Search Reference

Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 A protein binding to an upstream sequence of ftsZ involved in coordination of DNA replication and cell division in Microcystis aeruginosa. Fish. Sci., 78, 375-379.
Keywords: Cyanobacteria; Microcystis; Cell division; DNA replication; ftsZ
Strain(s): 298 
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2012 Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures. Appl. Environ. Microbiol., 78, 5353-5360.
Strain(s): 87102298 
PubMed: 22636003
DOI: 10.1128/AEM.00626-12
Yabuki, A., Ishida, K-I. 2011 Mataza hastifera n. g., n. sp.: a possible new lineage in the Thecofilosea (Cercozoa). J. Eucaryot. Microbiol., 58, 94-102.
Keywords: Cryomonadida; Cryothecomonas; environmental sequence; extrusome; phylogeny; Protaspis; taxonomy; ultrastructure
Strain(s): 2568 
Yabuki, A., Nakayama, T., Yubuki, N., Hashimoto, T., Ishida, K-I. Inagaki, Y. 2011 Tsukubamonas globosa n. gen., n. sp., a novel excavate flagellate possibly holding a key for the early evolution in "Discoba". J. Eucaryot. Microbiol., 58, 319-331.
Keywords: Flagellar apparatus; heteroloboseans; jakobids; multigene phylogeny; taxonomy; ultrastructure
Strain(s): 1390 
Yagawa, Y., Aizawa, K., Yang, S.-Y., Miyachi, S. 1986 Release of carbonic anhydrase from the cell surface of Chlamydomonas reinhardtii by trypsin. Plant Cell Physiol., 27, 215-221.
Keywords: carbonic anhydrase; cell surface; Chlamydomonas reinhardtii; trypsin treatment
Strain(s): 2235 
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. I. Purification and properties of the enzyme. Plant Cell Physiol., 28, 1253-1262.
Keywords: carbonic anhydrase; chloride ion-activation; Porphyridium cruentum
Strain(s): 2138 
Yagawa, Y., Muto, S., Miyachi, S. 1987 Carbonic anhydrase of a unicellular red alga Porphyridium cruentum R-1. II. Distribution and role in photosynthesis. Plant Cell Physiol., 28, 1509-1516.
Keywords: anti-Porphyridium carbonic anhydrase antibody; carbonic anhydrase; immunogold electron microscopy; intracellular distribution; Porphyridium cruentum
Strain(s): 2138 
Yagawa, Y., Muto, S., Miyachi, S. 1988 Carbonic anhydrase of Chlamydomonas reinhardtii. Cellular distribution and subunit constitution in two strains. Plant Cell Physiol., 29, 185-188.
Keywords: carbonic anhydrase (cellular distribution); Chlamydomonas
Strain(s): 2235 
Yagawa, Y., Shiraiwa, Y., Miyachi, S. 1984 Carbonic anhydrase from the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 25, 775-783.
Keywords: Anabaena variabilis; blue-green alga; carbonic anhydrase (EC4.2.1.1); cyanobacterium; enzyme purification
Strain(s): 2093 
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1984 Growth characteristics of axenic and unialgal Microcystis isolated from Lake Kasumigaura. Jpn. J. Water Poll. Res., 7, 496-503 (in Japanese with English summary).
Keywords: Microcystis; bacteria; growth; axenic; algae
Strain(s): 478604 
Yagi, O., Hagiwara, T., Takamura, Y., Sudo, R. 1987 Limiting nutrients of algal growth in Lake Kasumigaura. Jpn. J. Water Poll. Res., 10, 115-122 (in Japanese with English summary).
Keywords: Microcystis; blue-green algae; nutrients; algal growth potential
Strain(s): 35478 
Yagi, O., Ohkubo, N., Tomioka, N., Okada, M. 1989 Limiting nutrients of algal growth in Ushiku Marsh. Jpn. J. Limnol., 50, 139-148 (in Japanese with English summary).
Keywords: algal growth potential; Microcystis; Selenastrum; nutrient
Strain(s): 35478 
Yagi, O., Sudo, R., Imaoka, T., Teranishi, S. 1984 Algal growth potential on munisipal wastewater using red tide organisms. Res. Rep. Natl. Inst. Environ. Stud., No. 63, 231-242 (in Japanese with English summary).
Strain(s): 35 
Yagisawa, F., Nishida, K., Yoshida, M., Ohnuma, N., Shimada, T., Fujiwara, T., Yoshida, Y., Misumi, O., Kuroiwa, H., Kuroiwa, T. 2009 Identification of novel proteins in isolated polyphosphate vacuoles in the primitive red alga Cyanidioschyzon merolae. Plant J., 60, 882-893.
Keywords: polyphosphate; vacuole; primitive; Cyanidioschyzon; isolation; mass spectrometry (MS)
Strain(s): 3377 
PubMed: 19709388
DOI: 10.1111/j.1365-313X.2009.04008.x
Yamada, E., Hirota, T., Hatori, N., Kitao, Y., Fuse, Y., Aoki, S., Karatani, H., Matsunaga, T. 2012 Characterization of protein-like fluorophores released from lake phytoplankton on the basis of fractionation and electrophoresis. Anal. Sci., 28, 595-600.
Strain(s): 109275665 
Yamada, E., Ohara, S., Uehara, T., Hirota, T., Hatori, N., Fuse, Y., Aoki, S. 2012 Biodegradation of dissolved organic matter (DOM) released from phytoplankton in Lake Biwa. Anal. Sci., 28, 675-681.
Strain(s): 109275665 
Yamada, K., Moriyama, R., Hatano, S. 1987 Production of osmotically labile cells in Chlorella ellipsoidea C-27 and C-102 by enzyme treatment. Agric. Biol. Chem., 51, 579-580.
Strain(s): 2170 
Yamada, M., Katsuki, E., Otsubo, M., Kawaguchi, M., Ichimi, K., Keriyama, H., Tada, K., Harrison, P. J. 2010 Species diversity of the genus Skeltonema (Bacillariophyceae) in the Industrial Harbor Dokai Bay, Japan. J. Oceanogr., 66, 755-771.
Keywords: Skeletonema; species diversity; isolation characteristics; Dokai Bay; LSU rDNA; SSU rDNA; SEM
Strain(s): 2837283828392841284228432844 
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1985 Studies on earthy-musty odor in natural water (1). Growth characteristics and 2-methylisoborneol production of Phormidium tenue. Jpn. J. Water Poll. Res., 8, 515-521 (in Japanese with English summary).
Keywords: blue-green algae; Phormidium tenue; growth characteristics; headspace-GC analysis; 2-methylisoborneol
Strain(s): 512 
Yamada, N., Aoyama, K., Yamada, M., Hamamura, N. 1986 Studies on earthy-musty odor in natural water (3). Isolation of bacteria-free Phormidium tenue and the effect of associated bacteria on the growth of axenic P. tenue. Jpn. J. Water Poll. Res., 9, 379-385 (in Japanese with English summary).
Keywords: Phormidium tenue; axenic; growth; 2-methylisoborneol; bacteria interaction
Strain(s): 512 
Yamada, T. K., Miyaji, K., Nozaki, H. 2008 A taxonomic study of Eudorina unicocca (Volvocaceae, Chlorophyceae) and related species, based on morphology and molecular phylogeny. Eur. J. Phycol., 43, 317-326.
Keywords: aplanosporic strain; Eudorina unicocca; Eudorina peripheralis stat. nov.; Chlorophyceae; molecular phylogeny; morphology; taxonomy; Volvocales; Yamagishiella
Strain(s): 57866671772272372472572687087218581859 
Yamada, T. K., Tsuchikane, Y., Wu, J.-T., Sekimoto, H., Miyaji, K., Nozaki, H. 2008 Morphology and molecular phylogeny of Eudorina sp. (Volvocaceae, Chlorophyceae) from Taiwan. Hikobia, 15, 135-143.
Keywords: Eudorina elegans; Eudorina minodii; Eudorina unicocca; Eudorina peripheralis; Chlorophyceae; molecular phylogeny; morpholohy; taxsonomy; Volvocales
Strain(s): 724725726185827342735 
Yamada, T., Nakada, T., Miyaji, K., Nozaki, H. 2006 Morphology and molecular phylogeny of Gonium multicoccum (Volvocales, Chlorophyceae) newly found in Japan. J. Jpn. Bot., 81, 139-147.
Keywords: Chlorophyceae; Gonium multicoccum; ITS2; rbcL; Volvocales
Strain(s): 103817071708170917111713 
Yamada, T., Sakaguchi, K. 1981 Protoplast induction in Chlorella species. Agric. Biol. Chem., 45, 1905-1909.
Strain(s): 6852160216521702189 
Yamada, T., Sakaguchi, K. 1982 Comparative studies on Chlorella cell walls: Induction of protoplast formation. Arch. Mikrobiol., 132, 10-13.
Strain(s): 2276862159216321662168217121892352 
Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N. 2016 Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981). Ecotoxicology, 25, 1751-1758.
Keywords: Algal growth inhibition test; Cyanobium sp.; Delayed fluorescence; Marine cyanobacteria
Strain(s): 981 
DOI: 10.1007/s10646-016-1718-7
Yamagishi, T., Kawai, H. 2012 Cytoskeleton organization during the cell cycle in two stramenopile microalgae, Ochromonas danica (Chrysophyceae) and Heterosigma akashiwo (Raphidophyceae), with special reference to F-actin organization and its role in cytokinesis. Protist, 163, 686-700.
Keywords: Cytokinesis; F-actin; Heterosigma; microtubule; Ochromonas; phalloidin; stramenopiles
Strain(s): 6 
PubMed: 22104586
DOI: 10.1016/j.protis.2011.09.003
Yamagishi, T., Kurihara, A., Kawai, H. 2015 A ribbon-like structure in the ejective organelle of the green microalga Pyramimonas parkeae (Prasinophyceae) consists of core histones and polymers containing N-acetyl-glucosamine. Protist, 166, 522-533.
Keywords: Core histone; ejectisome; N-acetyl-glucosamine; Pyramimonas parkeae
Strain(s): 251254 
PubMed: 26398336
DOI: 10.1016/j.protis.2015.08.003
Yamaguchi, H., Arisaka, H., Otsuka, N., Tomaru, Y. 2014 Utilization of phosphate diesters by phosphodiesterase-producing marine diatoms. J. Plankton Res., 36, 281-285.
Keywords: marine diatoms; phosphate diester; phosphodiesterase; phosphorus
Strain(s): 6 
DOI: 10.1093/plankt/fbt091
Yamaguchi, H., Hoppenrath, M., Takishita, K., Horiguchi, T. 2008 Haramonas pauciplastida sp. nov. (Raphidophyceae, Heterokontophyta) and phylogenetic analyses of Haramonas species using small subunit ribosomal RNA gene sequences. Phycol. Res., 56, 127-138.
Keywords: Haramonas pauciplastida sp. nov.; phylogeny; Raphidophyceae; small subunit rDNA; taxonomy; ultrastructure
Strain(s): 7161870 
DOI: 10.1111/j.1440-1835.2008.00493.x
Yamaguchi, H., Nakayama, T., Hongoh, Y., Kawachi, M., Inouye, I. 2014 Molecular diversity of endosymbiotic Nephroselmis (Nephroselmidophyceae) in Hatena arenicola (Katablepharidophycota). J. Plant Res., 127, 241-247.
Keywords: 18S rRNA gene; 16S rRNA gene; Symbiosis; Hatena arenicola; Nephroselmiis; Phylogeny
Strain(s): 286428652866 
DOI: 10.1007/s10265-013-0591-1
Yamaguchi, H., Nakayama, T., Murakami, A., Inouye, I. 2010 Phylogeny and taxonomy of the Raphidophyceae (Heterokontophyta) and Chlorinimonas sublosa gen. et sp. nov., a new marine sand-dwelling raphidophyte. J. Plant Res., 123, 333-342.
Keywords: Chlorinimonas sublosa gen. et sp. nov.; Phylogeny; Raphidophyceae; Taxonomy; Ultrastructure
Strain(s): 558138018081809 
PubMed: 19946727
DOI: 10.1007/s10265-009-0281-1
Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID).
Strain(s): 981 
DOI: 10.1128/genomeA.00736-16
Yamaguchi, H., Suda, S., Nakayama, T., Pienaar, RN., Chihara, M., Inouye, I. 2011 Taxonomy of Nephroselmis viridis sp. nov. (Nephroselmidophyceae, Chlorophyta), a sister marine species to freshwater N. olivacea. J. Plant Res., 124, 49-62.
Keywords: 18S rDNA; Intron; Nephroselmis viridis; Phylogeny; Prasinophyceae; Ultrastructure
Strain(s): 486 
PubMed: 20499263
Yamaguchi, H., Suzuki, S., Tanabe, Y., Osana, Y., Shimura, Y., Ishida, K-I., Kawachi, M. 2015 Complete genome sequence of Microcystis aeruginosa NIES-2549, a bloom-forming cyanobacterium from lake Kasumigaura, Japan. GenomeA, 3, e00551-15 (article ID).
Strain(s): 2549 
DOI: 10.1128/genomeA.00551-15
Yamaguchi, H., Tanimoto, Y., Yoshimatsu, T., Sato, S., Nishimura, T., Uehara, K., Adachi, M. 2012 Culture method and growth characteristics of marine benthic dinoflagellate Ostreopsis spp. isolated from Japanese coastal waters. Fish. Sci., 78, 993-1000.
Keywords: Culture method; Growth characteristics; Ostreopsis; Palytoxin
Strain(s): 3353 
Yamaguchi, K., Murakami, M., Okino, T. 1989 Screening of angiotensin-converting enzyme inhibitory activities in microalgae. J. Appl. Phycol., 1, 271-275.
Keywords: angiotensin converting enzyme; inhibitor; microalgae; peptide; screening
Strain(s): 14100102104114 
Yamaguchi, M., Ogawa, T., Muramoto, K., Kamio, Y., Jimbo, M., Kamiya, H. 1999 Isolation and characterization of a mannan-binding lectin from the freshwater cyanobacterium (blue-green algae) Microcystis viridis. Biochem. Biophys. Res. Commun., 265, 703-708.
Keywords: Microcystis viridis; lectin; cyanobacterium; mannan-binding lectin; blue-green algae; hemaggulutinin
Strain(s): 102 
Yamaguchi, T., Kobayashi, Y., Adachi, K., Imamura, N. 2003 Argimicins B and C, new anti-cyanobacterial compounds produced by Sphingomonas sp. M-17. J. Antibiot., 56, 655-657.
Strain(s): 4581102230298592 
Yamaki, H., Sitachitta, N., Sano, T., Kaya, K. 2005 Two new chymotrypsin inhibitors isolated from the cyanobacterium Microcystis aeruginosa NIES-88. J. Nat. Prod., 68, 14-18.
Strain(s): 88 
Yamamoto, H., Hada, K., Yamaji, H., Katsuda, T., Ohno, H., Fukuda, H. 2006 Application of regularized alternating least squares and independent component analysis to HPLC-DAD data of Haematococcus pluvialis metabolites. Biochem. Eng. J., 32, 149-156.
Keywords: metabolomics; chemometrics; HPLC-DAD; alternating least squares; regularized term; independent component analysis
Strain(s): 144 
Yamamoto, H., Nakamura, Y., Nakamura, Y., Kitani, C., Imari, T., Sekizawa, J., Takao, Y., Yamashita, N., Hirai, N., Oda, S., Takarazako, N. 2007 Initial ecological risk assessment of eight selected human pharmaceuticals in Japan. Environ. Sci., 14, 177-193.
Keywords: pharmaceuticals; initial risk assessment; aquatic organisms; predicted no effect concentration
Strain(s): 35 
Yamamoto, M., Handa, S., Kawachi, M., Miyamura, S., Nagumo, T., Hirata, A., Kawano, S. 2016 Mother cell wall cleavage during filament formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 35-39.
Keywords: Binary fission; Filament formation; Mother cell wall; Stichococcus; Trebouxiophyceae
Strain(s): 3639 
DOI: 10.1508/cytologia.81.35
Yamamoto, M., Nozaki, H., Kawano, S. 2001 Evolutionary relationships among multiple modes of cell division in the genus Nannochloris (Chlorophyta) revealed by genome size, actin gene multiplicity, and phylogeny. J. Phycol., 37, 106-120.
Keywords: actin gene; autosporulation; binary fission; budding; cell division; Chlorophyta; DNA content; genome size; phylogeny; Nannochloris
Strain(s): 2160 
DOI: 10.1046/j.1529-8817.2001.037001106.x
Yamamoto, M., Nozaki, H., Miyazawa, Y., Koide, T., Kawano, S. 2003 Relationship between presence of a mother cell wall and speciation in the unicellular microalga Nannochloris (Chlorophyta). J. Phycol., 39, 172-184.
Keywords: 18S rRNA; actin gene; autosporulation; binary fission; budding; Chlorella; Chlorophyta; molecular phylogeny; TBR, tree bisection reconnection
Strain(s): 2160216921732186 
DOI: 10.1046/j.1529-8817.2003.02052.
Yamamoto, Y. 1972 The fatty acid composition of akinetes, heterocysts and vegetative cells in Anabaena cylindrica. Plant Cell Physiol., 13, 913-915.
Strain(s): 19 
Yamamoto, Y. 1975 Effect of desiccation on the germination of akinetes of Anabaena cylindrica. Plant Cell Physiol., 16, 749-752.
Strain(s): 19 
Yamamoto, Y. 1976 Effect of some physical and chemical factors on the germination of akinates of Anabaena cylindrica. J. Gen. Appl. Microbiol., 22, 311-323.
Strain(s): 19 
Yamamoto, Y. 1978 Detection of algal lysing biological agents in lakes by the soft-agar overlayer technique. Jpn. J. Limnol, 39, 9-14 (in Japanese with English summary).
Strain(s): 19 
Yamamoto, Y. 1981 Observation on the occurrence of microbial agents which cause lysis of blue-green algae in Lake Kasumigaura. Jpn. J. Limnol., 42, 20-27.
Strain(s): 19 
Yamamoto, Y., Kawashima, D., Hashizume, A., Hisamotsu, M., Isono, N. 2013 Purification and characterization of 1,3-β-D-glucan phosphorylase from Ochromonas danica. Biosci. Biotechnol. Biochem., 77, 130411-130416.
Keywords: 1,3-β-D-glucan phosphorylase; Ochromonas danica; laminarin; laminarioligosaccharides; 1,3-β-D-glucan
Strain(s): 2142 
DOI: 10.1271/bbb.130411
Yamamoto, Y., Shiah, F.-K. 2010 Relationship between cell growth and frequency of dividing cells of Microcystis aeruginosa. Plankton Benthos Res., 5, 131-135.
Keywords: frequency of dividing cells; incubation experiment; Microcystis aeruginosa; specific growth rate
Strain(s): 1355 
Yamamoto, Y., Shiah, FK. 2015 Effect of sonication on live and fixed cells of Microcystis aeruginosa. Plankton Benthos Res., 10, 163-166.
Keywords: cell destruction; fixation; Lugol's iodine solution; Microcystis aeruginosa; sonication
Strain(s): 10901157 
DOI: 10.3800/pbr.10.163
Yamamoto, Y., Suzuki, K. 1990 Distribution and algal-lysing activity of fruiting myxobacteria in Lake Suwa. J. Phycol., 26, 457-462.
Keywords: algal-lysing activity; cyanobacteria; fruiting myxobacteria
Strain(s): 19404499102112 
Yamane, K., Matsuyama, S., Igarashi, K., Kuwabara, T. 2013 Pyrolytic Generation of Petroleum Crude Oils from the Marine Phytomicroalgal Coccolithophore Emiliania huxleyi (Haptophyta) and Preparation of n-Alkane-Rich Biofuel. Energy Fuels, 27, 7470–7479.
Strain(s): 837 
Yamane, K., Matsuyama, S., Igarashi, K., Utsumi, M., Shiraiwa, Y., Kuwabara, T. 2013 Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68 ºC enhances generarion of n-alkane-rich biofules after pyrolysis. Appl. Environ. Microbiol., 79, 924-930.
Strain(s): 8372258 
PubMed: 23183975
DOI: 10.1128/AEM.01685-12
Yamano, T., Iguchi, H. Fukuzawa, H. 2013 Rapid transformation of Chlamydomonas reinhardtii without cell-wall removal. J. Biosci. Bioeng., 115, 691-694.
Keywords: Chlamydomonas reinhardtii; Electroporation; Square electric pulse; Transformation
Strain(s): 2235 
DOI: 10.1016/j.jbiosc.2012.12.020
Yamano, T., Miura, K., Fukuzawa, H. 2008 Expression analysis of genes associated with the induction of the carbon-concentrating mechanism in Chlamydomonas reinhardtii. Plant Physiol., 147, 340-354.
Strain(s): 2235 
DOI: 10.1104/pp.107.114652
Yamasaki, Y., Nagasoe, S., Matsubara, T., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2007 Allelopathic interactions between the bacillariophyte Skeletonema costatum and the raphidophyte Heterosigma akashiwo. Mar. Ecol. Prog. Ser., 339, 83-92.
Keywords: Allelopathy; Bacillariophyceae; Skeletonema costatum; Raphidophyceae; Heterosigma akashiwo; Bi-algal culture; Growth inhibition
Strain(s): 10324 
Yamasaki, Y., Nagasoe, S., Tameishi, M., Shikata, T., Zou, Y., Jiang, Z., Matsubara, T., Shimasaki, Y., Yamaguchi, K., Oshima, Y., Honjo, T. 2010 The role of interactions between Prorocentrum minimum and Heterosigma akashiwo in bloom formation. Hydrobiologia, 641, 33-44.
Keywords: Allelopathy; growth and interaction; Heterosigma akashiwo; Prorocentrum minimum; Reactive oxygen species; Skeletonema costatum
Strain(s): 110324 
Yamasaki, Y., Ohmichi, Y., Hirose, M., Shikata, T., Shimasaki, Y., Oshima, Y., Honjo, T. 2012 Low molecular weight allelochemicals produced by the diatom, Skeletonema costatum. Thalassas, 28, 9-17.
Keywords: Allelochemicals; Diatom; Growth inhibition; Heterosigma akashiwo; Raphidophyt; Skeletonema costatum
Strain(s): 10324 
Yamasaki, Y., Ohmichi, Y., Shikata, T., Hirose, M., Shimasaki, Y., Oshima, Y., Honjo, T. 2010 Species-specific allelopathic effects of the diatom Skeletonema costatum. Thalassas, 27, 21-32.
Keywords: Allelopathy; growth inhibition; growth promotion; Heterosigma akashiwo; low molecular weight allelochemicals; Skeletonema costatum; species-specific effect
Strain(s): 10324 
Yamasaki, Y., Shikata, T., Nukata, A., Ichiki, S., Nagasoe, S., Matsubara, T., Shimasaki, Y., Nakao, M., Yamaguchi, K., Oshima, Y., Oda, T., Ito, M., Jenkinson, I. R., Asakawa, M., Honjo, T. 2009 Extracellular polysaccharide-protein complexes of a harmful alga mediate the allelopathic control it exerts within the phytoplankton community. ISME Journal, 3, 808-817.
Keywords: allelopathy; growth inhibition; growth stimulation; harmful algal blooms (HABs); Heterosigma akashiwo; Skeletonema costatum
Strain(s): 10324 
DOI: 10.1038/ismej.2009.24
Yamashita, N., Yasojima, M., Nakada, N., Miyajima, K., Komori, K., Suzuki, Y., Tanaka, H. 2006 Effects of antibacterial agents, levofloxacin and clarithromycin, on aquatic organisms. Water Sci. Technol., 53, 65-72.
Keywords: antibacterial agent; clarithromycin; ecotoxicity; levofloxacin; risk
Strain(s): 35 
Yamatogi, T., Miyahara, J., Tanaka, J. 1996 Preculture of noxious red tide flagellate Chattonella antiqua (Raphidophyceae) for AGP assay. Bull. Nagasaki Pref. Inst. Fish., 22, 7-13 (in Japanese with English summary).
Strain(s): 1 
Yamazaki, T; Hirai, C; Ota, S; Kuwano, K; Kawano, S. 2014 Use of FM1-43, a membrane-specific fluorescent dye, to estimate plasma membrane integrity in the cryopreservation of green algae. CryoLetters, 35, 180-187.
Keywords: FM1-43, cryopreservation, two-step freezing, plasma membrane, green algae, Parachlorella kessleri
Strain(s): 2152 
Yamochi, S. 1983 Mechanisms for outbreak of Heterosigma akashiwo red tide in Osaka Bay, Japan. Part 1. Nutrient factors involved in controlling the growth of Heterosigma akashiwo Hada. J. Oceanogr. Soc. Japan, 39, 310-316.
Strain(s): 6 
Yanagida, Y. 1992 An assay system for detecting the effects of weed killers, by using the green microalga Scenedesmus quadricauda [Bisyô ryokusô Scenedesmus quadricauda wo mochiita josôzai no eikyôhyôkahô nitsuite]. Report of Freshwater Fisheries Experiment Station Ibaraki Prefecture, No. 28, 124-127 (in Japanese without English title).
Strain(s): 96 
Yang, EC., Boo, GH., Kim, HJ., Cho, SM., Boo, SM., Andersen, R. A., Yoon, HS. 2012 Supermatrix data highlight the phylogenetic relationships of photosynthetic Stramenopiles. Protist, 163, 217-231.
Keywords: Heterokont algae; molecular phylogenetic analysis; multigene phylogeny; reduced flagellar clade; stramenochromes
Strain(s): 29362271618631864 
PubMed: 22001261
DOI: 10.1016/j.protis.2011.08.001
Yang, S.-Y., Tsuzuki, M., Miyachi, S. 1985 Carbonic anhydrase of Chlamydomonas: Pulification and studies on its induction using antiserum against Chlamydomonas carbonic anhydrase. Plant Cell Physiol., 26, 25-34.
Keywords: affinity chromatography; carbon dioxide concentration; carbonic anhydrase; Chlamydomonas reinhardtii; enzyme induction
Strain(s): 2235 
Yang, Y., Maruyama S., Sekimoto, H., Sakayama, H., Nozaki, H. 2011 An extended phylogenetic analysis reveals ancient origin of “non-green" phosphoribulokinase genes from two lineages of "green” secondary photosynthetic eukaryotes: Euglenophyta and Chlorarachniophyta. BMC Research Notes, 4, 330 (article ID).
Strain(s): 381 
Yao, Y., Ujiie, Y., Watanabe, M., Yagi, O., Takamura, Y. 1998 Protein phosphatase ihnibition assay for detection of microcystins in lake water and Microcystis cultures. Mircob. Environ., 13, 149-157.
Strain(s): 107010911107 
Yasumoto, K., Nishigami, A., Aoi, H., Tsuchihashi, C., Kasai, F., Kusumi, T., Ooi, T. 2008 Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defence of a phytoplankton - Part 2. Chem. Pharm. Bull., 56, 129-132.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configuration
Strain(s): 802 
Yasumoto, K., Nishigami, A., Aoi, H., Tsuchihashi, C., Kasai, F., Kusumi, T., Ooi, T. 2008 Isolation of new aliphatic sulfates and sulfamate as the Daphnia kairomones inducing morphological change of a phytoplankton Scenedesmus gutwinskii. Chem. Pharm. Bull., 56, 133-136.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; aliphatic sulfamate
Strain(s): 802 
Yasumoto, K., Nishigami, A., Kasai, F., Kusumi, T., Ooi, T. 2006 Isolation and absolute configuration determination of aliphatic sulfates as the Daphnia kairomones inducing morphological defense of a phytoplankton. Chem. Pharm. Bull., 54, 271-274.
Keywords: Daphnia kairomone; Scenedesmus; aliphatic sulfate; absolute configulation
Strain(s): 802 
Yasumoto, K., Nishigami, A., Yasumoto, M., Kasai, F., Okada, Y., Kusumi, T., Ooi, T. 2005 Aliphatic sulfates released from Daphnia induce morphologiral defense of phytoplankton: isolation and synthesis of kairomones. Tetrahedron Letters , 46, 4765-4767.
Keywords: kairomonda; phytoplankton; Daphnia; Scenedesmus; aliphatic sulfate
Strain(s): 802 
Yasumoto, T. 1992 Toxin of the marine micro-algae [Kaiyô bisaisôrui no Tokishin]. BIO Medica, 7, 57-62 (in Japanese without English title).
Strain(s): 161215369 
Yokono, M., Murakami, A., Akimoto, S. 2011 Excitation energy transfer between photosystem II and photosystem I in red algae: larger amounts of phycobilisome enhance spillover. Biochim. Biophys. Acta, 1807, 847-853.
Keywords: spillover; red algae; delayed fluorescence; phycobilisome; red chlorophyll
Strain(s): 2138 
Yokota, A., Kitaoka, S. 1986 A method for determination of glyoxylate with pumpkin isocitrate lyase and its application to photosynthesizing Euglena gracilis Z. Plant Sci., 46, 97-101.
Keywords: determination of glyoxylate; pumpkin isocitrate lyase; Euglena gracilis
Strain(s): 48 
Yokota, A., Kitaoka, S. 1987 Rates of glycolate synthesis and metabolism during photosynthesis of Euglena and microalgae grown on low CO2. Planta, 170, 181-189.
Keywords: aminooxyacetate; Chlorophyta (microalgae); CO2-concentrating mechanism; cyanobacteria; Euglena; glycolate excretion; photosynthesis (CO2-concentrating mechanism)
Strain(s): 48 
Yokota, A., Kitaoka, S. 1987 The mechanism of induction of glycolate excretion by aminooxyacetate in low CO2-grown Euglena gracilis Z. Agric. Biol. Chem., 51, 665-670.
Strain(s): 48 
Yokoyama, A., Takahashi, F., Kataoka, H., Hara, Y., Nozaki, H. 2011 Evolutionary analysis of the nuclear-encoded photosynthetic gene psbO from tertiary plastid-containing algae in Dinophyta. J. Phycol., 47, 407-414.
Keywords: diatoms; Dinophyta; endosymbiosis; Haptophyta; N-terminal region; phylogeny; plastid; psbO genes
Strain(s): 274712 
Yongmanitchai, W., Ward, O. P. 1991 Screening of algae for potential alternative sources of eicosapentaenoic acid. Phytochemistry, 30, 2963-2967.
Keywords: algae; Thailand; w-3 fatty acids; linolenic acid; eicosapentaenoic acid; docosahexaenoic acid
Strain(s): 22562258 
Yoo, J. J., Choi, S. P., Kim, B. W., Sim, S. J. 2012 Optimal design of scalable photo-bioreactor for phototropic culturing of Haematococcus pluvialis. Bioprocess. Biosyst. Eng., 35, 309-315.
Keywords: Photo-bioreactor; Haematococcus pluvialis; Astaxanthin; Improved factors; Mixing
Strain(s): 144 
DOI: 10.1007/s00449-011-0616-x
Yoo, J. J., Choi, S. P., Kim, J. Y. H., Chang, W. S., Sim, S. J. 2013 Development of thin-film photo-bioreactor and its application to outdoor culture of microalgae. Bioprocess. Biosyst. Eng., 36, 729-736.
Keywords: Photo-bioreactor; Microalgae; Haematococcus pluvialis; Scale-up; Outdoor
Strain(s): 144 
Yoshida, M., Noël, M.-H., Nakayama, T., Naganuma, T., Inouye, I. 2006 A haptophyte bearing siliceous scales: ultrastructure and phylogenetic position of Hyalolithus neolepis gen. et sp. nov. (Prymnesiophyceae, Haptophyta). Protist, 157, 213-234.
Keywords: biomineralization; silica; Prymnesium; Chrysochromulina; 18S rDNA; rbcL
Strain(s): 1393 
Yoshida, M., Yoshida, T., Satomi, M., Takashima, Y., Hosoda, N., Hiroishi, S. 2008 Intra-specific phenotypic and genotypic variation in toxic cyanobacterial Microcystis aeruginosa. J. Appl. Phycol., 105, 407-415.
Keywords: API ZYM; diversity; microcystin; Microcystis; phylogeny; population; taxonomy; toxic; cyanobacteria
Strain(s): 101102103112298604105510581062107010911105 
Yoshida, M., Yoshida, T., Takashima, Y., Hosoda, N., Hiroishi, S. 2007 Dynamics of microcystin-producing and non-producing Microcystis populations is correlated with nitrate concentration in a Japanese lake. FEMS Microbiol. Lett., 266, 49-53.
Keywords: microcystin; Microcystis; peptide synthetase; population dynamics; real-time PCR; toxic cyanobacteria
Strain(s): 298 
Yoshida, M., Yoshida, T., Yoshida-Takashima, Y., Kashima, A., Hiroishi, S. 2010 Real-time PCR detection of host-mediated cyanophage gene transcripts during infection of a natural Microcystis aeruginosa population. Microbes. Environ., 25, 211-215.
Keywords: cyanophage; Microcystis aeruginosa; real-time RT-PCR; succession; toxic cyanobacteria
Strain(s): 298 
Yoshida, T., Ancajas, R. R. 1970 Application of the acetylene reduction method in nitrogen fixation studies. Soil Sci. & Plant Nutr., 16, 234-237.
Strain(s): 37 
Yoshida, T., Maki, M., Okamoto, H., Hiroishi, S. 2005 Coordination of DNA replication and cell division in cyanobacteria Microcystis aeruginosa. FEMS Microbiol. Lett., 251, 149-154.
Keywords: cyanobacteria; cell division; DNA replication; FtsZ; Microcystis
Strain(s): 298 
Yoshida, T., Nagasaki, K., Takashima, Y., Shirai, Y., Tomaru, Y., Takao, Y., Sakamoto, S., Hiroishi, S., Ogata, H. 2008 Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies. J. Bacteriol., 190, 1762-1772.
Strain(s): 298 
Yoshida, T., Nakai, R., Seto, H., Wang, M.-K., Iwataki, M., Hiroishi, S. 2003 Production of superoxide anion and hydrogen peroxide associated with cell growth of Chattonella antiqua. Microbes. Environ., 18, 216-222.
Keywords: dinoflagellate; Heterocapsa circularisquama; internal transcribed spacer; ITS; red tide
Strain(s): 472474614 
Yoshida, T., Sakamoto, T. 2009 Water-stress induced trehalose accumulation and control of trehalase in the cyanobacterium Nostoc punctiforme IAM M-15. J. Gen. Appl. Microbiol., 55, 135-145.
Keywords: compatible solute, desiccation tolerance, post-translational regulation, terrestrial cyanobacterium
Strain(s): 2108 
DOI: 10.2323/jgam.55.135
Yoshida, T., Takashima, Y., Tomaru Y., Shirai, Y., Takao, Y., Hiroishi, S., Nagasaki, K. 2006 Isolation and characterization of a cyanophage infecting the toxic cyanobacterium Microcystis aeruginosa. Appl. Environ. Microbiol., 72, 1239-1247.
Strain(s): 44879098102104111112298604 
Yoshida, T., Yuki, Y., Lei, S., Chinen, H., Yoshida, M., Kondo, R., Hiroishi, S. 2003 Quantitative detection of toxic strains of the cyanobacterial genus Microcystis by competitive PCR. Microbes. Environ., 18, 16-23.
Keywords: competitive PCR; microcystin; Microcystis; peptide synthetase; toxic cyanobacteria
Strain(s): 87888990102104105106108109110111112298299604 
Yoshida, Y., Fujiwara, T., Imoto, Y., Yoshida, M., Ohnuma, M., Hirooka, S., Misumi, O., Kuroiwa, H., Kato, S., Matsunaga, S., Kuroiwa, T. 2013 The kinesin-like protein TOP promotes Aurora localisation and induces mitochondrial, chloroplast and nuclear division. J. Cell Sci., 126, 2392-2400.
Keywords: Cell-division cycle, Cyanidioschyzon merolae; Kinesin; Mitochondrial division; Plastid division
Strain(s): 3377 
PubMed: 23549784
DOI: 10.1242/jcs.116798
Yoshida, Y., Kuroiwa, H., Hirooka, S., Fujiwara, T., Ohnuma, M., Yoshida, M., Misumi, O., Kawano, S., Kuroiwa, T. 2009 The bacterial ZapA-like protein ZED is required for mitochondrial division. Curr. Biol., 19, 1491-1497.
Strain(s): 3377 
PubMed: 19699094
DOI: 10.1016/j.cub.2009.07.035
Yoshida, Y., Kuroiwa, H., Misumi, O., Yoshida, M., Ohnuma, M., Fujiwara, T., Yagisawa, F., Hirooka, S., Imoto, Y., Matsushita, K., Kawano, S., Kuroiwa, T. 2010 Chloroplasts divide by contraction of a bundle of nanofilaments consisting of polyglucan. Science, 329, 949-953.
Strain(s): 3377 
PubMed: 20724635
DOI: 10.1126/science.1190791
Yoshida, Y., Miyagishima, S.-Y., Kuroiwa H., Kuroiwa, T. 2012 The plastid-dividing machinery: formation, constriction and fission. Curr. Opin. Plant Biol., 15, 714-721.
Strain(s): 3377 
PubMed: 22824141
DOI: 10.1016/j.pbi.2012.07.002
Yoshii, Y., Takaichi, S., Maoka, T., Hanada, S., Inouye, I. 2002 Characterization of two unique carotenoid fatty acid esters from Pterosperma cristatum (Prasinophyceae, Chlorophyta). J. Phycol., 38, 297-303.
Keywords: antenna pigment; carotenoid; Prasinophyceae; Pterosperma; siphonaxanthin; siphonaxanthin ester
Strain(s): 936 
Yoshii, Y., Takaichi, S., Maoka, T., Inouye, I. 2003 Photosynthetic pigment composition in the primitive green alga Mesostigma viride (Prasinophyceae): phylogenetic and evolutionary implications. J. Phycol., 39, 570-576.
Keywords: abscisic acid; carotenoid; Mesostigma; neoxanthin; siphonaxanthin; siphonaxanthin ester
Strain(s): 296475476477 
Yoshii, Y., Takaichi, S., Maoka, T., Suda, S., Sekiguchi, H., Nakayama, T., Inouye, I. 2005 Variation of siphonaxanthin series among the genus Nephroselmis (Prasinophyceae, Chlorophyta), including a novel primary methoxy carotenoid. J. Phycol., 41, 827-834.
Keywords: carotenoids; methylation; Nephroselmis; photosynthetic antenna system; Prasinophyceae; siphonaxanthin series
Strain(s): 2524834869349352309 
Yoshikawa, K., Aikawa, S., Kojima, Y., Toya, Y., Furusawa, C., Kondo, A., Shimizu, H. 2015 Construction of a genome-scale metabolic model of Arthrospira platensis NIES-39 and metabolic design for cyanobacterial bioproduction. PLoS One, 10, e0144430 (article ID).
Strain(s): 39 
DOI: 10.1371/journal.pone.0144430
Yoshikawa, S., Suzuki, T., Watanabe, M., Iseki, M. 2005 Kinetic analysis of the activation of photoactivated adenylyl cyclase (PAC), a blue-light receptor for photomovements of Euglena. Photochem. Photobiol. Sci., 4, 727-731.
Strain(s): 48 
Yoshikawa, T., Ikeda, Y., Sakata, T., Maeda, H. 2011 Cloning and analysis of the ggpS gene from cyanobacteria Arthrospira spp. involved in the synthesis of an osmolyte glucosylglycerol. Biocontrol Science, 16, 55-61.
Keywords: Arthrospira; ggpS; Glucosylglycerol; Osmolyte; Synechococcus
Strain(s): 39 
Yoshimura, S., Ranjbar, R., Inoue, R., Katsuda, T., Katoh, S. 2006 Effective utilization of transmitted light for astaxanthin production by Haematococcus pluvialis. J. Biosci. Bioeng., 102, 97-101.
Keywords: astaxanthin; Haematococcus pluvialis; transmitted light; physiological response
Strain(s): 144 
Yoshioka, S., Taniguchi, F., Miura, K., Inoue, T., Yamano, T., Fukuzawa, H. 2004 The novel Myb transcription factor LCR1 regulates the CO2-responsive gene Cah1, encoding a periplasmic carbonic anhydrase in Chlamydomonas reinhardtii. Plant Cell, 16, 1466-1477.
Strain(s): 2235 
PubMed: 15155888
DOI: 10.1105/tpc.021162
Yoshizako, F., Nishimura, A., Chubachi, M. 1992 Microbial reduction of cyclohexanone by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 74, 395-397.
Strain(s): 226 
Yoshizako, F., Nishimura, A., Chubachi, M. 1994 Identification of algal transformation products from alicyclic ketones. J. Ferment. Bioeng., 77, 144-147.
Strain(s): 226 
Yoshizako, F., Nishimura, A., Chubachi, M., Horii, T., Ueno, T. 1991 Bioconversion of cyclohexaneacetic acid to monohydroxycyclo-hexaneacetic acids by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 72, 343-346.
Strain(s): 226227 
Yoshizako, F., Ogino, M., Nishimura, A., Chubachi, M., Horii, T. 1995 Biotransformation of cyclic β-keto esters by Chlorella pyrenoidosa Chick. J. Ferment. Bioeng., 79, 141-145.
Keywords: Chlorella pyrenoidosa Chick; cyclic β-keto esters; biotransformation; alkoxycarbolyl group elimination; carbonyl group reduction
Strain(s): 226 
Yuasa, T., Horiguchi, T., Mayama, S., Takahashi, O. 2016 Gymnoxanthella radiolariae gen. et sp. nov. (Dinophyceae), a dinoflagellate symbiont from solitary polycystine radiolarians. J. Phycol., 52, 89-104.
Keywords: dinoflagellate; Gymnoxanthella radiolariae gen. et sp. nov.; molecular phylogeny; radiolarians; symbiont; Zooxanthella nutricula
Strain(s): 3649 
DOI: 10.1111/jpy.12371
Yubuki, N., Inagaki, Y., Nakayama, T., Inouye, I. 2007 Ultrastructure and ribosomal RNA phylogeny of the free-living heterotrophic flagellate Dysnectes brevis n.gen., n.sp., a new member of the Fornicata. J. Eucaryot. Microbiol., 54, 191-200.
Keywords: amitochondriate; Carpediemonas membranifera; diplomonads; Excavata; microaerophilic; retortamonads; typical excavates
Strain(s): 1843 
DOI: 10.1111/j.1550-7408.2007.00252.x
Yubuki, N., Nakayama, T., Inouye, I. 2008 A unique life cycle and perennation in a colorless chrysophyte Spumella sp. J. Phycol., 44, 164-172.
Keywords: cannibalism; Chrysophyceae; colorless chrysophyte; doubling time; growth rate; heterotrophic flagellate
Strain(s): 1846 
Yuki, Y., Yoshida, T., Hiroishi, S. 2002 Molecular detection of the toxic cyanobacteria [Yûdoku aoko no bunshi-shikibetsu to yosatsu he-no ôyô]. In Series of Fisheries Science Vol. 143, Prevention and Extermination Strategies of Harmful Algal Blooms [Suisan-gaku shirîzu 134, Yûgai-yûdoku sôrui burûmu no yobô to kujo] , Eds. by Hiroishi, S., Imai, I. & Ishimaru, T., Koseisha-Koseikaku, Tokyo, p. 43-53 (in Japanese without English title).
Strain(s): 738187888990919899100101102104105106108109110111112204230298299604 
Yuki-jirushi [Snow Brand] Milk Products Co.Ltd., Showa Denko K.K. 1992 Separation and purification of useful substances from Euglena [Euglena kara no yûyô-busshitsu no Bunri Seisei]. In The Advanced Technology of the Separation and Purification of the Materials for Physiologically Functional Foods and Their Development [Kinôsei Shokuhin Sozai no Kôdo Bunri Seisei to Kaihatsu], Ed. and published by The Japanese Research and Development Association for the High Separation System in Food Industry [Shokuhin Sangyô Hai-separêshon Sisutemu Gijutu Kenkyû Kumiai], Tokyo, p. 363-382 (in Japanese without English title).
Strain(s): 48 
Yumoto, K., Kasai, F., Kawachi, M. 2013 Taxonomic re-examination of Chlamydomonas strains maintained in the NIES-Collection. Microbiol. Cult. Coll., 29, 1-12.
Strain(s): 1584374384408849681021102210481733184818492201220222032204220622072208220922102211221222132214221522162218221922202222222322242225222822292230223122332234223522362237223922402241224222432246224722482314231523162317231823192320232123222323232424622463249925752576257725782579 
Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T. 2016 Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata. J. Jpn. Soc. Wat. Environ., 3, 63-70 (in Japanese with English summary).
Keywords: Green algar; EC50; Toxicity test; Antibacterial substance; Combined toxicity
Strain(s): 35 
DOI: 10.2965/jswe.39.63
Yamashita, N., Tanaka, H., Miyajima, K., Suzuki, Y. 2006 Evaluation of effect of seaage effluent on river water quality using AGP and algal growth inhibition tests. J. JSCE, 62, 191-200 (in Japanese with English summary).
Keywords: AGP test; algal growth inhibition test; sewage effluent; Tama River
Strain(s): 35 
Yamaguchi, H., Nishijima, T., Nishitani, H., Fukami, K., Adachi, M. 2004 Organic phosphorus utilization and alkaline phosphatase production of 3 red tide photoplankton. Nippon Suisan Gakkaishi, 70, 123-130 (in Japanese with English summary).
Keywords: Karenia mikimotoi; Skeletonema costatum; Heterosigma akashiwo; red tide phytoplankton; organic phosphorus; alkaline phosphatase
Strain(s): 5324 
Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T. 2016 Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples. Sessile Organisms, 33, 38-43 (in Japanese with English summary).
Keywords: Residual chlorine; DPD; Seawater; Coscinodiscus wailesii
Strain(s): 15237323 
DOI: 10.4282/sosj.33.38
Yukino, T., Hayashi, M., Inoue, Y., Imamura, J., Nagano, N., Murata, H. 2005 Preparation of docosahexaenoic acid fortified Spirulina platensis and its lipid and fatty acid compositions. Nippon Suisan Gakkaishi, 71, 74-79 (in Japanese with English summary).
Keywords: docosahexaenoic acid; DHA; Spirulina; foods with function claims
Strain(s): 39 

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