1. Reference list published in 2017

Reference Strain (s)
Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017  Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species.  Algal Research, 21, 191-202. NIES-144 Haematococcus lacustris
Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y.  2017  Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae.  Front. Plant Sci., 8, e343 (article ID). NIES-3377 Cyanidioschyzon merolae
Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017  High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy.  Proc. of SPIE, 10076 NIES-48 Euglena gracilis
Hamasaki, A.  2017  Study of the optimal cultivation for micro-algae.  The 12th Conference on Biomass Science, 27-28 (in Japanese with English summary). NIES-226 Graesiella emersonii
Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N.  2017  Characterization of phosphoethanolamine-N-methyltransferases in green algae.  Biochem. Biophys. Res. Commun., 488, 141-146. NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K.  2017  Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii.  Acta Crystallogr. F-Struct. Biol., F73, 86-89. NIES-2237 Chlamydomonas reinhardtii
Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K.  2017  Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii.  Phytochemistry, 135, 18-23. NIES-2237 Chlamydomonas reinhardtii
Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017  Application of MALDI Biotyper to cyanobacterial profiling.  Rapid Commun. Mass Spectrom., 31, 325-332. NIES-73 Sphaerospermopsis kisseleviana,
NIES-89 Microcystis aeruginosa,
NIES-102 Microcystis aeruginosa,
Inamura, E., Katayama, T., Taguchi, S. 2017  Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans.  Plankton Benthos Res., 12, 15-24. NIES-218 Prorocentrum micans
Iwai, S., Hurukawa, T., Yamane, K., Kawasaki, K., Osakada, K.  2017  Heterotrophic nitrogen fixation by the blue-green alga Anabaenopsis circularis.  Transactions of the JSME, 83, 16-00389 (article ID) (in Japanese with English summary). NIES-119 Tetradesmus dimorphus
Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017  Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities.  Algal Research, 21, 213-222. NIES-144 Haematococcus lacustris
Kimura, K., Tomaru, Y. 2017  Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses.  Aquat. Microb. Ecol., 79, 79-83. NIES-3714 Chaetoceros tenuissimus,
NIES-3716 Chaetoceros sp.
Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017  Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01.  Biological Sciences in Space, 31, 1-8. NIES-2109 Nostoc sp.
Kobayashi, N., Yukumoto, M.  2017  Improvement of micro algae yield by culture condition optimization.  The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary). NIES-96 Desmodesmus sp.
Livingston, G., Fukumori, K., Provete, D. B., Kawachi, M., Takamura, N., Leibold, M. A. 2017  Predators regulate prey species sorting and spatialdistribution in microbial landscapes.  J. Anim. Ecol. NIES-2239 Chlamydomonas reinhardtii
Liu, X., Syuhei, B.  2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter.  J. Plankton Res., 39, 111-121. NIES-282 Cryptomonas tetrapyrenoidosa,
NIES-2235 Chlamydomonas reinhardtii
Misumi, M., Sonoike, K. 2017  Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa.  Sci Rep., 7, 46100 (article ID). NIES-547 Cyanophora paradoxa
Motwalli, O., Essack, M., Jankovic, BR., Ji, B., Liu, X., Ansari, HR., Hoehndorf, R., Gao, X., Arold, ST., Mineta, K., Archer, JA., Gojobori, T., Mijakovic, I., Bajic, VB.  2017 In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria.  BMC Genomics, 18, 213-222. NIES-39 Arthrospira platensis
Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, D. J., Archibald, J. M., Slamovits, C. H., 2017  The new red algal subphylum proteorhodophytina comprises the largest and most divergent plastid genomes known.  Curr. Biol., 27, 1-8. NIES-2662 Corynoplastis japonica,
NIES-2742 Bulboplastis apyrenoidosa
Nakada, T., Tomita, M.  2017  Morphology and phylogeny of a new wall‐less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae).  J. Phycol., 53, 108-117. NIES-2254 Dunaliella parva,
NIES-2320 Rhysamphichloris similis,
NIES-3705 Rhysamphichloris curta,
Nobusawa, T., Hori, K., Mori, H., Kurokawa, K., Ohta, H. 2017  Differently localized lysophosphatidic acid acyltransferasescrucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis.  Plant J., 90, 547–559. NIES-2145 Nannochloropsis oceanica
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017  Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan.  Fish. Sci., 83, 113-121. NIES-1 Chattonella marinavar. antiqua
Satjarak, A., Graham, L. E. 2017  Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes.  J. Phycol., 53, 415-424. NIES-254 Pyramimonas parkeae
Shibakami, M., Sohma, M. 2017  Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films.  Carbohydr. Polym., 155, 416-424. NIES-48 Euglena gracilis
Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017  Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis.  Sci Rep., 7, 41022 (article ID). NIES-48 Euglena gracilis
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017  Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970.  GenomeA, 5, e00139-17 (article ID). NIES-970 Synechococcus sp.
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017  Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris.  J. Appl. Electrochem., 47, 197-203. NIES-227 Chlorella vulgaris var. vulgaris
Tadama, S., Shiraishi, H. 2017  Growth of the edible microalga Arthrospira platensis in relation to boron supply.  International Journal of GEOMATE, 12, 90-95. NIES-39 Arthrospira platensis
Takeya, M., Hirai, M. Y., Osanai, T. 2017  Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid eesidue in cyanobacteria.  Sci Rep., 7, 41080 (article ID). NIES-3756 Nostoc sp.
Watanabe, S., Lewis, L. A. 2017  Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy.  Phycologia, 56, 329-353. NIES-155 Chlorococcum chlorococcoides
Yamagishi, T., Horie, Y., Tatarazako, N. 2017  Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata.  Chemosphere, 174, 1-7. NIES-35 Pseudokirchneriella subcapitata
Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017  Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.  PLoS One, 12, e0171259 (article ID). NIES-35 Pseudokirchneriella subcapitata
Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017  Draft genome sequences of nine cyanobacterial strains from diverse habitats.  GenomeA, 5, e01676-16 (article ID). NIES-30 Leptolyngbya sp.,
NIES-208 Oscillatoria rosea,
NIES-592 Fischerella majo,
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Chloramphenicol acetyltransferase—a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae.  Protoplasma, 254, 587-596. NIES-3377 Cyanidioschyzon merolae
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments.  Plant Mol. Biol., 93, 171-183. NIES-1332 Cyanidioschyzon merolae

2. Reference list published in 2016

Reference Strain (s)
Abe, J., Hirano, N., Komiya, A., Kanda, N., Fujiwara, A., Hori, S., Tsuchikane, Y., Sekimoto, H. 2016 Preparation of knockdown transformants of unicellular charophycean alga, Closterium peracerosum-strigosum-littorale complex. bio-protocol, 6 NIES-67 Closterium peracerosum-strigosum-littorale complex,
NIES-68 Closterium peracerosum-strigosum-littorale complex
Aida, T. M., Nonaka, T., Fukuda, S., Kujiraoka, H., Kumagai, Y., Maruta, R., Ota, M., Suzuki, I., Watanabe, M. M., Inomata, H., Smith Jr., R. L. 2016 Nutrient recovery from municipal sludge for microalgae cultivation with two-step hydrothermal liquefaction. Algal Research, 18, 61-68. NIES-48 Euglena gracilis
Anas, A. R. J., Nakajima, A., Naruse, C., Tone, M., Asukabe, H., Harada, K.  2016 Determination of fVIIa-sTF inhibitors in toxic Microcystis cyanobacteria by LC-MS technique.  Mar. Drugs, 14, 7 (article ID). NIES-89 Microcystis aeruginosa,
NIES-102 Microcystis aeruginosa,
NIES-103 Microcystis aeruginosa,
Andemichael, H., Lee, J. W. 2016 Toxicological study of biofuel ethanol with blue green alga Spirulina platensisAlgal Research, 18, 110-115. NIES-39 Arthrospira platensis
Chiu, Y.-T., Yen, H.-K., Lin, T.-F.  2016 An alternativemethodtoquantify2-MIB producing cyanobacteriain in drinking water reservoirs: Method development and field applications. Environ. Res., 151, 618-627. NIES-81 Aphanizomenon flos-aquae f. gracile,
NIES-512 Pseudanabaena galeata,
NIES-824 Dolichospermum smithii,
Featherston, J., Arakaki, Y., Nozaki, H., Durand, P. M., Smith, D. R. 2016 Inflated organelle genomes and a circularmapping mtDNA probably existed at the origin of coloniality in volvocine green algae. Eur. J. Phycol., 51, 369-377. NIES-571 Tetrabaena socialis var. socialis
Guo, B., Lei, C., Ito, T., Jiang, Y., Ozeki, Y., Goda, K.  2016 High-throughput accurate single-cell screening of Euglena gracilis with fluorescence-assisted optofluidic time-stretch microscopy. PLoS One, 11, e0166214 (article ID). NIES-48 Euglena gracilis
Hamaji, T., Mogi, Y., Ferris, P. J., Mori, T., Miyagishima, S., Kabeya, Y., Nishimura, Y., Toyoda, A., Noguchi, H., Fujiyama, A., Olson, B. J. S. C., Marriage, T. N., Nishii, I., Umen, J. G. Nozaki, H.  2016 Sequence of the Gonium pectorale mating locus reveals a complex and dynamic history of changes in volvocine algal mating haplotypes. G3-Genes Genomes Genet., 6, 1179-1189. NIES-2863 Gonium pectorale
Hamana, K., Furuchi, T., Hayashi, H., Niitsu, M.  2016 Additional analysis of cyanobacterial polyamines ─ Distributions of spermidine, homospermidine, spermine, and thermospermine within the phylum Cyanobacteria. ─  Microb. Resour. Syst., 32, 179-186. NIES-2086 Prochlorococcus marinus,
NIES-2087 Prochlorococcus marinus,
NIES-2134 Thermosynechococcus vulcanus,
Hamana, K., Furuchi, T., Nakamura, T., Hayashi, H., Niitsu, M.  2016 Occurrence of penta-amines, hexa-amines and N-methylated polyamines in unicellular eukaryotic organisms belonging to the phyla Heterokontophyta and Labyrinthulomycota of the subdomain Stramenopiles.  J. Gen. Appl. Microbiol., 62, 320-325. NIES-2535 Skeletonema japonicum
Hanschen, E.R., Marriage, T.N., Ferris, P.J., Hamaji, T., Toyoda, A., Fujiyama,A., Neme,R., Noguchi,H., Minakuchi, Y., Suzuki, M., Kawai-Toyooka, H., Smith, D.R., Sparks, H., Anderson, J., Bakaric, R., Luria, V., Karger, A., Kirschner, M.W., Durand, P.M., Michod, R.E., Nozaki, H., Olson, B.J.  2016 The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat. Commun., 7, 11370 (article ID). NIES-2863 Gonium pectorale
Harke, M. J., Jankowiak, J. G., Morrell, B. K., Gobler, C. J.  2016 Transcriptomic responses in the bloom-forming cyanobacterium Microcystis 2 induced during exposure to zooplankton.  Appl. Environ. Microbiol., 83, e02832-16 (article ID). NIES-843 Microcystis aeruginosa
Hirashima, T., Tajima, N., Sato, N. 2016 Draft genome sequences of four species of Chlamydomonas containing phosphatidylcholine. GenomeA, 4, e01070-16 (article ID). NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Leptolyngbya sp. NIES-3755. GenomeA, 4, e00090-16 (article ID NIES-3755 Leptolyngbya sp.
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools. J. Biotechnol., 220, 45-46. NIES-3754 Fischerella sp.
Hirose, Y., Fujisawa, T., Ohtsubo, Y., Katayama, M., Misawa, N., Wakazuki, S., Shimura, Y., Nakamura, Y., Kawachi, M., Yoshikawa, H., Eki, T., Kanesaki, Y. 2016 Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering. J. Biotechnol., 218, 51-52. NIES-3756 Nostoc sp.
Hong, M.-E., Choi, Y. Y., Sim, S. J.  2016 Effect of red cyst cell inoculation and iron (II) supplementation on autotrophic astaxanthin production by Haematococcus pluvialis under outdoor summer conditions.  J. Biotechnol., 218, 25-33. NIES-144 Haematococcus lacustris
Ichinomiya, M., Lopes dos Santos, A., Gourvil, P., Yoshikawa, S., Kamiya, M., Ohki, K., Audic, S., De Vargas, C., Noël, M. H., Vaulot, D., Kuwata, A. 2016 Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms. ISME Journal, 10, 2419-2434. NIES-2682 Triparma pacifica,
NIES-3369 Triparma sp.,
NIES-3370 Triparma eleuthera,
Jin, P., Gao, K. 2016 Reduced resilience of a globally distributed coccolithophore to ocean acidification: Confirmed up to 2000 generations. Mar. Pollut. Bull., 103, 101-108. NIES-1318 Gephyrocapsa oceanica
Joo, J. C., Ahn, C. H., Lee, S., Jang, D-G., Lee, W. H., Ryu, B. R.  2016 Algal growth potential of Microcystis aeruginosa from reclaimed water.  Water Environ. Res.,4, 3232-3238. NIES-298 Microcystis aeruginosa
Kamikawa, R., Shiratori, T., Ishida, K-I., Miyashita, H., Roger, A. J. 2016 Group II intron-mediated trans-splicing in the green-rich mitochondrial genome of an enigmatic eukaryote, Diphylleia rotans.  Genome Biol. Evol., 8, 458-466. NIES-3764 Diphylleia rotans
Kang, Y-H., Kang, S-K., Park, C-S., Joo, J-H., Lee, J-W., Han, M-S.  2016 Use of lactic acid bacteria as a biological agent against the cyanobacterium Anabaena flos-aquaeJ. Appl. Phycol., 28, 1747-1757. NIES-75 Dolichospermum flos-aquae,
NIES-94 Scenedesmus acutus,
NIES-298 Microcystis aeruginosa
Kawachi, M., Kataoka, T., Sato, M., Noël, M.-H., Sato, M., Kuwata, A., Demura, M., Yamaguchi, H. 2016 Application of cryopreservation to genetic analyses of a photosynthetic picoeukaryote community. Gene, 576, 708-716. NIES-765 Rhodomonas duplex,
NIES-1966 Karlodinium veneficum,
NIES-2842 Skeletonema menzelii
Kim, B.-H., Ramanan, R., Kang, Z., Cho, D.-H., Oh, H.-M., Kim, H.-S.  2016 Chlorella sorokiniana HS1, a novel freshwater green algal strain, grows and hyperaccumulates lipid droplets in seawater salinity.  Biomass Bioenerg., 85, 300-305. NIES-2150 'Chlorella ellipsoidea'
Kobayashi, A., Sekiguchi, Y., Oroguchi, T., Okajima, K., Fukuda, A., Oide, M., Yamamoto, M., Nakasako, M. 2016 Specimen preparation for cryogenic coherent X-ray diffraction imaging of biological cells and cellular organelles by using the X-ray free-electron laser at SACLA. J. Synchrot. Radiat., 23, 975-989. NIES-2087 Prochlorococcus marinus
Kobayashi, Y., Takusagawa, M., Harada, N., Fukao, Y., Yamaoka, S., Kohchi, T., Hori, K., Ohta, H., Shikanai, T., Nishimura, Y. 2016 Eukaryotic components remodeled chloroplast nucleoid organization during the green plant evolution. Genome Biol. Evol., 8, 1-16. NIES-2285 Klebsormidium nitens
Komatsu, H., Wada, K., Kanjoh, T., Miyashita, H., Sato, M., Kawachi, M., Kobayashi, M. 2016 Unique chlorophylls in picoplankton Prochlorococcus sp. “Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086.”  Photosynth. Res., 130, 445-467. NIES-2086 Prochlorococcus marinus,
NIES-2087 Prochlorococcus marinus
Kunugi, M., Satoh. S., Ihara. K., Shibata. K., Yamagishi. Y., Kogame. K., Obokata. J., Takabayashi. A., Tanaka. A. 2016 Evolution of green plants accompanied changes in light-harvesting systems. Plant Cell Physiol., 57, 1231-1423. NIES-254 Pyramimonas parkeae,
NIES-1419 Pseudoscourfieldia marina,
NIES-2541 Chlorella variabilis,
Lee, T. Y., Praveenkumar, R., Oh, Y. K. Lee, K., Kim, S. H. 2016 Alginate microgels created by selective coalescence between core drops paired with an ultrathin shell.  J. Mater. Chem. B, 88, 54-62. NIES-144 Haematococcus lacustris
Loganathan, N., Tsai, YC., Mueller-Cajar, O.  2016 Characterization of the heterooligomeric red-type rubisco activase from red algae.  Proc. Nati. Acad. Sci. U. S. A., 113, 14019-1402. NIES-1332 Cyanidioschyzon merolae
Luu, P. T., Son, D. T., Utsumi, M.  2016 Accumulation and elimination of Microcystins in freshwater clam Corbicula leana under laboratory conditions, assessment of risks to humans.  J. Biotechnol., 14, 1-10. NIES-101 Microcystis aeruginosa,
NIES-800 Desmodesmus subspicatus,
NIES-1086 Microcystis aeruginosa
Manali, KM., Arunraj, R., Kumar, T., Ramya, M.  2016 Detection of microcystin producing cyanobacteria in Spirulina dietary supplements using multiplex HRM quantitative PCR.  J. Appl. Phycol. NIES-843 Microcystis aeruginosa
Mano, H., Okamoto, S.  2016 Preliminary ecological risk assessment of 10 PPCPs and their contributions to the toxicity of concentrated surface water on an algal species in the middle basin of Tama River.  J. Water Environ. Technol., 14, 423-436. NIES-35 Pseudokirchneriella subcapitata
Meglič, A., Pecman, A., Rozina, T., Leštan, D., Sedmak, B.  2016 Electrochemical inactivation of cyanobacteria and microcystin degradation using a boron-doped diamond anode - A potential tool for cyanobacterial bloom control. J. Environ. Sci., 53, 248-261. NIES-843 Microcystis aeruginosa
Misumi, M., Katoh, H., Tomo, T., Sonoike, K.  2016 Relationship between photochemical quenching and non-photochemical quenching in six species of cyanobacteria reveals species difference in redox state and species commonality in energy dissipation.  Plant Cell, 57, 1510-1517. NIES-39 Arthrospira platensis
Munakata, H., Nakada, T., Nakahigashi, K., Nozaki, H., Tomita, M.  2016 Phylogenetic position and molecular chronology of a colonial green flagellate, Stephanosphaera pluvialis (Volvocales, Chlorophyceae), among unicellular algae.  J. Eucaryot. Microbiol., 63, 340-348. NIES-123 Rusalka fusiformis,
NIES-144 Haematococcus lacustris,
NIES-421 Carteria crucifera,
Nagai, T., Taya, K., Yoda, I. 2016 Comparative toxicity of twenty herbicides to five periphytic algae and the relationship with mode of action. Environ. Toxicol. Chem., 35, 368-375. NIES-71 Achnanthidium minutissimum,
NIES-487 Nitzschia palea,
NIES-512 Pseudanabaena galeata,
Nakada, T., Ito, T., Tomita, M.  2016 18S ribosomal RNA gene phylogeny of a colonial volvocalean lineage (Tetrabanaceae-Goniaceae-Volvocaceae, Volvocales, Chlorophyceae) and its close relatives.  J. Jpn. Bot., 91, 345-354. NIES-418 Astrephomene gubernaculifera,
NIES-456 Eudorina elegans var. elegan,
NIES-460 Eudorina illinoisensis,
Nakada, T., Tomita, M., Wu, J.-T., Nozaki, H.  2016 Taxonomic revision of Chlamydomonas subg. Amphichloris (Volvocales, Chlorophyceae), with resurrection of the genus Dangeardinia and Descriptions of Ixipapillifera gen. nov. and Rhysamphichloris gen. nov. J. Phycol., 52, 283-304. NIES-2320 Rhysamphichloris similis,
NIES-2321Rhysamphichloris similis,
NIES-2322 Rhysamphichloris similis,
Nakada,T., Ota, S.  2016 What is the correct name for the type of Haematococcus Flot. (Volvocales, Chlorophyceae)? Taxon, 65, 343-348. NIES-2264 Haematococcus lacustris
Nakamura, H., Sawada, K., Araie, H., Shiratori, T., Ishida, K-I., Suzuki, I., Shiraiwa, Y. 2016 Composition of long chain alkenones and alkenoates as a function of growth temperature in marine haptophyte Tisochrysis luteaOrg. Geochem., 99, 78-89. NIES-1000 Gephyrocapsa oceanica,
NIES-2590 Isochrysis galbana,
NIES-2697 Emiliania huxleyi
Nakashima, Y., Egami, Y., Kimura, M., Wakimoto, T. 2016 Metagenomic analysis of the sponge Discodermia reveals the production of the cyanobacterial natural product kasumigamide by ‘Entotheonella’. PLoS One, 11, e0164468 (article ID) NIES-87 Microcystis aeruginosa
Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M. 2016 Growth promotion of Spirulina by steelmaking slag: application of solubility diagram to understand its mechanism. AMB Express, 6 NIES-39 Arthrospira platensis
Nozaki, H., Ueki, N., Isaka, N., Saigo, T., Yamamoto, K., Matsuzaki, R., Takahashi, F., Wakabayashi, K-I., Kawachi, M. 2016 A new morphological type of Volvox from japanese large lakes and recent divergence of this type and V. ferrisii in two different freshwater habitats. PLoS One, 11, e0167148 (article ID). NIES-2736 Volvox ferrisii,
NIES-2737 Volvox ferrisii,
NIES-3987 Volvox ferrisii,
Nozue, S., Mukuno, A., Tsuda, Y., Shiina, T., Terazima, M., Kumazaki, S. 2016 Characterization of thylakoid membrane in a heterocystous cyanobacterium and green alga with dual-detector fluorescence lifetime imaging microscopy with a systematic change of incident laser power.  Biochim. Biophys. Acta-Bioenerg.,1857, 46–59. NIES-2095 Anabaena variabilis
Ota, S., Oshima, K., Yamazaki, T., Kim, S., Yu, Z., Yoshihara, M., Takeda, K., Takeshita, T., Hirata, A., Bišová, K., Zachleder, V., Hattori, M., Kawano, S. 2016 Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure. Biotechnol. Biofuels, 9, 13 (article ID). NIES-2152 Parachlorella kessleri
Ota, S., Yoshihara, M., Yamazaki, T., Takeshita, T., Hirata, A., Konomi, M., Oshima, K., Hattori, M., Bišová, K., Zachleder, V., Kawano, S.  2016 Deciphering the relationship among phosphate dynamics, electron-dense body and lipid accumulation in the green alga Parachlorella kessleriSci. Rep., 6, 25731 (article ID). NIES-2152 Parachlorella kessleri
Parajuli, A., Kwak, D. H., Dalponte, L., Leikoski, N., Galica, T., Umeobika, U., Trembleau, L., Bent, A., Sivonen, K., Wahlsten, M. 2016 A unique tryptophan c-prenyltransferase from the kawaguchipeptin biosynthetic pathway.  Angew. Chem.-Int. Edit., 55, 3596-3599. NIES-88 Microcystis aeruginosa a
Park, J-W., Kim, S. H., Ito, T.,Fujii, T., Kim, S. Y., Laurell, T., Lee, S. W., Goda, K. 2016 Acoustofluidic harvesting of microalgae on a single chip. Biomicrofluidics, 10, 034119 (article ID). NIES-48 Euglena gracilis
Pelusi, A., Hanawa, Y., Araie, H., Suzuki, I., Giordan, M., Shiraiwa, Y.  2016 Rapid detection and quantification of haptophyte alkenones by Fourier transform infrared spectroscopy (FTIR). Algal Research, 19, 48-56. NIES-837 Emiliania huxleyi
Peng, H., Wei, D., Chen, G., Chen, F.  2016 Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169. Biotechnol. Biofuels, 9, 151(article ID). NIES-2166 Coccomyxa subellipsoidea
Quispe, C. F., Sonderman, O., Khasin, M., Riekhof, W. R., Van Etten, J. L., Nickerson, K. W. 2016 Comparative genomics, transcriptomics, and physiology distinguish symbiotic from free-living Chlorella strains. Algal Research, 18, 332-340. NIES-2540 Chlorella variabilis,
NIES-2541 Chlorella variabilis
Rahman, D. Y, Sarian, F. D., van WijkM, A., Martinez-Garcia, M., van der Maarel, M. J. E. C.  2016 Thermostable phycocyanin from the red microalga Cyanidioschyzon merolae, a new natural blue food colorant.  J. Appl. Phycol. NIES-1332 Cyanidioschyzon merolae
Saruwatari, K., Satoh, M., Harada, N., Suzuki, I., Shiraiwa, Y.  2016 Change in coccolith morphology by responding to temperature and salinity in coccolithophore Emiliania huxleyi (Haptophyta) isolated from the Bering and Chukchi Seas. BIOGEOSCIENCES, 13, 2743-2755. NIES-1311 Emiliania huxleyi,
NIES-3362nbsp;Emiliania huxleyi,
NIES-3366 Emiliania huxleyi
Sato, N., Mori, N., Hirashima, T., Moriyama, T. 2016 Diverse pathways of phosphatidylcholine biosynthesis in algae as estimated by labeling studies and genomic sequence analysis. Plant J., 87, 281–292. NIES-2207 Chlamydomonas asymmetrica,
NIES-2242 Chlamydomonas sphaeroides
Shao, J., He, Y., Li, F., Zhang, H., Chen, A., Luo, S., Gu, J.-D.  2016 Growth inhibition and possible mechanism of oleamide against the toxin-producing cyanobacterium Microcystis aeruginosa NIES-843.  Ecotoxicology, 25, 225-233. NIES-843 Microcystis aeruginosa
Shen, X.F., Liu, J.J., Chauhan, A. S., Hu, H., Ma, L.L., Lam, P. K.S., Zeng, R. J. 2016 Combining nitrogen starvation with sufficient phosphorus supply for enhanced biodiesel productivity of Chlorella vulgaris fed on acetate. Algal Research, 17, 261-267. NIES-227 Chlorella vulgaris var. vulgaris
Shiraishi, H. 2016 Cryopreservation of the edible alkalophilic cyanobacterium Arthrospira platensisBiotech. Bioeng., 80, 2051-2057. NIES-39 Arthrospira platensis,
NIES-46 Arthrospira platensis,
NIES-2308 Arthrospira sp.
Shiratori, T., Ishida, K.  2016 Entamoeba marina n. sp.; a new species of Entamoeba isolated from tidal flat sediment of Iriomote Island, Okinawa, Japan. J. Eucaryot. Microbiol.,63, 230-286. NIES-3721 Entamoeba marina
Shiratori, T., Ishida, K-I.  2016 Trachyrhizium urniformis n. g., n. sp., a novel marine filose thecate amoeba related to a cercozoan environmental clade (novel Clade 4).  J. Eucaryot. Microbiol., 63, 722-731. NIES-3876 Trachyrhizium urniformis,
NIES-3877 Nitzschia sp.
Shirokawa, Y., Shimada, M.  2016 Cytoplasmic inheritance of parent-offspring cell structure in the clonal diatom Cyclotella meneghinianaProc. R. Soc. B-Biol. Sci., B283, 20161632 (article ID). NIES-2364 Cyclotella meneghiniana
Sumiya, N., Fujiwara, T., Era, A., Miyagishima, SY. 2016 Chloroplast division checkpoint in eukaryotic algae. Proc. Natl. Acad. Sci. U. S. A., 113, E7629-E7638 (article ID). NIES-547 Cyanophora paradoxa,
NIES-3377 Cyanidioschyzon merolae
Sun, L.W., Jiang, W.J., Sato, H., Kawachi,M., Lu, X.W.  2016 Rapid classification and identification of Microcystis aeruginosa strains using MALDI-TOF MS and polygenetic analysis.  PLoS One,11, e0156275 (article ID). NIES-44 Microcystis aeruginosa,
NIES-87 Microcystis aeruginosa,
NIES-88 Microcystis aeruginosa,
Srivastava, A., Ko,S-R., Ahn, C-Y., Oh, H-M., Ravi, A. K., Asthana, R. K. 2016 Microcystin biosynthesis and mcyA expression in geographically distinct Microcystis strains under different nitrogen, phosphorus, and boron regimes. Biomed Res. Int., 2016, 5985987 (article ID). NIES-843 Microcystis aeruginosa
Takahashi, T., Nishida, T., Tuji, A., Saito, C., Matsuzaki, R., Sato, M., Toyooka, K., Yasuda, H., Nozaki, H. 2016 Delineation of six species of the primitive algal genus Glaucocystis based on in situ ultrastructural characteristics. Sci. Rep., 6, 29209 (article ID). NIES-966 Glaucocystis oocystiformis,
NIES-1369 Glaucocystis oocystiformis,
NIES-3868 Glaucocystis oocystiformis,
Takaichi, S., Yokoyama, A., Mochimaru, M., Uchida, H., Murakami, A.  2016 Carotenogenesis diversification in phylogenetic lineages of Rhodophyta. J. Phycol., 52, 329-338. NIES-697 Cryptomonas acuta,
NIES-700 Rhodomonas baltica,
NIES-705 Chroomonas placoidea,
Tomita, K., Hasegawa, M., Arii, S., Tsuji, K., Bober, B., Harada, K.  2016 Characteristic oxidation behavior of b-cyclocitral from the cyanobacterium MicrocystisEnviron. Sci. Pollut. Res., 23, 11998-12006. NIES-102 Microcystis aeruginosa
Tong, S., Hutchins, D. A., Fu, F., Gao, K. 2016 Effects of varying growth irradiance and nitrogen sources on calcification and physiological performance of the coccolithophoreGephyrocapsa oceanica grown under nitrogen limitation. Limnol. Oceanogr., 61, 2234–2242. NIES-1318 Gephyrocapsa oceanica
Tuji, A., Niiyama, Y. 2016 The identity and phylogeny of Pseudanabaena Strain, NIES-512, producing 2-methylisoborneol (2-MIB). Bull. Natl. Mus. Nat. Sci., Ser. B, 42, 83-89. NIES-512 Pseudanabaena galeatas
Wakisaka, Y., Suzuki, Y., Iwata, O., Nakashima, A., Ito, T., Hirose, M., Domon, R., Sugawara, M., Tsumura, N., Watarai, H., Shimobaba, T., Suzuki, K., Goda, K., Ozeki, Y. 2016 Probing the metabolic heterogeneity of live Euglena gracilis with stimulated Raman scattering microscopy. Nature Microbiology, 1, 16124 (article ID). NIES-48 Euglena gracilis
Wang, Y., Chiu, SY., Ho, SH., Liu, Z., Hasunuma, T., Chang, TT., Chang, KF., Chang, JS., Ren NQ., Kondo, A. 2016 Improving carbohydrate production of Chlorella sorokiniana NIES-2168 through semi-continuous process coupled with mixotrophic cultivation. Biotechnol. J, 11, 1072–1081. NIES-2168 Chlorella sorokinianas
Watanabe, H., Tamura, I., Abe, R. Takanobu, H., Nakamura, A., Suzuki, T., Hirose, A., Nishimura, T., Tatarazako, N.  2016 Chronic toxicity of an environmentally relevant mixture of pharmaceuticals to three aquatic organisms (alga, daphnid, and fish). Environ. Toxicol. Chem., 35, 996-1006. NIES-35 Pseudokirchneriella subcapitata
Watanabe, S., Nozaki, H., Nakada, T., Lewis, L. A.  2016 Comparative ultrastructural analysis of Chloromonas and Gloeomonas (Chlorophyceae): tracing the origin of Gloeomonas-specific basal apparatus traits.  Phycologia, 55, 585-601. NIES-447 Gloeomonas anomalipyrenoides,
NIES-464 Gloeomonas lateperforata
Watanabe, S., Fučíková, K., Lewis, L. A., Lewis P. O.  2016 Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhizaAm. J. Bot., 103, 865-875. NIES-3575 Koshicola spirodelophila
Yamagishi, T., Katsumata, M., Yamaguchi, H., Shimura, Y., Kawachi, M., Koshikawa, H., Horie, Y., Tatarazako, N.  2016 Rapid ecotoxicological bioassay using delayed fluorescence in the marine cyanobacterium Cyanobium sp. (NIES-981).  Ecotoxicology, 25, 1751-1758. NIES-981 Cyanobium sp.
Yamaguchi, H., Shimura, Y., Suzuki, S., Yamagishi, T., Tatarazako, N., Kawachi, M. 2016 Complete genome sequence of Cyanobium sp. NIES-981, a marine strain potentially useful for ecotoxicological bioassays. GenomeA, 4, e00736-16 (article ID). NIES-981 Cyanobium sp.
Yamamoto, M., Handa, S., Kawachi, M., Miyamura, S., Nagumo, T., Hirata, A., Kawano, S. 2016 Mother cell wall cleavage during filament formation in Stichococcus bacillaris (Trebouxiophyceae, Chlorophyta). Cytologia, 81, 85-39. NIES-3639 Stichococcus bacillaris
Yuasa, T., Horiguchi, T., Mayama, S., Takahashi, O.  2016 Gymnoxanthella radiolariae gen. et sp. nov. (Dinophyceae), a dinoflagellate symbiont from solitary polycystine radiolarians. J. Phycol., 52, 89-104. NIES-3649 Gymnoxanthella radiolariae
Zhang, Z., Wang, B., Hu, Q., Sommerfeld, M., Li, Y., Han, D. 2016 A new paradigm for producing astaxanthin from the unicellular green alga Haematococcus pluvialisBiotech. Bioeng., 113, 2088-2099. NIES-144 Haematococcus lacustris
Yagi, Satoshi, Kawakami, H., Fujiwara, T., Ishikawa, N., Ito, A., Sasamoto, M., Umita, T.  2016 Individual and combined toxicity of antibacterial substances to green alga Pseudokirchneriella subcapitata.  J. Jpn. Soc. Wat. Environ., 3, 63-70 (in Japanese with English summary). NIES-35 Pseudokirchneriella subcapitata
Yoshimura, T., Yanagawa, T., Fujiwara, A., Murai, K., Nogata, Y., Furuta, T., Kobayashi, T.  2016 Marine diatom Coscinodiscus wailesiii inhibits DPD measurement of residual chlorine in seawater samples.  Sessile Organisms, 33, 38-43 (in Japanese with English summary). NIES-1 Chattonella marina var. antiqua,
NIES-5 Heterosigma akashiwo,
NIES-237 Prorocentrum minimum,