1. Reference list published in 2018

Reference Strain (s)
Suzuki, S., Yamaguchi, H., Nakajima, N., Kawachi, M.  2018  Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales.  Sci Rep, 8, 8058 (article ID). NIES-35 
de Mendoza, A., Bonnet, A., Vargas-Landin, D.B., Ji, N., Li, H., Yang, F., Li, L., Hori, K., Pflueger, J., Buckberry, S., Ohta, H., Rosic, N., Lesage, P., Lin, S., Lister, R.  2018  Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.  Nat. Commun., 9, 1341 (article ID). NIES-2285 Klebsormidium nitens
Zhao, L., Song, Y., Li, L., Gan, N., Brand, JJ., Song, L.  2018  The highly heterogeneous methylated genomes and diverserestriction-modification systems of bloom-forming Microcystis.  Harmful Algae, 75, 87-93. NIES-843, NIES-2549 Microcystis aeruginosa
PLoS One  2018  Euglena gracilis growth and cell composition under different temperature, light and trophic conditions.  PLoS One, 13, e0195329 (article ID). NIES-48 Euglena gracilis
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A.  2018  Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae.  J. Appl. Phycol. NIES-16 Skeletonema costatum
Matsuzaki, R., Nozaki, H., Kawachi, M.  2018  Taxonomic revision of Chloromonas nivalis (Volvocales, Chlorophyceae) strains, with the new description of two snow-inhabiting Chloromonas species.  PLoS One, 13, e0193603 (article ID). NIES-464 Gloeomonas lateperforata,
NIES-2379 Chloromonas miwae,
NIES-2563 Chloromonas pseudoplatyrhyncha,
Hasegawa, H., Nozawa, A., Papry, R. I., Maki, T., Miki, O., Rahman, M. A.  2018  Effect of biodegradable chelating ligands on Fe uptake in and growth of marine microalgae.  J. Appl. Phycol. NIES-16 Skeletonema costatum
Watanabe, S., Nakada, T.  2018  Gymnomonas nepalensis gen. et sp. nov. for the naked flagellate strain ‘Nepal’, formerly identified as Dunaliella lateralis (Volvocales, Chlorophyceae).  Phycol. Res. NIES-3572, NIES-4107 Gymnomonas nepalensis
Mousavi, S., Najafpour, G.D., Mohammadi, M., Seifi, M.H.  2018  Cultivation of newly isolated microalgae Coelastrum sp. in wastewater.  Bioprocess. Biosyst. Eng., 41, 519-530. NIES-244 Coelastrum astroideum
Tuji, A., Nakagawa, M., Sato, M., Yamaguchi, H.  2018  A new planktonic diatom, Craticula pseudocitrus sp. nov., Naviculales, Bacillariophyceae found in Lake Kasumigaura, Japan.  Bull. Natl. Mus. Nat. Sci., Ser. B, 44, 15-22. NIES-4015 Craticula pseudocitrus
Yamaguchi, H., Suzuki, S., Osana, Y., Kawachi, M.  2018  Complete genome sequence of Microcystis aeruginosa NIES-2481 and common genomic features of group G M. aeruginosa.  J. Genomics, 6, 30-33. NIES-2481 Microcystis aeruginosa
Temraleeva, A. D.  2018  Cyanobacterial diversity in the soils of russian dry steppes and semideserts.  Microbiology, 87, 249-260. NIES-24 Nostoc commune
Lim, A. S., Jeong, H. J., Ok, J. H., Kim, S. J.  2018  Feeding by the harmful phototrophic dinoflagellate Takayama tasmanica (Family Kareniaceae).  Harmful Algae, 74, 19-29. NIES-2411 Karenia mikimotoi
Pollner, E., Farré, E. M., Bennlng, C.  2018  Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp.  Plant Cell Reports NIES-2145 Nannochloropsis oceanica,
NIES-2146 Nannochloropsis oculata
Peng, G., Martin, R.M., Dearth, S.P., Sun, X., Boyer, G.L., Campagna, S.R., Lin, S., Wilhelm, S.W.  2018  Seasonally relevant cool temperatures interact with N chemistry to increase microcystins produced in lab cultures of Microcystis aeruginosa NIES-843.  Environ. Sci. Technol., 4127-4136.52, NIES-843 Microcystis aeruginosa
Hamaji, T., Kawai-Toyooka, H., Uchimura, H., Suzuki, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Fujiyama, A., Miyagishima, S., Umen, J. G., Nozaki, H.  2018  Anisogamy evolved with a reduced sexdetermining region in volvocine green algae.  Communications Biology, 1, 17 (article ID). NIES-3982, NIES-3983 Yamagishiella unicocca,
NIES-3984, NIES-3985 Eudorina sp.,
Moten, D., Batsalova, T., Basheva, D., Mladenov, R., Dzhambazov, B., Teneva, I.  2018  Outer membrane efflux protein (OMEP) is a suitable molecular marker for resolving the phylogeny and taxonomic status of closely related cyanobacteria.  Phycol. Res., 66, 31-36. NIES-39 Arthrospira platensis,
NIES-843 Microcystis aeruginosa,
NIES-2104 Leptolyngbya sp.,
Yamasaki, Y., Fujita, M., Kawano, S., Baba, T.  2018  Effect of salinity on interspecific competition between the dinoflagellate Alexandrium catenella and the raphidophyte Heterosigma akashiwo.  Aquat. Microb. Ecol., 81, 73-82. NIES-10 Heterosigma akashiwo
Htet, AN., Noguchi, M., Ninomiya, K., Tsuge, Y., Kuroda, K., Kajita, S., Masai, E., Katayama, Y., Shikinaka, K., Otsuka, Y., Nakamura, M., Honda, R., Takahashi, K.  2018  Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid.  J. Biosci. Bioeng. NIES-2151 Graesiella emersonii
Shen, X-F., Hu, H., Ma, L-L., Lam, P. K. S., Yan, S-K., Zhou, S-B., Zeng, R. J.  2018  FAMEs production from Scenedesmus obliquus in autotrophic, heterotrophic and mixotrophic cultures under different nitrogen conditions.  Environ. Sci.-Wat. Res. Technol., 4, 461-468. NIES-2280 Tetradesmus obliquus
Sun, P., Cheng, K-W., He, Y., Liu, B., Mao, X., Chen, F.  2018  Screening and identification of inhibitors of advanced glycation endproduct formation from microalgal extracts.  Food Funct., 9, 1683-1691. NIES-144 Haematococcus lacustris
Lysgaard, M. L., Eckford-Soper, L., Daugbjerg, N.  2018  Growth rates of three geographically separated strains of the ichthyotoxic Prymnesium parvum (Prymnesiophyceae) in response to six different pH levels.  Estuar. Coast. Shelf Sci., 204, 98-102. NIES-1017 Prymnesium parvum
Toyoshima, M., Sato, N.  2018  Optimization of triacylglycerol and starch production in Chlamydomonas debaryana NIES-2212 with regard to light intensity and CO2 concentration.  Microbiology, 164, 359-368. NIES-2212 Chlamydomonas debaryana
Yamada, E., Ueda, T., Tanaka, T., Fujii, K., Mizuguchi, H., Fuse, Y.  2018  Effects of photoirradiation on the characteristics of dissolved organic matter in Lake Biwa and its surrounding rivers.  J. Environ. Safety. NIES-109 Microcystis aeruginosa,
NIES-275 Cryptomonas ovata,
NIES-665 Staurastrum dorsidentiferum
Schlüter, L., David, G. S., Jørgensen, N. O. G., Podduturi, R., Tucci, A., Dias, A. S., da Silva, R. J.  2018  Characterization of phytoplankton by pigment analysis and the detection of toxic cyanobacteria in reservoirs with aquaculture production.  Aquac. Environ. Interact., 10, 35-48. NIES-107 Microcystis aeruginosa
Zhu, J., Wakisaka, M.  2018  Growth promotion of Euglena gracilis by ferulic acid from rice bran.  AMB Express, 8 NIES-48 Euglena gracilis
Ranjan, P., Kateriya, S.  2018  Localization and dimer stability of a newly identifed microbial rhodopsin from apolar, non-motile green algae.  BMC Res. Notes NIES-2166 Coccomyxa subellipsoidea
Tong, S., Gao, K., Hutchins, D. A.  2018  Adaptive evolution in the coccolithophore Gephyrocapsa oceanica following 1,000 generations of selection under elevated CO2.  Glob. Change Biol. NIES-1318 Gephyrocapsa oceanica
Lee, C., Jeon, M. S., Vo, T-T., Park, C., Choi, J-S., Kwon, J., Roh, S. W., Choi, Y-E.  2018  Establishment of a new strategy against Microcystis bloom using newly isolated lytic and toxin-degrading bacteria.  J. Appl. Phycol. NIES-144 Haematococcus lacustris
Featherston, J., Arakaki, Y., Hanschen, ER., Ferris, PJ., Michod, RE., Olson, BJSC., Nozaki, H., Durand PM.  2018  The 4-celled Tetrabaena socialis nuclear genome reveals the essential components for genetic control of cell number at the origin of multicellularity in the volvocine lineage.  Mol. Biol. Evol., 35, 855-870. NIES-571 Tetrabaena socialis var. socialis
Hamada, M., Schröder, K., Bathia, J., Kürn, U., Fraune, S., Khalturina, M., Khalturin, K., Shinzato, C., Satoh, N., Bosch, T. C.G.  2018  Metabolic co-dependence drives the evolutionary ancient Hydra-Chlorella symbiosis.  bioRxχiv. NIES-2166 Coccomyxa subellipsoidea,
NIES-2235 Chlamydomonas reinhardtii,
NIES-2541 Chlorella variabilis
Zhang, C., Chen, G., Wang, Y., Guo, C., Zhou, J.  2018  Physiological and molecular responses of Prorocentrum donghaiense to dissolved inorganic phosphorus limitation.  Mar. Pollut. Bull., 129, 562-572. NIES-144 Haematococcus lacustris
Lin, W., Zhao, D., Luo, J.  2018  RDistribution of alkaline phosphatase genes in cyanobacteria and the role of alkaline phosphatase on the acquisition of phosphorus from dissolved organic phosphorus for cyanobacterial growth.  J. Appl. Phycol., 30, 839-850. NIES-30 Leptolyngbya sp.,
NIES-39 Arthrospira platensis,
NIES-81 Aphanizomenon flos-aquae f. gracile,
Hanschen, ER., Herron, MD., Wiens, JJ., Nozaki, H., Michod, RE.  2018  Repeated evolution and reversibilityof self-fertilization in the volvocinegreen algae.  Evolution, 72, 386-398. NIES-418 Astrephomene gubernaculifera,
NIES-456 Eudorina elegans,
NIES-460 Eudorina illinoisensis,
Song, H., Wang, Q., Liu, X., Hu, Y., Long, J., Liu, G., Hu, Z.  2018  Phylogenic diversity and taxonomic problems of the Dictyosphaerium morphotype within the Parachlorella clade (Chlorellaceae, Trebouxiophyceae).  J. Eucaryot. Microbiol., 65, 382-391. NIES-453 Dictyosphaerium pulchellum
Sausen, N., Malavasi, V., Melkonian, M.  2018  Molecular phylogeny, systematics and revision of the type species of Lobomonas, L. francei,(Volvocales, Chlorophyta) and closely related taxa.  J. Phycol. NIES-257 Hafniomonas laevis,
NIES-418 Astrephomene gubernaculifera,
NIES-456 Eudorina elegans,
Yoo, Y.D., Seong, K.A., Kima, H.S., Jeong, H.J., Yoon, E.Y., Park, J., Kim, J.I., Shin, W., Palenik, B.  2018  Feeding and grazing impact by the bloom-forming euglenophyte Eutreptiella eupharyngea on marine eubacteria and cyanobacteria.  Harmful Algae, 73, 98-109. NIES-381 Eutreptiella gymnastica
Aikawa, S., Inokuma, K., Wakai, S., Sasaki, K., Ogino, C., Chang, J-S., Hasunuma, T., Kondo, A.  2018  Direct and highly productive conversion of cyanobacteria Arthrospira platensis to ethanol with CaCl2 addition.  Biotechnol. Biofuels, 11 NIES-39 Arthrospira platensis
Gómez-Lojero, C., Leyva-Castillo, L. E., Herrera-Salgado, P., Barrera-Rojas, J., Ríos-Castro, E., Gutiérrez-Cirlos, E. B.  2018  Leptolyngbya CCM 4, a cyanobacterium with far-red photoacclimation from Cuatro Ciénegas Basin, México.  Photosynthetica NIES-30 Leptolyngbya sp.
Hirashima, T., Toyoshima, M., Moriyama, T., Sato, N.  2018  Evolution of the phosphatidylcholine biosynthesis pathways in green algae: Combinatorial diversity of methyltransferases.  J. Mol. Evol., 86, 68-76. NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Mao, F., He, Y., Gin, KY.  2018  Evaluating the joint toxicity of two benzophenone-type UV filters on the Ggreen alga Chlamydomonas reinhardtii with response surface methodology.  Toxics, 6, 8 (article ID). NIES-2463 Chlamydomonas reinhardtii
Piligaeva, A.V., Sorokinaab, K.N., Shashkovab, M.V., Parmon, V.N.  2018  Screening and comparative metabolic profiling of high lipid content microalgae strains for application in wastewater treatment.  Bioresour. Technol., 250, 538-547. NIES-2164 Auxenochlorella protothecoides,
NIES-2280 Tetradesmus obliquus
Hoshina, R., Kobayashi, M., Suzaki, T., Kusuoka, Y.  2018  Brandtia ciliaticola gen. et sp. nov. (Chlorellaceae, Trebouxiophyceae) a common symbiotic green coccoid of various ciliate species.  Phycol. Res., 66, 76-81. NIES-4032, NIES-4033, NIES-4034 Carolibrandtia ciliaticola
Choi, YY., Hong, ME., Jin, ES., Woo, HM., Sim, SJ  2018  Improvement in modular scalability of polymeric thin-film photobioreactor for autotrophic culturing of Haematococcus pluvialis using industrial flue gas.  Biores. Technol., 249, 519-526. NIES-144 Haematococcus lacustris
Ishinishi, R., Matsuura, H., Tanaka, S., Nozawa, S., Tanada, K., Kawashita, N., Fujiyama, K., Miyasaka, H., Hirata, K.  2018  Isolation and characterization of a stress-responsive gene encoding a CHRD domain-containing protein from a halotolerant green alga.  Gene, 640, 14-20. NIES-2235 Chlamydomonas reinhardtii
Ueki, N., Wakabayashi, K.  2018  Detergent-extracted Volvox model exhibits an anterior–posterior gradient in flagellar Ca2+ sensitivity.  Proc. Natl. Acad. Sci. U. S. A., NIES-4029 Volvox rousseletii

2. Reference list published in 2017

Reference Strain (s)
Hayashia, T., Otakia, R., Hiraia, K., Tsuzukia, M., Sato, N.  2017  Optimization of seawater-based triacylglycerol accumulation in a freshwater green alga, Chlorella kessleri, through simultaneous imposition of loweredtemperature and enhanced-light intensity.  Sci. Rep., 28, 46100 (article ID). NIES-2152 Parachlorella kessleri
Sugiyama, K., Ebisawa, M., Yamada, M., Nagashima, Y., Suzuki, H., Maoka, T., Takaichi, S.  2017  Functional lycopene cyclase (CruA) in cyanobacterium, Arthrospira platensis NIES-39, and its role in carotenoid synthesis.  Plant Cell Physiol., 58, 831-838. NIES-39 Arthrospira platensis
Yiu, S. K. F., Zhang, F. F., Au, D. W. T., Ho, K. C., Xu, S. J.  2017  The tolerance of rabbitfish siganus oramin to the ichthyotoxic alga Chattonella marina.  J. Marine Biol. Aquacult., 3, 1-4. NIES-3 Chattonella marina var. marina
Kanda, N., Ichikawa, M., Ono, A., Toyoda, A., Fujiyama, A., Abe, J., Tsuchikane, Y., Nishiyama, T., Sekimoto, H.  2017  CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex.  Sci Rep, 7, 17873 (article ID). NIES-67, NIES-68  Closterium peracerosum-strigosum-littoralecomplex
Rekully, CM., Faulkner, ST., Lachenmyer, EM., Cunningham, BR., Shaw, TJ., Richardson, TL., Myrick, ML.  2017  Fluorescence excitation spectroscopy for phytoplankton species classification using an all-pairs method: Characterization of a system with unexpectedly low rank.  Appl. Spectrosc. NIES-704 Chroomonas dispersa
Kusui, T., Itatsu, Y., Jin, J.  2017  Whole effluent toxicity assessment of industrial effluents.  In Toxicity and biodegradation testing, Eds. by Bidoia, E. D. & Montagnolli, R. N., Humana Press, New York, NY, 331-347. NIES-35 Pseudokirchneriella subcapitata
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E.  2017  Deletion of psbQ’ gene in Cyanidioschyzon merolae reveals the function of extrinsic PsbQ’ in PSII.  Plant Mol. Biol. NIES-3377 Cyanidioschyzon merolae
Johansen, JR., Mareš, J., Pietrasiak, N., Bohunická, M., Zima, J Jr., Štenclová, L., Hauer, T.  2017  Highly divergent 16S rRNA sequences in ribosomal operons of Scytonema hyalinum (Cyanobacteria).  PLoS One, 12, e0186393 (article ID). NIES-2130 Scytonema sp.
Ando, D., Fujisawa, T., Katagi, T.  2017  Fate of flumioxazin in aquatic plants: Two algae (Pseudokirchneriella subcapitata, Synechococcus sp.), duckweed (Lemna sp.), and water milfoil (Myriophyllum elatinoides).  J. Agric. Food Chem., 65, 8813-8822. NIES-35 Pseudokirchneriella subcapitata,
NIES-937 Synechococcus sp.
Kawai, S., Araki, S., Kodama, Y.  2017  No mutual symbiosis following infection of algae-free Paramecium bursaria with symbiotic algae from Mayorella viridis.  Symbiosis NIES-692 Chlorogonium capillatum
Mao, F., He, Y., Kushmaro, A., Gin, KY.  2017  Effects of benzophenone-3 on the green alga Chlamydomonas reinhardtii and the cyanobacterium Microcystis aeruginosa.  Aquat. Toxicol., 193, 1-8. NIES-843 Microcystis aeruginosa,
NIES-2463 Chlamydomonas reinhardtii
Nogami, R., Nishida, H., Hong, D. D., Wakisaka, M.  2017  Growth promotion effect of alginate oligosaccharides on Spirulina analyzed by repeated batch culture.  J. Jpn. Inst. Energy, 96, 352-356. NIES-39 Arthrospira platensis
Lopes dos Santos, A., Pollina, T., Gourvil, P., Corre, E., Marie, D., Garrido, J. L., Rodríguez, F., Noël, M.-H., Vaulot, D., Eikrem, W.  2017  Chloropicophyceae, a new class of picophytoplanktonic prasinophytes.  Sci Rep, 7, 14019 (article ID). NIES-2755 Chloropicon sieburthii,
NIES-2756 Chloroparvula pacifica,
NIES-2758 Chloroparvula japonica
Hirooka, S., Hirose, Y., Kanesaki, Y., Higuchi, S., Fujiwara, T., Onuma, R., Era, A., Ohbayashi, R., Uzuka, A., Nozaki, H., Yoshikawa, H., Miyagishima, SY.  2017  Acidophilic green algal genome provides insights into adaptation to an acidic environment.  Proc. Natl. Acad. Sci. U. S. A., 114, E8304–E8313. NIES-2499 Chlamydomonas eustigma
Kondo, R., Okamura, T.  2017  Growth and grazing kinetics of the facultative anaerobic nanoflagellate, Suigetsumonas clinomigrationis.  Microbes Environ., 32, 80-83. NIES-3647 Suigetsumonas clinomigrationis
Huang, Y-T., Lai, C-W., Wu, B-W., Lin, K-S., Wu, J.C.S., Md Shahriar A Hossain, Yamauchi, Y., Wu, C.-W.  2017  Advances in bioconversion of microalgae with high biomass and lipid productivity.  J. Taiwan Inst. Chem. Eng., 79, 37-42. NIES-2199 Botryococcus braunii
Pengfei, J., Wang, H., Huang, W., Liu, W., Fan, Y., Miao, W.  2017  The allelopathic effect and safety evaluation of 3,4-Dihydroxybenzalacetone on Microcystis aeruginosa.  Pest. Biochem. Physiol. NIES-843 Microcystis aeruginosa
Wang, C., Wang, Z., Luo, F., Li, Y.  2017  The augmented lipid productivity in an emerging oleaginous model alga Coccomyxa subellipsoidea by nitrogen manipulation strategy.  World J. Microbiol. Biotechnol., 33, 160 (article ID). NIES-2166 Coccomyxa subellipsoidea
Yonamine, Y., Suzuki, Y., Ito, T., Miura, Y., Goda, K., Ozeki, Y., Hoshino, Y.  2017  Monitoring photosynthetic activity in microalgal cells by Raman spectroscopy with deuterium oxide as a tracking probe.  ChemBioChem, 18, 2063–2068. NIES-48 Euglena gracilis
Mano, H., Takeda, F., Kitamura, T., Okamoto, S., Suzuki, Y., Park, CB., Yasui, N., Kobayashi, K., Tanaka, Y., Yamashita, N., Minamiyama, M.  2017  Water quality comparison of secondary effluent and reclaimed water to ambient river water of southern Okinawa Island via biological evaluation.  Environ. Monit. Assess., 189, 442 (article ID). NIES-35 Pseudokirchneriella subcapitata
Klemenčič, M., Funk, C.  2017  Structural and functional diversity of caspase homologues in non-metazoan organisms.  Protoplasma NIES-44 Microcystis aeruginosa,
NIES-843 Microcystis aeruginosa,
NIES-2549 Microcystis aeruginosa
Silas, S., Makarova, KS., Shmakov, S., Páez-Espino, D., Mohr, G., Liu, Y., Davison, M., Roux, S.9, Krishnamurthy, SR., Fu, BXH., Hansen, LL., Wang, D., Sullivan, MB., Millard, A., Clokie, MR., Bhaya, D., Lambowitz, AM., Kyrpides, NC., Koonin, EV., Fire, AZ.  2017  On the origin of reverse transcriptaseUsing CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires.  mBio, 8, e00897-17 (article ID). NIES-39 Arthrospira platensis
Ohkubo, N., Tomaru, Y., Yamaguchi, H., Kitatsuji, S., Mochida, K.  2017  Development of a method to assess the ichthyotoxicity of the harmful marine microalgae Karenia spp. using gill cell cultures from red sea bream (Pagrus major).  Fish Physiol. Biochem., 43, 1603–1612. NIES-6 Heterosigma akashiwo
Fuchida, S.,Yokoyama, A., Fukuchi, R., Ishibashi, J., Kawagucci, S., Kawachi, M., Koshikawa, H.  2017  Leaching of metals and metalloids from hydrothermal ore particulates and their effects on marine phytoplankton.  ACS Omega, 2, 3175–3182. NIES-324 Skeletonema marinoi-dohrnii complex
Kerfeld, CA., Melnicki, MR., Sutter M., Dominguez-Martin, MA.  2017  Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs.  New Phytol., 215, 937-951. NIES-39 Arthrospira platensis,
NIES-81 Aphanizomenon flos-aquae,
NIES-843 Microcystis aeruginosa
Katsumata, M., Ikushima, Y., Bennett, K., Sato, Y., Takeuchi, A., Tatarazako, N., Hakamata, T.  2017  Validation of rapid algal bioassay using delayed fluorescence in an interlaboratory ring study.  Sci. Total Environ., 605-606, 842-851. NIES-35 Pseudokirchneriella subcapitata
Takenaka, S., Yoshikawa, T., Kadowaki, S., Okunishi, S., Maeda, H.  2017  Microflora in the soft Ttissue of the pacific oyster Crassostrea gigas exposed to the harmful microalga Heterosigma akashiwo.  Biocontrol Science, 22, 79-87. NIES-5 Heterosigma akashiwo
Tamura, I., Yasuda, Y., Kagota, K., Yoneda, S., Nakada, N., Vimal Kumar, V., Yutaka Kameda, Y., Kumiko Kimura, K., Norihisa Tatarazako, N., Hiroshi Yamamoto, H.  2017  Contribution of pharmaceuticals and personal care products (PPCPs) to whole toxicity of water samples collected in effluent-dominated urban streams.  Ecotox. Environ. Safe., 144, 338-350. NIES-35 Pseudokirchneriella subcapitata
Ngoc, N.M., Yokota, K., James, M., Inoue, Y.  2017  The estimation of bioavailable phosphorus in particulate forms by ultrasonic treatment.  J. Environ. Chem. Eng. NIES-44 Microcystis aeruginosa
Mitani, E., Nakayama, F., Matsuwaki, I., Ichi, I., Kawabata, A., Kawachi, M., Kato, M.  2017  Fatty acid composition profiles of 235 strains of three microalgal divisions within the NIES Microbial Culture Collection.  Microb. Resour. Syst., 33, 19-29. NIES-1 Chattonella marina var. antiqua,
NIES-8 Pleurochrysis roscoffensis,
NIES-9 Heterosigma akashiwo,
Yamamoto, K., Kawai-Toyooka, H., Hamaji, T., Tsuchikane, Y., Mori, T., Takahashi, F., Sekimoto, H., Ferris, P. J., Nozaki, H.  2017  Molecular evolutionary analysis of a gender-limited MID ortholog from the homothallic species Volvox africanus with male and monoecious spheroids.  PLoS One, 12, e0180313 (article ID). NIES-3780 Volvox africanus,
NIES-3782 Volvox reticuliferus,
NIES-3783 Volvox reticuliferus,
Nozue, S., Katayama, M., Terazima, M., Kumazaki, S.  2017  Comparative study of thylakoid membranes in terminal heterocysts and vegetative cells from two cyanobacteria, Rivularia M-261 and Anabaena variabilis, by fluorescence and absorption spectral microscopy.  Biochim. Biophys. Acta-Bioenerg., 1858, 742-749. NIES-2095 Anabaena variabilis
Tomaru, Y., Toyoda, K., Kimura, K.  2017  Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan.  Hydrobiologia NIES-3714 Chaetoceros tenuissimus,
NIES-3716 Chaetoceros sp.
Kishi, M., Toda, T.  2017  Carbon fixation properties of three alkalihalophilic microalgal strains under high alkalinity.  J. Appl. Phycol. NIES-39 Arthrospira platensis,
NIES-2257 Dunaliella salina
Takeda, F., Minamiyama, M., Okamoto, S.  2017  Seasonal variation in ability of wastewater treatment for reduction in biological effects evaluated based on algal growth.  J. Water Environ. Technol., 15, 96-105. NIES-35 Pseudokirchneriella subcapitata
Hong, M., Choi, S. P., Park, Y., Kim, Y., Chang, W. S., Kim, B. W., Sim, S. J.  2017    , , . NIES-94 Scenedesmus acutus
Choi, Y. Y., Joun, J. M., Lee, J., Hong, M. E., Pham, H., Chang, W. S., Sim, S. J.  2017  Development of large-scale and economic pH control system for outdoor cultivation of microalgae Haematococcus pluvialis using industrial flue.  Biores. Technol., 244, 1235-1244. NIES-144 Haematococcus lacustris
Lapsongpon, T., Leungprasert, S., Yoshimura, C.  2017  Pre-chlorination contact time and the removal and control of Microcystis aeroginosa in coagulation.  7th International Conference on Environment and Industrial Innovation, 012011 (article ID). NIES-843 Microcystis aeruginosa
Baresova, M., Pivokonsky, M., Novotna, K., Naceradska, J., Branyik, T.  2017  An application of cellular organic matter to coagulation of cyanobacterial cells (Merismopedia tenuissima).  Wat. Res., 122, 70-77. NIES-230 Merismopedia tenuissima
Bertuzz, S., Gustavs, L., Pandolfini, G., Tretiac, M.  2017  Heat shock treatments for the control of lithobionts: A case study with epilithic green microalgae.  Int. Biodeterior. Biodegrad., 123, 236-243. NIES-2166 
Ohtaka,K., Hori, K., Kanno, Y., Seo, M., Ohta, H.  2017  Primitive Auxin Response without TIR1 and Aux/IAA in the Charophyte Alga Klebsormidium nitens.  Plant Physiol., 174, 1621-1632. NIES-2285 Klebsormidium nitens
Grochau-Wright, Z. I., Hanschen, E. R., Ferris, P. J., Hamaji, T., Nozaki, H., Olson, B. J. S. C., Michod, R. E.  2017  Genetic basis for soma is present in undifferentiated volvocine green algae.  J. Evol. Biol., 30, 1205–1218. NIES-1861 Yamagishiella unicocca
Muñoz-Gómez, S. A., Mejía-Franco, F. G., Durnin, K., Colp, M., Grisdale, D. J., Archibald, J. M., Slamovits, C. H., 2017  The new red algal subphylum proteorhodophytina comprises the largest and most divergent plastid genomes known.  Curr. Biol., 27, 1-8. NIES-2662 Corynoplastis japonica,
NIES-2742 Bulboplastis apyrenoidosa
Guionet, A., Hosseini, B., Teissié, J., Akiyama, H., Hosseini, H.  2017  A new mechanism for efficient hydrocarbon electro-extraction from Botryococcus braunii.  Biotechnol. Biofuels, 10, . NIES-836 Botryococcus braunii
Cheng, T., Zhang, W., Xhang, W., Yuan, G., Wang, H., Liu, T.  2017  An oleaginous filamentous microalgae Tribonema minus exhibits high removing potential of industrial phenol contaminants.  Biores. Technol., 238, 749-754. NIES-2175 Muriella zofingiensis
Hirato, Y., Tokuhisa, M., Tanigawa, M., Ashida, H., Tanaka, H., Nishimura, K.  2017  Cloning and characterization of d-threonine aldolase from the green alga Chlamydomonas reinhardtii.  Phytochemistry, 135, 18-23. NIES-2237 Chlamydomonas reinhardtii
Fujiwara, T., Ohnuma, M., Kuroiwa, T., Ohbayashi, R., Hirooka, S., Miyagishima, S-Y.  2017  Development of a double nuclear gene-targeting method by two-step transformation based on a newly established chloramphenicol-selection system in the red alga Cyanidioschyzon merolae.  Front. Plant Sci., 8, e343 (article ID). NIES-3377 Cyanidioschyzon merolae
Shiba, K., Inaba, K.  2017  Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae.  J. Plant Res., 130, 465-473. NIES-626 Pterosperma cristatum
Hamaji, T., Kawai-Toyooka, H., Toyoda, A., Minakuchi, Y., Suzuki, M., Fujiyama, A., Nozaki, H., Smith, D. R.  2017  Multiple independent changes in mitochondrial genome conformation in chlamydomonadalean algae.  Genome Biol. Evol., 9, 993-999. NIES-3982 Yamagishiella unicocca,
NIES-3984 Eudorina sp.
Ngoc, N.M., Inoue, Y., Yokota, K.  2017  Ultrasonic extraction method for quantifying bioavailable phosphorus in particulate form.  J. Environ. Chem. Eng., 5, 2498-2507. NIES-44 Microcystis aeruginosa
Reichert,M., Bergmann,S. M., Hwang, J., Buchholz, R., Lindenberger, C.  2017  Antiviral activity of exopolysaccharides from Arthrospira platensis against koi herpesvirus.  J. Fish Dis., 40, 1441–1450. NIES-39 Arthrospira platensis
Yamada, M., Otsubo, M., Tsutsumi, Y., Mizota, C., Nakamura, Y., Takahashi, K., Iwataki M.  2017  Utility of mitochondrial-encoded cytochrome c oxidase I gene for phylogenetic analysis and species identification of the planktonic diatom genus Skeletonema.  Phycol. Res., 65, 217-225. NIES-16 Skeletonema marinoi-dohrnii complex,
NIES-223 Skeletonema marinoi-dohrnii complex,
NIES-2837 Skeletonema ardens,
Kohira, M., Matsumoto, T., Yamada, Y., Nanba, N., Kado, R.  2017  Effects of hydrogen peroxide on phytoplanktons, seaweed gametophytes, marine harpacticoid copepod and striped barnacle larvae.  Sessile Organisms, 34, 1-12 (in Japanese with English summary). NIES-235 Heterocapsa triquetra,
NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-586 Chaetoceros didymus,
Sekimoto, H.  2017  Sexual reproduction and sex determination in green algae.  J. Plant Res., 130, 423-431. NIES-235 Heterocapsa triquetra,
NIES-324 Skeletonema marinoi-dohrnii complex,
NIES-586 Chaetoceros didymus,
Honda, R., Teraokab, Y., Noguchia, M., Yang, S.  2017  Optimization of hydraulic retention time and biomass concentration in microalgae biomass production from treated sewage with a membrane photobioreactor.  J. Water Environ. Technol., 15, 1-11. NIES-2170 Chlorella vulgaris
Khanam, MR., Shimasaki, Y., Hosain, MZ., Mukai, K., Tsuyama, M., Qiu, X., Tasmin, R., Goto, H., Oshima, Y.  2017  Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex.  Chemosphere, 175, 200-209. NIES-324 Skeletonema marinoi-dohrnii complex
Yamagishi, T., Horie, Y., Tatarazako, N. 2017  Synergism between macrolide antibiotics and the azole fungicide ketoconazole in growth inhibition testing of the green alga Pseudokirchneriella subcapitata.  Chemosphere, 174, 1-7. NIES-35 Pseudokirchneriella subcapitata
Xuan, H., Dai, X., Li, J., Zhang, X., Yang, C., Luo, F.  2017  A Bacillus sp. strain with antagonistic activity against Fusarium graminearum kills Microcystis aeruginosa selectively.  Sci. Total Environ., 583, 214-221. NIES-44 Microcystis aeruginosa,
NIES-90 Microcystis aeruginosa,
NIES-843 Microcystis aeruginosa
Yamagishi, T., Yamaguchi, H., Suzuki, S., Horie, Y., Tatarazako, N. 2017  Cell reproductive patterns in the green alga Pseudokirchneriella subcapitata (=Selenastrum capricornutum) and their variations under exposure to the typical toxicants potassium dichromate and 3,5-DCP.  PLoS One, 12, e0171259 (article ID). NIES-35 Pseudokirchneriella subcapitata
Kimura, K., Tomaru, Y. 2017  Effects of temperature and salinity on diatom cell lysis by DNA and RNA viruses.  Aquat. Microb. Ecol., 79, 79-83. NIES-3714 Chaetoceros tenuissimus,
NIES-3716 Chaetoceros sp.
Kimura, Y., Tomita-Yokotani, K., Katho, H., Sato, S., Ohmori, M. 2017  Complete life cycle and heat tolerance of dry colonies of a terrestrial cyanobacterium, Nostoc sp. HK-01.  Biological Sciences in Space, 31, 1-8. NIES-2109 Nostoc sp.
Nagai, T.  2017  Predicting herbicide mixture effects on multiple algal species using mixture toxicity models.  Environ. Toxicol. Chem. NIES-71 Achnanthidium minutissimum,
NIES-487 Nitzschia palea,
NIES-512 Pseudanabaena foetida var. intermedia,
NIES-797 Desmodesmus subspicatus
Hirashima, T., Toyoshima, M., Moriyama, T., Nakamura, Y., Sato, N.  2017  Characterization of phosphoethanolamine-N-methyltransferases in green algae.  Biochem. Biophys. Res. Commun., 488, 141-146. NIES-2202 Chlamydomonas applanata,
NIES-2207 Chlamydomonas asymmetrica,
NIES-2212 Chlamydomonas debaryana,
Nakada, T., Tomita, M.  2017  Morphology and phylogeny of a new wall‐less freshwater volvocalean flagellate, Hapalochloris nozakii gen. et sp. nov. (Volvocales, Chlorophyceae).  J. Phycol., 53, 108-117. NIES-2254 Dunaliella parva,
NIES-2320 Rhysamphichloris similis,
NIES-3705 Rhysamphichloris curta,
Hirato, Y., Goto, M., Tokuhisa, M., Tanigawa, M., Nishimura, K.  2017  Crystallization and X-ray analysis of D-threonine aldolase from Chlamydomonas reinhardtii.  Acta Crystallogr. F-Struct. Biol., F73, 86-89. NIES-2237 Chlamydomonas reinhardtii
Imanishi, S. Y., Nakayama, T., Asukabe, H., Harada, K. 2017  Application of MALDI Biotyper to cyanobacterial profiling.  Rapid Commun. Mass Spectrom., 31, 325-332. NIES-73 Sphaerospermopsis kisseleviana,
NIES-89 Microcystis aeruginosa,
NIES-102 Microcystis aeruginosa,
Guo, B., Lei, C., Ito, T., Yaxiaer, Y., Kobayashi, H., Jiang, Y., Tanaka, Y., Ozeki, Y., Goda, K. 2017  High-throughput label-free screening of Euglena gracilis with optofluidic time-stretch quantitative phase microscopy.  Proc. of SPIE, 10076 NIES-48 Euglena gracilis
Nobusawa, T., Hori, K., Mori, H., Kurokawa, K., Ohta, H. 2017  Differently localized lysophosphatidic acid acyltransferasescrucial for triacylglycerol biosynthesis in the oleaginous alga Nannochloropsis.  Plant J., 90, 547–559. NIES-2145 Nannochloropsis oceanica
Hamasaki, A.  2017  Study of the optimal cultivation for micro-algae.  The 12th Conference on Biomass Science, 27-28 (in Japanese with English summary). NIES-226 Graesiella emersonii
Kobayashi, N., Yukumoto, M.  2017  Improvement of micro algae yield by culture condition optimization.  The 12th Conference on Biomass Science, 145-146 (in Japanese with English summary). NIES-96 Desmodesmus sp.
Shimakawa, G., Matsuda, Y., Nakajima, K., Tamoi, M., Shigeoka, S., Miyake, C. 2017  Diverse strategies of O2 usage for preventing photo-oxidative damage under CO2 limitation during algal photosynthesis.  Sci Rep., 7, 41022 (article ID). NIES-48 Euglena gracilis
Takeya, M., Hirai, M. Y., Osanai, T. 2017  Allosteric inhibition of phosphoenolpyruvate carboxylases is determined by a single amino acid eesidue in cyanobacteria.  Sci Rep., 7, 41080 (article ID). NIES-3756 Nostoc sp.
Misumi, M., Sonoike, K. 2017  Characterization of the influence of chlororespiration on the regulation of photosynthesis in the glaucophyte Cyanophora paradoxa.  Sci Rep., 7, 46100 (article ID). NIES-547 Cyanophora paradoxa
Shimura, Y., Hirose, Y., Misawa, N., Wakazuki, S., Fujisawa, T., Nakamura, Y., Kanesaki, Y., Yamaguchi, H., Kawachi, M. 2017  Complete genome sequence of coastal cyanobacterium Synechococcus sp. strain NIES-970.  GenomeA, 5, e00139-17 (article ID). NIES-970 Synechococcus sp.
Livingston, G., Fukumori, K., Provete, D. B., Kawachi, M., Takamura, N., Leibold, M. A. 2017  Predators regulate prey species sorting and spatialdistribution in microbial landscapes.  J. Anim. Ecol. NIES-2239 Chlamydomonas reinhardtii
Satjarak, A., Graham, L. E. 2017  Comparative DNA sequence analyses of Pyramimonas parkeae (Prasinophyceae) chloroplast genomes.  J. Phycol., 53, 415-424. NIES-254 Pyramimonas parkeae
Inamura, E., Katayama, T., Taguchi, S. 2017  Absorption of low-dose ultraviolet radiation by mycosporine-like amino acids induced by the dinoflagellate Prorocentrum micans.  Plankton Benthos Res., 12, 15-24. NIES-218 Prorocentrum micans
Watanabe, S., Lewis, L. A. 2017  Phylogenetic interpretation of light and electron microscopic features of selected members of the phylogroup Moewusinia (Chlorophyceae), with new generic taxonomy.  Phycologia, 56, 329-353. NIES-155 Chlorococcum chlorococcoides
Tadama, S., Shiraishi, H. 2017  Growth of the edible microalga Arthrospira platensis in relation to boron supply.  International Journal of GEOMATE, 12, 90-95. NIES-39 Arthrospira platensis
Zhu, T., Hou, S., Lu, X., Hess, W. R. 2017  Draft genome sequences of nine cyanobacterial strains from diverse habitats.  GenomeA, 5, e01676-16 (article ID). NIES-30 Leptolyngbya sp.,
NIES-208 Oscillatoria rosea,
NIES-592 Fischerella majo,
Suzuki, N., Sanada, T., Terashima, C., Suzuki, T., Arai, T., Saitou, S., Kawashima, T., Mizutani, A., Saitou, T., Nakata, K., Katsumata, K., Kondo, T., Yuasa, M., Fujishima, A. 2017  Systematic studies of TiO2-based photocatalysts anti-algal effects on Chlorella vulgaris.  J. Appl. Electrochem., 47, 197-203. NIES-227 Chlorella vulgaris var. vulgaris
Shibakami, M., Sohma, M. 2017  Synthesis and thermal properties of paramylon mixed esters and optical, mechanical, and crystal properties of their hot-pressed films.  Carbohydr. Polym., 155, 416-424. NIES-48 Euglena gracilis
Motwalli, O., Essack, M., Jankovic, BR., Ji, B., Liu, X., Ansari, HR., Hoehndorf, R., Gao, X., Arold, ST., Mineta, K., Archer, JA., Gojobori, T., Mijakovic, I., Bajic, VB.  2017 In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria.  BMC Genomics, 18, 213-222. NIES-39 Arthrospira platensis
Kiperstok, A. C., Sebestyén, P., Podola, B., Melkonian, M. 2017  Biofilm cultivation of Haematococcus pluvialis enables a highly productive one-phase process for astaxanthin production using high light intensities.  Algal Research, 21, 213-222. NIES-144 Haematococcus lacustris
Sakami, T., Sakamoto, S., Takagi, S., Inaba, N., Imai, I. 2017  Distribution of three algicidal Alteromonas sp. strains in seagrass beds and surrounding areas in the Seto Inland Sea, Japan.  Fish. Sci., 83, 113-121. NIES-1 Chattonella marinavar. antiqua
Liu, X., Syuhei, B.  2017 Effects of acclimatization on metabolic plasticity of Eodiaptomus japonicus (Copepoda: Calanoida) determined using an optical oxygen meter.  J. Plankton Res., 39, 111-121. NIES-282 Cryptomonas tetrapyrenoidosa,
NIES-2235 Chlamydomonas reinhardtii
Allewaert, C. C., Vanormelingen, P., Daveloose, I., Vyverman, T. 2017  Intraspecific trait variation affecting astaxanthin productivity in two Haematococcus (Chlorophyceae) species.  Algal Research, 21, 191-202. NIES-144 Haematococcus lacustris
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Chloramphenicol acetyltransferase—a new selectable marker in stable nuclear transformation of the red alga Cyanidioschyzon merolae.  Protoplasma, 254, 587-596. NIES-3377 Cyanidioschyzon merolae
Zienkiewicz, M., Krupnik, T., Drożak, A., Golke, A., Romanowska, E. 2017  Transformation of the Cyanidioschyzon merolae chloroplast genome: prospects for understanding chloroplast function in extreme environments.  Plant Mol. Biol., 93, 171-183. NIES-1332 Cyanidioschyzon merolae
Iwai, S., Hurukawa, T., Yamane, K., Kawasaki, K., Osakada, K.  2017  Micro-algae cultivation and algae-oil fuel production by enrich CO2 introduction from diesel co-generation system.  Transactions of the JSME, 83, 16-00389 (article ID) (in Japanese with English summary). NIES-119 Tetradesmus dimorphus