metals Cd, Cu, and Zn to benthic ostracod Heterocypris incongruens. Environ. Toxicol. Chem., 33, 1624-1630.
Keywords: Aqueous exposure; Heavy metal; Dietary exposure; Ostracod; Sediment
Strain(s): 2170 
PubMed: 24691681
DOI: 10.1002/etc.2596
Shao, J., He, Y., Li, F., Zhang, H., Chen, A., Luo, S., Gu, J.-D. 2016 Growth inhibition and possible mechanism of oleamide against the toxin-producing cyanobacterium Microcystis aeruginosa NIES-843. Ecotoxicology, 25, 225-233.
Keywords: Oleamide; Microcystis aeruginosa; Growth inhibition; Photosynthesis; Microcystins
Strain(s): 843 
PubMed: 26547872
DOI: 10.1007/s10646-015-1582-x
Shao, J., Jiang, Y., Wang, Z., Peng, L., Luo, S., Gu, J., Li, R. 2014 Interactions between algicidal bacteria and the cyanobacterium Microcystis aeruginosa: lytic characteristics and physiological responses in the cyanobacteria. Int. J. Environ. Sci. Technol., 11, 469-476.
Keywords: Bacillus sp.; Gene expressions; Lytic characteristics; Microcystis aeruginosa; Oxidative stress; Photosynthesis inhibition
Strain(s): 843 
DOI: 10.1007/s13762-013-0205-4
Shao, J., Liu, D., Gong, D., Zeng, Q., Yan, Z., Gu, J.-D. 2013 Inhibitory effects of sanguinarine against the cyanobacterium Microcystis aeruginosa NIES-843 and possible mechanisms of action. Aquat. Toxicol., 142-143, 257-263.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 843 
PubMed: 24060579
DOI: 10.1016/j.aquatox.2013.08.019
Shao, J., Peng, L., Luo, S., Yu, G., Gu, J.-D., Lin, S., Li, R. 2013 First report on the allelopathic effect of Tychonema bourrellyi (Cyanobacteria) against Microcystis aeruginosa (Cyanobacteria). J. Appl. Phycol., 25, 1567-1573.
Keywords: Tychonema bourrellyi; Microcystis aeruginosa; Allelopathy; Volatile substances; ß-Ionone; Cyanobacteria
Strain(s): 843 
DOI: 10.1007/s10811-012-9969-z
Shao, J., Wang, Z., Liu, Y., Liu, H., Peng, X., Wei, X., Lei, M., Li, R. 2012 Physiological responses of Microcystis aeruginosa NIES-843 (cyanobacterium) under the stress of chitosan modified kaolinite (CMK) loading. Ecotoxicology, 21, 698-704.
Keywords: Physiological responses; Microcystis aeruginosa; Chitosan modified kaolinite
Strain(s): 843 
PubMed: 22095162
DOI: 10.1007/s10646-011-0828-5
Shao, J., Xu, Y., Wang, Z., Jiang, Y., Yu, G., Peng, X., Li, R. 2011 Elucidating the toxicity targets of β-ionone on photosynthetic system of Microcystis aeruginosa NIES-843 (cyanobacteria). Aquat. Toxicol., 104, 48-55.
Keywords: Microcystis aeruginosa; Photosynthesis; Gene expression; Chlorophyll a fluorescence
Strain(s): 843 
PubMed: 21543049
DOI: 10.1016/j.aquatox.2011.03.014
Shao, J., Yu, G, Wang, Z., Wu, Z, Peng, X., Li, R. 2010 Towards clarification of the inhibitory mechanism of wheat bran leachate on Microcystis aeruginosa NIES-843 (cyanobacteria): physiological responses. Ecotoxicology, 19, 1634-1641.
Keywords: Wheat bran leachate; Microcystis; Gene expression; Photosynthesis
Strain(s): 843 
PubMed: 20882340
DOI: 10.1007/s10646-010-0549-1
Sharifah, E. N. & Eguchi, M. 2011 The phytoplankton Nannochloropsis oculata enhances the ability ofRoseobacter clade bacteria to inhibit the growth of Vibrio anguillarum. PLoS One, 6, e26756 (article ID).
Strain(s): 2145 
PubMed: 22053210
DOI: 10.1371/journal.pone.0026756
Sharifah, E. N. & Eguchi, M. 2012 Benefits of live phytoplankton, Chlorella vulgaris, as a biocontrol agent against fish pathogen Vibrio anguillarum. Fish. Sci., 78, 367-373.
Keywords: Chlorella vulgaris; Vibrio anguillarum; Biocontrol; Sulfitobacter sp.
Strain(s): 1269 
DOI: 10.1007/s12562-011-0465-1
Shatari, Y. & Ogawa, S. 2001 Observation of cell division in Closterium (Zygnematales, Chlorophyta) and its application to the teaching materials in high school biology. Jpn. J. Biol. Educ., 41, 90-99 (in Japanese with English summary).
Keywords: asexual reproduction; cell division; Closterium; teaching material
Strain(s): 52182 
Shen, M., Xu, JL., Tsang, TY., Au, D. W. T. 2010 Toxicity comparison between Chattonella marina and Karenia brevis using marine medaka (Oryzias melastigma): evidence against the suspected ichthyotoxins of Chattonella marina. Chemosphere, 80, 585-591.
Keywords: Harmful algal blooms (HABs); Chattonella marina; Karenia brevis; Marine medaka; Brevetoxins; Free fatty acids
Strain(s): 3 
PubMed: 20444485
DOI: 10.1016/j.chemosphere.2010.03.051
Shen, O., Wang, Q., Miao, H., Shimada, M., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M., Shimizu, K. 2021 Temperature affects growth, geosmin/2-methylisoborneol production, and gene expression in two cyanobacterial species. Environ. Sci. Pollut. Res., 29, 12017–12026.
Keywords: Cyanobacteria; Temperature; Cell growth; Geosmin; 2-MIB; Gene expression
Strain(s): 512824 
PubMed: 34558048
DOI: 10.1007/s11356-021-16593-5
Shen, Q., Shimizu, K., Miao, H., Tsukino, S., Utsumi, M., Lei, Z., Zhang, Z., Nishimura, O., Asada, Y., Fujimoto, N., Takanashi, H., Akiba, M. 2020 Effects of elevated nitrogen on the growth and geosmin productivity of Dolichospermum smithii. Environ. Sci. Pollut. Res., 28, 177–184.
Keywords: Geosmin; geoA Expression; Cyanobacteria; Nitrogen; Earthy-musty odor
Strain(s): 824 
PubMed: 32803599
DOI: 10.1007/s11356-020-10429-4
Shen, X. F., Xu, Y. P., Jiang, Y. F., Gao, L. J., Tong, X. Q., Gong, J., Yang, Y. F., Zeng, R. J. 2024 Evaluating nutrient limitation in co-culture of Chlorella pyrenoidosa and Rhodobacter sphaeroides. Sci. Total Environ., 906, 167706 (article ID).
Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Nitrogen starvation
Strain(s): 2168 
PubMed: 37820812
DOI: 10.1016/j.scitotenv.2023.167706
Shen, X. F., Xu, Y. P., Tong, X. Q., Huang, Q., Zhang, S., Gong, J., Chu, F. F., Zeng, R. J. 2022 The mechanism of carbon source utilization by microalgae when co-cultivated with photosynthetic bacteria. Bioresour. Technol., 365, 28152 (article ID).
Keywords: Microalgae; Photosynthetic bacteria; FAME; iTRAQ; Carbon mechanism
Strain(s): 22721682280 
PubMed: 36265788
DOI: 10.1016/j.biortech.2022.128152
Shen, X.-F., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Biosynthesis of high yield fatty acids from Chlorella vulgaris NIES-227 under nitrogen starvation stress during heterotrophic cultivation. Water Res., 81, 294-300.
Keywords: Microalgae; Nitrogen starvation; Heterotrophic cultivation; Fatty acid content; Fatty acid yield; Glucose
Strain(s): 227 
PubMed: 26081436
DOI: 10.1016/j.watres.2015.06.003
Shen, X.-F., Liu, J.-J., Chauhan, A. S., Hu, H., Ma, L.-L., Lam, P.K.S., Zeng, R. J. 2016 Combining nitrogen starvation with sufficient phosphorus supply for enhanced biodiesel productivity of Chlorella vulgaris fed on acetate. Algal Res., 17, 261-267.
Keywords: Heterotrophic cultivation; Lipid productivity; Biodiesel; Microalgae; Nutrient regulation; pH control
Strain(s): 227 
DOI: 10.1016/j.algal.2016.05.018
Shen, X.-F., Liu, J.-J., Chu, F.-F., Lam, P.K.S., Zeng, R.J. 2015 Enhancement of FAME productivity of Scenedesmus obliquus by combining nitrogen deficiency with sufficient phosphorus supply in heterotrophic cultivation. Appl. Energy, 158, 348-354.
Keywords: Scenedesmus obliquus; Heterotrophic cultivation; Acetate; Nitrogen deficiency; Phosphorus; Biodiesel productivity
Strain(s): 2280 
DOI: 10.1016/j.apenergy.2015.08.057
Shen, X.-F., Qin, Q.-W., Yan, S.-K., Huang, J.-L., Liu, K., Zhou, S.-B. 2019 Biodiesel production from Chlorella vulgaris under nitrogen starvation in autotrophic, heterotrophic, and mixotrophic cultures. J. Appl. Phycol., 31, 1589–1596.
Keywords: Fatty acid; Chlorella vulgaris; Chlorophyta; Heterotrophic cultivation; Mixotrophic cultivation; Nitrogen starvation; iTRAQ analysis
Strain(s): 227 
DOI: 10.1007/s10811-019-01765-1
Shen, X-F., Gao, L-J., Zhou, S-B., Huang, J-L., Wu, C-Z., Qin, Q-W., Zeng, R. J. 2020 High fatty acid productivity from Scenedesmus obliquus in heterotrophic cultivation with glucose and soybean processing wastewater via nitrogen and phosphorus regulation. Sci. Total Environ., , 134596 (article ID).
Keywords: Scenedesmus obliquus; heterotrophic cultivation; soybean processing wastewater; nitrogen deficiency; phosphorus; biodiesel productivity
Strain(s): 2280 
PubMed: 31780158
DOI: 10.1016/j.scitotenv.2019.134596
Shen, X-F., Hu, H., Ma, L-L., Lam, P. K. S., Yan, S-K., Zhou, S-B., Zeng, R. J. 2018 FAMEs production from Scenedesmus obliquus in autotrophic, heterotrophic and mixotrophic cultures under different nitrogen conditions. Environ. Sci.-Wat. Res. Technol., 4, 461-468.
Strain(s): 2280 
DOI: 10.1039/C7EW00470B
Sheng, B., Fan, F., Huang, J. K., Bai, W. M., Wang, J., Li, S. L., Li, W., Wan, M. X., Li, Y. G. 2018 Investigation on models for light distribution of Haematococcus pluvialis during astaxanthin accumulation stage with an application case. Algal Res., 33, 182-189.
Keywords: Light attenuation model; Haematococcus pluvialis; CFD;Induction experiment
Strain(s): 144 
DOI: 10.1016/j.algal.2018.05.011
Shi, X., Chang, X., Guo, X., Zhao, C., Tong, S. 2021 Calcification moderates the biochemical responses of Gephyrocapsa oceanica to ocean acidification. Mar. Biol. Res., 17, 569-575.
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DOI: 10.1080/17451000.2021.2016841
Shi, Y., Liu, Y., Zhang, J., Gao, B. 2019 Regulation of five-antibiotic mixture on Microcystis aeruginosa exposed to sublethal doses of ultraviolet radiation. Int. J. Environ. Sci. Technol., 16, 8229–8238.
Keywords: Cyanobacterial removal; Antibiotics contamination; Photosynthesis; Microcystins ; Antioxidant responses
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DOI: 10.1007/s13762-019-02318-2
Shiba, K. & Inaba, K. 2017 Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae. J. Plant Res., 130, 465-473.
Keywords: Calaxin; Cilia; Dynein; Opisthokont; Prasinophyte; Sperm flagella
Strain(s): 626 
PubMed: 28424932
DOI: 10.1007/s10265-017-0931-7
Shibakami, M. & Sohma, M. 2017 Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films. Carbohydr. Polym., 155, 416-424.
Keywords: Paramylon; β-1,3-glucan; Thermoplastic; Acylation; Euglena
Strain(s): 48 
DOI: 10.1016/j.carbpol.2016.08.093
Shibakami, M. & Sohma, M. 2018 Thermal, crystalline, and pressure-sensitive adhesive properties of paramylon monoesters derived from an euglenoid polysaccharide. Carbohydr. Polym., 200, 239-247.
Strain(s): 48 
PubMed: 30177162
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Shibakami, M., Sohma, M., Hayashi, M. 2012 Fabrication of doughnut-shaped particles from spheroidal paramylon granules of Euglena gracilis using acetylation reaction. Carbohydr. Polym., 87, 452-456.
Keywords: Paramylon; B-1,3-Glucan; Paramylon doughnuts; Euglena gracilis; Acetylation
Strain(s): 48 
DOI: 10.1016/j.carbpol.2011.08.012
Shibata, A., Takahashi, F., Imamura, N., Kasahara, M. 2021 Characteristics of maltose transport system in the endosymbiont Chlorella variabilis of Paramecium bursaria. Phycol. Res., 69, 219-225.
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Shibata, K., Morimura, Y., Tamiya, H. 1964 Precise measurement of the change of statistical distribution of cell size occurring during the synchronous culture of Chlorella. Plant Cell Physiol., 5, 315-320.
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Shibata, M., Kashino, Y., Satoh, K., Koike, H. 2001 Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a glaucocystophyte, Cyanophora paradoxa. Plant Cell Physiol., 42, 733-741.
Keywords: Cyanophora paradoxa; glaucocystophyte; oxygen evolution; photosystem II; PsbO; thylakoid membranes
Strain(s): 547 
PubMed: 11479380
DOI: 10.1093/pcp/pce092
Shibukawa, K., Takamura, Y., Takao, E., Irie, M., Yagi, O. 1986 Studies on the growth factors of an axenic clone of the cyanobacterium Microcystis aeruginosa K-3A. Jpn. J. Limnol., 47, 247-255 (in Japanese with English summary).
Keywords: cyanobacteria; Microcystis; vitamin B12; growth factor
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Shih, C., Chen, H., Lee, H., Tsai, H. 2015 Purple chromoprotein gene serves as a new selection marker for transgenesis of the microalga Nannochloropsis oculata. PLoS One, 10, e0120780 (article ID).
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Shihira, I. & Krauss, R. W. 1965 Chlorella. Physiology and taxonomy of forty-one isolates. , University of Maryland, College Park. pp. 1-97.
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Shihira-Ishikawa, I., Osafune, T., Ehara, T., Ohkuro, I., Hase, E. 1977 An early light-independent phase of chloroplast development in dark-grown cells of Euglena gracilis Z. I. Dependence of the plastid development on previous culture conditions. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 445-454.
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Shikata, T., Kitatsuji, S., Yuasa, K. 2023 Strain, cell density, and nutrient condition affect patterns of diurnal vertical migration and superoxide production in a red-tide alga. Front. Cell. Dev. Biol., 11, 1134227 (article ID).
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PubMed: 37123416
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Shikata, T., Taniguchi, E., Sakamoto, S., Kitatsuji, S., Yamasaki, Y., Yoshida, M., Oikawa, H. 2020 Phylogeny, growth and toxicity of the noxious red-tide dinoflagellate Alexandrium leei in Japan. Reg. Stud. Mar. Sci., 36, 101265 (article ID).
Keywords: Fish; Haemolytic activity; Photoinhibition; rDNA; Rotifer; Temperature
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DOI: 10.1016/j.rsma.2020.101265
Shikata, T., Yuasa, K., Kitatsuji, S., Sakamoto, S., Akita, K., Fujinami, Y., Nishiyama, Y., Kotake, T., Tanaka, R., Yamasaki, Y. 2021 Superoxide Production by the Red Tide-Producing Chattonella marina Complex (Raphidophyceae) Correlates with Toxicity to Aquacultured Fishes. Antioxidants, 10, 1635 (article ID).
Keywords: harmful algal bloom; interstrain variation; oxidant stress; reactive oxygen species (ROS)
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PubMed: 34679769
DOI: 10.3390/antiox10101635
Shimada, A., Maruyama, T., Miyachi, S. 1996 Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankters, Prochlorococcus marinus and Synechococcus sp.. Mar. Biol., 127, 15-23.
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Shimada, K., Kitamura, N., Yoshida, Y., Matsushima, H., Asada, Y. 2010 Effects of water soluble extract from the dead leaves of deciduous trees on the growth control of toxic cyanobacteria like Microcystis aeruginosa. In Water Pollution X, Eds. by Marinov, A. M. & Brebbia, C. A., WIT Press, Bucharest. pp. 71-82.
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Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017 Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis. Sci Rep., 7, 41022 (article ID).
Strain(s): 48 
PubMed: 28106164
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Shimakawa, G., Murakami, A., Niwa, K., Matsuda, Y., Wada, A., Miyake, C. 2019 Comparative analysis of strategies to prepare electron sinks in aquatic photoautotrophs. Photosynth. Res., 139, 401–411.
Keywords: Reactive oxygen species; P700 oxidation; Photosystem I; Seaweeds
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PubMed: 29845382
DOI: 10.1007/s11120-018-0522-z
Shimakawa, G., Shoguchi, E., Burlacot, A., Ifuku, K., Che, Y., Kumazawa, M., Tanaka, K., Nakanishi, S. 2021 Coral symbionts evolved a functional polycistronic flavodiiron gene. Photosynth. Res., 151, 113–124.
Keywords: Flavodiiron proteins; Polycistronic gene; Gene fusion; Coral symbionts; Evolution
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PubMed: 34309771
DOI: 10.1007/s11120-021-00867-7
Shimasaki, Y., Mukai, K., Takai, Y., Qiu, X., Oshima, Y. 2021 Recent progress in the study of peroxiredoxin in the harmful algal bloom species Chattonella marina. Antioxidants, 10, 162 (article ID).
Keywords: 2-Cys peroxiredoxin; antioxidant enzyme; growth potential; photosynthesis; oxidative stress
Strain(s): 13 
PubMed: 33499182
DOI: 10.3390/antiox10020162
Shimasaki, Y., Tsuyama, M., Tasmin, R., Khanam, M. R. M., Qiu, X., Oshima, Y. 2015 Comparative study of toxicological responses of chlorophyllrelated parameters in the marine diatom Skeletonema sp. exposed to tributyltin and Irgarol. Jpn. J. Environ. Toxicol., 18, 1-10.
Keywords: tributyltin; Irgarol; diatom; chlorophyll; photosynthesis
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DOI: 10.11403/jset.18.1
Shimba, S., Unno, K., Okada, S. 1993 Characteristics of the photosynthetic metabolism of carbon in deuterated Chlorella ellipsoidea C-27. Plant Cell Physiol., 34, 255-262.
Keywords: Chlorella ellipsoidea; deuterium; isotope effect; photosynthetic metabolism of carbon
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DOI: 10.1093/oxfordjournals.pcp.a078415
Shimizu, I., Yamashita, K., Tokunaga, E. 2022 Development of a simple fabrication method for magnetic micro stir bars and induction of rotational motion in Chlamydomonas reinhardtii. Micromachines, 13, 1842 (article ID).
Keywords: magnetic micro stirrer bar; microchip; motion analysis; microalga; Chlamydomonas; neodymium magnet; flagella; orbital motion
Strain(s): 2238 
PubMed: 36363863
DOI: 10.3390/mi13111842
Shimizu, K., Sano, T., Kubota, R., Kobayashi, N., Tahara, M., Obama, T., Sugimoto, N., Nishimura, T., Ikarashi, Y. 2014 Effects of the amino acid constituents of microcystin variants on cytotoxicity to primary cultured rat hepatocytes. Toxins, 6, 168-179.
Keywords: microcystin; variants; cytotoxicity; primary cultured rat hepatocytes; environmental water
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PubMed: 24380975
DOI: 10.3390/toxins6010168
Shimizu, K., Utsumi, M., Okano, K., Itayama, T., Iwami, N., Maseda, H., Kinohira, H., Li, J., Inamori, Y., Zhang, Z., Sugiura, N. 2016 Removal of Microcystis aeruginosa cells and microcystin-LR using ceramic carrier in a continuous flow bioreactor. Jpn. J. Water Treat. Biol., 52, 35-43.
Keywords: protozoa; water treatment; ceramic carrier; microcystin-producing; cyanobacteria
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Shimizu, T., Oda, T., Ito, H., Imai, I. 2017 Isolation and characterization of algicidal bacteria and its effect on a musty odor-producing cyanobacterium Dolichospermum crassum in a reservoir. Water Sci. Technol.-Water Supply, 17, 792-798.
Keywords: algicidal bacteria; Anabaena crassa; Dolichospermum crassum; geosmin; musty odor; Rheinheimera spp
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DOI: 10.2166/ws.2016.179
Shimogawara, K. & Muto, S. 1989 Heat shock induced change in protein ubiquitination in Chlamydomonas. Plant Cell Physiol., 30, 9-16.
Keywords: ATP-dependent proteolytic system; Chlamydomonas; heat shock response; protein degradation; ubiquitin
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Shimonaga, T., Fujiwara, S., Kaneko, M., Izumo, A., Nihei, S., Francisco, P. B., Satoh, A., Fujita, Naoko., Nakamura, Y., Tsuzuki, M. 2007 Variation in Storage α-polyglucans of red algae: amylose and semi-amylopectin types in Porphyridium and goycogen type in Cyanidium. Mar. Biotechnol., 9, 192-202.
Keywords: Amylose; glycogen; granule-bound starch synthase; red algae; semi-amylopection
Strain(s): 5512138 
PubMed: 17160635
DOI: 10.1007/s10126-006-6104-7
Shimonaga, T., Konishi, M., Oyama, Y., Fujiwara, S., Satoh, A., Fujita, N., Colleoni, C., Buléon, A., Putaux, J.-L., Ball, S. G., Yokoyma, A., Hara, Y., Nakamura, Y., Tsuzuki, M. 2008 Variation in Storage α-polyglucans of the Porphyridiales (Rhodophyta). Plant Cell Physiol., 49, 103-116.
Keywords: Amylose; Floridean starch; Glycogen; Porphyridiales; Rhodophyta; Semi-amylopection
Strain(s): 181442505305512138216022582280 
PubMed: 18079144
DOI: 10.1093/pcp/pcm172
Shimura, Y., Fujisawa, T., Hirose, Y., Misawa, N., Kanesaki, Y., Nakamura, Y., Kawachi, M. 2021 Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters. Harmful Algae, 101, 101942 (article ID).
Keywords: 5S ribosomal RNA gene; Aeruginosin; Horizontal gene transfer; Microcystis; Prenyltransferase; Oscillatorin
Strain(s): 204 
PubMed: 33526179
DOI: 10.1016/j.hal.2020.101942
Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412.
Keywords: comparative genomics; cyanobacteria; genome sequence; nitrogen fixation
Strain(s): 2104 
PubMed: 26494835
DOI: 10.1093/dnares/dsv022
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017 Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970. GenomeA, 5, e00139-17 (article ID).
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Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Aeruginosins 205A and -B, serine protease inhibitory glycopeptides from the cyanobacterium Oscillatoria agardhii (NIES-205). J. Org. Chem., 62, 1810-1813.
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Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Anabaenopeptins E and F, two new cyclic peptides from the cyanobacterium Oscillatoria agardhii (NIES-204). J. Nat. Prod., 60, 139-141.
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DOI: 10.1021/np960597p
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DOI: 10.1016/0040-4020(96)00377-8
Shinobu, K., Abe, S., Asano, K., Abe, T. 1992 On the laboratory experiment of algal culturing (AGP-test) [Sôrui baiyô no shitsunai jikken (AGP shiken) ni tsuite]. Heisei 4-nendo Tôhoku Chihô Kensetsu-kyoku Kan-nai Gijutsu Kenkyû Happyôkai Shiryô, Kyô-28, 151-154 (in Japanese).
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Shinozaki, A., Sato, N., Hayashi, Y. 2009 Peroxisomal targeting signals in green algae. Protoplasma, 235, 57-66.
Keywords: Closterium; green algae; peroxisomal targeting signal (PTS); peroxisome; transport
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PubMed: 19214701
DOI: 10.1007/s00709-009-0031-1
Shirabe, T., Ito, K., Yoshimura, E. 2008 Dequenching of Cu(I)-bathocuproinedisulfonate complexes for high-performance liquid chromatographic determination of phytochelatins, heavy-metal-binding peptides produced by the primitive red alga Cyanidioschyzon merolae. Anal. Chem., 80, 9360-9362.
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PubMed: 19551996
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Shirai, Y., Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl. Environ. Microbiol., 74, 4022-4027.
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PubMed: 18469125
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Shiraishi, H. 2015 Association of heterotrophic bacteria with aggregated Arthrospira platensis exopolysaccharides: implications in the induction of axenic cultures. Biosci. Biotechnol. Biochem., 79, 331-341.
Keywords: cyanobacteria; Arthrospira platensis; exopolysaccharides; axenic cultures; Alcian blue
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PubMed: 25333502
DOI: 10.1080/09168451.2014.972333
Shiraishi, H. 2016 Cryopreservation of the edible alkalophilic cyanobacterium Arthrospira platensis. Biosci. Biotechnol. Biochem., 80, 2051-2057.
Keywords: cyanobacteria; dietary supplements; spirulina; Arthrospira platensis; cryopreservation
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DOI: 10.1080/09168451.2016.1189320
Shiraishi, H. & Nishida, H. 2023 Complete genome sequence of the edible filamentous cyanobacterium Arthrospira platensis NIES-39, based on long-read sequencing. Microbiol. Resour. Ann., 12, e0113922 (article ID).
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PubMed: 36537808
DOI: 10.1128/mra.01139-22
Shiraishi, H. & Toyoda, A. 2021 The use of a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide–based colorimetric assay in the viability analysis of the filamentous cyanobacterium Arthrospira platensis. Bioscience, Biotechnology, and Biochemistry, 85, 739-742.
Keywords: colorimetric viability assay; cyanobacteria; heat sensitivity; spirulina
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PubMed: 33624771
DOI: 10.1093/bbb/zbaa050
Shiraishi, H., Tabuse, Y. 2013 The AplI restriction-modification system in an edible cyanobacterium, Arthrospira (Spirulina) platensis NIES-39, recognizes the nucleotid sequence 5'-CTGCAG-3'. Biosci. Biotechnol. Biochem., 77, 782-788.
Keywords: Arthrospira platensis; Spirulina; restriction enzyme; DNA methyltransferase; edible cyanobacteria
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PubMed: 23563565
DOI: 10.1271/bbb.120919
Shiraiwa, Y. 2003 Physiological regulation of carbon fixation in the photosynthesis and calcification of coccolithophorids. Comp. Biochem. Physiol. B-Biochem. Mol. Biol., 136, 775-783.
Keywords: carbon dioxide fixation; calcification; calcium carbonate crystal; cell growth; coccolith; coccolithophorids; Emiliania huxleyi; photosynthesis; nutrient-depletion effect; Warburg effect
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PubMed: 14662302
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Shiraiwa, Y. & Kayano, K. 2007 Coccolith. In Development of New Functional Materials Inspired by Biomineralization , Ed. By Kato, T., CMC Publications, Tokyo, pp. 52-63.
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Shiraiwa, Y. & Miyachi, S. 1985 Effects of temperature and CO2 concentration on induction of carbonic anhydrase and changes in efficiency of photosynthesis in Chlorella vulgaris 11h. Plant Cell Physiol., 26, 543-549.
Keywords: carbonic anhydrase; Chlorella vulgaris; CO2 concentration; photosynthesis; temperature
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DOI: 10.1093/oxfordjournals.pcp.a076938
Shiraiwa, Y. & Miyachi, S. 1985 Role of carbonic anhydrase in photosynthesis of blue-green alga (cyanobacterium) Anabaena variabilis ATCC 29413. Plant Cell Physiol., 26, 109-116.
Keywords: Anabaena variabilis ATCC 29413; carbonic anhydrase; CO2 effect; CO2 transport; cyanobacterium; photosynthesis
Strain(s): 2095 
DOI: 10.1093/oxfordjournals.pcp.a076877
Shiraiwa, Y. & Miyachi, S. 1993 Factors controlling induction of carbonic anhydrase and efficiency of photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 24, 919-923.
Keywords: carbonic anhydrase; Chlorella vulgaris (11h cell); CO2 fixation; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076596
Shiraiwa, Y., Danbara, A., Kanke, Y. 2004 Characterization of highly oxygen-sensitive photosynthesis in coccolithophorids. Jpn. J. Phycol. (Sôrui), 52, Suppl., 87-94.
Keywords: CO2 fixation; coccolithophorids; Emiliania huxleyi; glycolate pathway; O2 effect; O2 inhibition; photorespiratory nitrogen cycle; Warburg effect
Strain(s): 837838 
Shiraiwa, Y., Fakler, J., Miyachi, S. 1981 Factors controlling carbonic anhydrase activity in Chlorella vulgalis 11h. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, pp. 493-499.
Strain(s): 2160 
Shiraiwa, Y., Goyal, A., Tolbert, N. E. 1993 Alkalization of the medium by unicellular green algae during uptake of dissolved inorganic carbon. Plant Cell Physiol., 34, 649-657.
Keywords: alkalization; dissolved inorganic carbon concentrating mechanism; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a078467
Shiraiwa, Y., Hatano-Sugimoto, Y., Satoh, M. 2003 Regulation of intracellular calcification and algal growth by nutrient supply in coccolithophorids. In Biomineralization (BIOM2001): formation, diversity, evolution and application, Proceedings of th 8th International Symposium on Biomineralization, Eds. by Kobayashi & Ozawa, pp. 241-246.
Keywords: algal bloom; calcification; coccolithophorid; Emiliania huxleyi; Gephyrocapsa oceanica; nitrate; phosphate; nutrient-depletion
Strain(s): 837838 
Shiraiwa, Y., Yokoyama, S., Satoh, A. 1991 pH-dependent regulation of carbonic anhydrase induction and change in photosynthesis during adaptation of Chlorella cells to low CO2. Jpn. J. Phycol. (Sôrui), 39, 355-362.
Strain(s): 2170 
Shiratori, T., Akinori, Y., Ishida, K-I. 2020 Morphology, ultrastructure, and phylogeny of two novel species of Ventrifissura (V. oblonga n. sp. and V. velata n. sp., Thecofilosea, Cercozoa). Protist, 171, 125731 (article ID).
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PubMed: 32464531
DOI: 10.1016/j.protis.2020.125731
Shiratori, T., Fujita, S., Shimizu, T., Nakayama, T., Ishida, K-I. 2017 Viridiuvalis adhaerens gen. et sp. nov., a novel colony-forming chlorarachniophyte. J. Plant Res., 130, 999–1012.
Keywords: Chlorarachniophyceae; Chlorarachniophycota; Phylogeny; Taxonomy; Viridiuvalis adhaerens; Ultrastructure
Strain(s): 4109 
PubMed: 28642986
DOI: 10.1007/s10265-017-0961-1
Shiratori, T., Ishida, K-I. 2016 Trachyrhizium urniformis n. g., n. sp., a novel marine filose thecate amoeba related to a cercozoan environmental clade (novel Clade 4). J. Eucaryot. Microbiol., 63, 722-731.
Keywords: Cercozoa; phylogeny; SSU rRNA gene; Thecofilosea; ultrastructure
Strain(s): 3876 
PubMed: 27061962
DOI: 10.1111/jeu.12319
Shiratori, T., Suzuki, S., Kakizawa, Y., Ishida, K-I. 2019 Phagocytosis-like cell engulfment by a planctomycete bacterium. Nat. Commun., 10, 5529 (article ID).
Strain(s): 2670 
PubMed: 31827088
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Shiratori, T., Yabuki, A., Ishida, K-I. 2012 Esquamula lacrimiformis n.g., n. sp., a new member of Thaumatomonads that lacks siliceous scales. J. Eucaryot. Microbiol., 59, 527-536.
Keywords: Cercozoa; extrusome; microbody; phylogeny; taxonomy; ultrastructure
Strain(s): 2745 
PubMed: 22742560
DOI: 10.1111/j.1550-7408.2012.00635.x
Shirokawa, Y. & Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID).
Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution
Strain(s): 2364 
PubMed: 27807268
DOI: 10.1098/rspb.2016.1632
Shirokawa, Y. & Shimada, M. 2020 Synchronized emergence under diatom sperm competition. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 287, 20201074 (article ID).
Keywords: sexual differentiation; evolutionary game theory; synchronization; centric diatom; spem competition
Strain(s): 2364 
PubMed: 33023410
DOI: 10.1098/rspb.2020.1074
Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253.
Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes
Strain(s): 236323642365 
DOI: 10.1080/09670262.2012.697580
Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503 (article ID).
Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system
Strain(s): 2364 
PubMed: 23760641
DOI: 10.1098/rspb.2013.0503
Shitanda, I., Takada, K., Sakai, Y., Tatsuma, T. 2005 Compact amperometric algal biosensors for the evaluation of water toxicity. Anal. Chim. Acta, 530, 191-197.
Keywords: amperometric biosensor; Chlorella vulgaris; algae; alginate gel; polyion complex; herbicides
Strain(s): 227 
DOI: 10.1016/j.aca.2004.09.073
Shizuka, K., Ikenaga, M., Murase, J., Nakayama, N., Matsuya, N., Kakino, W., Taruya, H., Maie, N. 2020 Diversity of 2-MIB-producing cyanobacteria in Lake Ogawara: microscopic and molecular ecological approaches. Aquacult. Sci., 68, 9-23.
Keywords: Pseudanabaena; Amplicon sequencing; Real-time PCR; 2-MIB
Strain(s): 4062406342374238 
DOI: 10.11233/aquaculturesci.68.9
Shoguchi, E., Beedessee, G., Hisata, K., Tada, I., Narisoko, H., Satoh, N., Kawachi, M., Shinzato, C. 2021 A new dinoflagellate genome illuminates a conserved gene cluster involved in sunscreen biosynthesis. Genome Biol. Evol., 13, evaa235 (article ID).
Keywords: cyanobacterial bloom; comparative genomics; ecophysiology; genomic complexity; metatranscriptome; Microcystis aeruginosa; adaptation; cyanobacteria; ecogenomics; water blooms
Strain(s): 2907 
PubMed: 33146374
DOI: 10.1093/gbe/evaa235
Shoguchi, E., Beedessee, G., Tada, I., Hisata, K., Kawashima, T., Takeuchi, T., Arakaki, N., Fujie, M., Koyanagi, R., Roy, M. C., Kawachi, M., Hidaka, M., Satoh, N., Shinzato, C. 2018 Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. BMC Genomics, 19, 458 (article ID).
Keywords: Dinoflagellates; Evolutionary genomics; Symbiodinium; Mycosporine-like amino acids; Symbiosis
Strain(s): 40764077 
PubMed: 29898658
DOI: 10.1186/s12864-018-4857-9
Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding
Strain(s): 3808 
PubMed: 26199191
DOI: 10.1093/gbe/evv137
Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
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DOI: 10.1016/j.cub.2013.05.062
Shoji, R., Nkayama, H., Sakai, Y., Mohri, S., Yamada, M. 2008 Evaluation of the ecotoxicity of solid wastes using rapid leaching test and bioassays. J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng. , 43, 1048-1053.
Keywords: Heavy metals; ecotoxicity; organic compounds; rapid leaching test; bioassays
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PubMed: 8569319
DOI: 10.1080/10934520802059995
Shono, M., Hara, Y., Wada, M., Fujii, T. 1996 A sodium pump in the plasma membrane of the marine alga Heterosigma akashiwo. Plant Cell Physiol., 37, 385-388.
Keywords: Heterosigma akashiwo; marine alga; Na+ transport; Na+-APTase [EC 3.6.1.3]; plasma membrane
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a028957
Shono, M., Wada, M., Fujii, T. 1995 Partial purification of a Na+-ATPase from the plasma membrane of the marine alga Heterosigma akashiwo. Plant Physiol., 108, 1615-1621.
Strain(s): 6 
PubMed: 12228567
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Silas, S., Makarova, KS., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S.9, Krishnamurthy, SR., Fu, BXH., Hansen, LL., Wang, D., Sullivan, MB., Millard, A., Clokie, MR., Bhaya, D., Lambowitz, AM., Kyrpides, NC., Koonin, EV., Fire, AZ. 2017 On the origin of reverse transcriptase using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires. mBio, 8, e00897-17 (article ID).
Keywords: CRISPR; RNA spacer acquisition; cyanobacteria; deep sequencing; horizontal gene transfer; host-parasite relationship; phylogeny; reverse transcriptase
Strain(s): 39 
PubMed: 28698278
DOI: 10.1128/mBio.00897-17
Simon, A., Glockner, G., Felder, M., Melkonian, M., Becker, B. 2006 EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae). BMC Plant Biol., 6, 2 (article ID).
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Singh, H. W., Wada, R. M., Sherwood, A. R. 2018 Diurnal patterns of airborne algae in the Hawaiian Islands: a preliminary study. Aerobiologia, 34, 363–373.
Keywords: Chlorophyta; Cyanobacteria; Green algae; Trade winds; Universal Plastid Amplicon
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DOI: 10.1007/s10453-018-9519-5
Six, C., Finkel, Z. V., Rodriguez, F., Marie, D., Partensky, F., Campbell, D. A. 2008 Contrasting photoacclimation costs in ectotypes of the marine eukayotic picoplankter Ostreococcus. Limnol. Oceanogr., 53, 255-265.
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Škaloud, P., Nemjová, K., Veselá, J., Cˇ erná, K., Neustupa,J. 2011 A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists. Mol. Phylogenet. Evol., 61, 933-943.
Keywords: Biogeography; Evolution; Micrasterias; Morphology; Phylogeny; Protists
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DOI: 10.1016/j.ympev.2011.08.018
Skjelbred, B., Edvardsen, B., Andersen, T. 2012 Environmental optima for seven strains of Pseudochattonella (Dictyochophyceae, Heterokonta). J. Phycol., 49, 54-60.
Keywords: compensation irradiance; growth rates; light; loss rates; Pseudochattonella; salinity; saturating irradiance; temperature
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PubMed: 27008388
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Skjelbred, B., Horsberg, T. E., Tollefsen, K. E., Andersen, T., Edvardsen, B. 2011 Toxicity of the ichthyotoxic marine flagellate Pseudochattonella (Dictyochophyceae, Heterokonta) assessed by six bioassays. Harmful Algae, 10, 144-154.
Keywords: Bioassays; Cytotoxicity assays; Fish exposure; Ichthyotoxicity; Pseudochattonella
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Smith, D. R. & Craig, R. J. 2021 Does mitochondrial DNA replication in Chlamydomonas require a reverse transcriptase? New Phytol., 229, 1192-1195.
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Smith, D. R., Burki, F., Yamada, T., Grimwood, J., Grigoriev, I. V., Van Etten, J. L., Keeling, P. J. 2011 The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One, 6, e23624 (article ID).
Strain(s): 2166 
PubMed: 21887287
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Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797.
Keywords: Chlamydomonas; Gonium; Pleodorina; Volvox; mitochondrion; chloroplast
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Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.
Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution
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Smith, D. R., Lee, R. W. 2010 Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol. Biol. Evol., 27, 2244-2256.
Keywords: genetic diversity; mitochondrial genome; plastid genome; Chlamydomonas reinhardtii; green algae; genome architecture
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Snell, T. W. & Boyer, E. M. 1988 Thresholds for mictic female production in the rotifer Brachionus plicatilis (muller). J. Exp. Mar. Biol. Ecol., 124, 73-85.
Keywords: food level; mixis; population density threshold; reproduction; rotifer; sex
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Soma, Y., Imaizumi, T., Yagi, K., Kasuga, S. 1993 Estimation of algal succession in lake water using HPLC analysis of pigments. Can. J. Fish. Aquat. Sci., 50, 1142-1146.
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Song, C., Suzaki, T. 2013 Improved preservation of organelies in Paramecium bursaria by freeze-substitution with glutaraldehyde and osmium tetroxide. J. Electr. Microsc. Technol. Med. Biol., 27, 1-8.
Keywords: Paramecium bursaria; endosymbiosis; cryofixation; ultrastructural preservation; freeze-substitution
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Song, H., Wang, Q., Liu, X., Hu, Y., Long, J., Liu, G., Hu, Z. 2018 Phylogenic diversity and taxonomic problems of the Dictyosphaerium morphotype within the Parachlorella clade (Chlorellaceae, Trebouxiophyceae). J. Eucaryot. Microbiol., 65, 382-391.
Keywords: Coccoid green algae; ITS; molecular; morphology; SSU
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Soulier, N. & Bryant, D. A. 2020 The structural basis of far-red light absorbance by allophycocyanins. Photosynth. Res., 147, 11–26.
Keywords: Far-red light photoacclimation; Low-light photoacclimation; Photosynthesis; Phycobiliproteins; Phycobilisomes; Phycocyanobilin; Site-directed mutagenesis
Strain(s): 462134 
PubMed: 33058014
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Spencer, K. G., Kimpel, D. L., Fisher, M. L., Togasaki, R. K., Miyachi, S. 1983 Carbonic anhydrase in Chlamydomonas reinhardtii II. Requirements for carbonic anhydrase induction. Plant Cell Physiol., 24, 301-304.
Keywords: carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction; photosynthesis; photosynthetic mutants
Strain(s): 2238 
DOI: 10.1093/pcp/24.2.301
Spoof, L. 2004 High-performance liquid chromatography of microcystins and nodularins, cyanobacterial peptide toxins. PhD thesis, Åbo Akademi University, Turku, Finland, 73 pp.
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Spoof, L., Jaakkola, S., Važić, T., Häggqvist, K., Kirkkala, T., Ventelä, A. M., Kirkkala, T., Svirčev, Z., Meriluoto, J. 2020 Elimination of cyanobacteria and microcystins in irrigation water—effects of hydrogen peroxide treatment. Environ. Sci. Pollut. Res., 27, 8638–8652.
Keywords: Cyanobacteria; Microcystins; Irrigation water; Hydrogen peroxide; Spinach
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Spoof, L., Neffling, M.-R., Meriluoto, J. 2010 Fast separation of microcystins and nodularins on narrow-bore reversed-phase columns coupled to a conventional HPLC system. Toxicon, 55, 954-964.
Keywords: Microcystins; Nodularins; Fast high-performance liquid; chromatography
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Srivastava, A., Ko,S-R., Ahn, C-Y., Oh, H-M., Ravi, A. K., Asthana, R. K. 2016 Microcystin biosynthesis and mcyA expression in geographically distinct Microcystis strains under different nitrogen, phosphorus, and boron regimes. Biomed Res. Int., 2016, 5985987 (article ID).
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Starr, R. C. 1968 Cellular differentiation in Volvox. Proc. Natl. Acad. Sci. U. S. A., 59, 1082-1088.
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Stawiarski, B., Buitenhuis, ET., Le Quéré, C. 2016 The physiological response of picophytoplankton to temperature and its model representation. Front. Mar. Sci., 3, 164 (article ID).
Strain(s): 258826932886 
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Steffen, M. M., Davis, T. W., McKay, R. M. L., Bullerjahn, G. S., Krausfeldt, L. E., Stough, J. M. A., Neitzey, M. L., Gilbert, N. E., Boyer, G. L., Johengen, T. H., Gossiaux, D. C., Burtner, A. M., Palladino, D., Rowe, M. D., Dick, G. J., Meyer, K. A., Levy, S., Boone, B. E., Stumpf, R. P., Wynne, T. T., Zimba, P. V., Gutierrez, D., Wilhelm, S. W. 2017 Ecophysiological Examination of the Lake Erie Microcystis Bloom in 2014: Linkages between Biology and the Water Supply Shutdown of Toledo, OH. Environ. Sci. Technol., 51, 6745–6755.
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Steffen, M. M., Dearth, S. P., Dill, B. D., Li, Z., Larsen, K. M., Campagna, S. R., Wilhelm, S. W. 2014 Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis. ISME J., 8, 2080-2092.
Keywords: cyanobacteria; metabolomics; nitrogen; transcriptomics; transposase; urea
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DOI: 10.1038/ismej.2014.78
Steinbrenner, J. & Linden, H. 2001 Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol., 125, 810-817.
Strain(s): 144 
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Steinbrenner, J. & Linden, H. 2003 Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol. Biol., 52, 343-356.
Keywords: astaxanthin; carotenoid biosynthesis; green algae; Haematococcus pluvialis; lycopene βcyclase; redox regulation
Strain(s): 144 
PubMed: 12856941
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Steinbrenner, J. & Sandmann, G. 2006 Transformation of the green alga Haematococcus pluvialis with a phytoene desaturase for accelerated astaxanthin biosynthesis. Appl. Environ. Microbiol., 72, 7477-7484.
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Keywords: 18S rRNA; atpB; epitype; phylogeny; psaB; TEM; rbcL
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DOI: 10.11646/phytotaxa.419.1.4
Stern, R. F., Horak, A., Andrew, R. L., Coffroth, M.-A., Andersen, R. A., Küpper, F. C., Jameson, I., Hoppenrath, M., Véron, B., Kasai, F., Brand, J., James, E. R., Keeling, P. J. 2010 Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One, 5, e13991 (article ID).
Strain(s): 1367 
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Steudel, B., Hallmann, C., Lorenz, M., Abrahamczyk, S., Prinz, K., Herrfurth, C., Feussner, I., Martini, J. W., Kessler, M. 2016 Contrasting biodiversity–ecosystem functioning relationships in phylogenetic and functional diversity. New Phytol., 212, 409-420.
Keywords: algae; allelopathy; biodiversityeffects; chemical compounds; productivity; species richness
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PubMed: 27301904
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Steudel, B., Hector, A., Friedl, T., Löfke, C., Lorenz, M., Wesche, M., Kessler, M., Gessner, M. 2012 Biodiversity effects on ecosystem functioning change along environmental stress gradients. Ecol. Lett., 15, 1397-1405.
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Stockenreiter, M., Graber, A. K., Haupt, F., Stibor, H. 2012 The effect of species diversity on lipid production by micro-algal communities. J. Appl. Phycol., 24, 45-54.
Keywords: Biofuel; Complementarity; Diversity; Lipid; Micro-algae; Resource-use efficiency
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Stockenreiter, M., Haupt, F., Graber, A. K., Seppälä, J., Spilling, K., Tamminen, T., Stibor, H. 2013 Functional group richness: implications of biodiversity for light use and lipid yield in microalgae. J. Phycol., 49, 838-847.
Keywords: Algal neutral lipids; Biofuel; Diversity; Functional groups; Light use; Nile Red; PAR absorbance; Phytoplankton; Resource-use-efficiency; Species richness
Strain(s): 4282 
PubMed: 27007310
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Stough, JMA., Tang, X., Krausfeldt, LE., Steffen, MM., Gao, G., Boyer, GL., Wilhelm, SW 2017 Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events. PLoS One, 12, e0184146 (article ID).
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Su, D., Yang, L., Shi, X., Ma, X., Zhou, X., Hedges, S. B., Zhong, B. 2021 Large-scale phylogenomic analyses reveal the monophyly of bryophytes and Neoproterozoic origin of land plants. Mol. Biol. Evol., 38, 3332–3344.
Keywords: Land plants; bryophytes; phylogeny; timescale; maximum bounds
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Su, Y., Wang, J., Shi, M., Niu, X., Yu, X., Gao, L., Zhang, X., Chen, L., Zhang, W. 2014 Metabolomic and network analysis of astaxanthin-producing Haematococcus pluvialis under various stress conditions. Bioresour. Technol., 170, 522-529.
Keywords: Astaxanthin; Stress; Metabolomics; Metabolic network; Haematococcus pluvialis
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Suda, K., Tanji, K., Hori, K., Unno, H. 1999 Evidence for a novel Chlorella virus -encoded alginate lyase. FEMS Microbiol. Lett., 180, 45-53.
Keywords: Chlorella; virus; alginate lyase; lysis
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Suda, S. 2003 Light microscopy and electron microscopy of Nephroselmis spinosa sp. nov. (Prasinophyceae, Chlorophyta). J. Phycol., 39, 590-599.
Keywords: morphology; Nephroselmis spinosa; Prasinophyceae; scale morphology; taxonomy; ultrastructure
Strain(s): 934935 
DOI: 10.1046/j.1529-8817.2003.01194.x
Suda, S. & Watanabe, M. M. 1995 Life cycle of Pseudocarteria mucosa (Korschikov) Ettl (Volvocales, Chlorophyta). Phycologia, 34, 58-64.
Strain(s): 523 
DOI: 10.2216/i0031-8884-34-1-58.1
Suda, S. & Watanabe, M. M. 1995 Notes on microalgae in Japan (2). Hafniomonas montana (Geitler) Ettl et Moestrup (Chlorophyceae, Dunaliellales). Jpn. J. Phycol. (Sôrui), 43, 40-41 (in Japanese with English title).
Strain(s): 257 
Suda, S., Bhuiyan, M. A. H., Faria, D. G. 2013 Genetic diversity of Pyramimonas from Ryukyu Archipelago, Japan (Chlorophyceae, Pyramimonadales). J. Mar. Sci. Tech., 21, 285-296.
Keywords: Pyramimonas; nuclear SSU rDNA; genetic diversity; Ryukyu Archipelago
Strain(s): 221251255339233933394339633973398339934013403340534073408341134133414341634173418 
DOI: 10.6119/JMST-013-1220-16
Suda, S., Nozaki, H., Watanabe, M. M. 2005 Morphology and sexual reproduction of Carteria palmata sp. nov. belonging to the Carteria group I sensu Lembi (Chlorophyceae, Volvocales). Phycologia, 44, 596-607.
Strain(s): 133613371338 
DOI: 10.2216/0031-8884(2005)44[596:MASROC]2.0.CO;2
Suda, S., Watanabe, M. M., Inouye, I. 1989 Evidence for sexual reproduction in the primitive green alga Nephroselmis olivacea (Prasinophyceae). J. Phycol., 25, 596-600.
Strain(s): 483485 
DOI: 10.1111/j.1529-8817.1989.tb00266.x
Suda, S., Watanabe, M. M., Inouye, I. 1990 Morphological observations on the rare quadriflagellate Pseudocarteria mucosa (Chlorophyceae, Volvocales). Phycologia, 29, 54-64.
Strain(s): 522523524 
DOI: 10.2216/i0031-8884-29-1-54.1
Suda, S., Watanabe, M. M., Inouye, I. 2004 Electron microscopy of sexual reproduction in Nephroselmis olivacea (Prasinophyceae, Chlorophyta). Phycol. Res., 52, 273-283.
Keywords: electron microscopy; endoplasmic reticulum; germination; Nephroselmis olivacea; Prasinophyceae; sexual reproduction; zygote formation; zygote wall
Strain(s): 483485 
DOI: 10.1111/j.1440-183.2004.00346.x
Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595.
Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy
Strain(s): 204205207594595596610844845846847905911912913915916917918 
PubMed: 12361260
DOI: 10.1099/00207713-52-5-1577
Suda, T., Hata, T., Kawai, S., Okamura, H., Nishida, T. 2012 Treatment of tetracycline antibiotics by laccase in the presence of 1-hydroxybenzotriazole. Bioresour. Technol., 103, 498-501.
Keywords: Tetracycline antibiotics; Bacterial growth inhibition; Algal growth inhibition; Laccase; 1-Hydroxybenzotriazole
Strain(s): 35 
PubMed: 22071243
DOI: 10.1016/j.biortech.2011.10.041
Sudo, R., Tai, S., Yagi, O., Okada, M., Hosomi, M., Yamane, A. N. 1981 Comprehensive studies on the eutrophication of fresh-water areas. Determination of algal growth potential by algal assay procedure. Res. Rep. Natl. Inst. Environ. Stud., No. 26, 1-53 (in Japanese with English title).
Strain(s): 35 
Sugahara, K., Kobayashi, Y., Watanabe, M. M., Watanabe, M. 1982 Changes in cellular contents of ATP during growth of red tide algae. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 323-327 (in Japanese with English summary).
Strain(s): 6 
Sugasawa, M., Matsuzaki, R., Arakaki, Y., Nozaki, H. 2015 Morphology and phylogenetic position of a rare four-celled green alga, Pascherina tetras (Volvocales, Chlorophyceae), based on cultured material. Phycologia, 54, 342-348.
Keywords: Culture strain; Molecular phylogeny; Morphology; Multicellularity; Spondylomoraceae; Ultrastructure
Strain(s): 37493750 
DOI: 10.2216/15-27.1
Sugasawa, M., Matsuzaki, R., Kawafune, K., Takahashi, T., Kawachi, M., Krientiz, L., Nozaki, H. 2015 Taxonomic study of Pyrobotrys (Spondylomoraceae, Chlorophyceae) based on comparative morphological and molecular analyses of culture strains established using novel methods. Cytologia, 80, 513-524.
Keywords: Molecular phylogeny; Morphology; Pyrobotrys; Pyrobotrys elongata; Spondylomoraceae; Stigma; Taxonomy; Ultrastructure
Strain(s): 3768376937703771377237733774 
DOI: 10.1508/cytologia.80.513
Sugawara, K., Fujibayashi, M., Okano, K., Enda, Y., Ichinoseki, S., Taniguchi, Y., Miyata, N. 2021 Assimilation of cyanobacteria by the freshwater bivalve Nodularia douglasiae: Insights from long-term laboratory and field feeding experiments. J. Water Environ. Technol., 19, 74-84.
Keywords: filter-feeder; cyanobacterial bloom; dietary utilization; stable isotope; fatty acids
Strain(s): 44 
DOI: 10.2965/jwet.20-148
Sugaya, Y., Yasuno, M., Yanai, T. 1990 Effects of toxic Microcystis viridis and isolated toxins on goldfish. Jpn. J. Limnol., 51, 149-153.
Keywords: fish; hepatotoxin; Microcystis; hemorrhage
Strain(s): 102 
Sugihara, S., Ozaki, T., Tojo, T., Endo, H., Saito, T., Takimura, Y. 2019 Identification of novel 3-ketoacyl-acyl carrier protein synthase involved in producing medium chain fatty acids from microalgae. Bioresour. Technol. Reports, 7, 100184 (article ID).
Keywords: 3-ketoacyl ACP synthase; Medium chain fatty acid; Microalgae; Nannochloropsis
Strain(s): 2145 
DOI: 10.1016/j.biteb.2019.03.016
Sugiura, N., Iwami, N., Itayama, T., Inamori, Y. 1997 Population dynamics of grazer Monas guttula and prey Microcystis viridis using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 20, 332-337.
Keywords: disappearance process; grazer; Microcystis; microflagellate; large scale microcosm
Strain(s): 102 
Sugiyama, K., Ebisawa, M., Yamada, M., Nagashima, Y., Suzuki, H., Maoka, T., Takaichi, S. 2017 Functional lycopene cyclase (CruA) in cyanobacterium, Arthrospira platensis NIES-39, and its role in carotenoid synthesis. Plant Cell Physiol., 58, 831-838.
Keywords: Arthrospira; Carotenoid; Lycopene cyclase; crtR; cruA; β-Carotene hydroxylase
Strain(s): 39 
PubMed: 28371918
DOI: 10.1093/pcp/pcx015
Sugiyama, K., Takahashi, K., Nakazawa, K., Yamada, M., Kato, S., Shinomura, T., Nagashima, Y., Suzuki, H., Ara, T., Harada, J., Takaichi, S. 2020 Oxygenic phototrophs need ζ-carotene isomerase (Z-ISO) for carotene synthesis: Functional analysis in Arthrospira and Euglena. Plant Cell Physiol., 61, 276–282.
Keywords: Arthrospira; CarotenoidEuglena; Oxygenic phototrophs; Z-ISO; ζ-carotene isomerase
Strain(s): 39 
PubMed: 31593237
DOI: 10.1093/pcp/pcz192
Sugiyama, T., Matsumoto, C., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. VII. Ribulose-1,5-diphosphate carboxylase of Chlorella ellipsoidea. Arch. Biochem. Biophys., 129, 597-602.
Strain(s): 2170 
PubMed: 4975142
DOI: 10.1016/0003-9861(69)90219-7
Sumiya, N. 2021 Coordination mechanism of cell and cyanelle division in the glaucophyte alga Cyanophora sudae. Protoplasma, 259, 855–867.
Keywords: Cyanelle division; Glaucophyte; Cell cycle; Cyanophora
Strain(s): 764 
PubMed: 34553240
DOI: 10.1007/s00709-021-01704-3
Sumiya, N. , Hirata, A., Kawano, S. 2008 Multiple FtsZ ring formation and reduplicated chloroplast DNA in Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae) under phosphate-enriched culture. J. Phycol., 44, 1476-1489.
Keywords: chloroplast division; chloroplast DNA replication; FtsZ ring; Nannochloris bacillaris; phosphate-enriched culture
Strain(s): 4016 
DOI: 10.1111/j.1529-8817.2008.00589.x
Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID).
Keywords: chloroplast division; algal cell cycle; Cyanidioschyzon merolae; Cyanophora paradoxa
Strain(s): 5473377 
PubMed: 27837024
DOI: 10.1073/pnas.1612872113
Sumiya, N., Yamazaki, T., Owari, S., Yamamoto, M., Watanabe, K., Kawano, S. 2012 Chloroplast division and differentially regulated expression of FtsZ1 and FtsZ2 in the synchronous culture of Nannochloris bacillaris (Chlorophyta, Trebouxiophyceae). J. Phycol., 77, 59-66.
Keywords: Chloroplast division; Nannochloris bacillaris; FtsZ ring formation; FtsZ1; FtsZ2
Strain(s): 4016 
DOI: 10.1508/cytologia.77.59
Sun, B.-K., Tanji, Y., Unno, H. 2005 Influences of iron and humic acid on the growth of the cyanobacterium Anabaena circinalis. Biochem. Eng. J., 24, 195-201.
Keywords: cyanobacteria; Anabaena circinalis; iron limitation; humic acid
Strain(s): 41 
DOI: 10.1016/j.bej.2005.02.014
Sun, B.-K., Tanji, Y., Unno, H. 2006 Extinction of cells of cyanobacterium Anabaena circinalis in the presence of humic acid under illumination. Appl. Microbiol. Biotechnol., 72, 823-828.
Strain(s): 41 
PubMed: 16505991
DOI: 10.1007/s00253-006-0327-4
Sun, H., Wu, T., Chen, H Y., Ren, Y., Yang, S., Huang, J., Mou, H., Chen, F. 2021 Powerful tools for productivity improvements in microalgal production. Renew. Sust. Energ. Rev., 152, 111609 (article ID).
Keywords: Microalgal production; Productivity improvement; Kinetic model; Metabolic flux analysis; Genetic tool; Lipid biosynthesis
Strain(s): 14421402146 
DOI: 10.1016/j.rser.2021.111609
Sun, L. W., Jiang, W. J.4, Zhang, J. Y., Wang, W. Q., Du, Y., Sato, H., Kawachi, M., Yu, R. 2018 Identification and detection sensitivity of Microcystis aeruginosa from mixed and field samples using MALDI-TOF MS. Environ. Monit. Assess., 190, 712 (article ID).
Keywords: Microcystis aeruginosa; MALDI-TOFMS; Cyanobacterial bloom; Ribosomal protein
Strain(s): 2062308431639 
PubMed: 30415457
DOI: 10.1007/s10661-018-7093-5
Sun, L., Chin, W. C., Chiu, M. H., Xu, C., Lin, P., Schwehr, K. A., Quigg, A., Santschi, P. H. 2019 Sunlight induced aggregation of dissolved organic matter: Role ofproteins in linking organic carbon and nitrogen cycling in seawater. Sci. Total Environ., 654, 872-877.
Keywords: Protein; Photo-flocculation; ROS; DOM
Strain(s): 4392 
PubMed: 30453257
DOI: 10.1016/j.scitotenv.2018.11.140
Sun, L., Zhang, W., Li, B., Tan, X., Zhang, Z., Hong, W. 2022 Study on treatment of cyanobacterial bloom by UV-C/KMnO4 advanced oxidation. Environ. Resour. Ecol. J., 6, 10-15.
Keywords: UV-C/KMnO4; Advanced Oxidation; Cyanobacterial Bloom
Strain(s): 843 
DOI: 10.23977/erej.2022.060202
Sun, L.W., Jiang, W.J., Sato, H., Kawachi, M., Lu, X.W. 2016 Rapid classification and identification of Microcystis aeruginosa strains using MALDI-TOF MS and polygenetic analysis. PLoS One, 11, e0156275 (article ID).
Strain(s): 44878889901001011041051071091111124786048439011043105310581061106810691070107210761077108510941099110111041105111311151126113411351144115111571170121112131215121612171218122212241230123212331239 
PubMed: 27227555
DOI: 10.1371/journal.pone.0156275
Sun, P., Cheng, K-W., He, Y., Liu, B., Mao, X., Chen, F. 2018 Screening and identification of inhibitors of advanced glycation endproduct formation from microalgal extracts. Food Funct., 9, 1683-1691.
Strain(s): 144 
PubMed: 29473927
DOI: 10.1039/C7FO01840A
Sung, Y. J., Joun, J., Yu, B. S., Sim, S. J. 2023 Chapter 10 - Photobioreactor systems for production of astaxanthin from microalgae. In Current Developments in Biotechnology and Bioengineering. Photobioreactors : Design and Applications, Sirohi, R., Pandey, A., Sim, S., Chang, J.-S., Lee, D.-J., Elsevier pp. 229-246.
Strain(s): 144 
DOI: 10.1016/B978-0-323-99911-3.00005-1
Suradkar, A., Villanueva, C., Gaysina, LA., Casamatta, DA., Saraf, A., Dighe, G., Mergu, R., Singh, P. 2017 Nostoc thermotolerans sp. nov., a soil-dwelling species of Nostoc (Cyanobacteria). Int. J. Syst. Evol. Microbiol., 67, 1296-1305.
Keywords: cyanobacteria; Taxonomy; Nostoc
Strain(s): 2140503756 
PubMed: 28109209
DOI: 10.1099/ijsem.0.001800
Suruzzaman, M., Cao, T., Lu, J., Wang, Y., Su, M., Yang, M. 2022 Evaluation of the MIB-producing potential based on real-time qPCR in drinking water reservoirs. Environ. Res., 204, 112308 (article ID).
Keywords: 2-Methylisoborneol (MIB); Taste & odor; Real time qPCR; MIB-Synthesis (mic) gene; Drinking water
Strain(s): 5124062406342374238 
PubMed: 34757030
DOI: 10.1016/j.envres.2021.112308
Susanti, H., Yoshida, M., Nakayama, T., Nakada, T., Watanabe, M. M. 2020 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. Phytotaxa, 432, 65-80.
Keywords: Taxonomy; reassesment; Chlamydomonas meslinii; Paludistella; Algae
Strain(s): 43174318 
DOI: 10.11646/phytotaxa.432.1.6
Susilaningsih, D. 2007 Accelerating of pink pigment excretion from cyanobacterium Oscillatoria by Co-Cultivation with Anabaena. HHAYATI J. Biosci., 14, 18-22.
Keywords: Oscillatoria; Anabaena variabilis; biosurfactant; cyanobacterium; pink pigment
Strain(s): 192344422 
Suzuki, E., Tsuzuki, M., Miyachi, S. 1986 Accumlation of inorganic carbon in the cells of Euglena gracilis Z grown photoautotrophically in ordinary air. Plant Cell Physiol., 27, 1205-1208.
Keywords: Euglena gracilis Z; intracellular inorganic carbon accumulation; photosynthesis
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a077207
Suzuki, E., Tsuzuki, M., Miyachi, S. 1987 Photosynthetic characteristics of chloroplasts isolated from Euglena gracilis Z grown photoautotrophically. Plant Cell Physiol., 28, 1377-1388.
Keywords: carbon dioxide concentration; Euglena gracilis Z; isolated chloroplast; photoautotrophic growth; photosynthetic carbon fixation
Strain(s): 48 
DOI: 10.1093/oxfordjournals.pcp.a077429
Suzuki, K., Mitra, S., Iwata, O., Ishikawa, T., Kato, S., Yamada, K. 2015 Selection and characterization of Euglena anabaena var. minor as a new candidate Euglena species for industrial application. Biosci. Biotechnol. Biochem., 79, 1730-1736.
Keywords: Euglena anabaena var. minor; Euglena gracilis; paramylon
Strain(s): 483745 
PubMed: 25988946
DOI: 10.1080/09168451.2015.1045828
Suzuki, K., Miyachi, S., Tamiya, H. 1952 Changes of the capacity of dark reduction of carbon dioxide during the normal growth cycle of Chlorella ellipsoidea. In Annual Report of the Research Committee on the Application of Artificial Radioactive Isotopes in Japan, Vol. 2, Part 1, pp. 67-70.
Strain(s): 2170 
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017 Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris. J. Appl. Electrochem., 47, 197-203.
Keywords: Titanium dioxide; Photocatalyst; Anti-algal effect; Hydrogen peroxide
Strain(s): 227 
DOI: 10.1007/s10800-016-1031-4
Suzuki, R. & Fujita, Y. 1972 Studies on the Hill reaction of membrane fragments of blue-green algae II. The reaction steps inactivated at high water concentration. Plant Cell Physiol., 13, 427-436.
Strain(s): 1923 
Suzuki, S., Kataoka, T., Watanabe, T., Yamaguchi, H., Kuwata, A., Kawachi, M. 2019 Depth-dependent transcriptomic response of diatoms during spring bloom in the western subarctic Pacifc Ocean. Sci Rep, 9, 14559 (article ID).
Strain(s): 4227 
PubMed: 31601926
DOI: 10.1038/s41598-019-51150-8
Suzuki, S., Kawachi, M., Tsukakoshi, C., Nakamura, A., Hagino, K., Inouye, I., Ishida, K. 2021 Unstable relationship between Braarudosphaera bigelowii (= Chrysochromulina parkeae) and its nitrogen-fixing endosymbiont. Front. Plant Sci., 12, 749895 (article ID).
Keywords: nitrogen fixation; endosymbiosis; haptophyte; UCYN-A; reductive evolution
Strain(s): 38654442 
PubMed: 34925404
DOI: 10.3389/fpls.2021.749895
Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M. 2022 What happend before losses of photosynthesis in Cryptophyte algae? Mol. Biol. Evol., 39, msac001 (article ID).
Keywords: cryptophyte; Cryptomonas borealis: genome evolution; mixotrophy; photosynthetic loss
Strain(s): 276281345348698703715100510061327137517302331233227163952 
PubMed: 35079797
DOI: 10.1093/molbev/msac001
Suzuki, S., Ota, S., Yamagishi, T., Tuji, A., Yamaguchi, H., Kawachi, M. 2022 Rapid transcriptomic and physiological changes in the freshwater pennate diatom Mayamaea pseudoterrestris in response to copper exposure. DNA Res., 29, dsac037 (article ID).
Keywords: Mayamaea pseudoterrestris; ecotoxicological test; metal toxicity; gliding motility; oxidative stress
Strain(s): 4280 
PubMed: 36197113
DOI: 10.1093/dnares/dsac037
Suzuki, S., Tazawa, R., Miya, A., Adachi, T., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae. I. Studies on species and culture condition. CELSS J., 7, 23-28 (in Japanese with English summary).
Keywords: microalgae; Spirulina; SOT medium; culture condition; CO2/O2 gas exchange system
Strain(s): 394546 
Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 Draft genome sequences of three filamentous cyanobacterial strains, Dolichospermum planctonicum NIES-80, Planktothrix agardhii NIES-905, and Sphaerospermopsis reniformis NIES-1949. Microbiol. Resour. Ann.., 8, e00605-19 (article ID).
Strain(s): 809051949 
PubMed: 31649090
DOI: 10.1128/MRA.00605-19
Suzuki, S., Yamaguchi, H., Kawachi, M. 2019 The draft genome of a hydrogen-producing cyanobacterium, Arthrospira platensis NIES-46. J. Genomics, 7, 56-59.
Keywords: Arthrospira platensis NIES-46; filamentous cyanobacterium; genome; hydrogen production; phylogeny; Spirulina
Strain(s): 46 
PubMed: 31588248
DOI: 10.7150/jgen.38149
Suzuki, S., Yamaguchi, H., Kawachi, M. 2022 Potential genetic diversity of Synechococcus-related strains maintained in the Microbial Culture Collection of the National Institute for Environmental Studies, Japan. Microb. Resour. Syst., 38, 63-74.
Keywords: Synechococcus; Cyanobium; picoplankton; molecular marker
Strain(s): 93793893994094194294394594694794995095195295395495595695795895996096196296396496596997097197297397497597697797897998198298398498598698798813411342134313441345134613471348 
Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M. 2018 Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales. Sci Rep, 8, 8058 (article ID).
Strain(s): 35 
PubMed: 29795299
DOI: 10.1038/s41598-018-26331-6
Suzuki, T., Ezure, T., Ishida, M. 1998 In-vitro antitumour evaluation of extracts from cyanobacteria Anabaena. J. Pharm. Pharmacol., 50, 136 (Supplement).
Strain(s): 1920932094 
DOI: 10.1111/j.2042-7158.1998.tb02336.x
Suzuki, T., Imai, M., Ishida, M. 1997 Influence of environmental factors on phosphorous content in the marine microalga Dunaliella. Toxicol. Environ. Chem., 64, 173-181.
Keywords: Dunaliella; photosynthesis; polyphosphates; response surface model
Strain(s): 225422572258 
DOI: 10.1080/02772249709358547
Suzuki, T., Matsuo, T., Ohtaguchi, K., Koide, K. 1995 Gas-sparged bioreactors for CO2 fixation by Dunaliella tertiolecta. J. Chem. Tech. Biotechnol., 62, 351-358.
Strain(s): 2258 
DOI: 10.1002/jctb.280620407
Suzuki, T., Nakasato, K., Shapiro, S., Pomati, F., Neilan, B. A. 2004 Effects of synthetic local anaesthetics on the growth of the cyanobacterium Synechococcus leopoliensis. J. Appl. Phycol., 16, 145-152.
Keywords: anaesthetics; auxins; cell growth; cyanobacteria; cytokinins; phytohormones; principal component; analysis; Synechococcus leopoliensis
Strain(s): 3277 
DOI: 10.1023/B:JAPH.0000044776.04977.00
Suzuki, T., Ohtaguchi, K., Koide, K. 1993 Cell growth inhibition in mouse leukemia L5178Y cells in vitro by crude extracts from freshwater blue-green algae. J. Chem. Eng. Japan, 26, 463-464.
Strain(s): 21163277 
DOI: 10.1252/jcej.26.463
Suzuki, T., Watanabe, R., Uchida, H., Matsushima, R., Nagai, H., Yasumoto, T., Yoshimatsu, T., Sato, S., Adachi, M. 2012 LC-MS/MS analysis of novel ovatoxin isomers in several Ostreopsis strains collected in Japan. Harmful Algae, 20, 81-91.
Keywords: Novel ovatoxin isomers; Ostreopsis; Palytoxin analogues; LC-MS/MS
Strain(s): 3351 
DOI: 10.1016/j.hal.2012.08.002
Suzuki, Y., Johuchi, T., Saijo, H., Takahashi, K., Ashitani, T. 2020 Inhibition of the harmful alga Microcystis aeruginosa by sugi (Cryptomeria japonica) bark. J. Wood Sci., 66, 75 (article ID).
Keywords: Woody wastes; Extract; Algal bloom; Allelopathy; Lake environment
Strain(s): 87 
DOI: 10.1186/s10086-020-01921-z
Suzuki, Y., Saijo, H., Takahashi, K., Kofujita, H., Ashitani, T. 2018 Growth-inhibitory components in Sugi (Cryptomeria japonica) extracts active against Microcystis aeruginosa. Cogent Environ. Sci., 4, 1466401 (article ID).
Keywords: algal bloom; Japanese cedar; terpenoid; flavonoid, Cyanobacteria
Strain(s): 87 
DOI: 10.1080/23311843.2018.1466401
Szewczyk, S., Abram, M., Białek, R., Haniewicz, P., Karolczak, J., Gapiński, J., Kargul, J., Gibasiewicz, K. 2020 On the nature of uncoupled chlorophylls in the extremophilic photosystem I-light harvesting I supercomplex. Biochim. Biophys. Acta-Bioenerg., 1861, 148136 (article ID).
Keywords: Biosolar photovoltaic cells; Photosystem I; Light harvesting complex I; Uncoupled chlorophylls; Time-resolved fluorescence; Fluorescence correlation spectroscopy
Strain(s): 1332 
PubMed: 31825811
DOI: 10.1016/j.bbabio.2019.148136
Tabata, K. 1996 Cyanobacteria as teaching materials for inquiring biology [Tankyû katsudô no sozai to shite no shiano-bakuteria]. Iden, 50 (9), 58-62 (in Japanese).
Strain(s): 24 
Tachibana, H. 1984 Fundamental study on algal growth potential. Proc. Environ. Sanit. Eng. Res., 20, 53-60 (in Japanese).
Strain(s): 44 
Tachibana, H., Moriguchi, A., Inoue, T., Imaoka, T. 1986 Fundamental study on algal growth potential. II. Utilization of particulate nutrients by algae in river waters. Proc. Environ. Sanit. Eng. Res., 22, 151-161 (in Japanese).
Strain(s): 442170 
Tachiki, A., Fukuzawa, H., Miyachi, S. 1992 Characterization of carbonic anhydrase isozyme CA2, which is the CAH2 gene product, in Chlamydomonas reinhardtii. Biosci. Biotechnol. Biochem., 56, 794-798.
Strain(s): 2235 
PubMed: 1368343
DOI: 10.1271/bbb.56.794
Tada, N., Shibata, S., Otsuka, S., Namba, K., Oyaizu, H. 1999 Comparison of gene arrangements of chloroplasts between two centric diatoms, Skeletonema costatum and Odontella sinensis. DNA Seq., 10, 343-347.
Keywords: chloroplast; diatom; gene arrangement; Skeletonema costatum
Strain(s): 323 
PubMed: 10727090
DOI: 10.3109/10425179909033962
Tadama, S. & Shiraishi, H. 2017 Growth of the edible microalga Arthrospira platensis in relation to boron supply. International Journal of GEOMATE, 12, 90-95.
Keywords: Cyanobacteria; Spirulina; Arthrospira platensis; Boron, H-resorcinol
Strain(s): 39 
DOI: 10.21660/2017.30.2580
Tajima, N., Saitoh, K., Sato, S., Maruyama, F., Ichinomiya, M.,Yoshikawa, S., Kurokawa, K., Ohta, H., Tabata, S., Kuwata, A., Sato, N. 2016 Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms). Curr. Genet., 62, 887-896.
Keywords: Genome sequencing; Heterokonta; Mitochondrial genome; Parmales; Plastid genome; Triparma laevis
Strain(s): 2565 
PubMed: 27091756
DOI: 10.1007/s00294-016-0598-y
Tajima, N., Sato, S., Maruyama, F., Kurokawa, K., Ohta, H., Tabata, S., Sekine, K., Moriyama, T., Sato, N. 2014 Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum. J. Plant Res., 127, 389-397.
Keywords: Genome rearrangement; Plastid genome; Porphyridium purpureum; Rhodophyta; rRNA operon
Strain(s): 2140 
PubMed: 24595640
DOI: 10.1007/s10265-014-0627-1
Takaaraa, T., Sano, D., Konnob, H., Omura, T. 2007 Cellular proteins of Microcystis aeruginosa inhibiting coagulation with polyaluminum chloride. Water Res., 41, 1653-1658.
Keywords: Microcystis aeruginosa; Cyanobacterial proteins; Coagulation; Affinity chromatography; Polyaluminum chloride
Strain(s): 91 
PubMed: 7353025
DOI: 10.1016/j.watres.2007.01.035
Takaaraa, T., Sano, D., Masago, Y., Omura, T. 2010 Surface-retained organic matter of Microcystis aeruginosa inhibiting coagulation with polyaluminum chloride in drinking water treatment. Water Res., 44, 3781-3786.
Keywords: Microcystis aeruginosa;Surface-retained organic matter (SOM); Coagulation inhibition; Polyaluminum chloride (PACl); Lipopolysaccharide (LPS)
Strain(s): 91 
PubMed: 20570314
DOI: 10.1016/j.watres.2010.04.030
Takaara, T., Sasaki, S., Fujii, M., Ito, H., Masago, Y., Omura, T. 2019 Lectin-stimulated cellular iron uptake and toxin generation in the freshwater cyanobacterium Microcystis aeruginosa. Harmful Algae, 83, 25-33.
Keywords: Microcystis aeruginosa; Lectin; Iron uptake; Toxin production; Polysaccharide
Strain(s): 478 
PubMed: 31097253
DOI: 10.1016/j.hal.2019.01.003
Takabayashi, A., Nishimura, T., Iwamura, T. 1976 Incorporation of radioactive tracers of some labelled compounds into DNA, RNA, and protein in Chlorella cells at various stages of the cell cycle in synchronous culture. J. Gen. Appl. Microbiol., 22, 183-196.
Strain(s): 2170 
DOI: 10.2323/jgam.22.183
Takada, S., Tanaka, Y., Kumagai, K., Kobayashi, K., Hokura, A., Ogra, Y. 2022 Formation of biogenic tellurium nanorods in unicellular green alga Chlamydomonas reinhardtii. Metallomics, 14, mfac089 (article ID).
Keywords: tellurium; biogenic nanorod; Chlamydomonas reinhardtii; single-particle ICP-MS; electron microscopy; bioremediation
Strain(s): 2463 
PubMed: 36367503
DOI: 10.1093/mtomcs/mfac089
Takagi, T., Aoyama, K., Motone, K., Aburaya, S., Yamashiro, H., Miura, N., Inoue, K. 2023 Mutualistic interactions between dinoflagellates and pigmented bacteria mitigate environmental stress. Microbiol. Spectr., 11, e0246422 (article ID).
Strain(s): 4077 
PubMed: 36651852
DOI: 10.1128/spectrum.02464-22
Takahara, M., Takahashi, H., Matsunaga, S., Miyagishima, S., Takano, H., Sakai, A., Kawano, S., Kuroiwa, T. 2000 A putative mitochondrial ftsZ gene is present in the unicellular primitive red alga Cyanidioschyzon merolae. Mol. Gen. Genet., 264, 452-460.
Keywords: Cyanidioschyzon merolae; ftsZ; Mitochondrial division; Plastid division; Primitive red alga
Strain(s): 3377 
PubMed: 11129049
DOI: 10.1007/s0043800003
Takahashi, A., Shibata, N., Nishikawa, S., Ohnishi, K., Ishioka, N., Ohnishi, T. 2006 UV-B light induces an adaptive response to UV-C exposure via photoreactivation activity in Euglena gracilis. Photochem. Photobiol. Sci., 5, 467-471.
Strain(s): 48 
PubMed: 16685323
DOI: 10.1039/b601971d
Takahashi, F., Okabe, Y., Nakada, T., Sekimoto, H., Ito, M., Kataoka, H. & Nozaki, H. 2007 Origins of the secondary plastids of Euglenophyta and Chlorarachniophyta as revealed by an analysis of the plastid-targeting, nuclear-encoded gene psbO. J. Phycol., 43, 1302-1309.
Keywords: alanine-X-alanine motif; Chlorarachniophyta; Euglenophyta; phylogeny; plastids; psbO; secondary endosymbiosis; transit peptide; thylakoid-targeting domain
Strain(s): 67203254381483533624656 
DOI: 10.1111/j.1529-8817.2007.00411.x
Takahashi, K., Benico, G., Lum, W. M., Iwataki, M. 2019 Gertia stigmatica gen. et sp. nov. (Kareniaceae, Dinophyceae), a new marine unarmored dinoflagellate possessing the peridinin-type chloroplast with an eyespot. Protist, 170, 125680 (article ID).
Keywords: Chloroplast; endosymbiosis; eyespot; Gertia stigmatica; Kareniaceae; peridinin
Strain(s): 4330 
PubMed: 31563792
DOI: 10.1016/j.protis.2019.125680
Takahashi, K., Kawai-Toyooka, H., Ootsuki, R., Hamaji, T., Tsuchikane, Y., Sekimoto, H., Higashiyama, T., Nozaki, H. 2021 Three sex phenotypes in a haploid algal species give insights into the evolutionary transition to a self-compatible mating system. Evolution, 75, 2984-2993.
Keywords: Haploid species; inbreeding; life-history evolution; mating systems; reproductive isolation; sex
Strain(s): 456460541544731732872891892136213632569338233833780378240664068447944804481448244834484 
PubMed: 34250602
DOI: 10.1111/evo.14306
Takahashi, K., Moestrup, Ø., Jordan, R. W., Iwataki, M. 2015 Two new freshwater woloszynskioids Asulcocephalium miricentonis gen. et sp. nov. and Leiocephalium pseudosanguineum gen. et sp. nov. (Suessiaceae, Dinophyceae) Lacking an Apical Furrow Apparatus. Protist, 166, 638-658.
Keywords: Apical furrow; dinoflagellate; eyespot; Asulcocephalium miricentonis; Leiocephalium pseudosanguineum; Suessiaceae
Strain(s): 377537763777 
PubMed: 26599726
DOI: 10.1016/j.protis.2015.10.003
Takahashi, K., Suzuki, S., Kawai-Toyooka, H., Yamamoto, K., Hamaji, T., Ootsuki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Reorganization of the ancestral sex-determining regions during the evolution of trioecy in Pleodorina starrii. Commun. Biol., 6, 590 (article ID).
Strain(s): 13634479448044814482 
PubMed: 37296191
DOI: 10.1038/s42003-023-04949-1
Takahashi, S., Tomita, M., Nakada, T. 2018 Morphology and phylogeny of a Japanese strain of Chlamydomonas augustae (Volvocales, Chlorophyceae). J. Jpn. Bot., 93, 317-321.
Keywords: Chlamydomonas; Chloromonas; Chlorophyceae; culture strain; distribution; Japan; phylogeny; taxonomy
Strain(s): 4143 
Takahashi, T., Nishida, T., Tuji, A., Saito, C., Matsuzaki, R., Sato, M., Toyooka, K., Yasuda, H., Nozaki, H. 2016 Delineation of six species of the primitive algal genus Glaucocystis based on in situ ultrastructural characteristics. Sci. Rep., 6, 29209 (article ID).
Strain(s): 966136919612141386638673868 
PubMed: 27383831
DOI: 10.1038/srep29209
Takahashi, T., Sato, M., Toyooka, K., Matsuzaki, R., Kawafune, K., Kawamura, M., Okuda,K., Nozaki, H. 2014 Five Cyanophora (Cyanophorales, Glaucophyta) species delineated based on morphological and molecular data. J. Phycol., 50, 1058-1069.
Keywords: Cyanophora; field-emission scanning electron microscopy; freeze-fracture method; Glaucophyta; molecular phylogeny; morphology; new species; secondary structure of nuclear rDNA ITS-2; taxonomy; ultrastructure
Strain(s): 5477637643645 
PubMed: 26988787
DOI: 10.1111/jpy.12236
Takahashi, T., Sato, M., Toyooka, K., Nozaki, H. 2014 Surface ornamentation of Cyanophora paradoxa (Cyanophorales, Glaucophyta) cells as revealed by ultra-high resolution field emission scanning electron microscopy. Cytologia, 79, 119-123.
Keywords: Cyanophora paradoxa; Glaucophyta; Peripheral morphology; Field emission scanning electron microscopy; Transmission electron microscopy
Strain(s): 547 
DOI: 10.1508/cytologia.79.119
Takahashi, Y., Shimamoto, K., Toyokawa, C., Suzuki, K., Osanai, T. 2023 Gravity sedimentation of eukaryotic algae Euglena gracilis accelerated by ethanol cultivation. Appl. Microbiol. Biotechnol., 107, 3021–3032.
Keywords: Ethanol; Euglena gracilis; Microalgae; Sedimentation
Strain(s): 48 
PubMed: 36941437
DOI: 10.1007/s00253-023-12476-6
Takahashi, Y., Yoshida, M., Inouye, I., Watanabe, M. M. 2014 Diplophrys mutabilis sp. nov., a new member of Labyrinthulomycetes from freshwater habitats. Protist, 165, 50-65.
Keywords: Amphitremida; Diplophrys mutabilis; lipid body; phylogeny; ultrastructure
Strain(s): 3361 
PubMed: 24334197
DOI: 10.1016/j.protis.2013.10.001
Takaichi, S. 2011 Carotenoids in algae: distributions, biosyntheses and functions. Mar. Drugs, 9, 1101-1118.
Keywords: algal phylogeny; biosynthesis of carotenoids; distribution of carotenoids; function of carotenoids; pigment-protein complex
Strain(s): 14413323377 
PubMed: 21747749
DOI: 10.3390/md9061101
Takaichi, S., Maoka, T., Mochimaru, M. 2009 Unique carotenoids in the terrestrial cyanobacterium Nostoc commune NIES-24: 2-hydroxymyxol 2'-fucoside, nostoxanthin and canthaxanthin. Curr. Microbiol., 59, 413-419.
Strain(s): 24 
PubMed: 19669835
DOI: 10.1007/s00284-009-9453-4
Takaichi, S., Mochimaru, M., Maoka, T., Katoh, H. 2005 Myxol and 4-ketomyxol 2'-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids. Plant Cell Physiol., 46, 497-504.
Keywords: Anabaena; carotenogenesis; carotenoid; 4-ketomyxol 2'-fucoside; Nostoc
Strain(s): 210921102111 
PubMed: 15695449
DOI: 10.1093/pcp/pci049
Takaichi, S., Yokoyama, A., Mochimaru, M., Uchida, H., Murakami, A. 2016 Carotenogenesis diversification in phylogenetic lineages of Rhodophyta. J. Phycol., 52, 329-338.
Keywords: alloxanthin; antheraxanthin; carotenogenesis; carotenoid; Cryptophyta; Glaucophyta; lutein; red algae; Rhodophyta; Zeaxanthin
Strain(s): 697700705133221372138 
PubMed: 27273528
DOI: 10.1111/jpy.12411
Takaichi., S., Mochimaru, M., Maoka, T. 2006 Presense of free myxol and 4-hydroxymyxol and absense of myxol glycosides in Anabaena variabilis ATCC 29413, and proposal of a biosynthetic pathway of carotenoids. Plant Cell Physiol., 47, 211-216.
Keywords: Anabaena variabilis ATCC 29413; carotenogenesis; carotenoid; 4-hydroxymyxol; myxol
Strain(s): 2095 
PubMed: 16338959
DOI: 10.1093/pcp/pci236
Takamura, N., Kasai, F., Watanabe, M. M. 1988 Differences in the tolerant level of benthic algae to heavy metal - The effects of Cu, Cd, and Zn on the photosynthesis. Res. Rep. Natl. Inst. Environ. Stud., No. 114, 223-232 (in Japanese with English summary).
Strain(s): 71305329411412413434504531538641642662 
Takamura, N., Kasai, F., Watanabe, M. M. 1989 Effects of Cu, Cd and Zn on photosynthesis of freshwater benthic algae. J. Appl. Phycol., 1, 39-52.
Keywords: heavy metal; photosynthesis; algae; tolerance
Strain(s): 71305329407408409410411412413414416433434454461465466467479481487503504505506507509510515529530531532536537538539540620639640641642659660661662 
Takamura, N., Kasai, F., Watanabe, M. M. 1990 Unique response of Cyanophyceae to copper. J. Appl. Phycol., 2, 293-296.
Keywords: heavy metal; photosynthesis; periphyton; tolerance; Cyanophyceae; genetic adaptation
Strain(s): 433434479504505507509515530 
DOI: 10.1007/BF02180917
Takamura, Y., Yamada, T., Kimoto, A., Kanehama, N., Tanaka, T., Nakadaira, S., Yagi, O. 2004 Growth inhibiton of Microcystis cyanobacteria by L-lysine and disappearance of natural Microcystis blooms with spraying. Microbes Environ., 19, 31-39.
Keywords: Microcystis cyanobacteria; L-lysine; growth inhibition; water bloom; Euglena; Phormidium
Strain(s): 102 
DOI: 10.1264/jsme2.19.31
Takanami, R., Ozaki, H., Hayashi, S., Yamada, O., Sumino, T. 2004 Algal growth control with mud gels and silver-contained ceramics. Environ. Eng. Res., 41, 429-436 (in Japanese with English summary).
Keywords: algal bloom; mud gels; silver-contained ceramics
Strain(s): 298 
Takano, H., Tsunefuka, T., Takio, S., Ishikawa, H., Takechi, K. 2018 Visualization of plastid peptidoglycan in the charophyte alga Klebsormidium nitens using a metabolic labeling method. Cytologia, 83, 375-380.
Keywords: charophyte; Evolution; Klebsormidium nitens; Plastid peptidoglycan; Streptophyte
Strain(s): 2285 
DOI: 10.1508/cytologia.83.375
Takano, T., Higuchi, S., Ikegaya ,H., Matsuzaki, R., Kawachi, M., Takahashi, F., Nozaki, H. 2019 Identification of 13 Spirogyra species (Zygnemataceae) by traits of sexual reproduction induced under laboratory culture conditions. Sci Rep, 9, 7458 (article ID).
Strain(s): 430243034304430543064307430843094310431143124313431443154316 
PubMed: 31123266
DOI: 10.1038/s41598-019-43454-6
Takeda, F., Minamiyama, M., Okamoto, S. 2017 Seasonal variation in ability of wastewater treatment for reduction in biological effects evaluated based on algal growth. J. Water Environ. Technol., 15, 96-105.
Keywords: pollutant release and transfer register (PRTR) information; Pseudokirchneriella subcapitata; toxicity identification evaluation (TIE); wastewater treatment; whole effluent toxicity (WET)
Strain(s): 35 
DOI: 10.2965/jwet.16-051
Takeda, F., Nakano, K., Aikawa, Y., Nishimura, O., Shimada, Y., Fukuro, S., Tanaka, H., Hayashi, N. Inamori, Y. 2011 Allelopathic potential against Microcystis aeruginosa by emergent macrophytes on floating beds. J. Water Environ. Technol., 9, 371-380.
Keywords: allelopathy; Carex dispalata; floating bed; Microcystis aeruginosa; Phragmites australis; Typha domingensis
Strain(s): 87 
DOI: 10.2965/jwet.2011.371
Takeda, F., Nakano, K., Nishimura, O., Shimada, Y., Fukuro, S., Tanaka, H., Hayashi, N. Inamori, Y. 2011 Allelopathic potential Potamogeton pusillus communitya against Microcystis aeruginosa. J. Water Environ. Technol., 9, 21-28.
Keywords: allelopathy; Microcystis aeruginosa; Potamogeton pusillus
Strain(s): 87 
DOI: 10.2965/jwet.2011.21
Takeda, F., Sakamaki, T., Xu, K., Chiba, N., Nishimura, O., Sudo, R. 2003 Effect of potential allelochemicals extracted from Sargassum horneri on the growth of red tide microalgae. J. Environ. Syst. and Eng., JSCE, VII-29, 25-32.
Keywords: Sargassum horneri; red tide microalgae; growth inhibition; allelochemicals
Strain(s): 116293 
DOI: 10.2208/jscej.2003.748_25
Takeda, H. 1988 Classification of Chlorella strains by cell wall sugar composition. Phytochemistry, 27, 3823-3826.
Keywords: Chlorella ellipsoidea; C. fusca; C. kessleri; C. saccharophila; C. sorokiniana; C. vulgaris; Chlorophyta; anisotropy; cell wall sugar composition; chemotaxonomy; Ruthenium Red staining
Strain(s): 226215021602170 
DOI: 10.1016/0031-9422(88)83025-5
Takeda, H. 1991 Sugar composition of the cell wall and the taxonomy of Chlorella (Chlorophyceae). J. Phycol., 27, 224-232.
Keywords: anisotropy; cell wall sugar composition; chemotaxonomy; Chlorella; Chlorophyta; classification; glucosamine; rigid wall; ruthenium red staining
Strain(s): 21602170 
DOI: 10.1111/j.0022-3646.1991.00224.x
Takeda, H. 1993 Chemical composition of cell walls as a taxonomical marker. J. Plant Res., 106, 195-200.
Keywords: anisotropy; cell wall sugar composition; chemotaxonomy; Chlorella; classification; lytic enzyme; rigid wall; ruthenium red
Strain(s): 21602170 
DOI: 10.1007/BF02344585
Takeda, H. & Hirokawa, T. 1978 Studies on the cell wall of Chlorella. I. Quantitative changes in cell wall polysaccharides during the cell cycle of Chlorella ellipsoidea. Plant Cell Physiol., 19, 591-598.
Keywords: cell cycle; cell wall polysaccharides; Chlorella
Strain(s): 2170 
Takeda, H. & Hirokawa, T. 1979 Studies on the cell wall of Chlorella. II. Mode of increase of glucosamine in the cell wall during the synchronous growth of Chlorella ellipsoidea. Plant Cell Physiol., 20, 989-991.
Keywords: cell cycle; cell wall; Chlorella; glucosamine; synchronous culture
Strain(s): 2170 
Takeda, H. & Hirokawa, T. 1982 Studies on the cell wall of Chlorella. III. Incorporation of photosynthetically fixed carbon into cell walls of synchronously growing cells of Chlorella ellipsoidea. Plant Cell Physiol., 23, 1033-1040.
Keywords: cell cycle; cell wall polysaccharides; cell wall turnover; Chlorella ellipsoidea; photosynthesis; synchronous culture
Strain(s): 2170 
Takeda, H. & Hirokawa, T. 1983 Studies on the cell walls of Chlorella. IV. Incorporation of glucose-carbon into cell walls of synchronously growing cell of Chlorella ellipsoidea. Plant Cell Physiol., 24, 1157-1161.
Keywords: cell cycle; cell wall synthesis; Chlorella ellipsoidea; glucose uptake; synchronous culture
Strain(s): 2170 
Takeda, H. & Hirokawa, T. 1984 Studies on the cell wall of Chlorella. V. Comparison of the cell wall chemical compositions in strains of Chlorella ellipsoidea. Plant Cell Physiol., 25, 287-295.
Keywords: cell wall amino compounds; cell wall composition; cell wall polysaccharides; Chlorella cell wall; Chlorella ellipsoidea; strain identification
Strain(s): 2170 
Takeda, H. & Hirokawa, T. 1985 Cell-wall chemistry, structure and components. In Modern Methods of Plant Analysis, New Series Vol. 1, Eds. by Linskens, H. F. & Jackson, J. F., Springer-Verlag, Berlin, pp. 31-53.
Strain(s): 2170 
Takei, T., Odake, H., Miura, K., Takagi, Y. 2006 Ecotoxicity of tetradecanoic acid, 2-sulfo-, 1-metylester, sodium salt (C14MES). J. Oleo Sci., 55, 121-126.
Keywords: MES; ecotoxicity; alga; daphnia; reproduction
Strain(s): 35 
DOI: 10.5650/jos.55.121
Takenaka, S., Yoshikawa, T., Kadowaki, S., Okunishi, S., Maeda, H. 2017 Microflora in the soft Ttissue of the pacific oyster Crassostrea gigas exposed to the harmful microalga Heterosigma akashiwo. Biocontrol Science, 22, 79-87.
Keywords: Pacific oyster; Heterosigma akashiwo; Filtraion rate; Intestinal microflora
Strain(s): 5 
PubMed: 28659559
DOI: 10.4265/bio.22.79
Takeshita, T., Ivanov, I. N., Oshima, K., Ishii, K., Kawamoto, H., Ota, S., Yamazaki, T., Hirata, A., Kazama, Y., Abe, T., Hattori, M., Bišová,K., Zachleder, V., Kawano, S. 2018 Comparison of lipid productivity of Parachlorella kessleri heavy-ion beam irradiation mutant PK4 in laboratory and 150-L mass bioreactor, identification and characterization of its genetic variation. Algal Res., 35, 416-426.
Keywords: Parachlorella kessleri; Nutrient dilution; 150-L mass cultivation; Whole genome sequencing; Mutation identification; Single-nucleotide polymorphism
Strain(s): 2152 
DOI: 10.1016/j.algal.2018.09.005
Takeshita, T., Ota, S., Yamazaki, T., Hirata, A., Zachleder, V., Kawano, S. 2014 Starch and lipid accumulation in eight strains of six Chlorella species under comparatively high light intensity and aeration culture conditions. Bioresour. Technol., 158, 127-134.
Keywords: Accumulation shift; Lipid; Chlorella; Starch; Strong light
Strain(s): 215121522159216921702179 
PubMed: 24583913
DOI: 10.1016/j.biortech.2014.01.135
Takeshita, T., Takeda,K., Ota, S., Yamazaki, T., Kawano, S. 2015 A simple method for measuring the starch and lipid contents in the cell of microalgae. Cytologia, 80, 475-481.
Keywords: Chlorella; Starch; Lipid; Microplate; Trade-off
Strain(s): 2152 
DOI: 10.1508/cytologia.80.475
Takeuchi, A., Katsumata, M., Koike, T., Takata, Y., Itatsu, Y., Kusui, T. 2014 Comparison of the conventional algal growth inhibition tests using cell counting and algal bioassay using delayed fluorescence: application to industrial effluents. J. Water Environ. Technol., 12, 367-377.
Keywords: algal growth inhibition test; delayed fluorescence; rapid bioassay; whole effluent toxixity
Strain(s): 35 
DOI: 10.2965/jwet.2014.367
Takeya, M., Hirai, M. Y., Osanai, T. 2017 Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid eesidue in cyanobacteria. Sci Rep., 7, 41080 (article ID).
Strain(s): 3756 
PubMed: 28117365
DOI: 10.1038/srep41080
Takishita, K. & Uchida, A. 1999 Molecular cloning and nucleotide sequence analysis of psbA from the dinoflagellates: origin of the dinoflagellate plastid. Phycol. Res., 47, 207-216.
Keywords: D1; dinoflagellate; phylogenetic analysis; plastid; psbA
Strain(s): 12331 
DOI: 10.1046/j.1440-1835.1999.00163.x
Takishita, K., Ishida, K-I., Ishikura, M., Maruyama, T. 2005 Phylogeny of the psbC gene, coding a photosystem II component CP43, suggests separate origins for the peridinin- and fucoxanthin derivativee–containing plastids of dinoflagellates. Phycologia, 44, 26-34.
Strain(s): 218331 
DOI: 10.2216/0031-8884(2005)44[26:POTPGC]2.0.CO;2
Takishita, K., Ishida, K-I., Maruyama, T. 2003 An enigmatic GAPDH gene in the symbiotic dinoflagellate genus Symbiodinium and its related species (the Order Suessiales): possible lateral gene transfer between two eukaryotic algae, dinoflagellate and euglenophyte. Protist, 154, 443-454.
Strain(s): 613 
PubMed: 14658500
DOI: 10.1078/143446103322454176
Takishita, K., Koike, K., Maruyama, T., Ogata, T. 2002 Molecular evidence for plastid robbery (kleptoplastidy) in Dinophysis, a dinoflagellate causing diarrhetic shellfish poisoning. Protist, 153, 293-302.
Strain(s): 274715 
PubMed: 12389818
DOI: 10.1078/1434-4610-00106
Takishita, K., Kolisko, M., Komatsuzaki, H., Yubuki, N., Inagaki, Y., Cepicka, I., Smejkalová, P., Silberman, J. D., Hashimoto, T., Roger, A. J., Simpson, A. G. B. 2012 Multigene phylogenies of diverse Carpediemonas-like organisms identify the closest relatives of ‘amitochondriate’ diplomonads and retortamonads. Protist, 163, 344-355.
Keywords: Carpediemonas-like organisms; diplomonads; Excavata; hydrogenosomes; mitochondria; mitosomes
Strain(s): 1968 
PubMed: 22364773
DOI: 10.1016/j.protis.2011.12.007
Takishita, K., Yamaguchi, H., Maruyama, T., Inagaki, Y. 2009 A hypothesis for the evolution of nuclear-encoded, plastid-targeted glyceraldehyde-3 phosphate dehydrogenase genes in "chromalveolate" members. PLoS One, 4, e4737 (article ID).
Strain(s): 15275706716 
PubMed: 19270733
DOI: 10.1371/journal.pone.0004737
Takishita, K., Yubuki, N., Kakizoe, N., Inagaki, Y., Maruyama, T. 2007 Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures. Extremophiles, 11, 563–576.
Keywords: Cultivation; Diversity; Methane seep; Microbial eukaryotes; SSU rDNA
Strain(s): 1968 
PubMed: 17426921
DOI: 10.1007/s00792-007-0068-z
Tamaki, S., Koshitsuka, Y., Miyamoto, K., Ishikawa, T., Shinomura, T. 2023 Chemical and genetic carotenoid deficiency delays growth in dark-grown Euglena gracilis. Biosci. Biotechnol. Biochem., 87, 491-500.
Keywords: Euglena gracilis; carotenoid; norflurazon; dark acclimation; posttranscriptional regulation
Strain(s): 48 
PubMed: 36869792
DOI: 10.1093/bbb/zbad024
Tamamizu, K. & Kumazaki, S. 2019 Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation. Biochim. Biophys. Acta-Bioenerg., 1860, 78-88.
Keywords: Heterocystous cyanobacteria; Raman scattering microscopy; Anabaena variabilis; Rivularia; Photosystems; Thylakoid membranes
Strain(s): 20952160 
PubMed: 30414930
DOI: 10.1016/j.bbabio.2018.11.012
Tamaru, Y., Takani, Y., Yoshida, T., Sakamoto, T. 2005 Crucial role of extracellular polysaccharides in desiccation and freezing tolerance in the terrestrial cyanobacterium Nostoc commune. Appl. Environ. Microbiol., 71, 7327-7333.
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PubMed: 16269775
DOI: 10.1128/AEM.71.11.7327-7333.2005
Tamiya, H. 1951 An additional note on the kinetics of algal growth. Bot. Mag. Tokyo, 64, 216-218.
Strain(s): 2170 
Tamiya, H. 1957 Mass culture of algae. Ann. Rev. Plant Physiol., 8, 309-334.
Strain(s): 2170 
Tamiya, H. 1963 Cell differentiation in Chlorella. In Cell Differentiation: Symposium of the Society for Experimental Biology, XVII, pp. 188-214.
Strain(s): 482170 
Tamiya, H. 1963 Control of cell division in microalgae. J. Cell & Comp. Physiol., 62, 157-174.
Strain(s): 2170 
Tamiya, H. 1964 Growth and cell division of Chlorella. In Synchrony in Cell Division and Growth, Ed. by Zeuthen, E., John Wiley & Sons, New York, pp. 247-305.
Strain(s): 2170 
Tamiya, H. 1966 Synchronous cultures of algae. Ann. Rev. Plant Physiol., 17, 1-26.
Strain(s): 2170 
Tamiya, H. & Chiba, Y. 1949 Analysis of photosynthetic methanism by the method of intermittent illumination. I. Experimental part. Studies from the Tokugawa Institute, Vol.6, No.2, 1-42.
Strain(s): 2170 
Tamiya, H. & Morimura, Y. 1964 Synchronous culture of Chlorella starting from a homogeneous population. In Synchrony in Cell Division and Growth, Ed. by Zeuthen, E., John Wiley & Sons, New York, pp. 565-569.
Strain(s): 2170 
Tamiya, H., Hase, E., Shibata, K., Mitsuya, A., Iwamura, T., Nihei, T., Sasa, T. 1953 Kinetics of growth of Chlorella, with special reference to its dependence on quantity of available light and on temperature. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 204-232.
Strain(s): 2170 
Tamiya, H., Iwamura, T., Shibata, K., Hase, E., Nihei, T. 1953 Correlation between photosynthesis and light-independent metabolism in the growth of Chlorella. Biochim. Biophys. Acta, Spec. Iss. (Cell Chemistry, Festschr. for Otto Warburg) 12, 23-40.
Strain(s): 2170 
PubMed: 13115410
DOI: 10.1016/0006-3002(53)90120-6
Tamiya, H., Miyachi, S., Hirokawa, T. 1957 Some new preillumination experiments with carbon-14. In Research in Photosynthesis, Eds. by Gaffron, H. et al., Intersc. Publ. Inc., New York, pp. 213-223.
Strain(s): 2170 
Tamiya, H., Miyachi, S., Hirokawa, T., Katoh, T. 1958 Effect of some poisons upon the mechanism of photosynthesis as studied by the technique of "pre-illumination" using C14 as a tracer. In Radioisotopes in Scientific Research. Vol. 4. Research with Radioisotopes in Plant Biology and Some General Problems, Ed. by Extermann, R. C., Pergamon Press, London, pp.1-15.
Strain(s): 2170 
Tamiya, H., Morimura, Y., Yokota, M. 1962 Effects of various anti-metabolites upon the life cycle of Chlorella. Arch. Mikrobiol., 42, 4-16.
Strain(s): 2170 
DOI: 10.1007/BF00425184
Tamiya, H., Morimura, Y., Yokota, M., Kunieda, R. 1961 Mode of nuclear division in synchronous cultures of Chlorella: Comparison of various methods of synchronization. Plant Cell Physiol., 2, 383-403.
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a077694
Tamiya, H., Sasa, T., Nihei, T., Ishibashi, S. 1955 Effect of variation of day-length, day and night-temperature, and intensity of daylight upon the growth of Chlorella. J. Gen. Appl. Microbiol., 1, 298-307.
Strain(s): 2170 
DOI: 10.2323/jgam.1.298
Tamiya, H., Shibata, K., Sasa, T., Iwamura, T., Morimura, Y. 1953 Effect of diurnally intermittent illumination on the growth and some cellular characteristics of Chlorella. In Algal Culture, From Laboratory to Pilot Plant, Carnegie Institution of Washington Publication 600, The Kirby Lithographic Co., Washington D.C., pp. 78-84.
Strain(s): 2170 
Tamre, E. & Fournier, G. P. 2022 Inferred ancestry of scytonemin biosynthesis proteins in cyanobacteria indicates a response to Paleoproterozoic oxygenation. Geobiology, 20, 764–775.
Keywords: Bayesian phylogenetics; cyanobacteria; Paleoproterozoic; photoprotection; scytonemin; UVA radiation
Strain(s): 212325262672108211137564073407440754103 
PubMed: 35851984
DOI: 10.1111/gbi.12514
Tamura, I., Kagota, K., Yasuda, Y., Yoneda, S., Morita, J., Nakada, N., Kameda, Y., Kimura, K., Tatarazako, N., Yamamoto, H. 2013 Ecotoxicity and screening level ecotoxicological risk assessment of five antimicrobial agents: triclosan, triclocarban, resorcinol, phenoxyethanol and p-thymol. J. Appl. Toxicol., 33, 1222-1229
Keywords: antimicrobial agents; triclosan; triclocarban; phenoxyethanol; ecotoxicity; green algae; Ceriodaphnia dubia; ecological risk
Strain(s): 35 
PubMed: 2806922
DOI: 10.1002/jat.2771
Tamura, I., Yasuda, Y., Kagota, K., Yoneda, S., Nakada, N., Vimal Kumar, V., Yutaka Kameda, Y., Kumiko Kimura, K., Norihisa Tatarazako, N., Hiroshi Yamamoto, H. 2017 Contribution of pharmaceuticals and personal care products (PPCPs) to whole toxicity of water samples collected in effluent-dominated urban streams. Ecotox. Environ. Safe., 144, 338-350.
Keywords: PPCPs; Anionic surfactant; Whole toxicity; Bioassay
Strain(s): 35 
PubMed: 28646739
DOI: 10.1016/j.ecoenv.2017.06.032
Tan, S. & Ho, K.-K. 1989 Purification of an acidic plastocyanin from Microcystis aeruginosa. Biochim. Biophys. Acta, 973, 111-117.
Keywords: plastocyanin; cytochrome c-553; absorption chromatography; cyanobacteria; photosynthesis
Strain(s): 44 
PubMed: 2537099
DOI: 10.1016/S0005-2728(89)80410-4
Tan, X., Zhu, J., Wakisaka, M. 2021 Effect of phytochemical vanillic acid on the growth and lipid accumulation of freshwater microalga Euglena gracilis. World J. Microbiol. Biotechnol., 37, 217 (article ID).
Keywords: Euglena gracilis; Vanillic acid; Growth; Photosynthetic pigments; Biochemical composition
Strain(s): 48 
PubMed: 34773155
DOI: 10.1007/s11274-021-03185-1
Tanabe, Y. 2010 "Biological species recognition" within the toxic cyanobacterium Microcystis. IFO Res. Commun., 24, 69-79 (in Japanese with English summary).
Keywords: Microcystis; MLST; microcystin synthetase; recombination; biological species recognition
Strain(s): 2465246624672468246924702471247224732474247524762477247824792480248124822483248424852486248724882489249024912492249324942495249625422543254425452546254725482549255025512552255325542555255625572558255925602561259125922593259425952596259725982599260026012602260326042605260626072608260926102611261226132617261826192620262126222623262426252626262726282629 
Tanabe, Y. & Watanabe, M. M. 2011 Local expansion of a panmictic lineage of water bloom-forming cyanobacterium Microcystis aeruginosa. PLoS One, 6, e17085 (article ID).
Strain(s): 4487888990919899100101102103104105106107108109110111112298299478604843901105010511052105310541055105610571058105910601061106210631064106510661067106810691070107210751076107710851090109110921093109410951096109710981100110111021103110411051106110711081113111411151122112311241125112611271128112911301131113211331134113511361137113811391140114111421143114411451146114711481149115011511152115311551156115711591160116111621163116411701171117211731174117511761177117911801181118311841185118612091211121312141215121612171218121912201221122212231224122512261227122812291230123112321233123412351236123712381239124012411242124312441245125112521253125420882089209020912465246624672468246924702471247224732474247524762477247824792480248124822483248424852486248724882489249024912492249324942495249625422543254425452546254725482549255025512552255325542555255625572558255925602561259125922593259425952596259725982599260026012602260326042605260626072608260926102611261226132617261826192620262126222623262426252626262726282629 
PubMed: 21390221
DOI: 10.1371/journal.pone.0017085
Tanabe, Y.. & Yamaguchi, H. 2018b Evolutionary history of phycoerythrin pigmentation in the water bloom-forming cyanobacterium Microcystis aeruginosa. bioRXiv
Strain(s): 12114234 
DOI: 10.1101/485508
Tanabe, Y. & Yamaguchi, H. 2019 Draft genome sequence of Microcystis aeruginosa NIES-4285, isolated from brackish water (Lake Abashiri, Japan). Microbiol. Resour. Ann.., 8, e00001-19 (article ID).
Strain(s): 4285 
PubMed: 30746511
DOI: 10.1128/MRA.00001-19
Tanabe, Y., Hasebe, M., Sekimoto, H., Nishiyama, T., Kitani, M., Henschel, K., Münster, T., Theißen, G., Nozaki, H., Ito, M. 2005 Characterizaion of MADS-box genes in charophycean green alga and its implication for the evolution of MADS-box genes. Proc. Nati. Acad. Sci. U. S. A., 102, 2436-2441.
Keywords: charophyve; land plants; Chara; Coleochaete; Closterium
Strain(s): 6768 
PubMed: 15699346
DOI: 10.1073/pnas.0409860102
Tanabe, Y., Hodoki, Y., Sano, T., Tada, K., Watanabe, MM. 2018a Adaptation of the freshwater bloom-forming cyanobacterium Microcystis aeruginosa to brackish water is driven by recent horizontal transfer of sucrose genes. Front. Microbiol., 9, 1150 (article ID).
Keywords: Microcystis; bloom; salt tolerance; sucrose; genomics; brackish water; horizontal gene trasnfer; ecotype
Strain(s): 4487888990919899100101102103104105107108109112298299478604843901105010521059106310671069107010751076108510931094109811001101110211041105110611071108111311141115112211281130113111321134113911411142114311441150117011741175117611771179118111831185121112131214121512321234123812391252208820902091246524662467246824692470247124722473247524762477247824792480248124822483248424852486248724882489249024912492249424952546254725482549255025512552255325542555255625572558255925602561259225942595259625972598259926002601260226032604260526062607260826102611261226132617261826192620262126222623262426252626262826294234 
PubMed: 29922255
DOI: 10.3389/fmicb.2018.01150
Tanabe, Y., Kasai, F., Watanabe, M. M. 2007 Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa. Microbiology, 153, 3695-3703.
Strain(s): 44878889909198991001011021031041051061071081091101111122982994786048439019331050105110521053105410551056105710581059106010611062106310641065106610671068106910701072107510761077108510901091109210931094109510961097109811001101110211031104110511061107110811131114111511221123112411251126112711281129113011311132113311341135113611371138113911401141114211431144114511461147114811491150115111521153115511561157115911601161116211631164117011711172120912111213121412151216121712181219122012211222122312241225122612271228122912301231123212331234123512361237123812391240124112421243124412451251125212531254 
PubMed: 17975077
DOI: 10.1099/mic.0.2007/010645-0
Tanabe, Y., Kasai, F., Watanabe, M. M. 2009a Fine-scale spatial and temporal genetic differentiation of water bloom-forming cyanobacterium Microcystis aeruginosa: revealed by multilocus sequence typing. Environ. Microbiol. Rep., 1, 575-582.
Strain(s): 2469247024712472247324742475247624772478247924802481248224832484248524862487248824892490249124922493249424952496254625472548254925502551255225532554255525562557255825592560256125922593259426172618 
PubMed: 23765937
DOI: 10.1111/j.1758-2229.2009.00088.x
Tanabe, Y., Kaya, K., Watanabe, M. M. 2004 Evidence for recombination in the microcystin synthetase (mcy) genes of toxic cyanobacteria Microcystis spp. J. Mol. Evol., 58, 633-641.
Keywords: cyanobacteria; microcystin synthetase; Microcystis; NRPS; recombination; split decomposition
Strain(s): 888990102103107 
PubMed: 15461420
DOI: 10.1007/s00239-004-2583-1
Tanabe, Y., Sano, T., Kasai, F., Watanabe, M. M. 2009b Recombination, cryptic clades and neutral molecular divergence of the microcystin synthetase (mcy) genes of toxic cyanobacterium Microcystis aeruginosa. BMC Evol. Biol., 9, 115 (article ID).
Strain(s): 44878889909198991001011021031041051061071081091101111122982994786048439011050105110521053105410551056105710581059106010611062106310641065106610671068106910701072107510761077108510901091109210931094109510961097109811001101110211031104110511061107110811131114111511221123112411251126112711281129113011311132113311341135113611371138113911401141114211431144114511461147114811491150115111521153115511561157115911601161116211631164117011711172120912111213121412151216121712181219122012211222122312241225122612271228122912301231123212331234123512361237123812391240124112421243124412451251125212531254246524662467246924702471247224732474247524762477247824792561 
PubMed: 19463155
DOI: 10.1186/1471-2148-9-115
Tanabe, Y., Yamaguchi, H., Sano, T., Kawachi, M. 2019 A novel salt-tolerant genotype illuminates the sucrose gene evolution in freshwater bloom-forming cyanobacterium Microcystis aeruginosa. FEMS Mircobiol. Lett., 366, fnz190 (article ID).
Keywords: Microcystis; compatible solute; brackish water; sucrose
Strain(s): 4325 
PubMed: 31504438
DOI: 10.1093/femsle/fnz190
Tanaka, I., Matsuoka, S., Murata, M., Tachibana, K. 1998 A new ceramide with a novel branched-chain fatty acid isolated from the epiphytic dinoflagellate Coolia monotis. J. Nat. Prod., 61, 685-688.
Strain(s): 615 
PubMed: 9599280
DOI: 10.1021/np970554o
Tanaka, K., Kishi, M., Assaye, H., Toda, T. 2020 Low temperatures in dark period affect biomass productivity of a cyanobacterium Arthrospira platensis. Algal Res., 52, 102132 (article ID).
Keywords: Microalgae; Respiration; Temperature; Arthrospira platensis; Biomass productivity; Night biomass loss
Strain(s): 39 
DOI: 10.1016/j.algal.2020.102132
Tanaka, N., Mogi, Y., Fujiwara, T., Yabe, K., Toyama, Y., Higashiyama, T., Yoshida, Y. 2021 CZON-cutter - a CRISPR-Cas9 system for multiplexed organelle imaging in a simple unicellular alga. J. Cell Sci., 134, jcs258948 (article ID).
Keywords: CRISPR-Cas9 gene editing; Multiplexed organelle imaging; Rhodophyta; Cyanidioschyzon merolae; Organelle division; Cell cycle
Strain(s): 3377 
PubMed: 34633046
DOI: 10.1242/jcs.258948
Tanaka, S. & Nozaki, H. 1997 Notes on microalgae in Japan (3). Pteromonas angulosa (Carter) Lemmermann (Chlorophyceae, Volvocales). Jpn. J. Phycol. (Sôrui), 45, 183-184 (in Japanese with English title).
Strain(s): 738739740 
Tang, J. Y., Anderson, D. M., Au, D. W. T. 2005 Hydrogen peroxide is not the cause of fish kills associated with Chattonella marina: Cytological and physiological evidence. Aquat. Toxicol., 72, 351-360.
Keywords: Harmful algal bloom; HAB; Fish kill mechanism; Osmoregulation; Reactive oxygen species; Quantitative ultrastructure; Chattonella marina
Strain(s): 3 
PubMed: 15848254
DOI: 10.1016/j.aquatox.2005.01.007
Tang, T., Liu, X., Yuan, Y., Kiya, R., Shen, Y., Zhang, T., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikun, Y. 2022 Dual-frequency impedance assays for intracellular components in microalgal cells. Lab Chip, 22, 550-559.
Strain(s): 48 
PubMed: 35072196
DOI: 10.1039/d1lc00721a
Tang, T., Liu, X., Yuan, Y., Zhang, T., Kiya, R., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikum, Y. 2022 Impedance-based tracking of the loss of intracellular components in microalgae cells. Sens. Actuator B-Chem., 358, 131514 (article ID).
Keywords: Chloroplasts; Impedance cytometry; Interior components loss; Intracellular analysis; Single cell analysis
Strain(s): 48 
DOI: 10.1016/j.snb.2022.131514
Tang, T., Liu, X., Yuan, Y., Zhang, T., Kiya, R., Yang, Y., Suzuki, K., Tanaka, Y., Li, M., Hosokawa, Y., Yalikum, Y. 2022 Assessment of the electrical penetration of cell membranes using four-frequency impedance cytometry. Microsyst. Nanoeng., 8, 68 (article ID).
Strain(s): 48 
PubMed: 35757522
DOI: 10.1038/s41378-022-00405-y
Tang, X. M., Krausfeldt, L. E., Shao, K., LeCleir, G. R., Stough, J. M. A., Gao, G., Boyer, G. L, Zhang, Y., Paerl, H. W., Qin, B., Wilhelm, S. W. 2018 Seasonal gene expression and the ecophysiological implications of toxic Microcystis aeruginosa blooms in Lake Taihu. Environ. Sci. Technol., 52, 11049–11059.
Strain(s): 843 
PubMed: 30168717
DOI: 10.1021/acs.est.8b01066
Tani, Y. & Tsumura, H. 1989 Screening for tocopherol-producing microorganisms and α-tocopherol production by Euglena gracilis Z. Agric. Biol. Chem., 53, 305-312.
Strain(s): 48 
DOI: 10.1271/bbb1961.53.305
Tanifuji, G., Erata, M., Ishida, K-I., Onodera, N., Hara, Y. 2006 Diversity of secondary endosymbiont-derived actin-coding genes in cryptomonads and their evolutionary implications. J. Plant Res., 119, 205-215.
Keywords: Cryptomonads; Nucleomorph; Symbiotic gene reorganization; Symbiont actin gene
Strain(s): 697700701702708712765 
PubMed: 16570126
DOI: 10.1007/s10265-006-0263-5
Tanifuji, G., Onodera, N., Hara, Y. 2010 Nucleomorph genome diversity and its phylogenetic implications in cryptomonad algae. Phycol. Res., 58, 230-237.
Keywords: cryptomonads; endosymbiosis; evolution; genome reduction; nucleomorph; phylogeny
Strain(s): 274277280697699701702704708712715765 
DOI: 10.1111/j.1440-1835.2010.00580.x
Tanifuji, G., Takabayashi, S., Kume, K., Takagi, M., Nakayama, T., Kamikawa, R., Inagaki, Y., Hashimoto, T. 2018 The draft genome of Kipferlia bialata reveals reductive genome evolution in fornicate parasites. PLoS One, 13, e0194487 (article ID).
Strain(s): 1968 
PubMed: 29590215
DOI: 10.1371/journal.pone.0194487
Tanioka, Y., Miyamoto, E., Yabuta, Y., Ohnishi, K., Fujita, T., Yamaji, R., Misono, H., Shigeoka, S., Nakano, Y., Inui, H., Watanabe, F. 2010 Methyladeninylcobamide functions as the cofactor of methionine synthase in a cyanobacterium, Spirulina platensis NIES-39. FEBS Lett., 584, 3223-3226.
Keywords: adeninylcobamide; cobalamin; cyanobacteria; methionine synthase; pseudovitamine B12; Spirulina platensis
Strain(s): 39 
PubMed: 20558164
DOI: 10.1016/j.febslet.2010.06.013
Taniuchi, Y., Murakami, A., Ohki, K. 2008 Whole-cell immunocytochemical detection of nitrogenase in cyanobacteria: improved protocol for highly fluorescent cells. Aquat. Microb. Ecol., 51, 237-247.
Keywords: Diazotrophic unicellular cyanobacteria; Marine cyanobacteria; Immunocytochemical detection; Nitrogenase; Unicellular cyanobacteria
Strain(s): 3600 
DOI: 10.3354/ame01197
Tanno, A., Tokutsu, R., Arakaki, Y., Ueki, N., Minagawa, J., Yoshimura, K., Hisabori, T., Nozaki, H., Wakabayashi, K. 2021 The four-celled Volvocales green alga Tetrabaena socialis exhibits weak photobehavior and high-photoprotection ability. PLoS One, 16, e0259138 (article ID).
Strain(s): 571 
PubMed: 34699573
DOI: 10.1371/journal.pone.0259138
Tansley, C., Houghton, J., Rose, A. M. E., Witek, B., Payet, R. D., Wu, T., Miller, J. B. 2023 CIPK-B is essential for salt stress signalling in Marchantia polymorpha. New Phytol., 237, 2210-2223.
Keywords: calcineurin B-like protein; calcium signalling; CBL-interacting protein kinase; evolution; liverwort; Marchantia polymorpha; salt stres
Strain(s): 2285 
PubMed: 36660914
DOI: 10.1111/nph.18633
Tasmin, R., Shimasaki, Y., Tsuyama, M., Qiu, X., Khalil, F., Mukai, K., Khanam, M. R. M., Yamada, N., Fukuda, S., Kang, I. J., Oshima, Y. 2018 Effects of water temperature and light intensity on the acute toxicity of herbicide thiobencarb to a green alga, Raphidocelis subcapitata. Environ. Sci. Pollut. Res., 25, 25363–25370.
Keywords: Thiobencarb; Raphidocelis subcapitata; Watertemperature; Lightintensity; Photosystem II; Effectiveconcentration
Strain(s): 35 
PubMed: 29946846
DOI: 10.1007/s11356-018-2599-5
Tasmin, R., Shimasaki, Y., Tsuyama, M., qiu, X., Khalil, F., Okino, N., Yamada, N., Fukuda, S., Kang, I.-J., Oshima, Y. 2014 Elevated water temperature reduces the acute toxicity of the widely used herbicide diuron to a green alga, Pseudokirchneriella subcapitata. Environ. Sci. Pollut. Res., 21, 1064-1070.
Keywords: Diuron; Pseudokirchneriella subcapitata; Water temperature; Photosynthetic activity; Intracellular H2O2.
Strain(s): 35 
PubMed: 23872901
DOI: 10.1007/s11356-013-1989-y
Tatarazako, N., Yamamoto, K., Iwasaki, K. 2002 Subacute toxicity of wood preservatives, DDAC and BAAC, in several aquatic organisms. J. Health Sci., 48, 359-365.
Keywords: biological test; wood preservative; chronic toxicity; daphnia; green algae; fish
Strain(s): 35 
DOI: 10.1248/jhs.48.359
Tatsuzawa, H. & Takizawa, E. 1996 Fatty acid and lipid composition of the acidophilic green alga Chlamydomonas sp. J. Phycol., 32, 598-601.
Keywords: acidophilic algae; Chlamydomonas sp.; Chlamydomonas reinhardtii; Chlorophyta; culture conditions; fatty acids; lipids
Strain(s): 3284 
DOI: 10.1111/j.0022-3646.1996.00598.x
Tawfik, A., Niaz, H., Qadeer, K., Qyyum, M. A., Liu, J. J., Lee, M. 2022 Valorization of algal cells for biomass and bioenergy production from wastewater: Sustainable strategies, challenges, and techno-economic limitations. Renew. Sust. Energ. Rev., 157, 112024 (article ID).
Keywords: Xenobiotic compounds; Micro-pollutants; Enzyme activity; Biomass; Bioenergy; Algae-based wastewater treatment
Strain(s): 192344226422437216922203284 
DOI: 10.1016/j.rser.2021.112024
Temraleeva, A. D. 2018 Cyanobacterial diversity in the soils of russian dry steppes and semideserts. Microbiology, 87, 249-260.
Keywords: cyanobacteria; soils dry; steppes semideserts
Strain(s): 24 
DOI: 10.1134/S0026261718020169
Temraleeva, A. D., Moskalenko, S. V., Bachura, Y. M. 2017 Morphology, ecology, and 18S rDNA phylogeny of the green microalgal order Protosiphonales (Chlorophyceae, Chlorophyta). Microbiology, 86, 159-169.
Keywords: green microalgae; morphology; ecology; molecular phylogeny; polyphasic approach
Strain(s): 2293 
DOI: 10.1134/S0026261717020205
Temraleeva, A., Krivina, E., Boldina, O. 2022 Edaphochloris, gen. nov.: a new genus of soil green algae (Trebouxiophyceae, Chlorophyta) with simple morphology. Plant Syst. Evol., 308, 4 (article ID).
Strain(s): 4016 
DOI: 10.1007/s00606-021-01795-8
Terasaki, M. & Itabashi, Y. 2002 Free fatty acid level and galactolipase activity in a red tide flagellate Chattonella marina (Raphidophyceae). J. Oleo Sci., 51, 213-218.
Keywords: Chattonella marina; free fatty acid; galactolipase; monogalactosyldiacylglycerol
Strain(s): 3 
DOI: 10.5650/jos.51.213
Terasaki, M., Itabashi, Y., Suzuki, T., Nishimura, K. 2002 An improved method for determining the composition of FFA in red tide flagellates by RP-HPLC with fluorescence detection. J. Am. Oil Chem. Soc., 79, 1181-1186.
Keywords: 9-anthryldiazomethane; Chattonella antiqua; Chattonella marina; fluorescence detection; free fatty acid; Heterosigma akashiwo; reversed-phase HPLC
Strain(s): 13 
DOI: 10.1007/s11746-002-0624-1
Terashita, M., Maruyama, S., Tanaka, K. 2006 Cytoplasmic localization of the single glutamine synthetase in a unicellular red alga, Cyanidioschyzon merolae 10D. Biosci. Biotechnol. Biochem., 70, 2313-2315.
Keywords: Cyanidioschyzon merolae; glutamine synthetase; localization; nitrogen assimilation; red alga
Strain(s): 3377 
PubMed: 16960360
DOI: 10.1271/bbb.60174
Tezuka, M., Satou, Y., Nakamura, M. 2005 The effect of phosphorus in the fine-grained soil on the eutrophication of closed water area. J. JSCE [Doboku-kôgaku Ronbunshû], 804 (VII-37), 113-123 (in Japanese with English summary).
Keywords: eutrophication; fine-grained soil; phosphorus
Strain(s): 44 
Thakong, W., Shimizu, K., Kodato, M., Iwami, N., Whangchai, N., Itayama,T. 2020 Sequencing of 18S rRNA gene of Bdelloid rotifers and design of the primers for real-time PCR. Maejo Int. J. Energ. Environ. Commun., 1-2, 55-63.
Keywords: Rotifer; 18S rRNA gene; Specific primer; In-fusion cloning; Real-time PCR
Strain(s): 843 
Tharek, A., Jamaluddin, H., Salleh, M. M., Yahya, N. A., Kaha, M., Hara, H., Iwamoto, K., Mohamad, S. E. 2020 Astaxanthin production by tropical microalgae strains isolated from environment in Malaysia. Asian Jr. of Microbiol. Biotech. Env. Sc., 22, 168-173.
Keywords: Astaxanthin, H. pluvialis; Coelastrum sp.; Acutodesmus obliquus; High light; Nitrogen starvation; mixotrophy
Strain(s): 144 
Theriot, E. C., Ashworth, M., Ruck, E., Nakov, T., Jansen, R. K. 2010 A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research. Pl. Ecol. Evol., 143, 278-296.
Keywords: Diatoms; phylogeny; rbcL; psbC; SSU; stratigraphy
Strain(s): 461 
DOI: 10.5091/plecevo.2010.418
Thiel, T., Pratte, B. S., Zhong, J., Goodwin, L., Copeland, A., Lucas, S., Han, C., Pitluck, S., Land, M. L., Kyrpides, N. C., Woyke, T. 2014 Complete genome sequence of Anabaena variabilis ATCC 29413. Stand. Genomic Sci., 9, 562-573.
Keywords: Nitrogen Fixation; Joint Genome Institute; Heterotrophic Growth; Anabaena variabilis; Cyanobacterial Genome
Strain(s): 2095 
PubMed: 25197444
DOI: 10.4056/sigs.3899418
Tie, J., Uchigasaki, S., Haseba, T., Ohno, Y., Isahai, I., Oshida, S. 2010 Direct and rapid PCR amplification using digested tissues for the diagnosis of drowning. Electrophoresis, 31, 2411-2415.
Keywords: diagnosis; direct PCR amplification; drowning; human tissues; phytoplankton
Strain(s): 47 
PubMed: 20564264
DOI: 10.1002/elps.200900754
Tillett, D., Neilan, B. A. 2000 Xanthogenate nucleic acid isolation from cultured and environmental cyanobacteria. J. Phycol., 36, 251-258.
Keywords: cyanobacteria; DNA extraction; nucleic acids; PCR; xanthogenate
Strain(s): 81102107 
DOI: 10.1046/j.1529-8817.2000.99079.x
Tjahjono, A. E., Hayama, Y., Kakizono, T., Terada, Y., Nishio, N., Nagai, S. 1994 Hyper-accumulation of astaxanthin in a green alga Haematococcus pluvialis at elevated temperatures. Biotechnol. Lett., 16, 133-138.
Strain(s): 144 
DOI: 10.1007/BF01021659
Tjahjono, A. E., Kakizono, T., Hayama, Y., Nagai, S. 1993 Formation and regeneration of protoplast from a unicellular green alga Haematococcus pluvialis. J. Ferment. Bioeng., 75, 196-200.
Strain(s): 144 
DOI: 10.1016/0922-338X(93)90115-O
Tjahjono, A. E., Kakizono, T., Hayama, Y., Nishio, N., Nagai S. 1994 Isolation of resistant mutants against carotenoid biosynthesis inhibitors for a green alga Haematococcus pluvialis, and their hybrid formation by protoplast fusion for breeding of higher astaxanthin producers. J. Ferment. Bioeng., 77, 352-357.
Strain(s): 144 
DOI: 10.1016/0922-338X(94)90003-5
Toda, H., Yazawa, M., Yagi, K. 1992 Amino acid sequence of calmodulin from Euglena gracilis. Eur. J. Biochem., 205, 653-660.
Strain(s): 48 
DOI: 10.1111/j.1432-1033.1992.tb16824.x
Toda, K., Takano, H., Nozaki, H., Kuroiwa, T. 2001 The second serine acetyltransferase, bacterial-type O-acetylserine (thiol) lyase and eukaryotic-type O-acetylserine (thiol) lyase from the primitive red alga Cyanidioschyzon merolae. J. Plant Res., 114, 291-300.
Keywords: Cysteine synthesis; Serine acetyltransferase; O-acetylserine (thiol) lyase; Primitive red alga; Cyanidioschyzon merolae
Strain(s): 3377 
DOI: 10.1007/PL00013990
Toguri, T., Muto, S., Mihara, S., Miyachi, S. 1989 Synthesis and degradation of carbonic anhydrase in a synchronized culture of Chlamydomonas reinhardtii. Plant Cell Physiol., 30, 533-539.
Keywords: carbonic anhydrase synthesis; Chlamydomonas reinhardtii; synchronous culture
Strain(s): 2235 
DOI: 10.1093/oxfordjournals.pcp.a077772
Toguri, T., Muto, S., Miyachi, S. 1986 Biosynthesis and intracellular processing of carbonic anhydrase in Chlamydomonas reinhardtii. Eur. J. Biochem., 58, 443-450.
Strain(s): 2235 
Tohezou, Y., Iwata, T., Nakayama, E. 1999 The research on the eutrophication of the sea area. - The situation of AGP in Toyama Bay - Bull. Toyama Pref. Environ. Sci. Res. Center, 27, 39-44 (in Japanese with English summary).
Strain(s): 561 
Tokodi, N., Drobac Backović, D., Lujić, J., Šćekić, I., Simić, S., Dordević, N., Dulić, T., Miljanović, N., Marinović, Z., Savela, H., Meriluoto, J., Svirčev, Z. 2020 Protected freshwater ecosystem with incessant cyanobacterial blooming awaiting a resolution. Water, 12, 129 (article ID).
Keywords: cyanobacteria; blooms; microcystin; Lake Ludoš
Strain(s): 107 
DOI: 10.3390/w12010129
Tokodi, N., Drobac, D., Meriluoto, J., Lujić, J., Marinović, Z., Važić, T., Nybom, S., Simeunović, J., Dulić, T., Lazić, G., Petrović, T., Vuković-Gačić, B., Sunjog, K., Kolarević, S., Kračun-Kolarević, M., Subakov-Simić, G., Miljanović, B., Codd, GA., Svirčev, Z. 2018 Cyanobacterial effects in Lake Ludoš, Serbia - Is preservation of adegraded aquatic ecosystem justified? Sci. Total Environ., 635, 635,
Keywords: Wetland; Cyanobacteria; Cyanotoxin; Eutrophication; Serbia
Strain(s): 107 
PubMed: 29710560
DOI: 10.1016/j.scitotenv.2018.04.177
Tokunaga, S., Morimoto, D., Koyama, T., Kubo, Y., Shiroi, M., Ohara, K., Tokuhiro, H., Mori, Y., Nakagawa, S., Sawayama, S. 2021 Enhanced lutein production in Chlamydomonas reinhardtii by overexpression of the lycopene epsilon cyclase gene. Appl. Biochem. Biotechnol., 193, 1967–1978.
Keywords: Lutein; Lycopene epsilon cyclase; Carotenoid; Chlamydomonas reinhardtii; Transgene
Strain(s): 2237 
PubMed: 33528746
DOI: 10.1007/s12010-021-03524-w
Tokunaga, S., Sanda, S., Uraguchi, Y., Nakagawa, S., Sawayama, S. 2019 Overexpression of the DOF-type transcription factor enhances lipid synthesis in Chlorella vulgaris. Appl. Biochem. Biotechnol., 189, 116–128.
Keywords: Chlorella vulgaris; DOF transcriptional factor; Transgene; Lipid production
Strain(s): 2170 
PubMed: 30877635
DOI: 10.1007/s12010-019-02990-7
Tomaru, Y. & Kimura, K. 2020 Novel protocol for estimating viruses specifically infecting the marine planktonic diatoms. Diversity-Basel, 12, 225 (article ID).
Keywords: marine diatom; Chaetoceros tenuissimus; Chaetoceros setoensis; host-virus specificity; RdRp; ssRNA virus; ssDNA virus; viral genome
Strain(s): 371237143715 
DOI: 10.3390/d12060225
Tomaru, Y., Kimura, K., Yamaguchi, H. 2014 Temperature alters algicidal activity of DNA and RNA viruses infecting Chaetoceros tenuissimus. Aquat. Microb. Ecol., 73, 171-183.
Keywords: Diatom; CtenDNAV; CtenRNAV; Virus; Niche partitioning
Strain(s): 37163717 
DOI: 10.3354/ame01713
Tomaru, Y., Shirai, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2008 Isolation and characterization of a new single-stranded DNA virus infecting the cosmopolitan marine diatom Chaetoceros debilis. Aquat. Microb. Ecol., 50, 103-112.
Keywords: Diatom; Virus; Chaetoceros; DNA; Viral ecology
Strain(s): 37103713 
DOI: 10.3354/ame01170
Tomaru, Y., Shirai, Y., Toyoda, K., Nagasaki, K. 2011 Isolation and characterisation of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus. Aquat. Microb. Ecol., 64, 175-184.
Keywords: Bacilladnavirus; Chaetoceros; Diatom; ssDNA; Virus; Rod-shaped particle
Strain(s): 37143715 
DOI: 10.3354/ame01517
Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Koike, K., Nagasaki, K. 2011 Isolation and characterization of a single-stranded DNA virus infecting Chaetoceros lorenzianus Grunow. Appl. Environ. Microbiol., 77, 5285-5293.
Strain(s): 3711 
PubMed: 21666026
DOI: 10.1128/AEM.00202-11
Tomaru, Y., Takao, Y., Suzuki, H., Nagumo, T., Nagasaki, K. 2009 Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis. Appl. Environ. Microbiol., 75, 2375-2391.
Strain(s): 3713 
PubMed: 19233955
DOI: 10.1128/AEM.02580-08
Tomaru, Y., Toyoda, K., Kimura, K. 2018 Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805, 221-230.
Keywords: Algal viruses; Primary producers; Marine algae; Real-time quantitative PCR; Restingstage cells
Strain(s): 37143715 
DOI: 10.1007/s10750-017-3306-0
Tomaru, Y., Toyoda, K., Kimura, K., Takao, Y., Sakurada, K., Nakayama, N., Nagasaki, K. 2013 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (SS08-C03). Phycol. Res., 61, 27-36.
Keywords: Bacillarnavirus; Chaetoceros; diatom; ssRNA; virus
Strain(s): 3717 
DOI: 10.1111/j.1440-1835.2012.00670.x
Tomaru, Y., Toyoda, K., Suzuki, H., Nagumo, T., Kimura, K., Takao, Y. 2013 New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis. Sci Rep, 3, 3337 (article ID).
Strain(s): 3710371137123713 
PubMed: 24275766
DOI: 10.1038/srep03337
Tomaru, Y., Yamaguchi, H., Miki, T. 2021 Growth rate-dependent cell death of diatoms due to viral infection and their subsequent coexistence in a semi-continuous culture system. Microbes Environ., 36, ME20116 (article ID).
Keywords: diatom; population dynamics; viral infection
Strain(s): 3715 
PubMed: 33390375
DOI: 10.1264/jsme2.ME20116
Tominaga, H., Hayashida, Y., Hosoya, Y., Kurokawa, M., Sawa, Y., Ochiai, H. 1993 Characterization of a small cryptic plasmid, pPF1, from Phormidium foveolarum and vector construction. Biosci. Biotechnol. Biochem., 57, 1795-1799.
Strain(s): 32 
PubMed: 7764277
DOI: 10.1271/bbb.57.1795
Tominaga, H., Soejima, K., Kawagishi, S., Ashida, H., Sawa, Y., Ochiai, H. 1993 Structural organization of a cryptic plasmid, pMA1, from Microcystis aeruginosa f. aeruginosa Kutzing. Biosci. Biotechnol. Biochem., 57, 1503-1507.
Strain(s): 87 
PubMed: 7764220
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Tomioka, N., Nagai, T., Kawasaki, T., Imai, A., Kohata, K. 2008 Quantification of Microcystis in a eutrophic lake by simple DNA extraction and SYBR green real-time PCR. Microbes Environ., 23, 306-312.
Keywords: Microcystis; quantification; SYBR Green I; DNA extraction; eutrophic lake
Strain(s): 9899204604611843946961 
DOI: 10.1264/jsme2.ME08515
Tomita, K., Hasegawa, M., Arii, S., Tsuji, K., Bober, B., Harada, K. 2016 Characteristic oxidation behavior of b-cyclocitral from the cyanobacterium Microcystis. Environ. Sci. Pollut. Res., 23, 11998-12006.
Keywords: b-cyclocitral; Oxidation; Acidification; Cyanobacteria; Blue color formation; Lysis
Strain(s): 102 
PubMed: 26961531
DOI: 10.1007/s11356-016-6369-y
Tomita, Y., Takeya, M., Suzuki, K., Nitta, N., Higuchi, C., Marukawa-Hashimoto, Y., Osanai, T. 2019 Amino acid excretion from Euglena gracilis cells in dark and anaerobic conditions. Algal Res., 37, 169-177.
Keywords: Amino acid; Anaerobic conditions; Euglena gracilis; Fermentation; Glutamate; Glutamine; Metabolite analysis
Strain(s): 48 
DOI: 10.1016/j.algal.2018.11.017
Tomita, Y., Yoshioka, K., Iijima, H., Nakashima, A., Iwata, O., Suzuki, K., Hasunuma, T., Kondo, A., Yokota-Hirai, M., Osanai, T. 2016 Succinate and lactate production from Euglena gracilis during dark, anaerobic conditions. Front. Microbiol., 7, 2050 (article ID).
Keywords: biorefinery; Euglena; lactate; microalgae; succinate
Strain(s): 48 
PubMed: 28066371
DOI: 10.3389/fmicb.2016.02050
Tomita-Yokotani, K., Kimura, S., Ong, M., Ajioka, R., Igarashi, Y., Fujishiro, H., Katoh, H., Hashimoto, H., Mita, H., Yokobori, S., Ohmori, M. 2020 Tolerance of dried cells of a terrestrial cyanobacterium, Nostoc sp. HK-01 to temperature cycles, helium-ion beams, ultraviolet radiation (172 and 254 nm), and gamma rays: Primitive analysis for space experiments. Eco-Engineering, 32, 47-53.
Keywords: Cyanobacteria; Nostoc sp.HK-01; space; environmental tolerance
Strain(s): 2109 
DOI: 10.11450/seitaikogaku.32.47
Tong, S., Gao, K., Hutchins, D. A. 2018 Adaptive evolution in the coccolithophore Gephyrocapsa oceanica following 1,000 generations of selection under elevated CO2. Glob. Change Biol., 24, 3055-3064.
Keywords: calcification; coccolithophore; evolution; Gephyrocapsa oceanica; ocean acidification; plasticity
Strain(s): 1318 
PubMed: 29356310
DOI: 10.1111/gcb.14065
Tong, S., Hutchins, D. A., Fu, F., Gao, K. 2016 Effects of varying growth irradiance and nitrogen sources on calcification and physiological performance of the coccolithophoreGephyrocapsa oceanica grown under nitrogen limitation. Limnol. Oceanogr., 61, 2234–2242.
Strain(s): 1318 
DOI: 10.1002/lno.10371
Toume, K. & Ishibashi, M. 2002 5α, 8α-epidioxysterol sulfate from a diatom Odontella aurita. Phytochemistry, 61, 359-360.
Keywords: Odontella aurita; diatom; 5a, 8a-epidioxysterol; sulfate
Strain(s): 589 
PubMed: 12377225
DOI: 10.1016/S0031-9422(02)00224-8
Tounosu, N., Sesoko, K., Hori, K., Shimojima, M., Ohta, H. 2023 Cis‑regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens. Sci Rep, 13, 9635 (article ID).
Strain(s): 2285 
PubMed: 37322074
DOI: 10.1038/s41598-023-36500-x
Toyama, T., Hanaoka, T., Yamada, K., Suzuki, K., Tanaka, Y., Morikawa, M., Mori, K. 2019 Enhanced production of biomass and lipids by Euglena gracilis via co-culturing with a microalga growth-promoting bacterium, Emticicia sp. EG3. Biotechnol. Biofuels, 12, 205
Keywords: Biomass production; Euglena gracilis; Growth-promoting bacteria; Lipid production; Wastewater effluent
Strain(s): 48 
PubMed: 31695747
DOI: 10.1186/s13068-019-1544-2
Toyama, T., Kasuya, M., Hanaoka, T., Kobayashi, N., Tanaka, Y., Inoue, D., Sei, K., Morikawa, M., Mori, K. 2018 Growth promotion of three microalgae, Chlamydomonas reinhardtii, Chlorella vulgaris and Euglena gracilis, by in situ indigenous bacteria in wastewater efuent. Biotechnol. Biofuels, 11, 176 (article ID).
Keywords: Microalgae; Wastewater efuent; Enhanced biomass production; Microalgae growth-promoting bacteria
Strain(s): 4821722235 
PubMed: 29983739
DOI: 10.1186/s13068-018-1174-0
Toyoda, K., Gishi, M., Ihara, I. 2011 Effect of light quality and nutrients on growth of hydrocarbon-rich microalgae, Botryococcus braunii. In ISHS Acta Horticulturae 907: VI International Symposium on Light in Horticulture, pp. 255-258.
Keywords: growth rate; phosphate; nitrogen; turbidity; ATR-FTIR
Strain(s): 836 
Toyoda, K., Kimura, K., Hata, N., Nakayama, N., Nagasaki, K., Tomaru, Y. 2012 Isolation and characterization of a single-stranded DNA virus infecting the marine planktonic diatom Chaetoceros sp. (strain TG07-C28). Plankton Benthos Res., 7, 20-28.
Strain(s): 3716 
DOI: 10.3800/pbr.7.20
Toyoda, K., Nagasaki, K., Tomaru, Y. 2010 Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier. Plankton Benthos Res., 5, 56-61.
Keywords: Chaetoceros tenuissimus; detection; diatom; enumeration; TaqMan-based real-time PCR
Strain(s): 3715 
DOI: 10.3800/pbr.5.56
Toyomizu, M., Suzuki, K., Kawata, Y., Kojima, H., Akiba, Y. 2001 Effective transformation of the cyanobacterium Spirulina platensis using electroporation. J. Appl. Phycol., 13, 209-214.
Keywords: Arthrospira platensis; cyanobacterium; blue-green alga; electroporation; feed enzyme; poultry; Spirulina; transformation
Strain(s): 39 
DOI: 10.1023/A:1011182613761
Toyoshima, H., Miyata, A., Yoshida, R., Ishige, T., Takaichi, S., Kawasaki, S. 2021 Distribution of the water-soluble astaxanthin binding carotenoprotein (AstaP) in Scenedesmaceae. Mar. Drugs, 19, 349 (article ID).
Keywords: astaxanthin; Scenedesmus; Coelastrella; carotenoprotein; astaxanthin-binding protein
Strain(s): 22382540 
PubMed: 34203079
DOI: 10.3390/md19060349
Toyoshima, M. & Sato, N. 2018 Optimization of triacylglycerol and starch production in Chlamydomonas debaryana NIES-2212 with regard to light intensity and CO2 concentration. Microbiology, 164, 359-368.
Keywords: light intensity; CO2 supplement; TAG; Chlamydomonas debaryana; starch
Strain(s): 2212 
PubMed: 29458672
DOI: 10.1099/mic.0.000603
Toyoshima, M., Aikawa, S., Yamagishi, T., Kondo, A., Kawai, H. 2015 A pilot-scale floating closed culture system for the multicellular cyanobacterium Arthrospira platensis NIES-39. J. Appl. Phycol., 27, 2191-2202.
Keywords: Arthrospira (Spirulina) platensis NIES-39; Biomass productivity; Floating closed culture system; Modified seawater medium; Outdoor sulture
Strain(s): 39 
DOI: 10.1007/s10811-014-0484-2
Takahashi, K., Moestrup, Ø., Jordan, R. W., Iwataki, M. 2015 High-level accumulation of triacylglycerol and starch in photoautotrophically grown Chlamydomonas debaryana NIES-2212. Plant Cell Physiol., 56, 2447-2456.
Keywords: Biofuel; Chlamydomonas debaryana NIES-2212; Fatty acid; Starch; Triacylglycerol
Strain(s): 2212 
PubMed: 26542110
DOI: 10.1093/pcp/pcv163
Tran, H.-D., Ong, B.-N., Ngo, V.-T., Tran, D.-L., Nguyen, T.-C., Tran-Rhi, B.-H., Do, T.-T., Nguyen, T.-M.-L., Nguyen, X.-H., Melkonian, M. 2022 New angled twin–layer porous substrate photobioreactors for cultivation of Nannochloropsis oculata. Protist, 173, 125914 (article ID).
Keywords: Nannochloropsis oculata; twin-layer porous substrate photobioreactor (TL-PSBR) systems; biomass; lipid LED
Strain(s): 2145 
PubMed: 36270076
DOI: 10.1016/j.protis.2022.125914
Tsubo, Y. 1961 Chemotaxis and sexual behavior in Chlamydomonas. J. Protozool., 8, 114-121.
Strain(s): 22222578 
DOI: 10.1111/j.1550-7408.1961.tb01191.x
Tsubo, Y. 1975 Formation of colorless cells in algae. In Advance of Phycology in Japan, Eds. by Tokida, J. & Hirose, H., VEB Gustav Fischer Verlag, Jena, pp. 180-193.
Strain(s): 48 
Tsubo, Y. & Matsuda, Y. 1984 Transmission of chloroplast genes in crosses between Chlamydomonas reinhardtii diploids: Correlation with chloroplast nucleoid behavior in young zygotes. Curr. Genet., 8, 223-229.
Keywords: Chlamydomonas; tetraploid; chloroplast gene transmission; DAPI staining
Strain(s): 22352239 
PubMed: 24177743
DOI: 10.1007/BF00417820
Tsubo, Y., Ueda, T., Yokomura, E. 1971 Chloroplast autonomy revealed by nutritionally controlled Euglena gracilis. In Proceedings of the Seventh International Seaweed Symposium, University of Tokyo Press, Tokyo, p. 336-338.
Strain(s): 48 
Tsuchikane, Y., Fujii, T., Ito, M., Sekimoto, H. 2005 A sex pheromone, protoplast release-inducing protein (PR-IP) inducer, induces sexual cell division and production of PR-IP in Closterium. Plant Cell Physiol., 46, 1472-1476.
Keywords: Closterium; conjugation; pheromone; sexual cell division; sexual reproduction
Strain(s): 6768 
PubMed: 15970600
DOI: 10.1093/pcp/pci158
Tsuchikane, Y., Fukumoto, R., Akatsuka, S. Fujii, T., Sekimoto, H. 2003 Sex pheromones that induce sexual cell division in the Closterium peracerosum-strigosum-littorale complex (Charophyta). J. Phycol., 39, 303-309.
Keywords: Closterium; conjugation; gametangial cell; pheromone; sexual cell division; sexual reproduction
Strain(s): 6768 
DOI: 10.1046/j.1529-8817.2003.02062.x
Tsuchikane, Y., Hamaji, T., Ota, K., Kato, S. 2018 Establishment of a clonal culture of unicellular conjugating algae. J. Vis. Exp., 14, e57761 (article ID).
Strain(s): 4321 
PubMed: 30059030
DOI: 10.3791/57761
Tsuchikane, Y., Ito, M., Sekimoto, H. 2008 Reproductive isolation by sex pheromones in the Closterium peracerosum-strigosum-littorale complex (Zygnematales, Charophyceae). J. Phycol., 44, 1197-1203.
Keywords: Closterium; conjugation; pheromone; reproductive isolation; sexual reproduction
Strain(s): 53545859646567686970229261 
PubMed: 27041716
DOI: 10.1111/j.1529-8817.2008.00577.x
Tsuchikane, Y., Kobayashi, H., Kato, M., Watanabe, J., Wu, J. T., Sekimoto, H. 2018 Identification of a new mating group and reproductive isolation in the Closterium peracerosum–strigosum–littorale complex. J. Plant Res., 131, 735–746.
Keywords: Alga; Closterium; Mating group; Reproductive isolation; Sex pheromone; Speciation
Strain(s): 535455646566676826126243194320 
PubMed: 29948484
DOI: 10.1007/s10265-018-1043-8
Tsuchikane, Y., Kokubun, Y., Sekimoto, H. 2010 Characterization and molecular cloning of conjugation-regulating sex pheromones in homothallic Closterium. Plant Cell Physiol., 51, 1515-1523.
Keywords: Closterium; Conjugation; Homothallic; Homothallism; Sex pheromone; Sexual reproduction; Zygospore
Strain(s): 2666 
PubMed: 20656896
DOI: 10.1093/pcp/pcq110
Tsuchikane, Y., Nakai, A., Sekimoto, H. 2014 Detailed analyses on the parthenospore formation in Closterium moniliferum (Zygnematophyceae, Charophyta). Phycologia, 53, 571-578.
Keywords: Closteriu; Conjugation; Parthenospore; Pheromone; Sexual reproduction
Strain(s): 3646 
DOI: 10.2216/14-35R1.1
Tsuchikane, Y., Sato, M., Ootaki, T., Kokubun, Y., Nozaki, H., Ito, M., Sekimoto, H. 2010 Sexual prosesses and phylogenetic relationship of a homothallic strain in the Closterium peracerosum-strigosum-littorale complex (Zygnematales, Charophyceae). J. Phycol., 46, 278-284.
Keywords: Closterium; conjugation; heterothallic; pheromone; sexual reproduction
Strain(s): 2666 
DOI: 10.1111/j.1529-8817.2010.00806.
Tsuchikane, Y., Sekimoto, H. 2019 The genus Closterium, a new model organism to study sexual reproduction in streptophytes. New Phytol., 221, 99-104.
Keywords: charophycean; Closterium; landplants; mating-type; sexual reproduction
Strain(s): 6769 
PubMed: 29992575
DOI: 10.1111/nph.15334
Tsuchikane, Y., Tsuchiya, M., Hindák, F., Nozaki, H., Sekimoto, H. 2012 Zygospore formation between homothallic and heterothallic strains of Closterium. Sex. Plant Reprod., 25, 1-9.
Keywords: Closterium; Conjugation; Homotallism; Heterothallism: Dexual reproduction; Zygospore
Strain(s): 5859606162636465676869702612666 
PubMed: 21858438
DOI: 10.1007/s00497-011-0174-z
Tsuchikane, Y., Tsuchiya, M., Kokubun, Y., Abe, J., Sekimoto, H. 2011 Conjugation processes of Penium margaritaceum (Zygnemophyceae, Charophyta). Phycol. Res., 59, 74-82.
Keywords: conjugation; homothallic; homothallism; Penium; selfing conjugation; sexual reproduction; zygospore
Strain(s): 2667 
DOI: 10.1111/j.1440-1835.2010.00602.x
Tsuchiya, M. & Nomaki, H. 2021 Rapid response of the giant protist xenophyophores (Foraminifera, Rhizaria) to organic matter supply at abyssal depths revealed by an in situ dual stable isotope labeling experiment. Deep-Sea Research, 176, 103608 (article ID).
Keywords: Xenophyophore; In situ isotope labeling experiment; Abyssal plain; Feeding habit
Strain(s): 1383 
DOI: 10.1016/j.dsr.2021.103608
Tsuchiya, Y., Watanabe, M. F., Watanabe, M. 1992 Volatile organic sulfur compounds associated with blue-green algae from inland waters of Japan. Wat. Sci. Tech., 25, 123-130.
Keywords: blue-green algae; Microcystis aeruginosa; M. wesenbergii; isopropyl mercaptan; isopropyl disulfide; isopropyl sulfonyl chloride; chlorination; mutagenicity; Ames test
Strain(s): 881061108010811083109811041137 
DOI: 10.2166/wst.1992.0043
Tsuda, K., Takamura, N., Matsuyama, M., Fujii, Y. 2005 Assessment method for leaf litters allelopathic effect on cyanobacteria. J. Aquat. Plant Manage, 43, 43-46.
Keywords: allelopathy; bioassay; leaf disk; Microcystis aeruginosa
Strain(s): 88 
Tsuji, N., Hirooka, T., Nagase, H., Hirata, K., Miyamoto, K. 2003 Photosynthesis-dependent removal of 2,4-dichlorophenol by Chlorella fusca var. vacuolata. Biotechnol. Lett., 25, 241-244.
Keywords: 2,4-dichlorophenol; bioremediation; Chlorella fusca var. vacuolata; green algae; photosyntheis
Strain(s): 422437 
PubMed: 12882578
DOI: 10.1023/A:1022333406
Tsuji, T. & Fujita, Y. 1971 Ascorbate photo-oxidation by a photochemically active chromo-protein isolated from the blue-green alga Anabaena cylindrica: the effect of mono-chromatic illumination. Plant Cell Physiol., 12, 807-811.
Strain(s): 19 
Tsuji, T. & Fujita, Y. 1972 Electron donor-specificity observed in photosystem I reactions of membrane fragments of the blue-green alga Anabaena variabilis and the higher plant Spinacea oleracea. Plant Cell Physiol., 13, 93-99.
Strain(s): 23 
Tsuji, Y., Suzuki, I., Shiraiwa, Y. 2009 Photosynthetic carbon assimilation in the coccolithophorid Emiliania huxleyi (Haptophyta): Evidence for the predominant Operation of the C 3 cycle and the Contribution of β-carboxylases to the active anaplerotic reaction. Plant Cell Physiol., 50, 318-329.
Strain(s): 837 
PubMed: 19109302
DOI: 10.1093/pcp/pcn200
Tsuji, Y., Suzuki, I., Shiraiwa, Y. 2012 Enzymological evidence for the function of a plastid-located pyruvate carboxylase in the Haptophyte alga Emiliania huxleyi: a novel pathway for the production of C 4 compounds. Plant Cell Physiol., 53, 1043-1052.
Strain(s): 837 
PubMed: 22492231
DOI: 10.1093/pcp/pcs045
Tsuji, Y., Yamazaki, M., Suzuki, I., Shiraiwa, Y. 2015 Quantitative analysis of carbon flow into photosynthetic products functioning as carbon storage in the marine coccolithophore, Emiliania huxleyi. Mar. Biotechnol., 17, 428-440.
Keywords: Alkenones; Carbon partitioning; Carbon storage compound; Emiliania huxleyi; Haptophyte; Lipid; biosynthesis
Strain(s): 837 
PubMed: 14730424
DOI: 10.1007/s10126-002-0081-2
Tsukada, S., Ehara, T., Sumida, S., Osafune, T., Hase, E. 1986 Behaviour of proplastids and their nucleoids in dark-organotrophically grown cells of Euglena gracilis transferred to an inorganic medium. Br. Phycol. J., 21, 155-163.
Strain(s): 48 
DOI: 10.1080/00071618600650181
Tsukui, T. & Yamazaki, M. 1992 Studies on eutrophication in rivers (II). Determination of AGP in the Kanda River System. Tokyo-to Kankyô Kagaku Kenkyûjo Nenpô 1992, 162-166 (in Japanese with English Summary).
Strain(s): 35 
Tsuruta, K., Yoshida, Y., Kusumoto, N., Sekine, N., Ashitani, T., Takahashi, K. 2011 Inhibition activity of essential oils obtained from Japanese trees against Skeletonema costatum. J. Wood Sci., 57, 520-525.
Keywords: Essential oil; Inhibition activity; Red tide plankton; · Skeletonema costatum; Woody waste
Strain(s): 16 
DOI: 10.1007/s10086-011-1209-7
Tsusue, Y. & Fujita, Y. 1964 Mono- and oligo-saccharides in the blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 10, 283-294.
Strain(s): 37 
Tsuzuki, M. 1983 Mode of HCO3-utilization by the cells of Chlamydomonas reinhardtii grown under ordinary air. Z. Pflanzenphysiol., 110, 29-37.
Strain(s): 216021702235 
Tsuzuki, M. 1986 Transport and fixation of inorganic carbon in the cells of Chlorella vulgaris 11h grown under ordinary air. Plant Cell Physiol., 27, 1233-1240.
Keywords: carbon dioxide; carbonic anhydrase; Chlorella vulgaris; inorganic carbon; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a077220
Tsuzuki, M. & Miyachi, S. 1979 Effects of CO2 concentration during growth and of ethoxyzolamide on CO2 compensation point in Chlorella. FEBS Lett., 103, 221-223.
Strain(s): 2160 
Tsuzuki, M. & Miyachi, S. 1989 The function of carbonic anhydrase in aquatic photosynthesis. Aquatic Botany, 34, 85-104.
Strain(s): 20932138216021732235 
DOI: 10.1016/0304-3770(89)90051-X
Tsuzuki, M., Miyachi, S., Berry, J. A. 1985 Intercellular accumulation of inortanic carbon and its active species taken up by Chlorella vulgaris 11h. In Inorganic Carbon Uptake by Aquatic Photosynthetic Organisms, Eds. by Lucas, W. J. & Berry, J. A., American Society of Plant Physiologists, Rockville, Md, pp. 53-66.
Strain(s): 2160 
Tsuzuki, M., Muto, S., Miyachi, S. 1981 Role of carbonic anhydrase in photosynthesis of higher plants: A possible limiting step in CO2 transport. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, pp. 483-492.
Strain(s): 2160 
Tsuzuki, M., Ohnuma, E., Sato, N., Takaku, T., Kawaguchi, A. 1990 Effects of CO2 concentration during growth on fatty acid composition in microalgae. Plant Physiol., 93, 851-856.
Strain(s): 482093213821602235 
PubMed: 1666759
DOI: 10.1104/pp.93.3.851
Tsuzuki, M., Okada, K., Isoda, H., Hirano, M., Odaka, T., Saijo, H., Aruga, R., Miyauchi, H., Fujiwara, S. 2019 Physiological properties of photoautotrophic microalgae and cyanobacteria relevant to industrial biomass production. Mar. Biotechnol., 21, 406-415.
Keywords: Algae; Biomass; Chlorella; Culture system; Cyanobacteria; Photosynthesis
Strain(s): 2160 
PubMed: 30927152
DOI: 10.1007/s10126-019-09890-1
Tsuzuki, M., Shimamoto, T., Yang, S. Y., Miyachi, S. 1984 Diversity in intracellular locality, nature, and function of carbonic anhydrase in verious plants. Ann. NY Acad. Sci., 429, 238-240.
Strain(s): 6872160216121622170217322352280 
DOI: 10.1111/j.1749-6632.1984.tb12341.x
Tsuzuki, M., Shiraiwa, Y., Miyachi, S. 1980 Role of carbonic anhydrase in photosynthesis in Chlorella derived from kinetic analysis of 14CO2 fixation. Plant Cell Physiol., 21, 677-688.
Keywords: carbonic anhydrase; Chlorella; CO2 fixation; kinetic analysis; photosynthesis
Strain(s): 2160 
DOI: 10.1093/oxfordjournals.pcp.a076042
Tuji, A. & Niiyama, Y. 2010 Phylogenetic study by the morphological and molecular analyses of Japanese planktonic Anabaena species. Bull. Natl. Mus. Nat. Sci., Ser. B, 36, 71-80.
Keywords: Anabaena; Anabaena oumiana; culture, Japan, morphology, planktonic; rbcL; rbcX; rDNA; Sphaerospermum oumianum (M. Watanabe) Tuji et Niiyama comb. nov.
Strain(s): 807808820822826163916421643164616511652165316571658166516671668167216731674167716781683169016931694169616971875187818801884188718911894189519041909192019211922192919311934193919421950 
Tuji, A. & Niiyama, Y. 2016 The identity and phylogeny of Pseudanabaena Strain, NIES-512, producing 2-methylisoborneol (2-MIB). Bull. Natl. Mus. Nat. Sci., Ser. B, 42, 83-89.
Keywords: 2-MIB; Pseudanabaena foetida var. intermedia; Pseudanabaena foetida var. subfoetida; secondary structure
Strain(s): 5124059 
Tuji, A. & Niiyama, Y. 2018 Two new Pseudanabaena (Cyanobacteria, Synechococcales) species from Japan, Pseudanabaena cinerea and Pseudanabaena yagii, which produce 2-methylisoborneol. Phycol. Res., 66, 291-299.
Keywords: internal transcribed spacer region; Phormidiumtenue; Pseudanabaena foetida; Pseudanabaena subfoetida; rRNA operon; secondary structure
Strain(s): 5124059406240634064406542374238 
DOI: 10.1111/pre.12327
Tuji, A., Nakagawa, M., Sato, M., Yamaguchi, H. 2018 A new planktonic diatom, Craticula pseudocitrus sp. nov., Naviculales, Bacillariophyceae found in Lake Kasumigaura, Japan. Bull. Natl. Mus. Nat. Sci., Ser. B, 44, 15-22.
Keywords: Craticula citrus; Craticula pseudocitrus sp. nov.; Lake Kasumigaure; Navicula citrus
Strain(s): 4015 
Tuji, A., Niiyama, Y., Ichise, S. 2023 Distribution and phylogeny of Dolichospermum hangangense (Nostcales, Cyanobacteria) found in Japanese lakes and reservoirs. Bull. Natl. Mus. Nat. Sci., Ser. B, 49, 83-95.
Keywords: Dolichospermum circinale; Dolichospermum hangangense; distribution; phylogeny, Japan
Strain(s): 808088118208228231650165116801682168318771908 
Tuji, A., Ogiso-Tanaka, E., Yamaguchi, H. 2024 Complete genome sequence of Annamia dubia, filamentous colony-making Chroococcales with the analysis of FraC gene influencing filament integrity. J. Genomics, 12,
Strain(s): 4383 
PubMed: 38164507
DOI: 10.7150/jgen.87678
Tuji, A., Suzuki, S., Yamagishi, T., Yamaguchi, H. 2021 Alternative diatom strains for growth inhibition tests (OECD Test Guideline 201). Bull. Natl. Mus. Nat. Sci., Ser. B, 47, 183–192.
Keywords: Fistulifera; Mayamaea permitis; Mayamaea pseudoterrestris sp., nov.; Mayamaea terrestris; Navicula pelliculosa; UTEX 664
Strain(s): 42804281 
DOI: 10.50826/bnmnsbot.47.4_183
Tuji, A., Yamaguchi, H., Kataoka, T., Sato, M., Sano, T., Niiyama, Y. 2021 Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria). Fottea, 21, 100-109.
Strain(s): 4383 
DOI: 10.5507/fot.2021.003
Turmel, M., Ehara, M., Otis, C., Lemieux, C. 2002a Phylogenetic relationships among streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences. J. Phycol., 38, 364-375.
Keywords: Charophyceae; chloroplast rRNA genes; introns; land plants; phylogeny; Streptophyta
Strain(s): 296484 
DOI: 10.1046/j.1529-8817.2002.01163.x
Turmel, M., Lemieux, C., Burger, G., Lang, B. F., Otis, C., Plante, I., Gray, M. W. 1999a The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae. Plant Cell, 11, 1717-1729.
Strain(s): 484 
PubMed: 10488238
DOI: 10.1105/tpc.11.91717
Turmel, M., Lopes Dos Santos, A., Otis, C., Sergerie, R., Lemieux, C. 2019 Tracing the evolution of the plastome and mitogenome in the Chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biol. Evol., 11, 1275–1292.
Keywords: prasinophyte green algae; Picocystis salinarum; chloroplast genome; mitochondrial genome; phylogenomic analyses; AUA codon reassignment
Strain(s): 27552758366938353849 
PubMed: 30937436
DOI: 10.1093/gbe/evz074
Turmel, M., Otis, C., Lemieux, C. 1999b The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes. Proc. Nati. Acad. Sci. U. S. A., 96, 10248-10253.
Strain(s): 484 
PubMed: 10468594
DOI: 10.1073/pnas.96.18.10248
Turmel, M., Otis, C., Lemieux, C. 2002b The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants. Mol. Biol. Evol., 19, 24-38.
Keywords: green aglae; Mesostigma viride;mitochondrial DNA; group I introns; group II introns; trans-splicing
Strain(s): 296 
PubMed: 11752187
DOI: 10.1093/oxfordjournals.molbev.a003979
Turmel, M., Otis, C., Lemieux, C. 2015 Dynamic evolution of the chloroplast genome in the Green algal classes Pedinophyceae and Trebouxiophyceae. Genome Biol. Evol., 7, 2062-2082.
Keywords: Trebouxiophyceae; Pedinophyceae; plastid genomics, genome; rearrangements; inverted repeat; horizontal transfer; repeats; introns
Strain(s): 1824 
PubMed: 26139832
DOI: 10.1093/gbe/evv130
Turmel, M., Otis, C., Lemieux, C. 2020 Complete mitogenome of the chlorophyte green alga Marsupiomonas sp. NIES 1824 (Pedinophyceae). Mitochondrial DNA Part B-Resour. 5, 548-550.
Keywords: Chlorophyta; variant genetic code; fragmented rnl gene; Pedinophyceae; phylogenomics
Strain(s): 1824 
DOI: 10.1080/23802359.2019.1710283
Ubekôsan Co. Ltd. 1988 Effects of UR-158 on the algal mortality [UR-158 no sassôkôka]. Unpublished report in Ubekôsan Co. Ltd, 3 pp. (in Japanese).
Strain(s): 32227 
Uchida, A., Nagasaki, K., Hiroishi, S., Ishida, Y. 1989 The application of monoclonal antibodies to an identification of Chattonella marina and Chattonella antiqua. Bull. Jpn. Soc. Sci. Fish., 55, 721-725.
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Uchida, H., Kitae, K., Tomizawa, K., Yokota, A. 1998 Comparison of the nucleotide sequence and secondary structure of the 5.8S ribosomal RNA gene of Chlamydomonas tetragama with those of green algae. DNA Seq., 8, 403-408.
Keywords: 5.8S ribosomal RNA gene; Chlamydomonas
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PubMed: 10728826
DOI: 10.3109/10425179809020902
Ueda, H., Otsuka, S., Senoo, K. 2009 Community composition of bacteria co-cultivated with microalgae in non-axenic algal cultures. Microbiol. Cult. Coll., 25, 21-25.
Keywords: algal-bacterial association; bacteria; community composition; culture collection; microalgae
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Ueda, H., Otsuka, S., Senoo, K. 2010 Bacterial communities constructed in artificial consortia of bacteria and Chlorella vulgaris. Microbes Environ., 25, 36-40.
Keywords: Chlorella vulgaris; algal-bacterial association; bacteria; co-cultivation; consortium
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PubMed: 21576850
DOI: 10.1264/jsme2.ME09177
Ueda, K. & Nonaka, M. 1992 Division of chloroplasts in a green alga, Pediastrum duplex. Ann. Bot., 69, 113-118.
Keywords: cell wall; chloroplast division; freeze-substitution; intermediate fibres; Pediastrum duplex; transmission electron microscopy
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DOI: 10.1093/oxfordjournals.aob.a088315
Ueki, N., Matsunaga, S., Inouye, I., Hallmann, A. 2010 How 5000 independent rowers coordinate their strokes in order to row into the sunlight: Phototaxis in the multicellular green alga Volvox. BMC Biol., 8, 103 (article ID).
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PubMed: 20663212
DOI: 10.1186/1741-7007-8-103
Ueki, N., Wakabayashi, K. 2018 Detergent-extracted Volvox model exhibits an anterior–posterior gradient in flagellar Ca2+ sensitivity. Proc. Natl. Acad. Sci. U. S. A., 115, E1061-E1068 (article ID).
Keywords: flagella; calcium; phototaxis; Volvox
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PubMed: 29311312
DOI: 10.1073/pnas.1715489115
Ukai, Y., Fujita, Y., Morimura, Y., Watanabe, A. 1958 Studies on growth of blue green alga Tolypothrix tenuis. J. Gen. Appl. Microbiol., 4, 163-169.
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Umetani, I., Kunugi, M., Yokono, M., Takabayashi, A., Tanaka, A. 2018 Evidence of the supercomplex organization of photosystem II and light-harvesting complexes in Nannochloropsis granulata. Photosynth. Res., 136, 49-61.
Keywords: Light-harvesting complex; Photosystem II; Nannochloropsis; CN–PAGE
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PubMed: 28856533
DOI: 10.1007/s11120-017-0438-z
Umetsu, S., Kanda, M., Imai, I., Sakai, R., Fujita, M. J. 2019 Questiomycins, algicidal compounds produced by the marine bacterium Alteromonas sp. D and their production cue. Molecules, 24, 4522 (article ID).
Keywords: Alteromonas; Chattonella antiqua; algicidal bacteria; harmful algal bloom; phenoxazinone antibiotics; questiomycins; red tide
Strain(s): 1 
PubMed: 31835604
DOI: 10.3390/molecules24244522
Unno, K., Ando, I., Hagima, N., Yokogaki, S. 1992 Growth delay and intracellular changes in Chlorella ellipsoidea C-27 as a result of deuteration. Plant Cell Physiol., 33, 963-969.
Keywords: Chlorella ellipsoidea; deuterium oxide; growth delay; isotope effect; ultrastractural changes
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a078348
Urrejola, C., Alcorta, J., Salas, L., Vásquez, M., Polz, M. F., Vicuña, R., Díez, B. 2019 Genomic features for desiccation yolerance and sugar biosynthesis in the extremophile Gloeocapsopsis sp. UTEX B3054. Front. Microbiol., 10, 950 (article ID).
Keywords: Atacama Desert; compatible solutes; cyanobacteria; desiccation tolerance; DNA extraction; exopolysaccharide; glycosyltransferase; trehalose
Strain(s): 1031 
PubMed: 31134010
DOI: 10.3389/fmicb.2019.00950
Utsunomiya, A., Watanuki, T., Matsushita, K., Nishina, M., Tomita, I 1997 Assessment of the toxicity of linear alkylbenzene sulfonate and quaternary alkylammonium chloride by measuring 13C-glycerol in Dunaliella sp. Chemosphere, 35, 2479-2490.
Keywords: Surfactant; Toxicity; LAS; Quaternary ammonium chloride; Glycerol; 13C-glycerol; Dunaliella sp; 13C-NMR; EC50-24h
Strain(s): 3744 
DOI: 10.1016/S0045-6535(97)00316-0
Utsunomiya, A., Watanuki, T., Matsushita, K., Tomita, I 1997 Toxic effects of linear alkylbenzene sulfonate, quaternaryalkylammonium chloride and their complexes on Dunaliella sp. and Chlorella pyrenoidosa. Environ. Toxicol. Chem., 16, 1247-1254.
Keywords: Linear alkylbenzene sulfonate; Cationic surfactant; Complex Dunaliella Chlorella
Strain(s): 3744 
DOI: 10.1002/etc.5620160621
Uye, S. & Takamatsu, K. 1990 Feeding inter-actions between planktonic copepods and red-tide flagellates from Japanese coastal waters. Mar. Ecol. Prog. Ser., 59, 97-107.
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Valadez-Cano, C., Hawkes, K., Calvaruso, R., Reyes-Prieto, A., Lawrence, J. 2022 Amplicon-based and metagenomic approaches provide insights into toxigenic potential in understudied Atlantic Canadian lakes Facets, 7, 194-214.
Keywords: Toxic cyanobacteria; toxic blooms, cyanotoxins; microcystin; Microcystis aeruginosa; bioactive metabolites
Strain(s): 8432549 
DOI: 10.1139/facets-2021-0109
Van Wichelen, J., D'hondt, S., Claeys, M., Vyverman, W., Berney, C., Bass, D., Vanormelingen, P. 2016 A hotspot of amoebae diversity: 8 new naked amoebae associated with the planktonic bloom-forming cyanobacterium Microcystis. Acta Protozool., 55, 61-87.
Keywords: Naked amoebae; Microcystis; morphology; 18S rDNA; harmful algal blooms; grazing; Europe
Strain(s): 37223723372537263729373037663767 
DOI: 10.4467/16890027AP.16.007.4942
Van Wichelen, J., Van Gremberghe, I., Vanormelingen, P., Debeer, A-E., Leporcq, B., Menzel, D., Codd, G. A., Descy, J-P., Vyverman, W. 2010 Strong effects of amoebae grazing on the biomass and genetic structure of a Microcystis bloom (Cyanobacteria). Environ. Microbiol., 12, 2797-2813.
Strain(s): 3722372637303766 
PubMed: 20545742
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Van Wichelen, J., Van Gremberghe, I., Vanormelingen, P., Vyverman.,W. 2012 The importance of morphological versus chemical defences for the bloom-forming cyanobacterium Microcystis against amoebae grazing. Aquat. Ecol., 46, 73-84.
Keywords: Microcystis; Amoebae; Grazing; Cyanobacteria; Biochemicals; Colony morphology
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DOI: 10.1007/s10452-011-9382-8
Van Winkle-Swift, K. P., Aliaga, G. R., Pommerville, J. C. 1987 Haploid spore formation following arrested cell fusion in Chlamydomonas (Chlorophyta). J. Phycol., 23, 414-427.
Keywords: cell fusion; Chlamydomonas monoica; germination; karyogamy; maturation; mutant; nuclear migration; sporulation; zygospore
Strain(s): 2229 
DOI: 10.1111/j.1529-8817.1987.tb02527.x
van Zee, M., de Rutte, J., Rumyan, R., Williamson, C., Burnes, T., Radakovits, R., Eugenio, A. S., Badih, S., Lee, S., Lee, D.-H., Archang, M., Di Carlo, D. 2022 High-throughput selection of cells based on accumulated growth and division using PicoShell particles. Proc. Natl. Acad. Sci. U. S. A., 119, e2109430119 (article ID).
Strain(s): 48 
PubMed: 35046027
DOI: 10.1073/pnas.2109430119
Vande Berg, W.J., Starr, R.C. 1971 Structure, reproduction and differentiation in Volvox gigas and Volvox powersii. In Archiv für Protistenkunde, 113, pp. 195-219.
Strain(s): 4127 
Velichko, N. V., Emelijanova, M. S., Averina, S. G., Pinevich, A. A., Pinevich, A. V. 2018 Taxonomic attribution of “Oscillatoriales” strains within the bacteriological system of cyanobacteria: Identification algorithm for operational genera. Microbiology, , 393-406.
Keywords: “Oscillatoriales” cyanobacteria; polyphasic taxonomy; form-genus; PCC type strains; 16S rRNA gene sequencing; HIP1 fingerprinting
Strain(s): 3735 
DOI: 10.1134/S0026261718030141
Velmurugan, A. & Muthukaliannan, G. K. 2023 Homologous and heterologous expression of phytoene synthase gene in marine microalgae Dunaliella salina and its potential as aquaculture feed. Aquac. Int., 31, 3125–3144.
Keywords: Dunaliella salina; Phytoene synthase; Overexpression; Electroporation; β-carotene
Strain(s): 144 
DOI: 10.1007/s10499-023-01195-4
Villanueva, E. M. F. et al. 2022 Protist.guru: A Comparative Transcriptomics Database for Protists. J. Mol. Biol., 434, 167502 (article ID).
Strain(s): 144 
PubMed: 35389344
DOI: 10.1016/j.jmb.2022.167502
Wacklin, P., Hoffmann, L., Komárek, J. 2009 Nomenclatural validation of the genetically revised cyanobacterial genus Dolichospermum (Ralfs ex Bornet et Flahault) comb. nova. Fottea, 9, 59-64.
Keywords: Cyanobacteria; Anabaena; Dolichospermum; taxonomy; nomenclatoric validation
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Wada, H., Hirasawa, R., Omata, T., Murata, N. 1984 The lipid phase of thylakoid and cytoplasmic membranes from the blue-green algae (cyanobacteria), Anacystis nidulans and Anabaena variabilis. Plant Cell Physiol., 25, 907-911.
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DOI: 10.1093/oxfordjournals.pcp.a076805
Wada, M., Hara, Y., Kato, M., Yamada, M., Fujii, T. 1987 Diurnal appearance, fine structure, and chemical composition of fatty particles in Heterosigma akashiwo (Raphidophyceae). Protoplasma, 137, 134-139.
Strain(s): 6 
DOI: 10.1007/BF01281148
Wada, M., Satoh, S., Kasamo, k., Fujii, T. 1989 Presence of a Na+-activated ATPase in the plasma membrane of the marine raphidophycean Heterosigma akashiwo. Plant Cell Physiol., 30, 923-928.
Keywords: ATPase; Heterosigma akashiwo; plasma membrane; sodium ion
Strain(s): 6 
DOI: 10.1093/oxfordjournals.pcp.a077826
Wada, M., Urayama, O., Satoh, S., Hara, Y., Ikawa, Y., Fujii, T. 1992 A marine algal Na+-activated ATPase possesses an immunologically identical epitope to Na+, K+-ATPase. FEBS Lett., 309, 272-274.
Keywords: Akashiwo; Na+-ATPase; Na+, K+-ATPase; epitope mapping; antibody
Strain(s): 6 
Wada, Y., Yokotera, H., Yamazaki, K., Toyonaga, K. 2004 Study on the multiply capability of phytoplankton at the artificial repetition on blight and dark condition. Advance in River Engineering, Vol.10, 465-470 (in Japanese with English summary).
Keywords: destratification system; multiply capability; blight and dark condition; Microcystis; algal growth potential; record of light shield
Strain(s): 44 
Wagstaff, B. A., Rejzek, M., Kuhaudomlarp, S., Hill, L., Mascia, I., Nepogodiev, S. A., Dorfmueller, H. C., Field, R. A. 2019 Discovery of an RmlC/D fusion protein in the microalga Prymnesium parvum and its implications for NDP-β-L-rhamnose biosynthesis in microalgae. J. Biol. Chem., 294, 9172-9185.
Strain(s): 381 
PubMed: 31010825
DOI: 10.1074/jbc.RA118.006440
Wakahama, T., Laza-Martínez, A., Mohd Taha., A.I.B.H., Okuyama, H., Yoshida, K., Kogame, K., Awai, K., Kawachi, M., Maoka, T., Takaichi, S. 2012 Structural confirmation of a unique carothenoid lactoside, P457, in Symbiodinium sp. strain NBRC 104787 isolated from a sea anemone and ITS distribution in dinoflagellates and various marine organisms. J. Phycol., 48, 1392-1402.
Keywords: carotenoid; dinoflagellates; P457; peridinin; Symbiodinium; symbiosis
Strain(s): 48140926382639264026422746 
PubMed: 27009990
DOI: 10.1111/j.1529-8817.2012.01219.x
Wakasugi, T., Nagai, T., Kapoor, M., Sugita, M., Ito, M., Ito, S., Tsudzuki, J., Nakashima, K., Tsudzuki, T., Suzuki, Y., Hamada, A., Ohta, T., Inamura, A., Yoshinaga, K., Sugiura, M. 1997 Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division. Proc. Natl. Acad. Sci. U. S. A., 94, 5967-5972.
Keywords: DNA sequence; evolution; gene map; minD; rpoA
Strain(s): 2170 
PubMed: 9159184
DOI: 10.1073/pnas.94.11.5967
Wakeman, K. C., Yamaguchi, A., Roy, M. C., Jenke-Kodama, H. 2015 Morphology, phylogeny and novel chemical compounds from Coolia malayensis (Dinophyceae) from Okinawa, Japan. Harmful Algae, 44, 8-19.
Keywords: Coolia malayensis; Cooliatoxin; High-resolution MS; Morphology; NanoLC/MS; Molecular phylogeny
Strain(s): 3637 
DOI: 10.1016/j.hal.2015.02.009
Wakisaka, Y., Suzuki, Y., Iwata, O., Nakashima, A., Ito, T., Hirose, M., Domon, R., Sugawara, M., Tsumura, N., Watarai, H., Shimobaba, T., Suzuki, K., Goda, K., Ozeki, Y. 2016 Probing the metabolic heterogeneity of live Euglena gracilis with stimulated Raman scattering microscopy. Nature Microbiology, 1, 16124 (article ID).
Strain(s): 48 
PubMed: 27670110
DOI: 10.1038/nmicrobiol.2016.124
Wan, J.-K., Chu, W.-L., Kok, Y.-Y., Lee, C.-S. 2021 Influence of polystyrene microplastic and nanoplastic on copper toxicity in two freshwater microalgae. Environ. Sci. Pollut. Res., 28, 33649–33668.
Keywords: Microplastic; Nanoplastic; Copper; Chlorella; Pseudokirchneriella subcapitata; Combined toxicity; Adsorption
Strain(s): 35 
PubMed: 33646549
DOI: 10.1007/s11356-021-12983-x
Wan, M., Hou, D., Li, Y., Fan, J., Huang, J., Liang, S., Wang, W., Pan, R., Wang, J., Li, S. 2014 The effective photoinduction of Haematococcus pluvialis for accumulating astaxanthin with attached cultivation. Bioresour. Technol., 163, 26-32.
Keywords: Haematococcus pluvialis; Astaxanthin; Biomass; Attached cultivation; Photoinduction
Strain(s): 144 
PubMed: 24787315
DOI: 10.1016/j.biortech.2014.04.017
Wan, M., Zhang, Z., Wang, R., Bai, W., Huang, J., Wang, W., Shen, G., Yu, A., Li, Y. 2019 High-yield cultivation of Botryococcus braunii for biomass and hydrocarbons. Biomass Bioenerg., 131, 105399 (article ID).
Keywords: Botryococcus braunii; Hydrocarbon; Heterotrophy; Photoautotrophy
Strain(s): 836 
DOI: 10.1016/j.biombioe.2019.105399
Wang, C., Wang, Z., Luo, F., Li, Y. 2017 The augmented lipid productivity in an emerging oleaginous model alga Coccomyxa subellipsoidea by nitrogen manipulation strategy. World J. Microbiol. Biotechnol., 33, 160 (article ID).
Keywords: Coccomyxa subellipsoidea; Nitrogen manipulation; Lipid; Fatty acids; Metabolites
Strain(s): 2166 
PubMed: 28752265
DOI: 10.1007/s11274-017-2324-4
Wang, H., Munke, A., Li, S., Tomaru, Y., Okamoto, K. 2022 Structural insights into common and host-specific receptor-binding mechanisms in algal picorna-like viruses. Viruses-Basel, 14, 2369 (article ID).
Keywords: Marnaviridae; algal bloom; algal viruses; icosahedral viruses; ssRNA viruses
Strain(s): 3713 
PubMed: 36366467
DOI: 10.3390/v14112369
Wang, K. & Mou, X. 2021 Coordinated diel gene expression of cyanobacteria and their microbiome. Microorganisms, 9, 1670 (article ID).
Keywords: Microcystis; cyanobacterial blooms; diel transcription; microbiome
Strain(s): 843 
PubMed: 34442749
DOI: 10.3390/microorganisms9081670
Wang, L. 2018 Structural characterisation of Histidine Kinase 2. PhD thesis, Queen Mary University of London, U.K., 214 pp.
Strain(s): 843 
DOI: 10.1111/pre.12203
Wang, L., Yamano, T., Kajikawa, M., Hirono, M., Fukuzawa, H. 2014 Isolation and characterization of novel high-CO2-requiring mutants of Chlamydomonas reinhardtii. Photosynth. Res., 121, 175-184.
Keywords: Chlamydomonas reinhardtii; Carbon-concentrating mechanism; CO2-signal transduction; High-CO2-requiring mutants
Strain(s): 2235 
PubMed: 24549931
DOI: 10.1007/s11120-014-9983-x
Wang, Q., Shen, Q., Wang, J., Zhao, J., Zhang, Z., Lei, Z., Yuan, T., Shimizu, K., Liu, Y., Lee, D.-J. 2022 Insight into the rapid biogranulation for suspended single-cell microalgae harvesting in wastewater treatment systems: Focus on the role of extracellular polymeric substances. Chem. Eng. J., 430, 132631 (article ID).
Strain(s): 2195 
DOI: 10.1016/j.cej.2021.132631
Wang, Q., Yang, Y., Shen, Q., Chen, X., Li, F., Wang, J., Zhang, Z., Lei, Z., Yuan, T., Shimizu, K. 2022 Energy saving and rapid establishment of granular microalgae system from tiny microalgae cells: Effect of decrease in upflow air velocity under intermittent aeration condition. Bioresour. Technol., 363, 127860 (article ID).
Keywords: Microalgae biogranulation; Settleability; Upflow air velocity; Nutrients removal; Energy efficiency
Strain(s): 2195 
PubMed: 36041681
DOI: 10.1016/j.biortech.2022.127860
Wang, Y., Chiu, SY., Ho, SH., Liu, Z., Hasunuma, T., Chang, TT., Chang, KF., Chang, JS., Ren NQ., Kondo, A. 2016 Improving carbohydrate production of Chlorella sorokiniana NIES-2168 through semi-continuous process coupled with mixotrophic cultivation. Biotechnol. J., 11, 1072–1081.
Keywords: Carbohydrate; Chlorella; Fed-batch; Mixotrophic cultivation; Semi-continuous process
Strain(s): 2168 
PubMed: 27312599
DOI: 10.1002/biot.201500270
Wang, Y., Seppänen-Laakso, T., Rischer, H., Wiebe, M. G. 2018 Euglena gracilis growth and cell composition under different temperature, light and trophic conditions. PLoS One, 13, e0195329 (article ID).
Strain(s): 48 
PubMed: 29649233
DOI: 10.1371/journal.pone.0195329
Wang, Z., Gui, H., Luo, Z., Zhen, Z., Yan, C., Xing, B. 2019 Dissolved organic phosphorus enhances arsenate bioaccumulation and biotransformation in Microcystis aeruginosa. Environ Pollut., 252, 1755-1763.
Keywords: Arsenate; Subcellular distribution; Functional gene; Organic phosphorus; Algae
Strain(s): 843 
PubMed: 31295694
DOI: 10.1016/j.envpol.2019.06.126
Ward, C. J., Beattie, K. A., Lee, E. Y. C., Codd, G. A. 1997 Colorimetric protein phosphatase inhibition assay of laboratory strains and natural blooms of cyanobacteria: comparisons with high-performance liquid chromatographic analysis for microcystins. FEMS Mircobiol. Lett., 153, 465-473.
Keywords: Microcystin; Protein phosphatase; Cyanobacteria; High-performance liquid chromatography
Strain(s): 42102103104298595 
PubMed: 9271876
DOI: 10.1111/j.1574-6968.1997.tb12611.x
Watanabe, A. 1959 Distribution of nitrogen-fixing blue-green algae in various areas of south and east Asia. J. Gen. Appl. Microbiol., 5, 21-29.
Strain(s): 2237 
DOI: 10.2323/jgam.5.21
Watanabe, A. 1959 On the mass-culturing of a nitrogen-fixing blue-green alga, Tolypothrix tenuis. J. Gen. Appl. Microbiol., 5, 85-91.
Strain(s): 37 
Watanabe, A. 1960 List of algal strains in collection at the Institute of Applied Microbiology, University of Tokyo. J. Gen. Appl. Microbiol., 6, 283-292.
Strain(s): 192122232425262829374749226227 
Watanabe, A. 1962 Effect of nitrogen-fixing blue-green alga: Tolypothrix tenuis on the nitrogenous fertility of paddy soil and on the crop yield of rice plant. J. Gen. Appl. Microbiol., 8, 85-91.
Strain(s): 37 
Watanabe, A. & Yamamoto, Y. 1967 Heterotrophic nitrogen fixation by the blue-green alga Anabaenopsis circularis. Nature, 214, 738
Strain(s): 21 
DOI: 10.1038/214738a0
Watanabe, A. & Yamamoto, Y. 1968 Effects of antibiotics on the growth of microalgae. Phykos, 7, 248-258.
Strain(s): 1937 
Watanabe, A., Hattori, A., Fujita, Y., Kiyohara, T. 1959 Large scale culture of a blue-green alga, Tolypothrix tenuis, utilizing hot spring and natural gas as heat and carbon dioxide sources. J. Gen. Appl. Microbiol., 5, 51-57.
Strain(s): 37 
Watanabe, A., Ito, R., Sasa, T. 1955 Effect of various chemicals upon the growth of daphnids. J. Gen. Appl. Microbiol., 1, 190-193.
Strain(s): 37 
Watanabe, A., Ito, R., Sasa, T. 1955 Micro-algae as a source of nutrients for daphnids. J. Gen. Appl. Microbiol., 1, 137-141.
Strain(s): 37 
Watanabe, A., Shirota, M., Endo, H., Yamamoto, Y. 1969 An observation of the practical applications of nitrogen fixing blue-green algae for rice cultivation. In The Third International Conference on the Global Impacts of Applied Microbiology, Bombay, pp. 53-64.
Strain(s): 37 
Watanabe, F., Miyamoto, E., Nakano, Y. 2001 Inactive corrinoid-compound significantly decreases in Spirulina platensis grown in a cobalt-deficient medium. J. Agric. Food Chem., 49, 5685-5688.
Keywords: Vitamin B12; pseudovitamin B12; algal health food; spirulina tablet; intrinsic facto
Strain(s): 39 
PubMed: 11714378
DOI: 10.1021/jf010733i
Watanabe, H., Nakajima, F., Kasuga, I., Furumai, H. 2011 Toxicity evaluation of road dust in the runoff process using a benthic ostracod Heterocypris incongruens. Sci. Total Environ., 409, 2366-2372.
Keywords: road dust; toxicity; benthic ostracod; runoff process; solid/liquid ratio; holding time; water phase; solid phase
Strain(s): 94 
PubMed: 21458026
DOI: 10.1016/j.scitotenv.2011.03.001
Watanabe, H., Nakajima, F., Kasuga, I., Furumai, H. 2013 Application of whole sediment toxicity identification evaluation proceduresto road dust using a benthic ostracod Heterocypris incongruens. Ecotox. Environ. Safe., 89, 245-251.
Keywords: Road dust; Ostracod; Toxicity identification evaluation; Adsorbent
Strain(s): 94 
PubMed: 23294638
DOI: 10.1016/j.ecoenv.2012.12.003
Watanabe, H., Tamura, I., Abe, R. Takanobu, H., Nakamura, A., Suzuki, T., Hirose, A., Nishimura, T., Tatarazako, N. 2016 Chronic toxicity of an environmentally relevant mixture of pharmaceuticals to three aquatic organisms (alga, daphnid, and fish). Environ. Toxicol. Chem., 35, 996-1006.
Keywords: Mixture toxicity; Pharmaceutical; Short-term chronic toxicity test; Concentration addition; Independent action
Strain(s): 35 
PubMed: 26472177
DOI: 10.1002/etc.3285
Watanabe, K. I., Ehara, M., Inagaki, Y., Ohama, T. 1998 Distinctive origins of group I introns found in the COXI genes of three green algae. Gene, 213, 1-7.
Keywords: Group I intron; Chlorella vulgaris; Scenedesmus quadricauda; Protosiphon botryoides; cytochrome c oxidase subunit I; intron homing; frameshift
Strain(s): 96227 
DOI: 10.1016/S0378-1119(98)00235-2
Watanabe, M. 1977 A preliminary study of Gonium viridistellatum sp. nov. (Chlorophyta, Volvocaceae). Bull. Jpn. Soc. Phycol., 25, Suppl. (Mem. Iss. Yamada), 379-384.
Strain(s): 288289290 
Watanabe, M. 1978 A taxonomic study of the Closterium calosporum complex (1). Bull. Natn. Sci. Mus., Ser. B (Bot.), 4, 133-154, pls. 1-8.
Strain(s): 163164165168171186187188189191192193194197339341 
Watanabe, M. 1979 A taxonomic study of the Closterium calosporum complex (2). Bull. Natn. Sci. Mus., Ser. B (Bot.), 5, 1-23, pls. 9-11.
Strain(s): 163164165168186187188189191192194197339340341 
Watanabe, M. 1982 The diurnal variations in the cell densities of Olisthodiscus luteus and Skeletonema costatum. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 143-154 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. 1996 Isolation, cultivation and classification of bloom-forming Microcystis in Japan. In Toxic Microcystis, Eds. by Watanabe, M.F., Harada, K., Carmichael W.W. & Fujii, H., CRC Press, Boca Raton, pp. 13-34.
Strain(s): 105010511052105310541061106310641065106610671068107010711072107410751076107710791080108110821083108510861087108810891090109310951097109810991105110711081109111011131115111611171122112411251126112711301132113311341139114011411142114611471149115211531154115511571159116011611162116311641173117811821183118411871189119411961198120012031205120612091213121612191222122512301232123412371239124112431246 
Watanabe, M. 1998 Studies on planktonic blue-green algae 8. Anabaena species with twisted trichomes in Japan. Bull. Natn. Sci. Mus., Tokyo, Ser. B, 24(1), 1-13.
Keywords: Anabaena; plankton; blue-green algae; Cyanophyta; taxonomy
Strain(s): 1652 
Watanabe, M. & Harashima, A. 1982 Bio-convection in culture of Olisthodiscus luteus and Rayleigh-Taylor instability. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 155-173 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. & Harashima, A. 1982 The distribution pattern of Olisthodiscus luteus in convection cells. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 175-190 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. F. 1994 Cultivation of toxic blue-green algae [Yûdoku-ransô no baiyô]. In Waterbloom of Blue-green Algae and Their Toxins [Aoko, sono shutsugen to dokuso], Eds. by Watanabe, M. F., Harada,K. & Fujii, H., University of Tokyo Press, pp. 101-116 (in Japanese).
Strain(s): 10591091 
Watanabe, M. F. 1996 Production of microcystins. In Toxic Microcystis, Eds. by Watanabe, M. F., Harada, K., Carmichael W. W. & Fujii, H., CRC Press, Boca Raton, pp. 35-56.
Strain(s): 1053105410591061106310641066106710681070107110721074107610771079108110831085108610901091109310951097109810991140 
Watanabe, M. F. & Watanabe, M. 1994 Bloom-forming cyanophytes and their toxins [Aoko wo tsukuru ransô to sono dokuso]. Mizu, 36, 24-29 (in Japanese).
Strain(s): 106410661070107110771086109310951099 
Watanabe, M. F., Harada, K-I., Matsuura, K., Watanabe, M., Suzuki, M. 1989 Heptapeptide toxin production during the batch culture of two Microcystis species (Cyanobacteria). J. Appl. Phycol., 1, 161-165.
Strain(s): 3349 
DOI: 10.1007/BF00003879
Watanabe, M. F., Oishi, S., Harada, K-I., Matsuura, K., Kawai, H., Suzuki, M. 1988 Toxins contained in Microcystis species of cyanobacteria (blue-green algae). Toxicon, 26, 1017-1025.
Strain(s): 103112105910843349 
PubMed: 3149802
DOI: 10.1016/0041-0101(88)90200-0
Watanabe, M. F., Oishi, S., Watanabe, Y., Watanabe, M. 1986 Strong probability of lethal toxicity in the blue-green alga Microcystis viridis Lemmermann. J. Phycol., 22, 552-556.
Strain(s): 981001011031122981053105410551058105910671091 
DOI: 10.1111/j.1529-8817.1986.tb02502.x
Watanabe, M. F., Tsuji, K., Watanabe, Y., Harada, K-I., Suzuki, M. 1999 Release of heptapeptide toxin (microcystin) during the decomposition process of Microcystis aeruginosa. Natural Toxins, 1, 48-53.
Keywords: Blue-green algae; Cyanobacteria; Heterotrophic bacteria; Aerobic decomposition
Strain(s): 3349 
DOI: 10.1002/nt.2620010110
Watanabe, M. F., Watanabe, M., Kato, T., Harada, K., Suzuki, M. 1991 Composition of cyclic peptide toxins among strains of Microcystis aeruginosa (blue-green algae, Cyanobacteria). Bot. Mag. Tokyo, 104, 49-57.
Keywords: blue-green algae; cyanobacteria; cyclic peptide; Microcystis; strain; toxin
Strain(s): 105310541060106110631064106610671068107010711072107410761077107910801081108310851086109010931095109710981099114011423349 
DOI: 10.1007/BF02493403
Watanabe, M. M. 1977 Biosystematics in Closterium of sexual unicellular green algae and Calothrix and Spirulina of asexual filamentous blue-green algae, with special reference to the analyses of natural populations. Thesis D. Sci., Hokkaido University, 114 pp., 28 tables, 54 figs.
Strain(s): 39454651525354555658596061626364656667686970261262266268 
Watanabe, M. M. 1989 Toxicity of algae [Sôrui no dokusei]. Jpn. J. Water Poll. Res., 12, 750-756 (in Japanese).
Strain(s): 102 
Watanabe, M. M. & Ichimura, T. 1977 Fresh- and salt-water forms of Spirulina platensis in axenic cultures. Bull. Jpn. Soc. Phycol., 25, Suppl. (Mem. Iss. Yamada), 371-377.
Strain(s): 394546 
Watanabe, M. M. & Ichimura, T. 1978 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. II. Reproductive isolation and morphological variation among several populations from the Northern Kanto area in Japan. Bot. Mag. Tokyo, 91, 1-10.
Strain(s): 51525354555658596061626364656970261 
Watanabe, M. M. & Ichimura, T. 1978 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. III. Degrees of sexual isolation among the three population groups from the Northern Kanto area. Bot. Mag. Tokyo, 91, 11-24.
Strain(s): 51525354555658596061626364656970261 
DOI: 10.1007/BF02489099
Watanabe, M. M. & Ichimura, T. 1982 Biosystematic studies of the Closterium peracerosum-strigosum-littorale complex. IV. Hybrid breakdown between two closely related groups, Group II-A and Group II-B. Bot. Mag. Tokyo, 95, 241-247.
Keywords: Closterium; fertility; hybrid breakdown; post-zygotic isolating mechanism; viability
Strain(s): 5152536465 
DOI: 10.1007/BF02488536
Watanabe, M. M. & Kurogi, M. 1975 Taxonomic reexamination of the two species of blue-green algae, Calothrix scopulorum and C. crustacea. Bot. Mag. Tokyo, 88, 111-125.
Strain(s): 266268 
DOI: 10.1007/BF02491246
Watanabe, M. M. & Nakamura, Y. 1984 Growth characteristics of a red tide flagellate, Heterosigma akashiwo Hada. 1. The effects of temperature, salinity, light intensity and pH on growth. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 51-58 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. M. & Nakamura, Y. 1984 Growth characteristics of a red tide flagellate, Heterosigma akashiwo Hada. 2. The utilization of nutrients. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 59-68 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. M. & Sawaguchi, T. 1995 Cryopreservation of a water-bloom forming cyanobacterium, Microcystis aeruginosa f. aeruginosa. Phycol. Res., 43, 111-116.
Keywords: cryopreservation; DMSO; Microcystis aeruginosa f. aeruginosa; rapid cooling; two step cooling
Strain(s): 4490 
DOI: 10.1111/j.1440-1835.1995.tb00012.x
Watanabe, M. M., Kasai, F., Hiwatari, T., Suda, S., Nei, T. 1984 Cryopreservation of microalgae in liquid nitrogen - Survival of algal cultures after freezing. Jpn. J. Freez. Dry., 30, 23-26 (in Japanese with English title).
Strain(s): 1819212426293139404144454650737475767780818788899091939598991001011201221311351371441512042072132572633794152219223522392579 
Watanabe, M. M., Kohata, K., Nakamura, Y., Watanabe, M. 1982 Phosphate-limited continuous culture of a red tide flagellate, Olisthodiscus luteus: establishment of its method and the analysis of growth kinetics. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 113-130 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. M., Nakamura, Y., Kohata, K. 1983 Diurnal vertical migration and dark uptake of nitrate and phosphate of the red tide flagellates, Heterosigma akashiwo Hada and Chattonella antiqua (Hada) Ono (Raphidophyceae). Jpn. J. Phycol. (Sôrui), 31, 161-166.
Keywords: Chattonella antiqua; diurnal vertical migration; Heterosigma akashiwo; nitrate and phosphate uptakes; red tide
Strain(s): 16 
Watanabe, M. M., Nakamura, Y., Kohata, K. 1984 Diurnal vertical migration of a red tide flagellate, Heterosigma akashiwo Hada, with special reference to the ecological role. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 69-77 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M. M., Nakamura, Y., Mori, S., Yamochi, S. 1982 Effects of physico-chemical factors and nutrients on the growth of Heterosigma akashiwo Hada from Osaka Bay, Japan. Jpn. J. Phycol. (Sôrui), 30, 279-288.
Keywords: growth rate; Heterosigma akashiwo; minimum cell quota; Raphidophyceae; red tide
Strain(s): 6 
Watanabe, M. M., Suda, S., Kasai, F., Sawaguchi, T. 1985 Axenic cultures of the three species of Microcystis (Cyanophyta = Cyanobacteria). Bull. JFCC, 1, 57-63.
Strain(s): 89102107111298 
Watanabe, M. M., Yamochi, S., Kohata, K., Watanabe, M. 1982 Vertical migration and diel periodicity of phosphate uptake in a red tide flagellate, Olisthodiscus luteus. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 131-141 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M., Kohata, K., Kunugi, M. 1987 31P nuclear magnetic resonance study of intracellular phosphate pools and polyphosphate metabolism in Heterosigma akashiwo (Hada) Hada (Raphidophyceae). J. Phycol., 23, 54-62.
Keywords: cell extraction; Heterosigma akashiwo; intracellular phosphate; phosphodiester; 31P-NMR; polyphosphate; Raphidophyceae; sugar-phosphate
Strain(s): 6 
DOI: 10.1111/j.1529-8817.1987.tb04426.x
Watanabe, M., Kohata, K., Kunugi, M. 1987 Diel vertical migration of Heterosigma akashiwo under salinity and phosphate stratifications and metabolism of intracellular phosphate pools. Res. Rep. Natl. Inst. Environ. Stud., No. 110, 103-114 (in Japanese with English summary).
Strain(s): 6 
Watanabe, M., Kohata, K., Kunugi, M. 1988 Phosphate accumulation and metabolism by Heterosigma akashiwo (Raphidophyceae) during diel vertical migration in a stratified microcosm. J. Phycol., 24, 22-28.
Keywords: ATP; diel vertical migration; Heterosigma akashiwo; intracellular phosphate; 31P-NMR; phosphate accumulation; polyphosphates; Raphidophyceae; salinity and nutrient stratifications
Strain(s): 6 
DOI: 10.1111/j.1529-8817.1988.tb04452.x
Watanabe, M., Kubota, H., Wada, H., Narikawa, R., Ikeuchi, M. 2011 Novel supercomplex organization of PSI in Anabaena and Cyanophora paradoxa. Plant Cell Physiol., 52, 162-168.
Keywords: Anabaena; blue-native PAGE; Cyanophora paradoxa; PSI; supercomplex
Strain(s): 547 
PubMed: 21118826
DOI: 10.1093/pcp/pcq183
Watanabe, M., Niiyama, Y., Tuji, A. 2004 Studies on planktonic blue-green algae 10. Classification of planktonic Anabaena with coiled trichomes maintained in the National Science Mueum, Tokyo. Bull. Natn. Sci. Mus., Tokyo, Ser. B, 30(4), 135-149.
Keywords: morphology; taxonomy; planktonic; Anabaena; strains; culture; blue-green algae; Japan
Strain(s): 16451647165016561659166216631677167916841690169316951696 
Watanabe, M., Sato, M., Kondo, K., Narikawa, R., Ikeuchi, M. 2012 Phycobilisome model with novel skeleton-like structures in a glaucocystophyte Cyanophora paradoxa. Biochim. Biophys. Acta-Bioenerg., 1817, 1428-1435.
Keywords: Antenna; Cyanophora paradoxa NIES 547; Glaucocystophyte; Linker protein; Phycobilisome, skeleton-like model
Strain(s): 547 
PubMed: 22172737
DOI: 10.1016/j.bbabio.2011.11.013
Watanabe, M., Takamatsu, T., Kohata, K., Kunugi, M., Kawashima, M., Koyama, M. 1989 Luxury phosphate uptake and variation of intracellular metal concentrations in Heterosigma akashiwo (Raphidoohyceae). J. Phycol., 25, 428-436.
Keywords: ESR; Heterosigma akashiwo; intracellular metals; luxury phosphate uptake; neutron activation analysis; polyphosphate; 31P-NMR
Strain(s): 6 
DOI: 10.1111/j.1529-8817.1989.tb00247.x
Watanabe, M., Watanabe, M. M., Kohata, K., Harashima, A. 1982 The use of a controlled experimental ecosystem (Microcosm) in studies of the mechanism of red tide outbreaks. Res. Rep. Natl. Inst. Environ. Stud., No. 30, 11-26 (in Japanese with English summary).
Strain(s): 6 
Watanabe, S. 1981 Observations on Urnella terrestris Playfair (Chlorophyceae, Chlorococc-ales) in culture. Phycologia, 20, 12-15.
Strain(s): 156 
DOI: 10.2216/i0031-8884-20-1-12.1
Watanabe, S. 1983 New and interesting green algae from soils of some Asian and Oceanian regions. Arch. Protistenk., 127, 223-270.
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Watanabe, S. 2020 Reclassification of Chlamydomonas monticola as Heterochlamydomonas (Volvocales, Chlorophyceae). Phycol. Res., 68, 332-335.
Keywords: basal apparatus; 18S rDNA, naked swimming cells; parallel basa bodies; pyrenoid; soil alga; unequal flagella
Strain(s): 157 
DOI: 10.1111/pre.12431
Watanabe, S. & Lewis, L. A. 2017 Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy. Phycologia, 56, 329-353.
Keywords: Alvikia; Ancestral state reconstruction; Chlamydomonas moewusii; Chlorococcum; Eubrownia; Moewusinia; Parachlorococcum; Spongiococcum; Tetracystis
Strain(s): 155 
DOI: 10.2216/16-64.1
Watanabe, S. & Nakada, T. 2018 Gymnomonas nepalensis gen. et sp. nov. for the naked flagellate strain ‘Nepal’, formerly identified as Dunaliella lateralis (Volvocales, Chlorophyceae). Phycol. Res., 66, 167-172.
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DOI: 10.1111/pre.12219
Watanabe, S., Fučíková, K., Lewis, L. A., Lewis P. O. 2016 Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza. Am. J. Bot., 103, 865-875.
Keywords: biodiversity; chloroplast genome; epiphyte; gene loss; pyrenoid; transmission electron microscopy
Strain(s): 3575 
PubMed: 27208355
DOI: 10.3732/ajb.1500481
Watanabe, S., Matsunami, N., Okuma, I., Naythen, P. T., Fujibayashi, M., Iseri, Y., Hao, A., Kuba, T. 2022 Blue light irradiation increases the relative abundance of the diatom Nitzschia palea in co-culture with cyanobacterium Microcystis aeruginosa. Water Environ. Res., 94, e10707 (article ID).
Keywords: algae; competition; light-emitting diode; water blooms
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PubMed: 35403347
DOI: 10.1002/wer.10707
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Keywords: contractile vacuoles; dorsoventral zoospores; Ettlia; 18S rDNA; ITS2; Neochloris; soil algae; microtubular roots; Chlorophytes; SSU rDNA
Strain(s): 3574 
DOI: 10.1080/09670262.2022.2042603
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Keywords: Chlorophyceae; Chlorophyta; Chlorosarcinopsis; Chlorosphaeropsis; Desmotetra; 18S rDNA; green algae; Neochlorosarcina; phylogeny; Sarcinochlamys
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DOI: 10.1111/j.1529-8817.2006.00196.x
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Strain(s): 447464 
DOI: 10.2216/15-147.1
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Keywords: Chlorophyceae; flagella; green algae; Hemiflagellochloris; Kazakhstan; unequal lengths
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Keywords: climate change; CO2; CO2 fixation; microalgae; Chlorella
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Watanuki, T., Ohno, M., Nakamura, S. 1987 Growth characteristics of Dunaliella sp., unicellular green alga isolated from a salt lake along the coastal region of Lüetzow-Holm bay, Antarctica. Rep. Usa mar. biol. Inst., Kouchi Univ., 9, 139-147.
Keywords: Dunaliella sp.; Green algae; Saline lake; Antarctica
Strain(s): 3744 
Weber, A. P. M., Oesterhelt, C., Gross, W., Bräutigam, A., Imboden, L. A., Krassovskaya, I., Linka, N., Truchina, J., Schneidereit, J., Voll, H., Voll, L. M., Zimmermann, M., Jamai, A., Riekhof, W. R., Yu, B., Garavito, R. M., Benning, C. 2004 EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts. Plant Mol. Biol., 55, 17-32.
Keywords: cyanidiales; EST-analysis; extremophile; genomics
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PubMed: 15604662
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Keywords: Microcystis; buoyancy; colony formation; extracellular polysaccharides; tightly cell-bound extracellular polysaccharides
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Keywords: Microcystis; Gas vesicle; Buoyancy; Sedimentation
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Keywords: Buoyancy; Colony formation; Extracellular polysaccharides; Cationic ions; Microcystis
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Keywords: Haematococcus pluvialis; Astaxanthin; Ethanol; ipi; Fed-batch induction
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PubMed: 26215339
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Keywords: cyanobacteria; Red Sea; oligonucleotide probes; 16S rRNA; TSA
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Wetterwald, L., Leybros, A., Fleury, G., Delrue, F., Dimitriades-Lemaire, A., Chambonniere, P., Hertz, A. 2023 Supercritical CO2 extraction of neutral lipids from dry and wet Chlorella vulgaris NIES 227 microalgae for biodiesel production. J. Environ. Chem. Eng., 11, (article ID).
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Keywords: Astaxanthin; carotenogenesis; Haematococcus lacustris; isobutyl-cyanoacrylate; nanoparticles
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Keywords: abnormal swimming behavior; cell mortality; cell wall damage; Chlamydomonas rein-hardtii; poly(isobutyl-cyanoacrylate) nanoparticles; ROS
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Wong, D. K., Grisdale, C. J., Slat, V. A., Rader, S. D., Fast, N. M. 2023 The evolution of pre-mRNA splicing and its machinery revealed by reduced extremophilic red algae. J. Eukaryot. Microbiol., 70, e12927 (article ID).
Keywords: Cyanidiales; intron; spliceosome; transcriptome
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Keywords: Antioxidant responses; Harmful algal blooms; Lipid peroxidation; Reactive oxygen species
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Keywords: Cyanobacterial bloom; Algicidal activity; Photosystem; Electron transport; Water quality; Light conditions
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Keywords: diversity; geographical distribution; microcystin; Microcystis
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Wu, Z.Y., Chen, G.Q., Chong, S.K., Mak, N.-K., Chen, F., Jiang, Y. 2010 Ultraviolet-B radiation improves astaxanthin accumulation in green microalga Haematococcus pluvialis. Biotechnol. Lett., 32, 1911-1914.
Keywords: Antioxidant enzyme; Astaxanthin; Haematococcus pluvialis; Ultraviolet-B radiation
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Wullur, S., Sakakura, Y., Hagiwara, A. 2011 Application of the minute monogonont rotifer Proales similis de Beauchamp in larval rearing of seven-band grouper epinephelus septemfasciatus. Aquaculture, 315, 355-360.
Keywords: Rotifer; Proales similis; Brachionus rotundiformis; Live food; Fatty acid; Epinephelus septemfasciatus
Strain(s): 2146 
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Keywords: Keywords; Harvesting; Sedimentation efficiency; Sedimentation rate; Calcium recovery
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Keywords: light-harvesting antenna; phycobilisomes; time-resolved spectroscopy; energy transfer
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DOI: 10.3390/pr11061656
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Keywords: Haematococcus pluvialis; Proline; Biomass; Astaxanthin productivity; Abiotic stresses
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PubMed: 36528181
DOI: 10.1016/j.biortech.2022.128488
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Keywords: Iceland; lichen; Parmeliaceae; phylogeny; symbiosis; Trebouxia
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DOI: 10.1093/botlinnean/boaa050
Xu, M., Harmon, J., Yuan, D., Yan, S., Lei, C., Hiramatsu, K., Zhou, Y., Loo, M. H., Hasunuma, T., Isozaki, A., Goda, K. 2021 Morphological indicator for directed evolution of Euglena gracilis with a high heavy metal removal efficiency. Environ. Sci. Technol., 55, 7880-7889.
Keywords: microalgae; wastewater treatment; directed evolution; machine learning; single-cell analysis; imaging flow cytometry
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PubMed: 33913704
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Xu, S., Liu, Y., Zhang, J., Gao, B. 2021 Proteomic mechanisms for the combined stimulatory effects of glyphosate and antibiotic contaminants on Microcystis aeruginosa. Chemosphere, 267, 129244 (article ID).
Keywords: Hormesis; Combined pollution; Synergistic stimulation; Cyanobacterial bloom; Protein-protein interaction network
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Keywords: Harmful algal blooms; Algicidal activity; Antagonism; Bifunctional biocontrol agent
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Keywords: Cryomonadida; Cryothecomonas; environmental sequence; extrusome; phylogeny; Protaspis; taxonomy; ultrastructure
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Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure
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Yagawa, Y., Aizawa, K., Yang, S.-Y., Miyachi, S. 1986 Release of carbonic anhydrase from the cell surface of Chlamydomonas reinhardtii by trypsin. Plant Cell Physiol., 27, 215-221.
Keywords: carbonic anhydrase; cell surface; Chlamydomonas reinhardtii; trypsin treatment
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DOI: 10.1093/oxfordjournals.pcp.a077093
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. I. Purification and properties of the enzyme. Plant Cell Physiol., 28, 1253-1262.
Keywords: carbonic anhydrase; chloride ion-activation; Porphyridium cruentum
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DOI: 10.1093/oxfordjournals.pcp.a077413
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. II. Distribution and role in photosynthesis. Plant Cell Physiol., 28, 1509-1516.
Keywords: anti-Porphyridium carbonic anhydrase antibody; carbonic anhydrase; immunogold electron microscopy; intracellular distribution; Porphyridium cruentum
Strain(s): 2138 
DOI: 10.1093/oxfordjournals.pcp.a077445
Yagawa, Y., Muto, S., Miyachi, S. 1988 Carbonic anhydrase of Chlamydomonas reinhardtii. Cellular distribution and subunit constitution in two strains. Plant Cell Physiol., 29, 185-188.
Keywords: carbonic anhydrase (cellular distribution); Chlamydomonas
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Yagawa, Y., Shiraiwa, Y., Miyachi, S. 1984 Carbonic anhydrase from the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 25, 775-783.
Keywords: Anabaena variabilis; blue-green alga; carbonic anhydrase (EC4.2.1.1); cyanobacterium; enzyme purification
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DOI: 10.1093/oxfordjournals.pcp.a076772
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1984 Growth characteristics of axenic and unialgal Microcystis isolated from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 496-503 (in Japanese with English summary).
Keywords: Microcystis; bacteria; growth; axenic; algae
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Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1987 Limiting nutrients of algal growth in Lake Kasumigaura. Jpn. J. Water Poll. Res., 10, 115-122 (in Japanese with English summary).
Keywords: Microcystis; blue-green algae; nutrients; algal growth potential
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Yagi, O., Ohkubo, N., Tomioka, N., Okada, M. 1989 Limiting nutrients of algal growth in Ushiku Marsh. Jpn. J. Limnol., 50, 139-148 (in Japanese with English summary).
Keywords: algal growth potential; Microcystis; Selenastrum; nutrient
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Yagi, O., Sudo, R., Imaoka, T., Teranishi, S. 1984 Algal growth potential on munisipal wastewater using red tide organisms. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 231-242 (in Japanese with English summary).
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Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T. 2009 Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae. Plant J., 60, 882-893.
Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS)
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Yalikun, Y., Ota, N., Guo, B., Tang, T., Zhou, Y., Lei, C., Kobayashi, H., Hosokawa, Y., Li, M., Enrique Muñoz, H., Di Carlo, D., Goda, K., Tanaka Y. 2020 Effects of flow-induced microfluidic chip wall deformation on imaging flow cytometry. Cytom. Part A, 97, 909-920.
Keywords: glass microchannel; high-speed imaging flow cytometry; microchannel deformation effects; sample focusing
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PubMed: 31856398
DOI: 10.1002/cyto.a.23944
Yamada, E., Hirota, T., Hatori, N., Kitao, Y., Fuse, Y., Aoki, S., Karatani, H., Matsunaga, T. 2012 Characterization of protein-like fluorophores released from lake phytoplankton on the basis of fractionation and electrophoresis. Anal. Sci., 28, 595-600.
Strain(s): 109275665 
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Yamada, E., Ohara, S., Uehara, T., Hirota, T., Hatori, N., Fuse, Y., Aoki, S. 2012 Biodegradation of dissolved organic matter (DOM) released from phytoplankton in Lake Biwa. Anal. Sci., 28, 675-681.
Strain(s): 109275665 
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Yamada, E., Sasai, K., Higa, R., Mizuguchi, H., Fuse Y. 2020 Characterization and dynamic analysis of dissolved proteins in Lake Biwa using two-dimensional electrophoresis. Anal. Sci., 36, 753-759.
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Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y. 2018 Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers. J. Environ. Safety, 9, 23-32.
Keywords: photoirradiation; wavelength cut filter; photodegradation; dissolved organic matter; fulvic-like fluorophore; protein-like fluorophore; environmental waters
Strain(s): 109275665 
DOI: 10.11162/daikankyo.E17RP1101
Yamada, K., Katsura, H., Noël, M.-H., Ichinomiya, M., Kuwata, A., Sato, S., Yoshikawa, S. 2019 Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). J. Phycol., 55, 196-203.
Keywords: annulus; diatom; pattern center; scale; sternum
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PubMed: 30320892
DOI: 10.1111/jpy.12800
Yamada, K., Moriyama, R., Hatano, S. 1987 Production of osmotically labile cells in Chlorella ellipsoidea C-27 and C-102 by enzyme treatment. Agric. Biol. Chem., 51, 579-580.
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DOI: 10.1080/00021369.1987.10868044
Yamada, K., Nagasato, C., Motomura, T., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K., Yoshikawa, S. 2017 Mitotic spindle formation in Triparma laevis NIES-2565 (Parmales, Heterokontophyta). Protoplasma, 254, 461-471.
Keywords: Central spindle; Centriole; Diatom; Extranuclear spindle; Mitosis; Nuclear envelope
Strain(s): 2565 
PubMed: 27048177
DOI: 10.1007/s00709-016-0967-x
Yamada, K., Yoshikawa, S., Ichinomiya, M., Kuwata, A., Kamiya, M., Ohki, K. 2014 Effects of silicon-limitation on growth and morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta). PLoS One, 9, e103289 (article ID).
Strain(s): 2565 
PubMed: 25054645
DOI: 10.1371/journal.pone.0103289
Yamada, K., Yoshikawa, S., Ohki, K., Ichinomiya, M., Kuwata, K., Motomura, T., Nagasato, C. 2016 Ultrastructural analysis of siliceous cell wall regeneration in the stramenopile Triparma laevis (Parmales, Bolidophyceae). Phycologia, 55, 602-609.
Keywords: Cell wall regeneration; Chloroplast endoplasmic reticulum; Exocytosis; Silica biomineralization; Silica deposition vesicle
Strain(s): 2565 
DOI: 10.2216/16-32.1
Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J. 2010 Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan. J. Oceanogr., 66, 755-771.
Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM
Strain(s): 2837283828392841284228432844 
DOI: 10.1007/s10872-010-0062-4
Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M. 2017 Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema. Phycol. Res., 65, 217-225.
Keywords: cox1; genetic marker; LSU rDNA; phylogenetictree; species delimitation; SSU rDNA
Strain(s): 16223283728382842 
DOI: 10.1111/pre.12179
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1985 Studies on earthy-musty odor in natural water (1). Growth characteristics and 2-methylisoborneol production of Phormidium tenue. Jpn. J. Water Poll. Res., 8, 515-521 (in Japanese with English summary).
Keywords: blue-green algae; Phormidium tenue; growth characteristics; headspace-GC analysis; 2-methylisoborneol
Strain(s): 512 
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1986 Studies on earthy-musty odor in natural water (3). Isolation of bacteria-free Phormidium tenue and the effect of associated bacteria on the growth of axenic P. tenue. Jpn. J. Water Poll. Res., 9, 379-385 (in Japanese with English summary).
Keywords: Phormidium tenue; axenic; growth; 2-methylisoborneol; bacteria interaction
Strain(s): 512 
Yamada, T. & Sakaguchi, K. 1981 Protoplast induction in Chlorella species. Agric. Biol. Chem., 45, 1905-1909.
Strain(s): 6852160216521702189 
DOI: 10.1271/bbb1961.45.1905
Yamada, T. & Sakaguchi, K. 1982 Comparative studies on Chlorella cell walls: Induction of protoplast formation. Arch. Mikrobiol., 132, 10-13.
Strain(s): 2276862159216321662168217121892352 
DOI: 10.1007/BF00690809
Yamada, T. K., Miyaji, K., Nozaki, H. 2008 A taxonomic study of Eudorina unicocca (Volvocaceae, Chlorophyceae) and related species, based on morphology and molecular phylogeny. Eur. J. Phycol., 43, 317-326.
Keywords: aplanosporic strain; Eudorina unicocca; Eudorina peripheralis stat. nov.; Chlorophyceae; molecular phylogeny; morphology; taxonomy; Volvocales; Yamagishiella
Strain(s): 5786667177227237247257268708721855185618571858185918601861 
DOI: 10.1080/09670260701763484
Yamada, T. K., Tsuchikane, Y., Wu, J.-T., Sekimoto, H., Miyaji, K., Nozaki, H. 2008 Morphology and molecular phylogeny of Eudorina sp. (Volvocaceae, Chlorophyceae) from Taiwan. Hikobia, 15, 135-143.
Keywords: Eudorina elegans; Eudorina minodii; Eudorina unicocca; Eudorina peripheralis; Chlorophyceae; molecular phylogeny; morpholohy; taxsonomy; Volvocales
Strain(s): 724725726185827342735 
Yamada, T., Nakada, T., Miyaji, K., Nozaki, H. 2006 Morphology and molecular phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) newly found in Japan. J. Jpn. Bot., 81, 139-147.
Keywords: Chlorophyceae; Gonium multicoccum; ITS2; rbcL; Volvocales
Strain(s): 289569572653654851857103817071708170917111713 
Yamada, Y., Tomaru, Y., Fukuda, H., Nagata, T. 2018 Aggregate formation during the viral lysis of a marine diatom. Front. Mar. Sci., 15, 167 (article ID).
Keywords: aggregate; diatom–virus interaction; particle size distribution; settling velocity; material cycle
Strain(s): 3715 
DOI: 10.3389/fmars.2018.00167
Yamagishi, S., Yamamoto, K., Takahashi, K., Kawai-Toyooka, H., Suzuki, S., Matsuzaki, R., Yamaguchi, H., Kawachi, M., Higashiyama, T., Nozaki, H. 2023 Evolutionary analysis of MID homologs during the transition from homothallic species to heterothallic species in Volvox sect. Volvox (Chlorophyceae). Phycol. Res., 72, 46-55.
Keywords: male gamete; mating system; minus dominance gene (MID); molecular evolution; sex; sperm packet; volvocine green algae
Strain(s): 28945646054154454556957257458265265365473285185285787289189213621363170817101859245725692735273627403382338337803782378638743984398639884021402543364432453545364537 
DOI: 10.1111/pre.12538
Yamagishi, T. & Kawai, H. 2012 Cytoskeleton organization during the cell cycle in two stramenopile microalgae, Ochromonas danica (Chrysophyceae) and Heterosigma akashiwo (Raphidophyceae), with special reference to F-actin organization and its role in cytokinesis. Protist, 163, 686-700.
Keywords: Cytokinesis; F-actin; Heterosigma; microtubule; Ochromonas; phalloidin; stramenopiles
Strain(s): 6 
PubMed: 22104586
DOI: 10.1016/j.protis.2011.09.003
Yamagishi, T., Fuchida, S., Katsumata, M., Horie, Y., Mori, F., Kitayama, A., Kawachi, M., Koshikawa, H., Nozaki, T., Kumagai, H., Ishibashi, J-I., Tatarazako, N. 2018 Evaluation of the toxicity of leaches from hydrothermal sulfide deposits by means of a delayed fluorescence-based bioassay with the marine cyanobacterium Cyanobium sp. NIES-981. Ecotoxicology, 27, 1303–1309.
Keywords: Cyanobium sp.; Deep-sea mining; Delayed fluorescence; Ecotoxicological bioassay; Heavy metal
Strain(s): 981 
PubMed: 30311132
DOI: 10.1007/s10646-018-1989-2
Yamagishi, T., Horie, Y., Tatarazako, N. 2017 Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata. Chemosphere, 174, 1-7.
Keywords: Azole fungicide; Clarithromycin; Erythromycin; Isobologram; Ketoconazole; Pseudokirchneriella subcapitata
Strain(s): 35 
PubMed: 28152378
DOI: 10.1016/j.chemosphere.2017.01.071
Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N. 2016 Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981). Ecotoxicology, 25, 1751-1758.
Keywords: Algal growth inhibition test; Cyanobium sp.; Delayed fluorescence; Marine cyanobacteria
Strain(s): 981 
PubMed: 27633095
DOI: 10.1007/s10646-016-1718-7
Yamagishi, T., Kurihara, A., Kawai, H. 2015 A ribbon-like structure in the ejective organelle of the green microalga Pyramimonas parkeae (Prasinophyceae) consists of core histones and polymers containing N-acetyl-glucosamine. Protist, 166, 522-533.
Keywords: Core histone; ejectisome; N-acetyl-glucosamine; Pyramimonas parkeae
Strain(s): 251254 
PubMed: 26398336
DOI: 10.1016/j.protis.2015.08.003
Yamagishi, T., Ota, S., Yamaguchi, H., Koshikawa, H., Tatarazako, N., Yamamoto, H., Kawachi, M. 2019 Ecotoxicological bioassay using marine algae for deep-sea mining. In Environmental Issues of Deep-Sea Mining: Impacts, Consequences and Policy Perspectives, Ed. by Sharma, R., Springer, Cham, pp. 255-271.
Strain(s): 323613969971981100010011310141123042587259026702672 
DOI: 10.1007/978-3-030-12696-4_10
Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017 Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP. PLoS One, 12, e0171259 (article ID).
Strain(s): 35 
PubMed: 28152022
DOI: 10.1371/journal.pone.0171259
Yamagishi, T., Yamaguchi, H., Suzuki, S., Yoshikawa, M., Jameson, I., Lorenz, M., Nobles, D. R., Campbell, C., Seki, M., Kawachi, M., Yamamoto, H. 2020 Comparative genome analysis of test algal strain NIVA-CHL1 (Raphidocelis subcapitata) maintained in microalgal culture collections worldwide. PLoS One, 15, e0241889 (article ID).
Strain(s): 35 
PubMed: 33166324
DOI: 10.1371/journal.pone.0241889
Yamaguchi, H., Arisaka, H., Otsuka, N., Tomaru, Y. 2014 Utilization of phosphate diesters by phosphodiesterase-producing marine diatoms. J. Plankton Res., 36, 281-285.
Keywords: marine diatoms; phosphate diester; phosphodiesterase; phosphorus
Strain(s): 6 
DOI: 10.1093/plankt/fbt091
Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138.
Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure
Strain(s): 7161870 
DOI: 10.1111/j.1440-1835.2008.00493.x
Yamaguchi, H., Nakayama, T., Hongoh, Y., Kawachi, M., Inouye, I. 2014 Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota). J. Plant Res., 127, 241-247.
Keywords: 18S rRNA gene; 16S rRNA gene; Symbiosis; Hatena arenicola; Nephroselmiis; Phylogeny
Strain(s): 9351414141714182864286528662867 
PubMed: 23979010
DOI: 10.1007/s10265-013-0591-1
Yamaguchi, H., Nakayama, T., Murakami, A., Inouye, I. 2010 Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. J. Plant Res., 123, 333-342.
Keywords: Chlorinimonas sublosa gen. et sp. nov.; Phylogeny; Raphidophyceae; Taxonomy; Ultrastructure
Strain(s): 558138018081809 
PubMed: 19946727
DOI: 10.1007/s10265-009-0281-1
Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID).
Strain(s): 981 
PubMed: 27469961
DOI: 10.1128/genomeA.00736-16
Yamaguchi, H., Suda, S., Nakayama, T., Pienaar, RN., Chihara, M., Inouye, I. 2011 Taxonomy of Nephroselmis viridis sp. nov. (Nephroselmidophyceae, Chlorophyta), a sister marine species to freshwater N. olivacea. J. Plant Res., 124, 49-62.
Keywords: 18S rDNA; Intron; Nephroselmis viridis; Phylogeny; Prasinophyceae; Ultrastructure
Strain(s): 486 
PubMed: 20499263
DOI: 10.1007/s10265-010-0349-y
Yamaguchi, H., Sumida, N., Matsukawa, K., Adachi, M., Tomaru, Y., Ishikawa, K., Hotta, J. 2023 Establishment of a simple method for cryopreservation of the marine diatoms, Chaetoceros and Phaeodactylum. J. Appl. Phycol., 33, 2285–2293.
Keywords: CELLBANKER; Cryopreservation; Marine diatoms; Chaetoceros tenuissimus; Phaeodactylum tricornutum; Transgenic diatom
Strain(s): 32437143715 
DOI: 10.1007/s10811-023-03040-w
Yamaguchi, H., Suzuki, S., Kawachi, M. 2018 Draft genome sequence of Microcystis aeruginosa NIES-87, a bloom-forming cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 6, e01596-17 (article ID).
Strain(s): 87 
PubMed: 29472345
DOI: 10.1128/genomeA.01596-17
Yamaguchi, H., Suzuki, S., Kawachi, M. 2020 Draft genome sequences of four Microcystis aeruginosa strains (NIES-3787, NIES-3804, NIES-3806, and NIES-3807) isolated from Lake Kasumigaura, Japan. Microbiol. Resour. Ann.., 9, e00052-20 (article ID).
Strain(s): 3787380438063807 
PubMed: 32241856
DOI: 10.1128/MRA.00052-20
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2018 Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa. J. Genomics, 6, 30-33.
Keywords: algal bloom; cyanobacteria; genome; Microcystis
Strain(s): 2481 
PubMed: 29576807
DOI: 10.7150/jgen.24935
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M. 2020 Genomic characteristics of the toxic bloom-forming cyanobacterium Microcystis aeruginosa NIES-102. J. Genomics, 8, 1-6.
Keywords: algal bloom; cyanobacteria; genome; microcystin; Microcystis aeruginosa; Lake Kasumigaura
Strain(s): 102 
PubMed: 31892993
DOI: 10.7150/jgen.40978
Yamaguchi, H., Suzuki, S., Sano, T., Tanabe, Y., Nakajima, N., Kawachi, M. 2016 Draft genome sequence of Microcystis aeruginosa NIES-98, a non-microcystin-producing cyanobacterium from Lake Kasumigaura, Japan. GenomeA, 4, e01187-16 (article ID).
Strain(s): 98 
PubMed: 27834696
DOI: 10.1128/genomeA.01187-16
Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID).
Strain(s): 2549 
PubMed: 26021928
DOI: 10.1128/genomeA.00551-15
Yamaguchi, H., Zaima, M., Adachi, M., Tomaru, Y., Asahara, H., Nishiwaki, N. 2022 Selective utilization of phosphorus compounds by Chaetoceros tenuissimus (Bacillariophyceae): Approach using 31P nuclear magnetic resonance analysis. Phycol. Res., 70, 151-159.
Strain(s): 3715 
DOI: 10.1111/pre.12485
Yamaguchi, K., Murakami, M., Okino, T. 1989 Screening of angiotensin-converting enzyme inhibitory activities in microalgae. J. Appl. Phycol., 1, 271-275.
Keywords: angiotensin converting enzyme; inhibitor; microalgae; peptide; screening
Strain(s): 14100102104114 
Yamaguchi, M., Ogawa, T., Muramoto, K., Kamio, Y., Jimbo, M., Kamiya, H. 1999 Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis. Biochem. Biophys. Res. Commun., 265, 703-708.
Keywords: Microcystis viridis; lectin; cyanobacterium; mannan-binding lectin; blue-green algae; hemaggulutinin
Strain(s): 102 
DOI: 10.1006/bbrc.1999.1749
Yamaguchi, T., Kobayashi, Y., Adachi, K., Imamura, N. 2003 Argimicins B and C, new anti-cyanobacterial compounds produced by Sphingomonas sp. M-17. J. Antibiot., 56, 655-657.
Strain(s): 4581102230298592 
PubMed: 14513910
DOI: 10.7164/antibiotics.56.655
Yamaki, H., Sitachitta, N., Sano, T., Kaya, K. 2005 Two new chymotrypsin inhibitors isolated from the cyanobacterium Microcystis aeruginosa NIES-88. J. Nat. Prod., 68, 14-18.
Strain(s): 88 
PubMed: 15679310
DOI: 10.1021/np0401361
Yamamoto, H., Fukasawa, Y., Shoji, Y., Hisamoto, S., Kikuchi, T., Takamatsu, A., Iwasaki, H. 2021 Scattered migrating colony formation in the filamentous cyanobacterium, Pseudanabaena sp. NIES-4403. BMC Microbiol., 21, 227 (article ID).
Keywords: Cyanobacteria; Colony pattern formation; Collective behavior; Cell motility
Strain(s): 4403 
PubMed: 34399691
DOI: 10.1186/s12866-021-02183-5
Yamamoto, H., Hada, K., Yamaji, H., Katsuda, T., Ohno, H., Fukuda, H. 2006 Application of regularized alternating least squares and independent component analysis to HPLC-DAD data of Haematococcus pluvialis metabolites. Biochem. Eng. J., 32, 149-156.
Keywords: metabolomics; chemometrics; HPLC-DAD; alternating least squares; regularized term; independent component analysis
Strain(s): 144 
DOI: 10.1016/j.bej.2006.09.014
Yamamoto, H., Nakamura, Y., Nakamura, Y., Kitani, C., Imari, T., Sekizawa, J., Takao, Y., Yamashita, N., Hirai, N., Oda, S., Takarazako, N. 2007 Initial ecological risk assessment of eight selected human pharmaceuticals in Japan. Environ. Sci., 14, 177-193.
Keywords: pharmaceuticals; initial risk assessment; aquatic organisms; predicted no effect concentration
Strain(s): 35 
PubMed: 17762841
Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Matsuzaki, R., Takahashi, F., Nishimura, Y., Kawachi, M., Noguchi, H., Minakuchi, YY., Umen, J. G., Toyoda, A., Nozaki, H. 2021 Three genomes in the algal genus Volvox reveal the fate of a haploid sex-determining region after a transition to homothallism. Proc. Natl. Acad. Sci. U. S. A., 118, e2100712118 (article ID).
Keywords: Volvox; evolution; heterothallism; homothallism; sex
Strain(s): 3780378137823783378437853786 
PubMed: 34011609
DOI: 10.1073/pnas.2100712118
Yamamoto, K., Kawai-Toyooka, H., Hamaji, T., Tsuchikane, Y., Mori, T., Takahashi, F., Sekimoto, H., Ferris, P. J., Nozaki, H. 2017 Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids. PLoS One, 12, e0180313 (article ID).
Strain(s): 37803782378337853786398641104111 
PubMed: 28665990
DOI: 10.1371/journal.pone.0180313
Yamamoto, K., Matsuzaki, R., Mahakham, W., Heman, W., Sekimoto, H., Kawachi, M., Minakuchi, Y., Toyoda, A., Nozaki, H. 2023 Expanded male sex-determining region conserved during the evolution of homothallism in the green alga Volvox. iScience, 26, 106893 (article ID).
Strain(s): 3780378537864468 
PubMed: 37378338
DOI: 10.1016/j.isci.2023.106893
Yamamoto, M., Handa, S., Kawachi, M., Miyamura, S., Nagumo, T., Hirata, A., Kawano, S. 2016 Mother cell wall cleavage during filament formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 35-39.
Keywords: Binary fission; Filament formation; Mother cell wall; Stichococcus; Trebouxiophyceae
Strain(s): 3639 
DOI: 10.1508/cytologia.81.35
Yamamoto, M., Nozaki, H., Kawano, S. 2001 Evolutionary relationships among multiple modes of cell division in the genus Nannochloris (Chlorophyta) revealed by genome size, actin gene multiplicity, and phylogeny. J. Phycol., 37, 106-120.
Keywords: actin gene; autosporulation; binary fission; budding; cell division; Chlorophyta; DNA content; genome size; phylogeny; Nannochloris
Strain(s): 21604016 
DOI: 10.1046/j.1529-8817.2001.037001106.x
Yamamoto, M., Nozaki, H., Miyazawa, Y., Koide, T., Kawano, S. 2003 Relationship between presence of a mother cell wall and speciation in the unicellular microalga Nannochloris (Chlorophyta). J. Phycol., 39, 172-184.
Keywords: 18S rRNA; actin gene; autosporulation; binary fission; budding; Chlorella; Chlorophyta; molecular phylogeny; TBR, tree bisection reconnection
Strain(s): 21602169217321864016 
DOI: 10.1046/j.1529-8817.2003.02052.
Yamamoto, Y. 1972 The fatty acid composition of akinetes, heterocysts and vegetative cells in Anabaena cylindrica. Plant Cell Physiol., 13, 913-915.
Strain(s): 19 
Yamamoto, Y. 1975 Effect of desiccation on the germination of akinetes of Anabaena cylindrica. Plant Cell Physiol., 16, 749-752.
Strain(s): 19 
Yamamoto, Y. 1976 Effect of some physical and chemical factors on the germination of akinates of Anabaena cylindrica. J. Gen. Appl. Microbiol., 22, 311-323.
Strain(s): 19 
DOI: 10.2323/jgam.22.311
Yamamoto, Y. 1978 Detection of algal lysing biological agents in lakes by the soft-agar overlayer technique. Jpn. J. Limnol, 39, 9-14 (in Japanese with English summary).
Strain(s): 19 
Yamamoto, Y. 1981 Observation on the occurrence of microbial agents which cause lysis of blue-green algae in Lake Kasumigaura. Jpn. J. Limnol., 42, 20-27.
Strain(s): 19 
Yamamoto, Y. & Shiah, F.-K. 2010 Relationship between cell growth and frequency of dividing cells of Microcystis aeruginosa. Plankton Benthos Res., 5, 131-135.
Keywords: frequency of dividing cells; incubation experiment; Microcystis aeruginosa; specific growth rate
Strain(s): 1355 
DOI: 10.3800/pbr.5.131
Yamamoto, Y. & Suzuki, K. 1990 Distribution and algal-lysing activity of fruiting myxobacteria in Lake Suwa. J. Phycol., 26, 457-462.
Keywords: algal-lysing activity; cyanobacteria; fruiting myxobacteria
Strain(s): 19404499102112 
DOI: 10.1111/j.0022-3646.1990.00457.x
Yamamoto, Y., Kawashima, D., Hashizume, A., Hisamotsu, M., Isono, N. 2013 Purification and characterization of 1,3-β-D-glucan phosphorylase from Ochromonas danica. Biosci. Biotechnol. Biochem., 77, 130411-130416.
Keywords: 1,3-β-D-glucan phosphorylase; Ochromonas danica; laminarin; laminarioligosaccharides; 1,3-β-D-glucan
Strain(s): 2142 
PubMed: 24018693
DOI: 10.1271/bbb.130411
Yamamoto, Y., Shiah, FK. 2015 Effect of sonication on live and fixed cells of Microcystis aeruginosa. Plankton Benthos Res., 10, 163-166.
Keywords: cell destruction; fixation; Lugol's iodine solution; Microcystis aeruginosa; sonication
Strain(s): 10901157 
DOI: 10.3800/pbr.10.163
Yamane, K., Matsuyama, S., Igarashi, K., Kuwabara, T. 2013 Pyrolytic Generation of Petroleum Crude Oils from the Marine Phytomicroalgal Coccolithophore Emiliania huxleyi (Haptophyta) and Preparation of n-Alkane-Rich Biofuel. Energy Fuels, 27, 7470–7479.
Strain(s): 837 
DOI: 10.1021/ef401618t
Yamane, K., Matsuyama, S., Igarashi, K., Utsumi, M., Shiraiwa, Y., Kuwabara, T. 2013 Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68 ºC enhances generarion of n-alkane-rich biofules after pyrolysis. Appl. Environ. Microbiol., 79, 924-930.
Strain(s): 8372258 
PubMed: 23183975
DOI: 10.1128/AEM.01685-12
Yamano, T. & Fukuzawa, H. 2020 Transformation of the model microalga Chlamydomonas reinhardtii without cell-wall removal. In Electroporation Protocols. Methods in Molecular Biology, Eds. by Li, S., Chang, L., Teissie, J., Humana, New York, NY, 2050, pp. 155-161.
Keywords: Chlamydomonas reinhardtii; Electroporation; Photosynthesis; Protist; Square electric pulse
Strain(s): 2235 
PubMed: 31468489
DOI: 10.1007/978-1-4939-9740-4_16
Yamano, T., Iguchi, H. Fukuzawa, H. 2013 Rapid transformation of Chlamydomonas reinhardtii without cell-wall removal. J. Biosci. Bioeng., 115, 691-694.
Keywords: Chlamydomonas reinhardtii; Electroporation; Square electric pulse; Transformation
Strain(s): 2235 
PubMed: 23333644
DOI: 10.1016/j.jbiosc.2012.12.020
Yamano, T., Miura, K., Fukuzawa, H. 2008 Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 147, 340-354.
Strain(s): 2235 
PubMed: 18322145
DOI: 10.1104/pp.107.114652
Yamano, T., Toyokawa, C., Shimamura, D., Matsuoka, T., Fukuzawa, H. 2021 CO2-dependent migration and relocation of LCIB, a pyrenoid-peripheral protein in Chlamydomonas reinhardtii. Plant Physiol., 188, 1081–1094.
Strain(s): 2235 
PubMed: 34791500
DOI: 10.1093/plphys/kiab528
Yamasaki, Y., Fujita, M., Kawano, S., Baba, T. 2018 Effect of salinity on interspecific competition between the dinoflagellate Alexandrium catenella and the raphidophyte Heterosigma akashiwo. Aquat. Microb. Ecol., 81, 73-82.
Keywords: Allelopathy; Cell contact; Hemolytic activity; Growth inhibition; Heterosigma akashiwo; Alexandrium catenella; Bi-algal culture
Strain(s): 10 
DOI: 10.3354/ame01860
Yamasaki, Y., Hirayama, R., Yamamoto, A., Yuasa, K., Shikata, T. 2022 Effects of micronutrients on the detection of extracellular superoxide produced by the harmful raphidophyte Chattonella antiqua in culture. J. Plankton Res., 44, 36–47.
Keywords: Chattonella; fish mortality; harmful algal bloom; manganese; reactive oxygen species; superoxide
Strain(s): 1 
DOI: 10.1093/plankt/fbab087
Yamasaki, Y., Nagasoe, S., Matsubara, T., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2007 Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo. Mar. Ecol. Prog. Ser., 339, 83-92.
Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition
Strain(s): 10324 
DOI: 10.3354/meps339083
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Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum
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Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum
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Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T. 2010 Species-specific allelopathic effects of the diatom Skeletonema costatum. Thalassas, 27, 21-32.
Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect
Strain(s): 10324 
Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T. 2009 Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community. ISME J., 3, 808-817.
Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum
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Keywords: antibacterial agent; clarithromycin; ecotoxicity; levofloxacin; risk
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Keywords: Multicellularity; Body plan; Embryogenesis; Volvocine green algae; Gonium; Tetrabaena
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Keywords: green algae; Marvania geminata; Nannochloris bacillaris; algal septins; septin phylogeny
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Yancey, C. E., Smith, D. J., Den Uyl, P. A., Mohamed, O. G., Yu, F., Ruberg, S. A., Chaffin, J. D., Goodwin, K. D., Tripathi, A., Sherman, D., Dick, G. J. 2022 Metagenomic and metatranscriptomic insights into population diversity of Microcystis blooms: Spatial and temporal dynamics of mcy genotypes, including a partial operon that can be abundant and expressed. Appl. Environ. Microbiol., 88, e0246421 (article ID).
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Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configuration
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Keywords: antenna pigment; carotenoid; Prasinophyceae; Pterosperma; siphonaxanthin; siphonaxanthin ester
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Keywords: carotenoids; methylation; Nephroselmis; photosynthetic antenna system; Prasinophyceae; siphonaxanthin series
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Keywords: Arthrospira; ggpS; Glucosylglycerol; Osmolyte; Synechococcus
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Keywords: Ciguatera; Gambierdiscus; Growth; Ligh
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PubMed: 18245249
DOI: 10.1128/AEM.02392-07
Ziemert, N., Ishida, K., Weiz, A., Hertweck, C., Dittmann, E. 2010 Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides. Appl. Environ. Microbiol., 76, 3568-3574.
Strain(s): 100101102843 
PubMed: 20363789
DOI: 10.1128/AEM.02858-09
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Chloramphenicol acetyltransferase a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae. Protoplasma, 254, 587-596.
Keywords: Cyanidioschyzon merolae; Chloramphenicol acetyltransferase (CAT) stable genome transformation
Strain(s): 3377 
PubMed: 26715590
DOI: 10.1007/s00709-015-0936-9
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017 Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments. Plant Mol. Biol., 93, 171-183.
Keywords: Stable chloroplast transformation; Cyanidioschyzon merolae; Chloramphenicol acetyltransferase; PEG; Biolistic bombardment
Strain(s): 1332 
PubMed: 27796719
DOI: 10.1007/s11103-016-0554-8
Zienkiewicz, M., Krupnik, T., Drożak, A., Kania, K. 2019 PEG-mediated, stable, nuclear and chloroplast transformation of Cyanidioschizon merolae. Bio-protocol, 9, e3355 (article ID).
Strain(s): 13323377 
DOI: 10.21769/BioProtoc.3355
Zienkiewicz, M., Krupnik, T., Drożak, A., Wasilewska, W., Golke, A., Romanowska, E. 2018 Deletion of psbQ’ gene in Cyanidioschyzon merolae reveals the function of extrinsic PsbQ’ in PSII. Plant Mol. Biol., 96, 135–149.
Keywords: Stable red algae nuclear transformation; DTA toxin; Cyanidioschyzon merolae; Chloramphenicol; acetyltransferase; PEG; PsbQ’; PSII mutants; PSII extrinsic protein deletion
Strain(s): 3377 
PubMed: 29196904
DOI: 10.1007/s11103-017-0685-6
Zongyi, Y., Lu, L., Chen, J., Wei, D. 2018 Effect of crude glycerol on heterotrophic growth of Chlorella pyrenoidosa and Coccomyxa subellipsoidea C-169. J. Appl. Phycol., 30, 2989–2996.
Keywords: Chlorophyceae; Microalgae; Crude glycerol; Heterotrophic growth; Biodiesel
Strain(s): 2166 
DOI: 10.1007/s10811-018-1551-x
Mihirogi, M., Kikuchi, M., Sawai, J. 2012 Development of screening algal growth inhibition test with Dunaliella sp. Jpn. J. Environ. Toxicol., 15, 11-16 (in Japanese with English summary).
Strain(s): 3744 
DOI: 10.11403/jset.15.11
Ueda, R. & MWakisaka, M. 2022 Effect of melatonin as a bio-stimulant of astaxanthin production from Haematococcus. J. Jpn. Inst. Energy, 101, 132-137 (in Japanese with English summary).
Keywords: Astaxanthin; Bio stimulant; Haematococcus lacustris; Melatonin
Strain(s): 144 
DOI: 10.3775/jie.101.132
Nakai, S., Inoue, H., Hosomi, M., Okada, M., Murakami, A. 1995 Control of phytoplankton growth by bioactive compounds extracted from macrophytes. J. Jpn. Soc. Wat. Environ., 18, 1012-1019 (in Japanese with English summary).
Keywords: macrophyte; algae; allelopathy; antialgal bioactive compound; growth inhibition
Strain(s): 3587 
DOI: 10.2965/jswe.18.1012
Nakai, S., Inoue, Y., Lee, B.-D., Hosomi, M. 2002 Inhibitory effects of plant-produced phenols on algal growth. Jpn. J. Limnol., 63, 201-207 (in Japanese with English summary).
Keywords: 藍藻類; シキミ酸代謝経路; フェノール; 多価フェノール; 自動酸化; 増殖抑制
Strain(s): 87 
DOI: 10.3739/rikusui.63.201
Nakai, S., Inoue, Y., Hosomi, M., Murakami, A. 1998 Concurrently inhibitory and allelopathic effects of allelochemicals secreted by Myriophyllum spicatum on growth of blue-green algae. J. Jpn. Soc. Wat. Environ., 21, 663-669 (in Japanese with English summary).
Keywords: allelopathy; algal growth; inhibition; polyphenol; concurrent action; autoxidation
Strain(s): 87 
DOI: 10.2965/jswe.21.663
Nakai, S., Seto, N., Asaoka, S., Okuda, T., Nishijima, W. 2013 Impact of the allelopathic effect of a submerged macrophyte Myriophyllum spicatum on the competition between the cyanobacterium Microcystis aeruginosa and the green alga Scenedesmus obliquus). J. Jpn. Soc. Wat. Environ., 36, 85-90 (in Japanese with English summary).
Keywords: Allelopathy; Cyanobacterium; Dominance prevention; Fatty acid; Polyphenol; Submerged macrophyte
Strain(s): 872279 
DOI: 10.2965/jswe.36.85
Nakamura, M., Yamagiwa, Y., HigashiuraA, N., Tokino, S., Maeda, T. 2018 Fundamental study on application of the newly isolated Euglena to wastewater treatment. Jpn. J. Water Treat. Biol., 54, 39-46 (in Japanese with English summary).
Keywords: Euglena; growth rate; wastewater treatmen
Strain(s): 474849 
DOI: 10.2521/jswtb.54.39
Inoue, A., Ota, S., Matsuzaki, R., Okada, M., Kawachi, M. 2020 Exploration of high oil-producing microalgae strains using a microfluidic chip cell sorter. Jpn. J. Phycol. (Sôrui), 68, 143-152.
Keywords: cell sorting; flow cytometry; on-chip Sort; lipid-producing algae; Nile Red
Strain(s): 2152 
Imai, I., Nishigaki, T., Okamoto, S., Yamamoto, K., Takeuchi, T., Yoshinaga, I., Hirata, H. 2013 Distributions of the algicidal microorganisms against the harmful phytoflagellates in Tanabe Bay (Wakayama Prefecture) and Osaka Bay, Japan. Bull. Fish. Sci. Hokkaido Univ., 63, 23-31 (in Japanese with English summary).
Keywords: Red tide; Prevention; Killer microorganisms; Algicidal bacteria; Ulva pertusa; Seaweed beds; Karenia mikimotoi; Chattonella; Heterosigma
Strain(s): 1 
Nakada, T. 2018 Methods for supporting cover slip during light microscopy of unfixed microalgae, using clothing fibers or adhesive tapes. Jpn. J. Phycol. (Sôrui), 66, 157-163 (in Japanese with English summary).
Keywords: adhesive tape; chemical fiber; light microscopy; microalgae; slide preparation; unfixed cells
Strain(s): 5441849 
Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T. 2016 Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata. J. Jpn. Soc. Wat. Environ., 3, 63-70 (in Japanese with English summary).
Keywords: Green algar; EC50; Toxicity test; Antibacterial substance; Combined toxicity
Strain(s): 35 
DOI: 10.2965/jswe.39.63
Naito, K., Sakai, S., Fujinaga, S., Yoshinaga, I., Tanaka, M. 2014 Evolution of water quality at a tidal flat in the Ariake Sea by Algal Growth Potential test. J. life. Environ. Sci., 6, 17-28 (in Japanese with English summary).
Keywords: Ariake Sea; AGP test; Nutrient; Iron; Microalgae
Strain(s): 1324 
Demura, M. 2020 Biomass productivity and paramylon content of 3 strains of Euglena gracilis. Bull. Fac. Agr., Saga Univ., 105, 1-7 (in Japanese with English summary).
Keywords: Euglena; paramylon; biomass productivity; cost
Strain(s): 474849 
Kato, T., Nakano, K., Sueyoshi, M., Tasaki, M., Kuroiwa, Y. 2020 Large-scale outdoor test of Chlorella culturing in raceway system in the Middle East. Shimizu Kensetsu Kenkyuhokoku, 97, 133-138 (in Japanese with English summary).
Strain(s): 2169 
Handa, S., Horiguchi, T., Ohmura, Y., Higuchi, M. 2013 Rufusiella insignis (Gloeodiniaceae, Phytodiniales), an aerial Dinoflagellate newly found in Japan. Hikobia, 16, 311-314 (in Japanese with English summary).
Strain(s): 4061 
Handa, S., Shoda, I., Mizobuchi, A., Nakahara-Tsubota, M., Tsubota, H. 2014 Trentepohlia bosseae var. samoensis (Trentepohliaceae, Ulvophyceae), an aerial alga newly found in Japan. J. Jpn. Bot., 89, 59-64 (in Japanese with English summary).
Keywords: central pit; green alga: Japan; morphology; new record; Phycopeltis; Printzina; Trentepohlia
Strain(s): 335833593360 
Harada, K. 2022 Elucidation of phenomena involving cyanobacteria in freshwater ecosystem by chemically ecological approach. YAKUGAKU ZASSHI, 142, 39-64 (in Japanese with English summary).
Keywords: chemical ecology; water bloom, β-cyclocitral, density stress, quorum sensing
Strain(s): 102298843 
DOI: 10.1248/yakushi.21-00146
Furusato, E., Asaeda, T., Fukuwatari, T. 2001 Tolerance against prolonged darkness of three freshwater phytoplankton. J. Jpn. Soc. Wat. Environ., 1, 27-34 (in Japanese with English summary).
Keywords: artificial circulation; phytoplankton; dark survival; community succession; Microcystis aeruginosa
Strain(s): 96298 
DOI: 10.2965/jswe.24.27
Koga, T., Kashiwabara, M., Hirakawa, S., Shimizu, N., Ishibashi, Y. 2019 Development of an algal growth inhibition test as small-scale method for testing whole effluent toxicity. J. Environ. Chem., 29, 67-77 (in Japanese with English summary).
Keywords: whole effluent toxicity; algal growth inhibition; small-scale method
Strain(s): 35 
DOI: 10.5985/jec.29.67
Natori, N., Kuwata, M., Tanaka, K., Toda, T. 2023 Plankton survey method based on scanning electron microscopy. Bull. Plankton Soc. Japan, 70, 1-9 (in Japanese with English summary).
Keywords: whole effluent toxicity; drainage management; Raphidocelis subcapitata; johkasou
Strain(s): 2173 
DOI: 10.24763/bpsj.70.1_1
Wada, S. & Natori, K. 2021 Practice of class to measure the environmental load of antibacterial drugs by student planning experiment. -Antibiotics suppress germination and growth of plants- JSSE Research Report, 35, 55-60 (in Japanese).
Strain(s): 35 
DOI: 10.14935/jsser.35.8_55
Wada, S., Kumamoto, T., Yamamoto, Y., Nakasuga, H., Koike, K., Horie, H. 2020 Development of the experimental teaching materials to easily observe the environmental effects of antimicrobaials. JSSE Research Report, 34, 1-15 (in Japanese).
Strain(s): 35 
DOI: 10.14935/jsser.34.7_39
Tsuchiya, R., Kihira, M., Sakanoue, Y., Araki, T. 2018 Assesment of inhibition effect on growth of Microcystis aeruginosa by autoclaved water extracts from leaves of 104 woody plant species. Jpn. J. Limnol., 79, 41-48 (in Japanese with English summary).
Keywords: Microcystis aeruginosa; growth inhibition; leaf extract; woody plants; blue-green algae
Strain(s): 88 
DOI: 10.3739/rikusui.79.41
Sakamoto, M. & Kashiwada, S. 2020 Toxicity of silver nanocolloids to Raphidocelis subcapitata. Jpn. J. Environ. Toxicol., 23, 63-66 (in Japanese with English summary).
Strain(s): 35 
DOI: 10.11403/jset.23.63
Tsutsumi, N., Kikuchi, M., Sawai, J. 2015 Development of algal growth inhibition test with saltwater alga Dunaliella sp. : Toxicity of 39 chemicals. Jpn. J. Environ. Toxicol., 18, 73-83 (in Japanese with English summary).
Keywords: saltwater alga; Dunaliella; herbicide; toxicity; log Pow, susceptibility
Strain(s): 3744 
Sakai, M., Hosoda, A., Kanazawa, S. 2003 Isolation and characterization of two cyanobacteria-lytic bacterial strains from the submerged paddy soil. J. soci. soil. microbiol., 57, 21-28 (in Japanese with English summary).
Keywords: Cyanobacteria; Lytic bacteria; Paddy field; Anabaena
Strain(s): 192337 
DOI: 10.18946/jssm.57.1_21
Ohnishi, Y., Fujii, M., Murashige, S., Yuzawa, A., Miyasaka, H., Suzuki, Y. 2002 Decomposition precess of organic matter in sea water using phytoplankton. I. Effect of the difference in initial concentration of organic matter. Bull. Soc. Sea Water Sci. Jpn., 56, 17-25 (in Japanese with English summary).
Keywords: Initial concentration; Decomposition preocess: Phytoplankton; Particulate organic matter; Dissolved organic matter
Strain(s): 323 
DOI: 10.11457/swsj1965.56.17
Okumura, C., Hasegawa, H., Mizumoto, H., Maki, T., Ueda, K. 2004 Size fractionation of iron compounds in phytoplankton cultures in the presence of chelating ligands. Bunseki Kagaku, 53, 1215-1221 (in Japanese with English summary).
Keywords: iron; speciation; chelating ligands; phytoplankton growth
Strain(s): 324 
DOI: 10.2116/bunsekikagaku.53.1215
Moriya, Y. & Otaki, M. 2016 Inhibition of algal growth in water purification process by UV irradiation and observation of damage level on algal cell. J. Jpn. Soc. Wat. Environ., 39, 91-96 (in Japanese with English summary).
Keywords: Algae; Water purification; Ultraviolet irradiation; Inhibitation
Strain(s): 4532363 
DOI: 10.2965/jswe.39.91

Strain(s): 244714421462160 
Ohara, S., Uehara, T., Kimura, K. Yoshida, T., Fujiwara, S., Mizuguchi, H., Fuse, Y., Yamada, E. 2009 Behavior of humic substances and algal dissolved organic matter as precursors of trihalomethane in Lake Biwa. Bunseki Kagaku, 58, 231-240 (in Japanese with English summary).
Keywords: dissolved organic matter (DOM); humic substances; algal DOM; trihalomethane precursors; Lake Biwa
Strain(s): 109275665 
DOI: 10.2116/bunsekikagaku.58.231
Kojima, Y., Sanae, M., Otsuka, Y., Yasue, T. 2001 Fixation of carbon dioxide and caleification of water concrete using coccolithophorid algae in seawater. J. Soc. Inorganic Materials, Japan, 8, 110-117 (in Japanese with English summary).
Keywords: Coccolithophorid algae; Resource recycling of waste concrete; Coccolith; Calcification; Fixation of carbon dioxide
Strain(s): 353 
DOI: 10.11451/mukimate2000.8.110
Kohira, M., Matsumoto, T., Yamada, Y., Nanba, N., Kado, R. 2017 Effects of hydrogen peroxide on phytoplanktons, seaweed gametophytes, marine harpacticoid copepod and striped barnacle larvae. Sessile Organisms, 34, 1-12 (in Japanese with English summary).
Keywords: hydrogen peroxide; marine ecotoxicity; seaweed gametophytes; phytoplankton; zooplankton
Strain(s): 23532458613751429 
DOI: 10.4282/sosj.34.1
Komatsu, K., Onouchi, H., Imai, A., Kawasaki, N., Hashim, E. F., Mohd Rajuddin, M. K. 2019 Effects of dissolved organic matter in soil extracts on the growth of microalgae. J. Jpn. Soc. Wat. Environ., 42, 239-246 (in Japanese with English summary).
Keywords: Soil extracts; Microalgae; Microplate technique; Excitation emission matrix; Molecular size distribution
Strain(s): 39214521682170225622572258 
DOI: 10.2965/jswe.42.239
Kobayashi, N. & Yukumoto, M. 2017 Improvement of micro algae yield by culture condition optimization. The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary).
Strain(s): 96 
DOI: 10.20550/jiebiomassronbun.12.0_145
Yamashita, N., Tanaka, H., Miyajima, K., Suzuki, Y. 2006 Evaluation of effect of seaage effluent on river water quality using AGP and algal growth inhibition tests. J. JSCE, 62, 191-200 (in Japanese with English summary).
Keywords: AGP test; algal growth inhibition test; sewage effluent; Tama River
Strain(s): 35 
DOI: 10.2208/jscejg.62.191
Yamashita, N., Fukunaga, A., Tanaka, H. 2017 Examination of microplate AGP test using green algae, diatom and blue-green algae and water quality evaluation of river water and treated sewage effluent by AGP test. Environmental science, 30, 250-260 (in Japanese with English summary).
Keywords: Algal growth potential; mircoplate; bioassay; eutrophication; water quality evaluation
Strain(s): 3590805 
DOI: 10.11353/sesj.30.250
Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M. 2004 Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton. Nippon Suisan Gakkaishi, 70, 123-130 (in Japanese with English summary).
Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase
Strain(s): 5324 
DOI: 10.2331/suisan.70.123
Yamasaki, Y., Kameo, S., Wada, Y., Kitatsuji, S., Yuasa, K., Shikata, T. 2023 Toxicological risk assessment of harmful algal species using the rotifer exposure test. Bull. Plankton Soc. Japan, 70, 52-61 (in Japanese with English summary).
Keywords: Brachionus plicatilis; Dinophyceae; harmful algal bloom species; lethal effect on rotifers; Raphidophyceae
Strain(s): 1324 
DOI: 10.24763/bpsj.70.2_52
Okamoto, M., Mori, A., Maeda, A., Sakamoto, S., Yamaguchi, M. 2019 Effects of temperature and salinity on the growth of toxic dinoflagellate Alexandrium ostenfeldii (Dinophyceae). Bull. Tottori Pre. Environ. Sanitation Res. Center, 58, 11-16 (in Japanese with English summary).
Strain(s): 4274 
Iwai, S., Hurukawa, T., Yamane, K., Kawasaki, K., Osakada, K. 2017 Micro-algae cultivation and algae-oil fuel production by enrich CO2 introduction from diesel co-generation system. Transactions of the JSME, 83, 16-00389 (article ID) (in Japanese with English summary).
Keywords: Micro-algae oil; Tri-generation system; Biofuel; CO2
Strain(s): 119 
DOI: 10.1299/transjsme.16-00389
Iwata, Y., Sugahara, I., Kimura, T., Kowa, H., Matsumoto, A., Noritake, K. 2004 Properties of an algicidal bacterium (Flavobacterium sp.) against Karenia mikimotoi isolated from Ise Bay, Japan. Nippon Suisan Gakkaishi, 70, 537-541 (in Japanese with English summary).
Keywords: algicidal bacteria; red tide; Karenia mikimotoi; Flavobacterium
Strain(s): 13532 
DOI: 10.2331/suisan.70.537
Kishi, M., Onouchi, H., Tanaka, K., Yoshida, A., Toda, T. 2021 Simultaneous microalgal culture and biogas upgrading using anaerobic digestion effluent. Bull. Plankton Eco-Eng. Res., 1, 58-73 (in Japanese with English summary).
Strain(s): 2173 
Sako, Y. 2019 Ecophysiological studies of marine microorganisms by genome information. Nippon Suisan Gakkaishi, 85, 281-290 (in Japanese).
Strain(s): 1712293559603670 
DOI: 10.2331/suisan.WA2633

Strain(s): 7533351280516421666167716961723 
DOI: 10.34566/jwwa.88.12_3
Shoji, R., Okita, N., nakanishi, H. 2013 Analysis of the effects of humic acid extracter from the Tama River sediment on the Pseudokirchneriella subcapitata growth inhibition by copper by NICA (non-ideal competitive adsorption)-Donnan model. J. Jpn. Soc. Wat. Environ., 36, 1-9 (in Japanese with English summary).
Keywords: River sediment; Ecotoxicity; Heavy metal
Strain(s): 35 
DOI: 10.2965/jswe.36.1
Oshimi, M., Fujimoto, N., Ohnishi, A., Suzuki, M., Akiba, M., Kunikane, S. 2005 Isolation of bacteria lysing musty odor producing alga Phormidium tenue and its lytic characteristics. J. Jpn. Soc. Wat. Environ., 28, 379-384 (in Japanese with English summary).
Keywords: alga-lytic bacteria; musty odor; Phormidium tenue; Pseudomonas KA6
Strain(s): 96211227244298512817 
DOI: 10.2965/jswe.28.379
Kimura, J. 2011 Screening for allelopathic activity on algal growth. Bull. Hiroshima Pref. Tech. Res. Inst., Publ. Health Environ. Center, 19, 37-46 (in Japanese with English title).
Keywords: Microcystis; Chlorella; Nitzschia; growth inhibition; allelopathy
Strain(s): 88487642 
Matsubara, T., Nagasoe, S., Yamasaki, Y., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2008 Inhibitory effects of centric diatoms on the growth of the dinoflagellate Akashiwo sanguinea. Nippon Suisan Gakkaishi, 74, 598-606 (in Japanese with English summary).
Keywords: Akashiwo sanguinea; allelopathy; growth inhibition; centric diatoms
Strain(s): 324 
DOI: 10.2331/suisan.74.598
Itatsu, Y., Takano, T., Jin, J., Fukutomi, M., Kusui, T. 2015 Ecotoxicological assessment of industrial effluents: Toxicity characterization and impact on receiving water. J. Environ. Chem., 25, 19-26 (in Japanese with English summary).
Keywords: whole effluent toxicity; industrial effluent; toxicity characterization
Strain(s): 35 
DOI: 10.5985/jec.25.19
Nemoto, M. 2021 A comparative gene analysis reveals a diatom-specific SET domain protein family. Scientific Reports of the Faculty of Agriculture, Okayama University, 110, 1-6 (in Japanese with English summary).
Keywords: Biomineralization; Diatom; Silica; Protein
Strain(s): 4871349 
Morita, M., Murayama, K., Komori, K., Minamiyama, M. 2012 Evaluation of levofloxacin in chlorination by algal growth inhibition. J. Environ. Chem., 22, 183-192 (in Japanese with English summary).
Keywords: hydrogen peroxide; marine ecotoxicity; seaweed gametophytes; phytoplankton; zooplankton
Strain(s): 35 
DOI: 10.5985/jec.22.183
Enomoto, J., Kimura, T., Nomura, Y., Kabayama, J., Maita, M. 2013 The safety of febantel for tiger puffer and its environmental impact. Nippon Suisan Gakkaishi, 79, 400-409 (in Japanese with English summary).
Keywords: tiger puffer; febantel; Heterobothrium okamotoi
Strain(s): 324 
DOI: 10.2331/suisan.79.400

Strain(s): 1380 
Takeda, F., Nakano, K., Aikawa, Y., Nishimura, O., Shimada, Y., Fukuro, S., Nakazawa, T., Tanaka, H., Hayashi, N., Inamori, Y. 2014 Analysis of impact of allelopathy by submerged macrophytes simulated by ecosystem model on microalgal biomass and community. J. Jpn. Soc. Wat. Environ., 15, 15-28 (in Japanese with English summary).
Keywords: Allelopathy; Potamogeton pusillus; E cosystem model; M icroalgal community; Cladoceran
Strain(s): 3587 
DOI: 10.2965/jswe.37.15
Takeda, F., Suzuki, M., Okamoto, S., Minamiyama, M. 2018 Evaluation of four types of biological treatment processes in wastewater treatment plants with regard to reducing ability of growth-inhibiting effect on alga in summer and winter and characterization of algal growth-inhibiting chemicals. J. Jpn. Soc. Wat. Environ., 41, 179-191 (in Japanese with English summary).
Keywords: Whole effluent toxicity test; Toxicity identification evaluation; Pseudokirchneriella subcapitata; Wastewater management
Strain(s): 35 
DOI: 10.2965/jswe.41.179
Nagai, T. 2014 河川付着藻類を用いた農薬の毒性試験マニュアル Ver. 1.0 In Research Project for Environmental Risk Assessment of Nutrients and Organochemicals, NIAES, 52 pp (in Japanese).
Strain(s): 71487512797 
Nagai, T. & Kamo, M. 2014 Comparative modeling of the effect of metal mixtures on algal growth using biotic ligand model, concentration additive, and independent action. Jpn. J. Environ. Toxicol., 17, 57-68 (in Japanese with English summary).
Keywords: Zinc; Copper; Cadmium; Metal speciation; Ecological risk assessment
Strain(s): 35 
DOI: 10.11403/jset.17.57
Nagase, T., Okuda, M., Wakabayashi, K. 2008 The investigation of the growth characteristics of phytoplankton, a cause of mildew odor in Lake Koyama. Bull. Tottori Pre. Environ. Sanitation Res. Center, 49, 24-29 (in Japanese with English summary).
Strain(s): 2871 
Kawachi, Y., Tomita, T., Matsunaga, N., Murase, N. 2015 Observation of Spirulina platensis during freeze-thawing for the purpose of establishment of cryopreservation protocol. Cryobiology and Cryotechnology, 61, 65-68 (in Japanese with English summary).
Strain(s): 46 
DOI: 10.20585/cryobolcryotechnol.61.1_65
Fukao, T., Nishijima, T., Yamaguchi, H., Adachi, M. 2007 Utilization of urea by the 6 species of red tide phytoplankton. Bull. Plankton Soc. Japan, 54, 1-8 (in Japanese with English summary).
Keywords: growth; red tide; phytoplankton; urea; uptake kinetics
Strain(s): 16237323324605 
Fukami, K., Matsumoto, J., Kadota, T., Nakano, Y. 2000 Seasonal fluctuations of water quality of deep sea water and the relationship to the growth potential of a microalga. Deep Ocean Water Research, 1, 27-31 (in Japanese with English summary).
Keywords: Deep seawater; water quality; inorganic nutrients; AGP; seasonal fluctuation; upwelling
Strain(s): 324 
DOI: 10.11174/dowas2000.1.1_27
Watanabe, Y. & Sakai, J. 2010 Bioluminescence imaging measurements of osillatory shear flows. J. JSCE, 66, 71-75 (in Japanese with English summary).
Strain(s): 609 
DOI: 10.2208/kaigan.66.71
Mizobuchi, A., Tsuchioka, H., Handa, S. 2021 Cryptophyte Urgorri complanatus causes red tides in brackish waters in Japan. Jpn. J. Phycol. (Sôrui), 69, 10-13 (in Japanese with English summary).
Keywords: bloom; Cryptophyta; plankton; pyrenoids; tidal area
Strain(s): 4402 
Hamasaki, A. 2017 Study of the optimal cultivation for micro-algae. The 12th Conference on Biomass Science, 27-28 (in Japanese with English summary).
Strain(s): 226 
DOI: 10.20550/jiebiomassronbun.12.0_27
Makino, I., Yahagi, Y. 2014 Relationship between growing number of river water quality and cyanobacteria by blue-green in lake. J. Environ. Safety, 5, 19-25 (in Japanese with English summary).
Keywords: sightseeing-related facilities; Microcystis aeruginosa; river water quality; fishing; fishing bait
Strain(s): 1144 
DOI: 10.11162/daikankyo.14G0102
Makino, I. & Yahagi, Y. 2016 Invasion course of Anabaena and Microcystis in the catchment area. J. Environ. Safety, 7, 213-219 (in Japanese with English summary).
Keywords: Blue-green algal; Anabaena; Microcystis; genetic analysis; fish pond
Strain(s): 8231164 
DOI: 10.11162/daikankyo.16G0701
Hatakeyama, S. 2006 Assessment of overall herbicide effects on river ecosystems through periphyton and aquatic plants. Jpn. J. Environ. Toxicol., 9, 51-60 (in Japanese with English title).
Strain(s): 35 
DOI: 10.11403/jset.9.51
Shiraiwa, Y., Inouye, I., Ishida, K. 2014 放射性同位元素の除去剤および除去方法 In Nippon-koku Tokkyo-chô (JP), Kôkai Tokkyo Kôhô (A), Tokukai2014-6051, 30 pp.
Strain(s): 2854285528562857285828592860 
Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Kobayashi, K., Takabatake, H., Yamashita, N., Tanaka, H. 2015 Evalutation of toxicity reduction of treated wastewater by NF and RO membrane technologies based on algal growth inhibition test and short term toxicity test on embryo and sac-fry stages of Medaka. J. Jpn. Soc. Civill Engineers, Ser. G (Environmental Research), 71, III 179-III 187(in Japanese with English summary).
Keywords: bioassay; nanofiltration membrane; reclaimed water; reverse osmosis membrane; toxicity
Strain(s): 35 
DOI: 10.2208/jscejer.71.III_179
Ishihara, S. 2008 Development of risk assessment pocedure for evaluating effect of herbicides on primary productivity of river ecosystem. Bull. Nat. Inst. Agro-Env. Sci., 25, 1-92 (in Japanese with English summary).
Strain(s): 27172718271927202721272227232724272527262727272827292730273127322733 
Ishihara, S., Horio, T., Kobara, Y., Yokoyama, A. 2006 Evaluation of herbicide effects on microalgal cells by flow cytometric analysis. J. Weed Sci. Tech., 51, 239-248 (in Japanese with English summary).
Keywords: herbicide; flow cytometry; algae; morphological change; recoverability; ecological risk assessment
Strain(s): 71230 
DOI: 10.3719/weed.51.239
Ishihara, S., Horio, T., Kobara, Y., Yokoyama, A., Mayama, S. 2006 Development of a growth inhibition test method using fresh water attached diatoms. Jpn. J. Environ. Toxicol., 9, 101-113 (in Japanese with English summary).
Keywords: attached diatom; growth inhibition test; herbicide; ecological risk assessment
Strain(s): 712717271827192720272127222724272527262727272827292730273127322733 
DOI: 10.11403/jset.9.101

Strain(s): 395 
Ishida, Y. & MKadota, H. 1983 The so-called freshwater red tide Uroglena americana in Lake Biwa. Seikatsu Eisei, 27, 236-248 (in Japanese).
Strain(s): 395 
Ishifuji, S., Sato, Y., Imae, H., Takaara, T., Sano, D., Masago, Y., Omura, T. 2010 Identification of Coagulation Inhibitor Proteins from Microcystis aeruginosa. J. Jpn. Soc. Wat. Environ., 33, 73-79 (in Japanese with English summary).
Keywords: Microcystis aeruginosa; coagulation inhibition; phage display; polyaluminum chloride; protein
Strain(s): 91 
DOI: 10.2965/jswe.33.73
Fukuzaki, K., Naito, K., Yoshioka, T., Sawayama, S., Imai, I. 2011 Effects of humic substances on the growth of the harmful Raphidophyte Chattonella antiqua. Bull. Fish. Sci. Hokkaido Univ., 61, 23-28 (in Japanese with English summary).
Keywords: Chattonella antiqua; Humic substance; Iron; Artificial medium; Culture experiment
Strain(s): 1 
Sasao, A., Matsuo, H., Tanaka, Y. 2001 Inhibitory effect of tea (Camellia sinessis (L.) O.Kuntze var. sinensis) liquor / extract on blue-green algal growth. Jpn. J. Limnol., 62, 115-122 (in Japanese with English summary).
Keywords: tea; M. aeruginosa; growth inhibitor; tannic acid
Strain(s): 35 
DOI: 10.3739/rikusui.62.115
Shinohara, A., Imai, A., Komatsu, K., Matsushige, K., Nara, F. 2008 Application of HPLC-PAD to highly sensitive analysis of dissolved carbohydrates and theit composition in lake water and extracellular organic matter derived from algae. J. Jpn. Soc. Wat. Environ., 31, 447-454 (in Japanese with English summary).
Keywords: carbohydrates; DOM; HPLC-PAD; lake water; algal culture
Strain(s): 4474204 
DOI: 10.2965/jswe.31.447
Shikata, T., Sakurada, K., Jomoto, Y., Oyama, N., Onji, M., Yoshida, M., Ohwada, K. 2011 Growth dynamics of Chattonella antiqua in relation to nutrients in the Yatsushiro Sea. Nippon Suisan Gakkaishi, 77, 40-52 (in Japanese with English summary).
Keywords: Chattonella; red tide; nutrient; nitrogen; iron; bioassay; Yatsushiro Sea; phosphate
Strain(s): 1 
DOI: 10.2331/suisan.77.40
Watanuki, T. 1994 Response to salt stress of Antarctic Dunaliella, as measured by nuclear magnetic resonance spectroscopy. JSMRM, 5, 118-120 (in Japanese).
Keywords: antarctic; Dunaliella; high salt lake; salt stress; NMR; glycerol
Strain(s): 3744 
Watanuki, T. 1998 Organisms as measured by nuclear magnetic resonance spectrometer. Bull. Kanagawa P. H. Lab., 28, 1-15 (in Japanese).
Keywords: 1H-NMR; 13C-NMR; 31P-NMR; 137Cs-NMR
Strain(s): 3744 
Watanuki, T., Matsushita, K., Kato, K. 1993 Response of Antarctic alga to salt stress, as measured by nuclear magnetic resonance spectroscopy. Seibutsu-Butsuri, 33, 38-41 (in Japanese).
Strain(s): 3744 
DOI: 10.2142/biophys.33.228
Watanuki, T., Iijima, I., Matsushita, K., Nishina, M., Sumiya, K., Kato, K. 1996 Incorporation of 13C labelled carbon into glycerol in the halotolerant alga Dunaliella. JSMRM, 7, 109-112 (in Japanese).
Keywords: halotolerant species; 13C-enriched sodium bicarbonate; glycerol
Strain(s): 3744 
Watanuki, T., Matsushita, K., Nishina, M., Hori, E., Kato, K. 1994 J. Phys. Fit. Nutr. Immunol., 40-44 (in Japanese).
Strain(s): 3744 
Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T. 2016 Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples. Sessile Organisms, 33, 38-43 (in Japanese with English summary).
Keywords: Residual chlorine; DPD; Seawater; Coscinodiscus wailesii
Strain(s): 15237323 
DOI: 10.4282/sosj.33.38
Yachi, S., Nagai, T., Katsumata, M. 2016 Variation in delayed fluorescence of green algae and diatom during the exposure and a subsequent recovery period. Jpn. J. Environ. Toxicol., 19, 35-46 (in Japanese with English summary).
Keywords: Recovery test; Physiological state of algae; 3,5-DCP
Strain(s): 35 
DOI: 10.11403/jset.19.35
Tanioka, Y. 2019 Food chemistry and physiological function of pseudovitamin B12. Vitamins (Japan), 93, 47-51 (in Japanese with English summary).
Keywords: pseudovitamin B12; corrinoid compounds; cyanobacteria; meheionine synthase; shellfish
Strain(s): 39 
DOI: 10.20632/vso.93.2_47
Adachi, Y., Yokoyama, S.-I., Tanahashi, M. 2017 Development of antibacterial and antialgae product using wood biomass distillation (II). Bull. Ind. Technol. Center Gifu Prefectural Govt., 11, 9-11 (in Japanese).
Strain(s): 31227 
Tuji, A. & Niiyama, Y. 2018 The taxonomy of Pseudanabaena(Cyanobacteria) and characters for Jjudging the production of odor compounds. Jpn. J. Water Treat. Biol., 54, 115-120 (in Japanese with English summary).
Keywords: 2-MIB; L/W ratio; Phormidium tenue; pigment; Pseudanabaena
Strain(s): 5124059406240634064406542374238 
DOI: 10.2521/jswtb.54.115
Nogami, R., Ushijima, K., Nishida, H., Wakisaka, M. 2017 Enhancement of growth and lipid production of Botryococcus braunii by steel slags. J. Jpn. Inst. Energy, 96, 372-375 (in Japanese with English summary).
Keywords: Botryococcus braunii; Blast furnace slag; Growth promotion; Lipid production; Steelmaking slag
Strain(s): 2199 
DOI: 10.3775/jie.96.372
Nozaki, H., Sano, S., Tezuka, Y., Ooyabu, K. 2020 Morphology and taxonomy of a species of Volvox (Chlorophyceae) from Chiba Prefecture, Japan. Jpn. J. Phycol. (Sôrui), 68, 153-156 (in Japanese with English summary).
Keywords: asexual spheroid; molecular phylogeny; monoicous species; morphology; sexual spheroid; taxonomy; Volvox; Volvox ferrisii; Volvox sect; Volvox
Strain(s): 4465 
Kaneko, H. 1997 Toxicity of municipal waste incinerator fly ash using algal growth. J. Jpn.n Soc. Waste Management Experts, b>8, 321-326 (in Japanese with English summary).
Keywords: MWI fly ash; leaching test; ecotoxicity; algal assay; heavy metal
Strain(s): 35 
DOI: 10.3985/jswme.8.321
Kaneko, H., Takeuchi, H., Hirayama, K. 2000 Development of short-term algal toxicity test using oxygen evolution rate. Jpn. J. Environ. Toxicol., 3, 3-9 (in Japanese with English summary).
Keywords: algal toxicity test; oxygen evolution; short-term bioassay; sensitivity
Strain(s): 35 
DOI: 10.11403/jset.3.3
Suzuki, Y. & Hirayama, S. 2019 Development of rapid and simple bioassay using seaweed Pyropia yezoensis.. J. JIME, 54, 898-904 (in Japanese with English summary).
Strain(s): 16 
DOI: 10.5988/jime.54.898
Sekimoto, H. 2012 Speciation and reproductive isolation in unicellular charophycean alga, Closterium peraceroum-strigosum-littorale complex. IFO Res. Commun., 26, 71-85 (in Japanese with English summary).
Keywords: Closterium: heterothallism; homothallism; reproductive isolation; sex pheromone
Strain(s): 58596061626364656768697026145484551 
Yukino, T., Hayashi, M., Inoue, Y., Imamura, J., Nagano, N., Murata, H. 2005 Preparation of docosahexaenoic acid fortified Spirulina platensis and its lipid and fatty acid compositions. Nippon Suisan Gakkaishi, 71, 74-79 (in Japanese with English summary).
Keywords: docosahexaenoic acid; DHA; Spirulina; foods with function claims
Strain(s): 39 
DOI: 10.2331/suisan.71.74
Suda, S. 2008 Isolation, cultivation and phylogenetic studies of microalgae, particularly prasinophytes from coastal waters of the Nansei Islands, Japan. IFO Res. Commun., 22, 53-62 (in Japanese with English summary).
Keywords: microalgae; picoeukaryotic plankton; prasinophytes; Ryukyu Islands; zooxanthellae
Strain(s): 25272528252925302531 
Nagasoe, S., Suzuki, K., Yurimoto, T., Fuseya, R., Fukao, T., Yamatogi, T., Kimoto, K., Maeno, Y. 2011 Clearance effects of the Pacific oyster Crassostrea gigas on the fish-killing algae Chattonella marina and Chattonella antiqua. Aquat. Biol., 11, 201-211.
Keywords: Clearance rate; Raphidophyte; Harmful algae; Chattonella spp.
Strain(s): 26592660 
DOI: 10.3354/ab00295
Karitani, Y., Yamada, R., MatsumotoT., Ogino, H. 2024 UV mutagenesis improves growth potential of green algae in a green algae–yeast co‑culture system. Arch. Microbiol., 206, 61 (article ID).
Keywords: Chlamydomonas reinhardtii; Co-cultivation; Photosynthesis; Saccharomyces cerevisiae; Mutagenesis; Transcriptome analysis
Strain(s): 2238 
PubMed: 38216809
DOI: 10.1007/s00203-023-03796-2
Kodama, Y. & Endoh, Y. 2024 Comparative analyses of the symbiotic associations of the host Paramecium bursaria with free-living and native symbiotic species of Chlorella. Curr. Microbiol., 81, 66 (article ID).
Strain(s): 2169 
PubMed: 38231280
DOI: 10.1007/s00284-023-03590-9
Hosoda, K., Seno, S., MurakamiN., Matsuda, H., Osada, Y., Kamiura, R., Kondoh, M. 2024 Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Biosystems, 235, 105087 (article ID).
Keywords: Synthetic ecosystem; Experimental model ecosystem; Microbial microcosm; Machine learning
Strain(s): 21352272236 
PubMed: 37989470
DOI: 10.1016/j.biosystems.2023.105087
Wijesinghe, A., Senevirathna, M. D. H. J., Fujino, T. 2023 Egeria densa organic extracts: an eco-friendly approach to suppress Microcystis aeruginosa growth through allelopathy. Water Sci. Technol., 88, 2955–2973.
Keywords: allelopathy; cyanobacteria; growth inhibition; macrophytes; plant extracts
Strain(s): 111 
PubMed: 38096081
DOI: 10.2166/wst.2023.387
Kurtović, K., Schmidt, V., Nehasilová, M., Vosolsobĕ, S., Petrášek, J. 2023 Rediscovering Chara as a model organism for molecular and evo‑devo studies. Protoplasma, 261, 183-196.
Keywords: Chara; Plant evolution; Model plants; Charophytesas
Strain(s): 1604 
PubMed: 37880545
DOI: 10.1007/s00709-023-01900-3
Nagi, G. K., Goel, M., Tiwari, R., Bhawna, Gaur, S., Mallick, N., Mandal, S. 2023 Simultaneous production of bio-crude bio-oil via hydrothermal liquefaction and carotenoids via supercritical extraction from Nannochloropsis oceanica and recycling effluent to establish circular processes. J. Clean Prod., 428, 13945 (article ID).
Keywords: Algal biofuels; Biorefinery; Circular bioeconomy; Hydrothermal liquefaction; Microalgae; Nannochloropsis oceanica
Strain(s): 2145 
DOI: 10.1016/j.jclepro.2023.139450
Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY. 2017 Acidophilic green algal genome provides insights into adaptation to an acidic environment. Proc. Natl. Acad. Sci. U. S. A., 114, E8304–E8313.
Keywords: acidic environment; acidophilic alga; comparative genomics; comparative transcriptomics; environmental adaptation
Strain(s): 2499 
PubMed: 28893987
DOI: 10.1073/pnas.1707072114
Carrillo-Carrasco, V. P., Hernandez-Garcia, J., Weijers, D. 2023 Electroporation-based delivery of proteins in Peniummargaritaceum and other zygnematophycean algae. Physiol. Plant., 175, e1412 (article ID).
Strain(s): 67217 
PubMed: 38148204
DOI: 10.1111/ppl.14121
Takusagawa, M., Misumi, O., Nozaki, H., Kato, S., Maruyama, S., Tsujimoto-Inui, Y., Yagisawa, F., Ohnuma, M., Kuroiwa, H, Kuroiwa, T., Matsunaga, S. 2024 Complete mitochondrial and chloroplast DNA sequences of the freshwater green microalga Medakamo hakoo. Genes Genet. Syst., 98, 353-360.
Keywords: mitochondria; chloroplast; organelle genome; Trebouxiophyceae
Strain(s): 4000 
PubMed: 38267054
DOI: 10.1266/ggs.23-00275
Glass, S. E., McCourt, R. M., Gottschalk, S. D., Lewis, L. A., Karol, K. G. 2023 Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum. J. Phycol., 59, 1133-1146.
Keywords: algae; Charophyta; cryptic species; Entransia; green algae; Hormidiella; Interfilum; Klebsormidium; Streptosarcina; systematics
Strain(s): 477 
PubMed: 37548118
DOI: 10.1111/jpy.13359
Shiraishi, H., Sasase, M., Nakashima, A. S. 2024 Helicoid morphology of Arthrospira platensis NIES-39 confers temperature compensation in the longitudinal movement velocity of its trichomes. Phycology, 4, 104-116.
Keywords: Arthrospira platensis; cell movement; cyanobacteria; gliding motility; helix; multicellularity; spirulina; temperature compensation
Strain(s): 39 
DOI: 10.3390/phycology4010006
Wang, K., Li, w., Cui, H., Qin, S. 2023 Phylogenetic analysis and characterization of diguanylate cyclase and phosphodiesterase in planktonic filamentous cyanobacterium Arthrospira sp. Int. J. Mol. Sci., 24, 15210 (article ID).
Keywords: c-di-GMP; Arthrospira; diguanylate cyclase; phosphodiesterase; riboswitch
Strain(s): 39 
PubMed: 37894891
DOI: 10.3390/ijms242015210
Kato, K., Hamaguchi, T., Kumazawa, M., Nakajima, Y., Ifuku, K., Hirooka, S., Hirose, Y., Miyagishima, S., Suzuki, T., Kawakami, K., Dohmae, N., Yonekura, K., Shen, J.-R., Nagao, R. 2024 The structure of PSI-LHCI from Cyanidium caldarium provides evolutionary insights into conservation and diversity of red-lineage LHCs. Proc. Natl. Acad. Sci. U. S. A., 121, e2319658121 (article ID).
Keywords: light-harvesting complex; photosynthesis; photosystem; red alga
Strain(s): 2137 
PubMed: 38442179
DOI: 10.1073/pnas.2319658121
Tsai, K.-P., Kirschman, Z. A., Moldaenke, C., Chaffin, J. D., McClure, A., Seo, Y., Bridgeman, T. B. 2024 Field and laboratory studies of fluorescence-based technologies for real-time tracking of cyanobacterial cell lysis and potential microcystins release. Sci. Total Environ., 920, 171121 (article ID).
Keywords: Cyanobacterial bloom; Cell lysis; Extracellular microcystin; Unbound phycocyanin; Early warning system; Drinking water treatment
Strain(s): 298 
PubMed: 38382604
DOI: 10.1016/j.scitotenv.2024.171121
Zhang, K., Wan, M., Bai, W., Bao, Z., Duan, X., Wang, W., Fan, F., Li, Y. 2024 A novel heterotrophic cultivation process of Euglena gracilis based on NaCl stress significantly increases the paramylon production. Algal Res., 78, 103391 (article ID).
Strain(s): 48 
DOI: 10.1016/j.algal.2024.103391

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