Search Reference

Sadakane, H., Hatano, S. 1982 Isoenzymes of glucose 6-phosphate dehydrogenase in relation to frost hardiness of Chlorella ellipsoidea. In Plant Cold Hardiness and Freezing Stress, Eds. by Li, P. H. & Sakai, A., Academic Press, New York, p. 157-167.
Strain(s): 2170 
Sadakane, H., Ishibashi, K., Yosimoto, M., Hatano, S. 1981 Effects of low temperature, light and O2 on chilling-sensitive and -resistant strains in Chlorella ellipsoidea. Plant Cell Physiol., 22, 657-666.
Keywords: chilling injury; Chlorella ellipsoidea; O2 evolution; O2 uptake
Strain(s): 2170 
DOI: 10.1093/oxfordjournals.pcp.a076209
Sadakane, H., Kabata, K., Ishibashi, K., Watanabe, T., Hatano, S. 1980 Studies on frost hardiness in Chlorella ellipsoidea. V. The role of glucose and related compounds. Environ. Exp. Bot., 20, 297-305.
Strain(s): 2170 
Sadakane, H., Kawanami, T., Imamura, H., Fukumoto, K., Kawai, Y., Hatano, S. 1978 Studies on synchronous culture in three of Chlorella ellipsoidea with different susceptibilities to low temperature. Sci. Bull. Fac. Agr., Kyushu Univ., 32, 161-168 (in Japanese).
Strain(s): 2170 
Saijo, H., Tsuruta, K., Kusumoto, N., Ashitani, T., Takahashi, K. 2013 Growth inhibition activities of Sugi bark components against Heterosigma akashiwo. J. Wood Sci., 59, 238-242.
Keywords: Sugi bark; Extract; Inhibition activity; Red tide plankton; Heterosigma akashiwo
Strain(s): 293 
Saito, K., Matsumoto, M., Sekine, T., Murakoshi, I. 1989 Inhibitory substances from Myriophyllum brasiliense of growth of blue-green algae. J. Nat. Prod., 52, 1221-1226.
Strain(s): 44 
Sakaguchi, M., Hausmann, K., Suzaki, T. 1998 Food capture and adhesion by the heliozoon Actinophrys sol. Protoplasma, 203, 130-137.
Keywords: Actinophrys sol; Exocytosis; Extrusomes; Feeding behavior; Heliozoa; Prey adhesion
Strain(s): 2497 
Sakaguchi, M., Murakami, H., Suzaki, T. 2001 Involvement of a 40-kDa glycoprotein in food recognition, prey capture, and induction of phagocytosis in the protozoon Actinophrys sol. Protist, 152, 33-41.
Strain(s): 24973374 
PubMed: 11401035
DOI: 10.1078/1434-4610-00041
Sakaguchi, M., Suzaki, T., Shigenaka, Y. 1997 Statistical analysis of spatial patterns of the heliozoan Actinophrys sol. Protoplasma, 196, 117-122.
Keywords: Heliozoa; Spatial point pattern; Cell distribution; Interaction potential; Likelihood analysis
Strain(s): 2497 
Sakaguchi, M., Suzuki, T. 1999 Monoxenic culture of the heliozoon Actinophrys sol. Eur. J. Protistol., 35, 1-10.
Keywords: Actinophrys sol; Antibiotic; Heliozoa; Monoxenic Culture
Strain(s): 24973374 
DOI: 10.1016/S0932-4739(99)80050-9
Sakaguchi, M., Suzuki, T., Khan, S. M. M. K. Hausmann, K. 2002 Food capture by kinetocysts in the heliozoon Raphidiophrys contractilis. Eur. J. Protistol., 37, 453-458.
Keywords: Exocytosis; Extrusome; Heliozoa; Kinetocyst
Strain(s): 24983374 
DOI: 10.1078/0932-4739-00847
Sakaguchi, T., Horikoshi, T., Nakajima, A. 1978 Uptake of uranium from seawater by microalgae. J. Ferm. Technol., 56, 561-565.
Strain(s): 213821392279 
Sakaguchi, T., Tsuji, T., Nakajima, A., Horikoshi, T. 1979 Accumulation of cadmium by green microalgae. Eur. J. Appl. Microbiol. Biotechnol., 8, 207-215.
Strain(s): 227322742279 
Sakai, H., Katayama, H., Oguma, K., Ohgaki, S. 2011 Effect of photoreactivation on ultraviolet inactivation of Microcystis aeruginos. Water Sci. Technol., 63, 1224-1229.
Keywords: Microcystis aeruginosa; photoreactivation; UV treatment
Strain(s): 98 
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Growth inhibition of Anabaena variabilis by low- or medium-pressure UV lamp irradiation. Environ. Eng. Res., 42, 495-501 (in Japanese with English summary).
Keywords: growth inhibition; Anabaena variabilis; UV irradiation; model calculation
Strain(s): 23 
Sakai, H., Ogawa, K., Katayama, H., Ohgaki, S. 2005 Low- or medium-pressure UV lamp inactivation of Microcystis aeruginosa. J. Water Environ. Technol., 3, 55-61.
Keywords: Microcystis aeruginosa; low-pressure (LP) UV lamp; medium-pressure (MP) UV lamp; endonuclease sensitive site (ESS) assay; photoreactivation
Strain(s): 98 
Sakai, H., Oguma, K., Katayama, H., Ohgaki, S. 2007 Effects of low- or medium-pressure ultraviolet lamp irradiation on Microcystis aeruginosa and Anabaena variabilis. Wat. Res., 41, 11-18.
Keywords: Microcystis aeruginosa; Anabaena variabilis; Low-pressure ultraviolet lamp; Medium-pressure ultraviolet lamp; DNA damage; Photosynthetic activity
Strain(s): 2398 
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017 Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan. Fish. Sci., 83, 113-121.
Keywords: Algicidal bacteria; Real-time polymerase; chain reaction; Zostera marina; Harmful algal bloom; Most probable number
Strain(s): 1 
DOI: 10.1007/s12562-016-1048-y
Sakamori, S., Uraya, K., Annen, K. 2001 Eutrophication of the sea area (III). Bull. Toyama Pref. Environ. Sci. Res. Center, 29, 34-42 (in Japanese with English summary).
Strain(s): 561 
Sakamori, S., Yoshikawa, H., Annen, K. 2000 The research on the eutrophication of the sea area (II). Bull. Toyama Pref. Environ. Sci. Res. Center, 28, 31-41 (in Japanese with English summary).
Strain(s): 561 
Sakamoto, S., Murata, N., Ohmori, M. 1991 The concentration of cyclic AMP and adenylate cyclase activity in cyanobacteria. Plant Cell Physiol., 32, 581-584.
Keywords: adenylate cyclase; cyanobacterium; cyclic AMP; cyclic nucleotide phosphodiesterase
Strain(s): 19 
Sakamoto, S., Yamaguchi, M., Watanabe, M. F., Watanabe, M., Kamiya, H. 1996 Distribution and characterization of lectins from natural and cultured Microcystis spp. In Harmful and Toxic Algal Blooms, Eds. by Yasumoto, T., Oshima, Y. & Fukuyo, Y., Intergovernmental Oceanographic Commission of UNESCO 1996, p. 569-572.
Strain(s): 1001021062981057106110661080 
Sakamoto, T., Kumihashi, K., Kunita, S., Masaura, T., Inoue-Sakamoto, K., Yamaguchi, M. 2011 The extracellular-matrix-retaining cyanobacterium Nostoc verrucosum accumulates trehalose, but is sensitive to desiccation. FEMS Microbiol. Ecol., 77, 385-394.
Keywords: compatible solute; stress tolerance; extracellular; polysaccharide; water stress protein (WspA)
Strain(s): 2539 
Sakayama, H. 2008 Taxonomic of Nitella (Charales, Charophyceae) based on comparative morphology of oospores and multiple DNA marker phylogeny using cultured material. Phycol. Res., 56, 202-215.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 16111615170417051706 
Sakayama, H., Arai, S., Nozaki. H., Kasai, F., Watanabe, M. M. 2006 Morphology, molecular phylogeny and taxonomy of Nitella comptonii (Charales, Characeae). Phycologia, 45, 417-421.
Keywords: atpB gene; Charales; Charophyceae; internal transcribed spacer region; Japanese taxa; morphology; Nitella comptonii; oospores; psaB gene; rbcL gene; scanning electron microscopy; taxonomy
Strain(s): 170417051706 
Sakayama, H., Hara Y., Nozaki, H. 2004 Taxonomic re-examination of six species of Nitella (Charales, Charophyceae) from Asia, and phylogenetic relationships within the genus based on rbcL and atpB gene sequences. Phycologia, 43, 91-104.
Strain(s): 1615 
Sakayama, H., Hara, Y., Arai, S., Sato, H., Nozaki, H. 2004 Phylogenetic analyses of Nitella subgenus Tieffallenia (Charales, Charophyceae) using nuclear ribosomal DNA internal transcribed spacer sequences. Phycologia, 43, 672-681.
Strain(s): 1615 
Sakayama, H., Miyaji, K., Nagumo, T., Kato, M., Hara Y., Nozaki, H. 2005 Taxonomic re-examination of 17 species of Nitella subgenus Tieffallenia (Charales, Charophyceae) based on internal morphology of the oospore wall and multiple DNA marker sequences. J. Phycol., 41, 195-211.
Keywords: Charales; Charophyceae; chloroplast DNA; morphology; Nitella; nuclear DNA; oospores; scanning electron microscopy; taxonomy; Tieffallenia
Strain(s): 1615 
Sakayama, H., Nozaki, H., Kasaki, H., Hara Y. 2002 Taxonomic re-examination of Nitella (Charales, Charophyceae) from Japan, based on microscopical studies of oospore wall ornamentation and rbcL gene sequences. Phycologia, 41, 397-408.
Strain(s): 1615 
Sakio, Y., Ishibashi, M., Okuyama, E. 2000 Chemical constituents of a diatom Triceratium dubium. Nat. Med., 54, 104.
Keywords: Triceratium dubium; diatom; microalgae; epiloliolide; phaeophorbide
Strain(s): 556 
Sako, Y., Adachi, M., Ishida, Y. 1995 Specific monoclonal antibodies and DNA probes for the identification of the toxic dinoflagellate genus Alexandrium. In Harmful Marine Algal Blooms, Eds. by Lassus, P., et al., Lavoisier, Intercept Ltd., p. 77-82.
Strain(s): 5 
Sako, Y., Hosoi-Tanabe, S., Uchida, A. 2004 Fluorescence in situ hybridization using rRNA-targeted probes for simple and rapid identification of the toxic dinoflagelates Alexandrium tamarense and Alexandrium catenella. J. Phycol., 40, 598-605.
Keywords: Alexandrium; FISH method; LSU rRNA; molecular identification; paralytic shellfish poisoning (PSP); probe; toxic dinoflagellate
Strain(s): 112 
Sakurai, K., Mori, N., Sato, N. 2014 Detection and characterization of phosphatidylcholine in various strains of the genus Chlamydomonas (Volvocales, Chlorophyceae). J. Plant Res., 127, 641-650.
Keywords: Chlamydomonas; Delta 5 desaturase; Diacylglyceryl-N,N,N-trimethylhomoserine; Fatty acid; Phosphatidylcholine
Strain(s): 2207 
DOI: 10.1007/s10265-014-0644-0
Saldarriaga, J. F., McEwan, M. L., Fast, N. M., Taylor, F. J. R., Keeling, P. J. 2003 Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Microbiol., 53, 355-365.
Strain(s): 304 
Saldarriaga, J. F., Taylor, F. J. R., Keeling, P. J., Cavalier-Smith, T. 2001 Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements. J. Mol. Evol., 53, 204-213.
Keywords: Plastid; Dinoflagellates; Small subunit rRNA; Phylogeny; Endosymbiosis
Strain(s): 304365 
Sano, D., Ishifuji, S., Sato, Y., Imae, Y., Takaara, T., Masago, Y., Omura, T. 2011 Identification and characterization of coagulation inhibitor proteins derived from cyanobacterium Microcystis aeruginosa. Chemosphere 82, 1096-1102.
Keywords: Aluminum-immobilized affinity; chromatography; Coagulation inhibition; Cyanobacterial protein; Microcystis aeruginosa; Phage display; Polyaluminum chloride
Strain(s): 91 
PubMed: 21211815
DOI: 10.1016/j.chemosphere.2010.12.005
Sano, T., Kaya, K. 1995a Oscillamide Y, a chymotrypsin inhibitor from toxic Oscillatoria agardhii. Tetrahedron Letters, 36, 5933-5936.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01198-Q
Sano, T., Kaya, K. 1995b A 2-amino-2-butenoic acid (Dhb)-containing microcystin isolated from Oscillatoria agardhii. Tetrahedron Letters, 36, 8603-8606.
Strain(s): 610 
DOI: 10.1016/0040-4039(95)01824-2
Sano, T., Kaya, K. 1996 Oscillapeptin G, a tyrosinase inhibitor from toxic Oscillatoria agardhii. J. Nat. Prod., 59, 90-92.
Strain(s): 610 
Sano, T., Takagi, H., Nagano, K., Nishikawa, M., Kaya, K. 2011 Accurate LC-MS analyses for microcystions using per-15N-labeled microcystins. Anal. Bioanal. Chem., 399, 2511-2516.
Keywords: Microcystin; Stable isotope; Surrogate; Liquid chromatography-mass spectrometry; Accurate analysis
Strain(s): 107 
DOI: 10.1007/s00216-010-4639-y
Sargent, D. F., Taylor, C. P. S. 1972 Light-induced inhibition of respiration in DCMU-poisoned Chlorella caused by phytosystem I activity. Can. J. Bot., 50, 13-21.
Strain(s): 2151 
Sasa, T. 1957 Effect of photphorescent particles suspended in the medium upon the efficiency of light-energy utilization by Chlorella cells. J. Gen. Appl. Microbiol., 3, 121-124.
Strain(s): 2170 
Sasa, T., Kunieda, R., Tamiya, H. 1960 Growing Daphnia (water-fleas) with Chlorella. J. Gen. Appl. Microbiol., 6, 252-255.
Strain(s): 2170 
Sasa, T., Takaichi, S. Hatakeyama, N., Watanabe, M. M. 1992 A novel carotenoid ester, loroxanthin dodecenoate, from Pyramimonas parkeae (Prasinophyceae) and a chlorarachniophycean alga. Plant Cell Physiol., 33, 921-925.
Keywords: (3R,3'R,6'R)-β,ε-carotene-3,19,3'-triol 19-(2-dodecanoate); chlorarachniophyte; 1H-NMR; loroxanthin dodecenoate; Pyramimonas parkeae
Strain(s): 254 
Sasaki, G., Katoh, K., Hirose, N., Suga, H., Kuma, K., Miyata, T., Su, Z. H. 2007 Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes. Gene, 401(1-2), 135-144.
Keywords: conjugate alga; stonewort; gene family; divergence; phylogenetic tree; molecular evolution
Strain(s): 228 
Sasaki, K., Marquez, F. J., Nishio, N., Nagai, S. 1995 Promotive effect of 5-aminolevulinic acid on the growth and photosynthesis of Spirulina platensis. J. Ferment. Bioeng., 79, 453-457.
Keywords: 5-aminolevulinic acid; Spirulina platensis; phycocyanin; chlorophyll
Strain(s): 39 
DOI: 10.1016/0922-338X(95)91261-3
Satjarak, A., Graham, L. E. 2017 Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes. J. Phycol., 53, 415-424.
Keywords: chloroplast DNA variation; chloroplast genome; intraspecific variation; prasinophyte; Pyramimonas parkeae
Strain(s): 254 
PubMed: 28130930
DOI: 10.1111/jpy.12515
Sato, M., Murata, Y., Mizusawa, M., Iwahashi, H., Oka, S.-I. 2004 A simple and rapid dual-fluorescence viability assay for microalgae. Microbiol. Cult. Coll., 20, 53-59.
Keywords: microalgae; SYTOX Green; viability assay; autofluorescence
Strain(s): 32 
Sato, N., Mori, N., Hirashima, T., Moriyama, T. 2016 Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis. Plant J., 87, 281–292.
Keywords: Chlamydomonas; Cyanidioschyzon merolae; phosphatidylcholine biosynthesis; phosphatidylethanolamine methyltransferase; phosphoethanolamine methyltransferase
Strain(s): 22072242 
PubMed: 27133435
DOI: 10.1111/tpj.13199
Sato, N., Moriyama, T. 2007 Genomic and biochemical analysis of lipid biosynthesis in the unicellular Rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. Eukaryot. Cell, 6, 1006-1017.
Strain(s): 3377 
Sato, N., Murata, N. 1981 Studies on the temperature shift-induced desaturation of fatty acids in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis. Plant Cell Physiol., 22, 1043-1050.
Keywords: Anabaena variabilis; cyanobacterium; fatty acid desaturation; monogalactosyl diacylglycerol; temperature shift
Strain(s): 2093 
Sato, N., Murata, N. 1982 Lipid biosynthesis in the blue-green alga (cyanobacterium), Anabaena variabilis. III. UDPglucose: diacylglycerol glucosyltransferase in vitro. Plant Cell Physiol., 23, 1115-1120.
Keywords: Anabaena variabilis; blue-green alga; glucosyltransterase; glyceroglycolipids; monoglucosyl diacylglycerol
Strain(s): 2093 
Sato, N., Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. I. Lipid class. Biochim. Biophys. Acta, 710, 271-278.
Strain(s): 2093 
Sato, N., Murata, N. 1982 Lipid biosynthesis in the blue-green alga, Anabaena variabilis. II. Fatty acids and lipid molecular species. Biochim. Biophys. Acta, 710, 279-289.
Strain(s): 2093 
Sato, N., Murata, N., Miura, Y., Ueta, N. 1979 Effect of growth temperature on lipid and fatty acid compositions the blue-green algae, Anabaena variabilis and Anacystis nidulans. Biochim. Biophys. Acta, 572, 19-28.
Strain(s): 3277 
Sato, N., Seyama, Y., Murata, N. 1986 Lipid-linked desaturation of palmitic acid in monogalactosyl diacylglycerol in the blue-green alga (cyanobacterium) Anabaena variabilis studied in vivo. Plant Cell Physiol., 27, 819-835.
Keywords: Anabaena variabilis; blue-green alga (cyanobacterium); lipid-linked desaturation; mass spectroscopy; monogalactosyl diacylglycerol; palmitoleic acid biosynthesis
Strain(s): 2093 
Sato, R., Fujishima, H., Itabashi, Y. 2003 Analysis of algal phosphatidylglycerols by chiral phase high-performane liquid chromatography. Bull. Fish. Sci. Hokkaido Univ., 54, 7-12 (in Japanese with English summary).
Keywords: phosphatidylglycerol; diastereomer; Enteromorpha sp.; Chlorella vulgaris; Heterosigma akashiwo; spinach; parsley; green tea; chiral phase HPLC; 3,5-dinitrophenylurethane
Strain(s): 227 
Sato, S., Nishimura, T., Uehara, K., Sakanari, H., Tawong, W., Hariganeya, N., Smith, K., Rhodes, L., Yasumoto, T., Taira, Y., Suda, S., Yamaguchi, H., Adachi, M. 2011 Phylogeography of Ostreopsis along West Pacific coast, with special reference to a novel clade from Japan. PLoS One, 6, e27983 (article ID).
Strain(s): 33513353 
DOI: 10.1371/journal.pone.0027983
Sato, Y., Ito, A., Tate, N., Sasaki, A., Aizawa, J., Umita, T. 2008 Impact of coexistent metal on survival of diatom in presence of polynuclear hydroxy-alminium ion. Environ. Eng. Res., 45, 139-145.
Keywords: polynuclear hydroxyl-Aluminium ion; diatom; complex ecological impact of coexistent metal cations
Strain(s): 487 
Satoh, H., Takeda, H. 1989 Detection and first characterization of a cell-wall lytic activity in Chlorella ellipsoidea C-27. Physiol. Plant., 77, 20-26.
Keywords: autolysis; cell wall; Chlorella; lytic activity
Strain(s): 2170 
Satoh, M., Iwamoto, K., Suzuki, I., et al. 2009 Cold stress stimulates intracellular calcification by the coccolithophore, Emiliania huxleyi (Haptophyceae) under phosphate-deficient conditions. Mar. Biotechnol., 11, 327-333.
Keywords: calcification; coccolith production; coccolithophore; cold stress; Emiliania huxleyi; phosphate deprivation
Strain(s): 837 
Sawada, K., Handa, N., Shiraiwa, Y., Danbara, A., Montani, S. 1996 Long-chain alkenones and alkyl alkenoates in the coastal and pelagic sediments of the northwest North Pacific, with special reference to reconstruction of Emiliania huxleyi and Gephyrocapsa oceanica ratios. Org. Geochem., 24, 751-764.
Keywords: alkenone, alkyl alkenoate; Uk'37; EE/K37; EE/K38; Emiliania huxleyi; Gephyrocapsa oceanica; coccolithophorid assemblage; northwest North Pacific sediment
Strain(s): 837838 
DOI: 10.1016/S0146-6380(96)00087-3
Sawada, K., Shiraiwa, Y. 2004 Alkenone and alkenoic acid compositions of the membrane fractions of Emiliania huxleyi. Phytochemistry, 65, 1299-1307.
Keywords: coccolithophorid; Emiliania huxleyi; Haptophyceae; alkenones; alkenoic acids; lipid biomarker; membrane fractionation; intracellular localization; unsaturation index
Strain(s): 837 
Scheibe, J. 1972 Photoreversible pigment: occurrence in a blue-green alga. Science, 176, 1037-1039.
Strain(s): 37 
PubMed: 17778430
DOI: 10.1126/science.176.4038.1037
Schoevaert, D., Krishnamswamy, S., Couturier, M., Marano, F. 1988 Ciliary beat and cell motility of Dunaliella: computer analysis of high speed microcinematography. Biol. Cell, 62, 229-240.
Strain(s): 2253 
Schulze, D., Robenek, H., McFadden, G. I., Melkonian, M. 1987 Immunolocalization of a Ca2+-modulated contractile protein in the flgellar apparatus of green algae: the nucleus-basal body connector. Eur. J. Cell Biol., 45, 51-61.
Strain(s): 2253 
Schwarze, P., Frandsen, N. O. 1960 Herstellung von Chlorella-Farbmutanten mit Hilfe von radioaktiven Isotopen. Naturwissenschaften, 47, 47.
Strain(s): 21612162 
Schwender, J., Gemünden, C., Lichtenthaler, H. K. 2001 Chlorophyta exclusively use the 1-deoxyxylulose 5-phosphate/2-C-methylerythritol 4-phosphate pathway for the biosynthesis of isoprenoids. Planta, 212, 416-423.
Keywords: Charophyta; 1-Deoxy-D-xylulose; Green alga; Isopentenyl diphosphate; Isoprenoid biosynthesis; Mevalonate
Strain(s): 296 
Sekiguchi, M., Ohtsuki, A., Shibata, Y., Morita, M. 1995 Arsenic compounds accumulated in phytoplanktons of marine origin. J. Environ. Chem. [Kankyô-Kagaku], 5, 366-367 (in Japanese with English title).
Strain(s): 16208 
Sekimoto, H. 2000 Intercellular communication during sexual reproduction of Closterium (Conjugatophyceae). J. Plant Res., 113, 343-352.
Keywords: chemotaxis; Closterium; conjugation; mating; sex pheromone; sexual reproduction
Strain(s): 6465228229 
Sekimoto, H. 2002 Production and secretion of a biologically active Closterium sex pheromone by Saccharomyces cerevisiae. Plant Physiol. Biochem., 40, 789-794.
Keywords: Closterium; conjugation; pheromone; PR-IP; sexual reproduction
Strain(s): 67 
Sekimoto, H. 2004 Molecular characterization of a novel sex pheromone, PR-IP inducer, in Closterium peracerosum-strigosum-littorale complex. Jpn. J. Phycol., 52, Suppl., 117-122.
Keywords: Closterium; conjugation; gamete mating; sex pheromone, sexual reproduction
Strain(s): 67 
Sekimoto, H., Fujii, T. 1991 Sexual reproduction of microalgae : its physiological and biochemical study. Cell Science, 7, 562-571 (in Japanese with English title).
Strain(s): 67 
Sekimoto, H., Fujii, T. 1992 Analysis of gametic protoplast release in the Closterium peracerosum-strigosum-littorale complex (Chlorophyta). J. Phycol., 28, 615-619.
Keywords: biologically active glycoprotein; Closterium peracerosum-strigosum-littorale complex; conjugation; gametic protoplast release
Strain(s): 67 
Sekimoto, H., Fukumoto, R. 1999 Sex pheromones in Closterium. Chem. Regul. Plant, 34, 305-315.
Strain(s): 646567 
Sekimoto, H., Fukumoto, R., Dohmae, N., Takio, K. Fujii, T., Kamiya, Y. 1998 Molecular cloning of a novel sex pheromone responsible for the release of a different sex pheromone in Closterium peracerosum-strigosum-littorale complex. Plant Cell Physiol., 39, 1169-1175.
Keywords: Clostreium; conjugation; gamete; mating; sex pheromone; sexual reproduction
Strain(s): 67 
Sekimoto, H., Satoh, S., Fujii, T. 1990 Biochemical and physiological properties of a protein inducing protoplast release during conjugation in the Closterium peracerosum-strigosum-littorale complex. Planta, 182, 348-354.
Keywords: Clostreium; conjugation (Closterium); glycoprotein; protoplast release in conjugation
Strain(s): 67 
Sekimoto, H., Satoh, S., Fujii, T. 1992 Biochemical and physiological properties of a gametic protoplast-release-inducing protein in Closterium. Korean J. Phycol., 7, 121-129.
Keywords: Clostreium; conjugation; glycoprotein; protoplast release in conjugation
Strain(s): 67 
Sekimoto, H., Satoh, S., Fujii, T. 1993 Analysis of binding of biotinylated protoplast-release-inducing protein that induces release of gametic protoplasts in the Closterium peracerosum-strigosum-littorale complex. Planta, 189, 468-474.
Keywords: Clostreium; conjugation (Closterium); protoplast-release; inducing protein; pheromone; receptor
Strain(s): 67 
Sekimoto, H., Sone, Y., Fujii, T. 1994 A cDNA encoding a 19-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 105, 447.
Strain(s): 67 
Sekimoto, H., Sone, Y., Fujii, T. 1994 cDNA cloning of a 42-kilodalton subunit of protoplast-release-inducing protein from Closterium. Plant Physiol., 104, 1095-1096.
Strain(s): 67 
Sekimoto, H., Sone, Y., Fujii, T. 1994 Regulation of expression of the genes for a sex pheromone by an inducer of the sex pheromone in the Closterium peracerosum-strigosum-littorale complex. Planta, 193, 137-144.
Keywords: Clostreium complex; inducer (of protoplast-release-inducing protein); pheromone; protoplast-release-inducing protein (PR-IP); sexual reproduction
Strain(s): 67 
Sekimoto, H., Sone, Y., Fujii, T. 1995 Biochemical, physiological, and molecular analysis of sexual isolation in the species complex Closterium peracerosum-strigosum-littorale (Chlorophyta). J. Phycol., 31, 611-615.
Keywords: Chlorophyta; Closterium peracerosum-strigosum-littorale complex; conjugation; pheromone; plotoplast-release-inducing protein (PR-IP); sexual isolation
Strain(s): 646567 
Sekimoto, H., Tanabe, Y., Takizawa, M., Ito, N., Fukumoto, R., Ito, M. 2003 Expressed sequence tags from Closterium peracerosum-strigosum-littorale complex, a unicellular charophycean alga, in the sexual reproduction process. DNA Res., 10, 147-153.
Keywords: Closterium; conjugation; EST; sexual reproduction
Strain(s): 67 
DOI: 10.1093/dnares/10.4.147
Sekimoto, H., Tanabe, Y., Tsuchikane, Y., Shirosaki, H., Fukuda,H., Demura, T., Ito, M. 2006 Gene expression profiling using cDNA microarray analysis of the sexual reproduction stage of the unicellular charophcean alga Closterium peracerosum-strigosum-littorale comples. Plant Physiol., 141, 271-279.
Strain(s): 67 
DOI: 10.1104/pp.116.078048
Sekino, K., Kobayashi, H., Shiraiwa, Y. 1996 Role of coccoliths in the utilization of inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi: a survey using intact cells and protoplasts. Plant Cell Physiol., 37, 123-127.
Keywords: calcification; coccolith; coccolithophorid; Emiliania huxleyi; inorganic carbon utilization; protoplast
Strain(s): 837 
Sekino, K., Shiraiwa, Y. 1994 Accumulation and utilization of dissolved inorganic carbon by a marine unicellular coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 35, 353-361.
Keywords: bicarbonate uptake; calcification; CO2 uptake; coccolithophorid; Emiliania huxleyi; inorganic carbon accumulation
Strain(s): 837 
Sekino, K., Shiraiwa, Y. 1995 CO2 release from the culture of calcifying and noncalcifying marine unicellular algae. J. Mar. Biotechnol., 3, 101-104.
Strain(s): 837 
Sekino, K., Shiraiwa, Y. 1996 Evidence for the involvement of mitochondrial respiration in calcification in a marine coccolithophorid, Emiliania huxleyi. Plant Cell Physiol., 37, 1030-1033.
Keywords: calcification; CO2 fixation; coccolithophorids; Emiliania huxleyi; mitochondrial respiration; photosynthesis
Strain(s): 837 
Seo, P-S., Yokota, A. 2003 The phylogenetic relationships of cyanobacteria inferred from 16S rRNA, gyrB, rpoC1 and rpoD1 gene sequences. J. Gen. Appl. Micobiol., 49, 191-203.
Keywords: cyanobacteria; gyrB; phylogeny; protein evolution; rpoC1; rpoD1; 16S rDNA
Strain(s): 192225392093209521283277 
Setohigashi, Y., Hamaji, T., Hayama, M., Matsuzaki, R., Nozaki, H. 2011 Uniparential inheritance of chloroplast DNA is strict in the isogamous volvocalean Gonium. PLoS One, 6, e19545 (article ID).
Strain(s): 24552457 
Sevilla, J. B., Nakajima, F., Kasuga, I. 2014 Comparison of aquatic and dietary exposure of heavy metals Cd, Cu, and Zn to benthic ostracod Heterocypris incongruens. Environ. Toxicol. Chem., 33, 1624-1630.
Keywords: Aqueous exposure; Heavy metal; Dietary exposure; Ostracod; Sediment
Strain(s): 2170 
Shao, J., He, Y., Li, F., Zhang, H., Chen, A., Luo, S., Gu, J.-D. 2016 Growth inhibition and possible mechanism of oleamide against the toxin-producing cyanobacterium Microcystis aeruginosa NIES-843. Ecotoxicology, 25, 225-233.
Keywords: Oleamide; Microcystis aeruginosa; Growth inhibition; Photosynthesis; Microcystins
Strain(s): 843 
DOI: 10.1007/s10646-015-1582-x
Shao, J., Jiang, Y., Wang, Z., Peng, L., Luo, S., Gu, J., Li, R. 2014 Interactions between algicidal bacteria and the cyanobacterium Microcystis aeruginosa: lytic characteristics and physiological responses in the cyanobacteria. Int. J. Environ. Sci. Technol., 11, 469-476.
Keywords: Bacillus sp.; Gene expressions; Lytic characteristics; Microcystis aeruginosa; Oxidative stress; Photosynthesis inhibition
Strain(s): 843 
DOI: 10.1007/s13762-013-0205-4
Shao, J., Liu, D., Gong, D., Zeng, Q., Yan, Z., Gu, J.-D. 2013 Inhibitory effects of sanguinarine against the cyanobacterium Microcystis aeruginosa NIES-843 and possible mechanisms of action. Aquat. Toxicol., 142-143, 257-263.
Keywords: Aldehydes; Chattonella marina; fatty acids; harmful phytoplankton; ichthyotoxicity; rainbow trout gill cell line; RT gill-W1
Strain(s): 843 
Shao, J., Peng, L., Luo, S., Yu, G., Gu, J.-D., Lin, S., Li, R. 2013 First report on the allelopathic effect of Tychonema bourrellyi (Cyanobacteria) against Microcystis aeruginosa (Cyanobacteria). J. Appl. Phycol., 25, 1567-1573.
Keywords: Tychonema bourrellyi; Microcystis aeruginosa; Allelopathy; Volatile substances; ß-Ionone; Cyanobacteria
Strain(s): 843 
DOI: 10.1007/s10811-012-9969-z
Shao, J., Wang, Z., Liu, Y., Liu, H., Peng, X., Wei, X., Lei, M., Li, R. 2012 Physiological responses of Microcystis aeruginosa NIES-843 (cyanobacterium) under the stress of chitosan modified kaolinite (CMK) loading. Ecotoxicology, 21, 698-704.
Keywords: Physiological responses; Microcystis aeruginosa; Chitosan modified kaolinite
Strain(s): 843 
Shao, J., Xu, Y., Wang, Z., Jiang, Y., Yu, G., Peng, X., Li, R. 2011 Elucidating the toxicity targets of β-ionone on photosynthetic system of Microcystis aeruginosa NIES-843 (cyanobacteria). Aquat. Toxicol., 104, 48-55.
Keywords: Microcystis aeruginosa; Photosynthesis; Gene expression; Chlorophyll a fluorescence
Strain(s): 843 
PubMed: 21543049
DOI: 10.1016/j.aquatox.2011.03.014
Shao, J., Yu, G, Wang, Z., Wu, Z, Peng, X., Li, R. 2010 Towards clarification of the inhibitory mechanism of wheat bran leachate on Microcystis aeruginosa NIES-843 (cyanobacteria): physiological responses. Ecotoxicology, 19, 1634-1641.
Keywords: Wheat bran leachate; Microcystis; Gene expression; Photosynthesis
Strain(s): 843 
Sharifah, E. N., Eguchi, M. 2011 The phytoplankton Nannochloropsis oculata enhances the ability ofRoseobacter clade bacteria to inhibit the growth of Vibrio anguillarum. PLoS One, 6, e26756 (article ID).
Strain(s): 2145 
Sharifah, E. N., Eguchi, M. 2012 Benefits of live phytoplankton, Chlorella vulgaris, as a biocontrol agent against fish pathogen Vibrio anguillarum. Fish. Sci., 78, 367-373.
Keywords: Chlorella vulgaris; Vibrio anguillarum; Biocontrol; Sulfitobacter sp.
Strain(s): 1269 
Shatari, Y., Ogawa, S. 2001 Observation of cell division in Closterium (Zygnematales, Chlorophyta) and its application to the teaching materials in high school biology. Jpn. J. Biol. Educ., 41, 90-99 (in Japanese with English summary).
Keywords: asexual reproduction; cell division; Closterium; teaching material
Strain(s): 52182 
Shen, M., Xu, JL., Tsang, TY., Au, D. W. T. 2010 Toxicity comparison between Chattonella marina and Karenia brevis using marine medaka (Oryzias melastigma): Evidence against the suspected ichthyotoxins of Chattonella marina. Chemosphere, 80, 585-591.
Keywords: Harmful algal blooms (HABs); Chattonella marina; Karenia brevis; Marine medaka; Brevetoxins; Free fatty acids
Strain(s): 3 
PubMed: 20444485
DOI: 10.1016/j.chemosphere.2010.03.051
Shen, XF., Chu, FF., Lam P. K.S., Zeng, R. J. 2015 Biosynthesis of high yield fatty acids from Chlorella vulgaris NIES-227 under nitrogen starvation stress during heterotrophic cultivation. Water Res., 81, 294-300.
Keywords: Microalgae; Nitrogen starvation; Heterotrophic cultivation; Fatty acid content; Fatty acid yield; Glucose
Strain(s): 227 
DOI: 10.1016/j.watres.2015.06.003
Shibakami, M., Sohma, M. 2017 Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films. Carbohydr. Polym., 155, 416-424.
Keywords: Paramylon; β-1,3-glucan; Thermoplastic; Acylation; Euglena
Strain(s): 48 
DOI: 10.1016/j.carbpol.2016.08.093
Shibata, K., Morimura, Y., Tamiya, H. 1964 Precise measurement of the change of statistical distribution of cell size occurring during the synchronous culture of Chlorella. Plant Cell Physiol., 5, 315-320.
Strain(s): 2170 
Shibukawa, K., Takamura, Y., Takao, E., Irie, M., Yagi, O. 1986 Studies on the growth factors of an axenic clone of the cyanobacterium Microcystis aeruginosa K-3A. Jpn. J. Limnol., 47, 247-255 (in Japanese with English summary).
Keywords: cyanobacteria; Microcystis; vitamin B12; growth factor
Strain(s): 604 
Shihira-Ishikawa, I., Osafune, T., Ehara, T., Ohkuro, I., Hase, E. 1977 An early light-independent phase of chloroplast development in dark-grown cells of Euglena gracilis Z. I. Dependence of the plastid development on previous culture conditions. Plant Cell Physiol., Spec. Iss. (Photosynthetic Organelles), 445-454.
Strain(s): 48 
Shimada, K., Kitamura, N., Yoshida, Y., Matsushima, H., Asada, Y. 2010 Effects of water soluble extract from the dead leaves of deciduous trees on the growth control of toxic cyanobacteria like Microcystis aeruginosa. In Water Pollution X, Eds. by Marinov, A. M. & Brebbia, C. A., WIT Press, Bucharest. p. 71-82.
Strain(s): 102 
Shimba, S., Unno, K., Okada, S. 1993 Characteristics of the photosynthetic metabolism of carbon in deuterated Chlorella ellipsoidea C-27. Plant Cell Physiol., 34, 255-262.
Keywords: Chlorella ellipsoidea; deuterium; isotope effect; photosynthetic metabolism of carbon
Strain(s): 2170 
Shimizu, K., Sano, T., Kubota, R., Kobayashi, N., Tahara, M., Obama, T., Sugimoto, N., Nishimura, T., Ikarashi, Y. 2014 Effects of the amino acid constituents of microcystin variants on cytotoxicity to primary cultured rat hepatocytes. Toxins, 6, 168-179.
Keywords: microcystin; variants; cytotoxicity; primary cultured rat hepatocytes; environmental water
Strain(s): 90595610 
DOI: 10.3390/toxins6010168
Shimogawara, K., Muto, S. 1989 Heat shock induced change in protein ubiquitination in Chlamydomonas. Plant Cell Physiol., 30, 9-16.
Keywords: ATP-dependent proteolytic system; Chlamydomonas; heat shock response; protein degradation; ubiquitin
Strain(s): 2138 
Shimonaga, T., Fujiwara, S., Kaneko, M., Izumo, A., Nihei, S., Francisco, P. B., Satoh, A., Fujita, Naoko., Nakamura, Y., Tsuzuki, M. 2007 Variation in Storage α-polyglucans of red algae: Amylose and semi-amylopectin types in Porphyridium and goycogen type in Cyanidium. Mar. Biotechnol., 9, 192-202.
Keywords: Amylose; glycogen; granule-bound starch synthase; red algae; semi-amylopection
Strain(s): 5512138 
Shimonaga, T., Konishi, M., Oyama, Y., Fujiwara, S., Satoh, A., Fujita, N., Colleoni, C., Buléon, A., Putaux, J.-L., Ball, S. G., Yokoyma, A., Hara, Y., Nakamura, Y., Tsuzuki, M. 2008 Variation in Storage α-polyglucans of the Porphyridiales (Rhodophyta). Plant Cell Physiol., 49, 103-116.
Keywords: Amylose; Floridean starch; Glycogen; Porphyridiales; Rhodophyta; Semi-amylopection
Strain(s): 181445305512138216022582280 
Shimura, Y., Hirose, Y., Misawa, N., Osana, Y., Katoh, H., Yamaguchi, H., Kawachi, M. 2015 Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. DNA Res., 22, 403-412.
Keywords: comparative genomics; cyanobacteria; genome sequence; nitrogen fixation
Strain(s): 2104 
DOI: 10.1093/dnares/dsv022
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017 Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970. GenomeA, 5, e00139-17 (article ID).
Strain(s): 970 
PubMed: 28385852
DOI: 10.1128/genomeA.00139-17
Shin, H. J., Matsuda, H., Murakami, M., Yamaguchi, K. 1997 Aeruginosins 205A and -B, serine protease inhibitory glycopeptides from the cyanobacterium Oscillatoria agardhii (NIES-205). J. Org. Chem., 62, 1810-1813.
Strain(s): 205 
Shinobu, K., Abe, S., Asano, K., Abe, T. 1992 On the laboratory experiment of algal culturing (AGP-test) [Sôrui baiyô no shitsunai jikken (AGP shiken) ni tsuite]. Heisei 4-nendo Tôhoku Chihô Kensetsu-kyoku Kan-nai Gijutsu Kenkyû Happyôkai Shiryô, Kyô-28, 151-154 (in Japanese without English title).
Strain(s): 30 
Shinozaki, A., Sato, N., Hayashi, Y. 2009 Peroxisomal targeting signals in green algae. Protoplasma, 235, 57-66.
Keywords: Closterium; green algae; peroxisomal targeting signal (PTS); peroxisome; transport
Strain(s): 228 
Shirabe, T., Ito, K., Yoshimura, E. 2008 Dequenching of Cu(I)-bathocuproinedisulfonate complexes for high-performance liquid chromatographic determination of phytochelatins, heavy-metal-binding peptides produced by the primitive red alga Cyanidioschyzon merolae. Anal. Chem., 80, 9360-9362.
Strain(s): 3377 
DOI: 10.1021/ac801741b
Shiraishi, H. 2015 Association of heterotrophic bacteria with aggregated Arthrospira platensis exopolysaccharides: implications in the induction of axenic cultures. Biosci. Biotechnol. Biochem., 79, 331-341.
Keywords: cyanobacteria; Arthrospira platensis; exopolysaccharides; axenic cultures; Alcian blue
Strain(s): 3946 
DOI: 10.1080/09168451.2014.972333
Shiraishi, H., Tabuse, Y. 2013 The AplI restriction-modification system in an edible cyanobacterium, Arthrospira (Spirulina) platensis NIES-39, recognizes the nucleotid sequence 5'-CTGCAG-3'. Biosci. Biotechnol. Biochem., 77, 782-788.
Keywords: Arthrospira platensis; Spirulina; restriction enzyme; DNA methyltransferase; edible cyanobacteria
Strain(s): 39 
Shiraiwa, Y. 2003 Physiological regulation of carbon fixation in the photosynthesis and calcification of coccolithophorids. Comp. Biochem. Physiol. B-Biochem. Mol. Biol., 136, 775-783.
Keywords: carbon dioxide fixation; calcification; calcium carbonate crystal; cell growth; coccolith; coccolithophorids; Emiliania huxleyi; photosynthesis; nutrient-depletion effect; Warburg effect
Strain(s): 837 
Shiraiwa, Y., Danbara, A., Kanke, Y. 2004 Characterization of highly oxygen-sensitive photosynthesis in coccolithophorids. Jpn. J. Phycol., 52, Suppl., 87-94.
Keywords: CO2 fixation; coccolithophorids; Emiliania huxleyi; glycolate pathway; O2 effect; O2 inhibition; photorespiratory nitrogen cycle; Warburg effect
Strain(s): 837838 
Shiraiwa, Y., Fakler, J., Miyachi, S. 1981 Factors controlling carbonic anhydrase activity in Chlorella vulgalis 11h. In Photosynthesis. VI. Regulation of Carbon Metabolism, Ed. by Akoyunoglou, G., Balaban International Science Services, Philadelphia, p. 493-499.
Strain(s): 2160 
Shiraiwa, Y., Goyal, A., Tolbert, N. E. 1993 Alkalization of the medium by unicellular green algae during uptake of dissolved inorganic carbon. Plant Cell Physiol., 34, 649-657.
Keywords: alkalization; dissolved inorganic carbon concentrating mechanism; photosynthesis
Strain(s): 2160 
Shiraiwa, Y., Hatano-Sugimoto, Y., Satoh, M. 2003 Regulation of intracellular calcification and algal growth by nutrient supply in coccolithophorids. In Biomineralization (BIOM2001): formation, diversity, evolution and application, Proceedings of th 8th International Symposium on Biomineralization, Eds. by Kobayashi & Ozawa, p. 241-246.
Keywords: algal bloom; calcification; coccolithophorid; Emiliania huxleyi; Gephyrocapsa oceanica; nitrate; phosphate; nutrient-depletion
Strain(s): 837838 
Shiraiwa, Y., Kayano, K. 2007 Coccolith. In Development of New Functional Materials Inspired by Biomineralization , Ed. by Kato, T., CMC Publications, Tokyo, p. 52-63.
Strain(s): 837 
Shiraiwa, Y., Miyachi, S. 1983 Factors controlling induction of carbonic anhydrase and efficiency of photosynthesis in Chlorella vulgaris 11h cells. Plant Cell Physiol., 24, 919-923.
Keywords: carbonic anhydrase; Chlorella vulgaris (11h cell); CO2 fixation; photosynthesis
Strain(s): 2160 
Shiraiwa, Y., Miyachi, S. 1985 Effects of temperature and CO2 concentration on induction of carbonic anhydrase and changes in efficiency of photosynthesis in Chlorella vulgaris 11h. Plant Cell Physiol., 26, 543-549.
Keywords: carbonic anhydrase; Chlorella vulgaris; CO2 concentration; photosynthesis; temperature
Strain(s): 2160 
Shiraiwa, Y., Miyachi, S. 1985 Role of carbonic anhydrase in photosynthesis of blue-green alga (cyanobacterium) Anabaena variabilis ATCC 29413. Plant Cell Physiol., 26, 109-116.
Keywords: Anabaena variabilis ATCC 29413; carbonic anhydrase; CO2 effect; CO2 transport; cyanobacterium; photosynthesis
Strain(s): 2095 
Shiraiwa, Y., Yokoyama, S., Satoh, A. 1991 pH-dependent regulation of carbonic anhydrase induction and change in photosynthesis during adaptation of Chlorella cells to low CO2. Jpn. J. Phycol., 39, 355-362.
Strain(s): 2170 
Shiratori, T., Ishida, K-I. 2016 Entamoeba marina n. sp.; a new species of Entamoeba isolated from tidal flat sediment of Iriomote Island, Okinawa, Japan. J. Eucaryot. Microbiol., 63, 230-286.
Keywords: Amoebozoa; anaerobic protist; Archamoebae; morphology; phylogenetic analysis; SSU rDNA
Strain(s): 3721 
DOI: 10.1111/jeu.12276
Shiratori, T., Ishida, K-I. 2016 Trachyrhizium urniformis n. g., n. sp., a novel marine filose thecate amoeba related to a cercozoan environmental clade (novel Clade 4). J. Eucaryot. Microbiol., 63, 722-731.
Keywords: Cercozoa; phylogeny; SSU rRNA gene; Thecofilosea; ultrastructure
Strain(s): 38763877 
DOI: 10.1111/jeu.12319
Shiratori, T., Yabuki, A., Ishida, K-I. 2012 Esquamula lacrimiformis n.g., n. sp., a new member of Thaumatomonads that lacks siliceous scales. J. Eucaryot. Microbiol., 59, 527-536.
Keywords: Cercozoa; extrusome; microbody; phylogeny; taxonomy; ultrastructure
Strain(s): 2745 
Shirokawa, Y., Karino, K., Mayama, S. 2012 Developmental plasticity and genotype–environment interactions influence valve morphology in the Cyclotella meneghiniana species complex (Bacillariophyceae). Eur. J. Phycol., 47, 245-253.
Keywords: Cyclotella meneghiniana; developmental plasticity; diatoms; fultoportulae; genotype–environment interaction; salinity; strutted processes
Strain(s): 23642365 
Shirokawa, Y., Shimada, M. 2013 Sex allocation pattern of the diatom Cyclotella meneghiniana. Proc. R. Soc. Lond. Ser. B-Biol. Sci., 280, 20130503.
Keywords: sex allocation; spilit sex ratio; size advantage model; fertility insurance; unicellular organism; microfluidic system
Strain(s): 2364 
DOI: 10.1098/rspb.2013.0503
Shirokawa, Y., Shimada, M. 2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghiniana. Proc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID).
Keywords: centric diatom, cytoplasmic inheritance; non-genetic heritability; quantitative genetics; structural inheritance; rapid evolution
Strain(s): 2364 
DOI: 10.1098/rspb.2016.1632
Shitanda, I., Takada, K., Sakai, Y., Tatsuma, T. 2005 Compact amperometric algal biosensors for the evaluation of water toxicity. Anal. Chim. Acta, 530, 191-197.
Keywords: amperometric biosensor; Chlorella vulgaris; algae; alginate gel; polyion complex; herbicides
Strain(s): 227 
Shoguchi, E., Shinzato, C., Hisata, K., Satoh, N., Mungpakdee, S. 2015 The large mitochondrial genome of Symbiodinium minutum reveals conserved noncoding sequences between dinoflagellates and Apicomplexans. Genome Biol. Evol., 7, 2237-2244.
Keywords: Symbiodinium; Plasmodium; mitochondrial genome expansion; RNA editing; gene map; noncoding
Strain(s): 3808 
PubMed: 26199191
DOI: 10.1093/gbe/evv137
Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Seidi, A., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., Satoh, N. 2013 Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Curr. Biol., 23, 1399–1408.
Strain(s): 3808 
PubMed: 23850284
DOI: 10.1016/j.cub.2013.05.062
Shoji, R., Nkayama, H., Sakai, Y., Mohri, S., Yamada, M. 2008 Evaluation of the ecotoxicity of solid wastes using rapid leaching test and bioassays. J. Environ. Sci. Health Part A-Toxic/Hazard. Subst. Environ. Eng. , 43, 1048-1053.
Keywords: Heavy metals; ecotoxicity; organic compounds; rapid leaching test; bioassays
Strain(s): 35 
Simon, A., Glockner, G., Felder, M., Melkonian, M., Becker, B. 2006 EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae). BMC Plant Biol., 6, 2 (article ID).
Strain(s): 476 
Six, C., Finkel, Z. V., Rodriguez, F., Marie, D., Partensky, F., Campbell, D. A. 2008 Contrasting photoacclimation costs in ectotypes of the marine eukayotic picoplankter Ostreococcus. Limnol. Oceanogr., 53, 255-265.
Strain(s): 2674 
Škaloud, P., Nemjová, K., Veselá, J., Cˇ erná, K., Neustupa,J. 2011 A multilocus phylogeny of the desmid genus Micrasterias (Streptophyta): Evidence for the accelerated rate of morphological evolution in protists. Mol. Phylogenet. Evol., 61, 933-943.
Keywords: Biogeography; Evolution; Micrasterias; Morphology; Phylogeny; Protists
Strain(s): 152774 
Smith, D. R., Burki, F., Yamada, T., Grimwood, J., Grigoriev, I. V., Van Etten, J. L., Keeling, P. J. 2011 The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One, 6, e23624 (article ID).
Strain(s): 2166 
Smith, D. R., Hamaji, T., Olson, B. J., Durand, P. M., Ferris, P., Michod, R. E., Featherston, J., Nozaki, H., Keeling, P. J. 2013 Organelle genome complexity scales positively with organism size in volvocine green algae. Mol. Biol. Evol., 30, 793-797.
Keywords: Chlamydomonas; Gonium; Pleodorina; Volvox; mitochondrion; chloroplast
Strain(s): 1363 
PubMed: 23300255
DOI: 10.1093/molbev/mst002
Smith, D. R., Jackson, C. J., Reyes-Prieto, A. 2014 Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida. Mol. Phylogenet. Evol., 79, 380-384.
Keywords: Plastid genome; Cyanelle; Genetic diversity; Organelle genome; Nucleotide substitution
Strain(s): 763 
Smith, D. R., Lee, R. W. 2010 Low nucleotide diversity for the expanded organelle and nuclear genomes of Volvox carteri supports the mutational-hazard hypothesis. Mol. Biol. Evol., 27, 2244-2256.
Keywords: genetic diversity; mitochondrial genome; plastid genome; Chlamydomonas reinhardtii; green algae; genome architecture
Strain(s): 397 
DOI: 10.1093/molbev/msq110
Snell, T. W., Boyer, E. M. 1988 Thresholds for mictic female production in the rotifer Brachionus plicatilis (muller). J. Exp. Mar. Biol. Ecol., 124, 73-85.
Keywords: food level; mixis; population density threshold; reproduction; rotifer; sex
Strain(s): 2258 
Soma, Y., Imaizumi, T., Yagi, K., Kasuga, S. 1993 Estimation of algal succession in lake water using HPLC analysis of pigments. Can. J. Fish. Aquat. Sci., 50, 1142-1146.
Strain(s): 4481111234351 
Song, C., Suzaki, T. 2013 Improved preservation of organelies in Paramecium bursaria by freeze-substitution with glutaraldehyde and osmium tetroxide. J. Electr. Microsc. Technol. Med. Biol., 27, 1-8.
Keywords: Paramecium bursaria; endosymbiosis; cryofixation; ultrastructural preservation; freeze-substitution
Strain(s): 3374 
Spoof, L. 2004 High-performance liquid chromatography of microcystins and nodularins, cyanobacterial peptide toxins. PhD thesis, Åbo Akademi University, Turku, Finland, 73 pp.
Strain(s): 107 
Spoof, L., Neffling, M.-R., Meriluoto, J. 2010 Fast separation of microcystins and nodularins on narrow-bore reversed-phase columns coupled to a conventional HPLC system. Toxicon, 55, 954-964.
Keywords: Microcystins; Nodularins; Fast high-performance liquid; chromatography
Strain(s): 107 
Srivastava, A., Ko,S-R., Ahn, C-Y., Oh, H-M., Ravi, A. K., Asthana, R. K. 2016 Microcystin biosynthesis and mcyA expression in geographically distinct Microcystis strains under different nitrogen, phosphorus, and boron regimes. Biomed Res. Int., 2016, 5985987 (article ID).
Strain(s): 843 
DOI: 10.1155/2016/5985987
Steinbrenner, J., Linden, H. 2001 Regulation of two carotenoid biosynthesis genes coding for phytoene synthase and carotenoid hydroxylase during stress-induced astaxanthin formation in the green alga Haematococcus pluvialis. Plant Physiol., 125, 810-817.
Strain(s): 144 
DOI: 10.1104/pp.125.2.810
Steinbrenner, J., Linden, H. 2003 Light induction of carotenoid biosynthesis genes in the green alga Haematococcus pluvialis: regulation by photosynthetic redox control. Plant Mol. Biol., 52, 343-356.
Keywords: astaxanthin; carotenoid biosynthesis; green algae; Haematococcus pluvialis; lycopene βcyclase; redox regulation
Strain(s): 144 
Stern, R. F., Horak, A., Andrew, R. L., Coffroth, M.-A., Andersen, R. A., Küpper, F. C., Jameson, I., Hoppenrath, M., Véron, B., Kasai, F., Brand, J., James, E. R., Keeling, P. J. 2010 Environmental barcoding reveals massive dinoflagellate diversity in marine environments. PLoS One, 5, e13991 (article ID).
Strain(s): 1367 
Su, Y., Wang, J., Shi, M., Niu, X., Yu, X., Gao, L., Zhang, X., Chen, L., Zhang, W. 2014 Metabolomic and network analysis of astaxanthin-producing Haematococcus pluvialis under various stress conditions. Biores. Technol., 170, 522-529.
Keywords: Astaxanthin; Stress; Metabolomics; Metabolic network; Haematococcus pluvialis
Strain(s): 144 
DOI: 10.1016/j.biortech.2014.08.018
Suda, K., Tanji, K., Hori, K., Unno, H. 1999 Evidence for a novel Chlorella virus -encoded alginate lyase. FEMS Microbiol. Lett., 180, 45-53.
Keywords: Chlorella; virus; alginate lyase; lysis
Strain(s): 6868432170 
Suda, S. 2003 Light microscopy and electron microscopy of Nephroselmis spinosa sp. nov. (Prasinophyceae, Chlorophyta). J. Phycol., 39, 590-599.
Keywords: morphology; Nephroselmis spinosa; Prasinophyceae; scale morphology; taxonomy; ultrastructure
Strain(s): 934 
Suda, S., Bhuiyan, M. A. H., Faria, D. G. 2013 Genetic diversity of Pyramimonas from Ryukyu Archipelago, Japan (Chlorophyceae, Pyramimonadales). J. Mar. Sci. Tech., 21, 285-296.
Keywords: Pyramimonas; nuclear SSU rDNA; genetic diversity; Ryukyu Archipelago
Strain(s): 3392339333943396339733983399340134033405340734083411341334143415341634173418 
Suda, S., Nozaki, H., Watanabe, M. M. 2005 Morphology and sexual reproduction of Carteria palmata sp. nov. belonging to the Carteria group I sensu Lembi (Chlorophyceae, Volvocales). Phycologia, 44, 596-607.
Strain(s): 133613371338 
Suda, S., Watanabe, M. M. 1995 Life cycle of Pseudocarteria mucosa (Korschikov) Ettl (Volvocales, Chlorophyta). Phycologia, 34, 58-64.
Strain(s): 523 
Suda, S., Watanabe, M. M., Inouye, I. 1989 Evidence for sexual reproduction in the primitive green alga Nephroselmis olivacea (Prasinophyceae). J. Phycol., 25, 596-600.
Strain(s): 483485 
Suda, S., Watanabe, M. M., Inouye, I. 1990 Morphological observations on the rare quadriflagellate Pseudocarteria mucosa (Chlorophyceae, Volvocales). Phycologia, 29, 54-64.
Strain(s): 522523524 
Suda, S., Watanabe, M. M., Inouye, I. 2004 Electron microscopy of sexual reproduction in Nephroselmis olivacea (Prasinophyceae, Chlorophyta). Phycol. Res., 52, 273-283.
Keywords: electron microscopy; endoplasmic reticulum; germination; Nephroselmis olivacea; Prasinophyceae; sexual reproduction; zygote formation; zygote wall
Strain(s): 483485 
Suda, S., Watanabe, M. M., Otsuka, S., Mahakahant, A., Yongmanitchai, W., Nopartnaraporn, N., Liu, Y., Day, J. G. 2002 Taxonomic revision of water-bloom-forming species of oscillatorioid cyanobacteria. Int. J. Syst. Evol. Microbiol., 52, 1577-1595.
Keywords: cyanobacteria; water bloom; oscillatorioid; nomenclature; taxonomy
Strain(s): 205207594595596610846847917 
Suda, T., Hata, T., Kawai, S., Okamura, H., Nishida, T. 2012 Treatment of tetracycline antibiotics by laccase in the presence of 1-hydroxybenzotriazole. Biores. Technol., 103, 498-501.
Keywords: Tetracycline antibiotics; Bacterial growth inhibition; Algal growth inhibition; Laccase; 1-Hydroxybenzotriazole
Strain(s): 35 
DOI: 10.1016/j.biortech.2011.10.041
Sudo, R., Tai, S., Yagi, O., Okada, M., Hosomi, M., Yamane, A. N. 1981 Comprehensive studies on the eutrophication of fresh-water areas. Determination of algal growth potential by algal assay procedure. Res. Rep. Natl. Inst. Environ. Stud., No. 26, 1-53 (in Japanese with English title).
Strain(s): 35 
Sugasawa, M., Matsuzaki, R., Arakaki, Y., Nozaki, H. 2015 Morphology and phylogenetic position of a rare four-celled green alga, Pascherina tetras (Volvocales, Chlorophyceae), based on cultured material. Phycologia, 54, 342-348.
Keywords: Culture strain; Molecular phylogeny; Morphology; Multicellularity; Spondylomoraceae; Ultrastructure
Strain(s): 37493750 
DOI: 10.2216/15-27.1
Sugasawa, M., Matsuzaki, R., Kawafune, K., Takahashi, T., Kawachi, M., Krientiz, L., Nozaki, H. 2015 Taxonomic study of Pyrobotrys (Spondylomoraceae, Chlorophyceae) based on comparative morphological and molecular analyses of culture strains established using novel methods. Cytologia, 80, 513-524.
Keywords: Molecular phylogeny; Morphology; Pyrobotrys; Pyrobotrys elongata; Spondylomoraceae; Stigma; Taxonomy; Ultrastructure
Strain(s): 37693770377137733774 
DOI: 10.1508/cytologia.80.513
Sugiura, N., Iwami, N., Itayama, T., Inamori, Y. 1997 Population dynamics of grazer Monas guttula and prey Microcystis viridis using aquatic large scale microcosm. J. Jpn. Soc. Wat. Environ., 20, 332-337.
Keywords: disappearance process; grazer; Microcystis; microflagellate; large scale microcosm
Strain(s): 102 
Sugiyama, T., Matsumoto, C., Akazawa, T., Miyachi, S. 1969 Structure and function of chloroplast proteins. VII. Ribulose-1,5-diphosphate carboxylase of Chlorella ellipsoidea. Arch. Biochem. Biophys., 129, 597-602.
Strain(s): 2170 
Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID).
Keywords: chloroplast division; algal cell cycle; Cyanidioschyzon merolae; Cyanophora paradoxa
Strain(s): 5473377 
DOI: 10.1073/pnas.1612872113
Susilaningsih, D. 2007 Accelerating of pink pigment excretion from cyanobacterium Oscillatoria by Co-Cultivation with Anabaena. HHAYATI J. Biosci., 14, 18-22.
Keywords: Oscillatoria; Anabaena variabilis; biosurfactant; cyanobacterium; pink pigment
Strain(s): 192344422 
Suzuki, E., Tsuzuki, M., Miyachi, S. 1986 Accumlation of inorganic carbon in the cells of Euglena gracilis Z grown photoautotrophically in ordinary air. Plant Cell Physiol., 27, 1205-1208.
Keywords: Euglena gracilis Z; intracellular inorganic carbon accumulation; photosynthesis
Strain(s): 48 
Suzuki, E., Tsuzuki, M., Miyachi, S. 1987 Photosynthetic characteristics of chloroplasts isolated from Euglena gracilis Z grown photoautotrophically. Plant Cell Physiol., 28, 1377-1388.
Keywords: carbon dioxide concentration; Euglena gracilis Z; isolated chloroplast; photoautotrophic growth; photosynthetic carbon fixation
Strain(s): 48 
Suzuki, K., Mitra, S., Iwata, O., Ishikawa, T., Kato, S., Yamada, K. 2015 Selection and characterization of Euglena anabaena var. minor as a new candidate Euglena species for industrial application. Biosci. Biotechnol. Biochem., 79, 1730-1736.
Keywords: Euglena anabaena var. minor; Euglena gracilis; paramylon
Strain(s): 48 
DOI: 10.1080/09168451.2015.1045828
Suzuki, K., Miyachi, S., Tamiya, H. 1952 Changes of the capacity of dark reduction of carbon dioxide during the normal growth cycle of Chlorella ellipsoidea. In Annual Report of the Research Committee on the Application of Artificial Radioactive Isotopes in Japan, Vol. 2, Part 1, p. 67-70.
Strain(s): 2170 
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017 Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris. J. Appl. Electrochem., 47, 197-203.
Keywords: Titanium dioxide; Photocatalyst; Anti-algal effect; Hydrogen peroxide
Strain(s): 227 
DOI: 10.1007/s10800-016-1031-4
Suzuki, R., Fujita, Y. 1972 Studies on the Hill reaction of membrane fragments of blue-green algae II. The reaction steps inactivated at high water concentration. Plant Cell Physiol., 13, 427-436.
Strain(s): 1923 
Suzuki, S., Tazawa, R., Miya, A., Adachi, T., Kanki, R., Toyobe, M., Oguchi, M. 1994 Gas revitalization by microalgae. I. Studies on species and culture condition. CELSS J., 7, 23-28 (in Japanese with English summary).
Keywords: microalgae; Spirulina; SOT medium; culture condition; CO2/O2 gas exchange system
Strain(s): 394546 
Suzuki, T., Ezure, T., Ishida, M. 1998 In-vitro antitumour evaluation of extracts from cyanobacteria Anabaena. J. Pharm. Pharmacol., 50, 136 (Supplement).
Strain(s): 1920932094 
Suzuki, T., Imai, M., Ishida, M. 1997 Influence of environmental factors on phosphorous content in the marine microalga Dunaliella. Toxicol. Environ. Chem., 64, 173-181.
Keywords: Dunaliella; photosynthesis; polyphosphates; response surface model
Strain(s): 225422572258 
Suzuki, T., Ohtaguchi, K., Koide, K. 1993 Cell growth inhibition in mouse leukemia L5178Y cells in vitro by crude extracts from freshwater blue-green algae. J. Chem. Eng. Japan, 26, 463-464.
Strain(s): 21163277 
Suzuki, T., Watanabe, R., Uchida, H., Matsushima, R., Nagai, H., Yasumoto, T., Yoshimatsu, T., Sato, S., Adachi, M. 2012 LC-MS/MS analysis of novel ovatoxin isomers in several Ostreopsis strains collected in Japan. Harmful Algae, 20, 81-91.
Keywords: Novel ovatoxin isomers; Ostreopsis; Palytoxin analogues; LC-MS/MS
Strain(s): 33513353 
Sakai, M., Hosoda, A., Kanazawa, S. 2003 Isolation and characterization of two cyanobacteria-lytic bacterial strains from the submerged paddy soil. J. soci. soil. microbiol., 57, 21-28 (in Japanese with English summary).
Keywords: Cyanobacteria; Lytic bacteria; Paddy field; Anabaena
Strain(s): 192337 
Shoji, R., Okita, N., nakanishi, H. 2013 Analysis of the effects of humic acid extracter from the Tama River sediment on the Pseudokirchneriella subcapitata growth inhibition by copper by NICA (non-ideal competitive adsorption)-Donnan model. J. Jpn. Soc. Wat. Environ., 36, 1-9 (in Japanese with English summary).
Keywords: River sediment; Ecotoxicity; Heavy metal
Strain(s): 35 
Shinohara, A., Imai, A., Komatsu, K., Matsushige, K., Nara, F. 2008 Application of HPLC-PAD to highly sensitive analysis of dissolved carbohydrates and theit composition in lake water and extracellular organic matter derived from algae. J. Jpn. Soc. Wat. Environ., 31, 447-454 (in Japanese with English summary).
Keywords: carbohydrates; DOM; HPLC-PAD; lake water; algal culture
Strain(s): 4474 
Shikata, T., Sakurada, K., Jomoto, Y., Oyama, N., Onji, M., Yoshida, M., Ohwada, K. 2011 Growth dynamics of Chattonella antiqua in relation to nutrients in the Yatsushiro Sea. Nippon Suisan Gakkaishi, 77, 40-52 (in Japanese with English summary).
Keywords: Chattonella; red tide; nutrient; nitrogen; iron; bioassay; Yatsushiro Sea; phosphate
Strain(s): 1 
Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017 Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis. Sci Rep., 7, 41022 (article ID).
Strain(s): 48 
PubMed: 28106164
DOI: 10.1038/srep41022
Sekimoto, H. 2017 Sexual reproduction and sex determination in green algae. J. Plant Res., 130, 423-431.
Keywords: Closterium; Chlamydomonas; Sexual reproduction; Sex determination
Strain(s): 6768 
PubMed: 28188480
DOI: 10.1007/s10265-017-0908-6
Shiba, K., Inaba, K. 2017 Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae. J. Plant Res., 130, 465-473.
Keywords: Calaxin; Cilia; Dynein; Opisthokont; Prasinophyte; Sperm flagella
Strain(s): 626 
PubMed: 28424932
DOI: 10.1007/s10265-017-0931-7

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